FN Thomson Reuters Web of Science™
VR 1.0
PT J
AU Kolora, LD
Powell, CM
Hunter, W
Bextine, B
Lauzon, CR
AF Kolora, Lakshmi D.
Powell, Christopher M.
Hunter, W.
Bextine, B.
Lauzon, C. R.
TI Internal Extracellular Bacteria of Diaphorina citri Kuwayama (Hemiptera:
Psyllidae), the Asian Citrus Psyllid
SO CURRENT MICROBIOLOGY
LA English
DT Article
ID CANDIDATUS LIBERIBACTER ASIATICUS; AMPLICON PYROSEQUENCING BTEFAP;
VECTOR; MICROBIOTA; DIVERSITY; DISEASE; TEPHRITIDAE; TRIOZIDAE;
SYMBIONT; DIPTERA
AB The Asian Citrus Psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae), is an invasive insect pest that transmits Candidatus Liberibacter spp. This insect/pathogen system was first identified in North America in the early 2000's and has become the top threat to the citrus industry. Limited options for management of this problem exist; therefore, innovative pest management strategies are being developed. In this study, we describe the first step toward a paratransgenic approach (also referred to symbiotic control) for control of the insect vector or the pathogen. Culturable bacteria from the gut of Asian Citrus Psyllids were identified using standard culture techniques followed by sequencing of the cultured microorganisms. Further, 454 pyrosequencing of the gut was performed to audit bacterial presence in order to begin to identify any relationship between psyllid symbionts and C. Liberibacter spp.
C1 [Kolora, Lakshmi D.; Lauzon, C. R.] Calif State Univ Hayward, Dept Biol Sci, Hayward, CA 94543 USA.
[Powell, Christopher M.; Bextine, B.] Univ Texas Tyler, Dept Biol, Tyler, TX 75799 USA.
[Hunter, W.] ARS, USDA, US Hort Lab, Ft Pierce, FL 34945 USA.
RP Lauzon, CR (reprint author), Calif State Univ Hayward, Dept Biol Sci, 25800 Carlos Bee Blvd, Hayward, CA 94543 USA.
EM carol.lauzon@csueastbay.edu
OI Powell, Christopher/0000-0003-0716-6129
FU California State University Center for Research Student Award
FX This work was supported in part by a California State University Center
for Research Student Award. This manuscript does not contain clinical
studies or patient data.
NR 39
TC 1
Z9 1
U1 4
U2 34
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0343-8651
EI 1432-0991
J9 CURR MICROBIOL
JI Curr. Microbiol.
PD MAY
PY 2015
VL 70
IS 5
BP 710
EP 715
DI 10.1007/s00284-015-0774-1
PG 6
WC Microbiology
SC Microbiology
GA CE8HH
UT WOS:000352082000013
PM 25645736
ER
PT J
AU Guo, WC
Shang, L
Zhu, XH
Nelson, SO
AF Guo, Wenchuan
Shang, Liang
Zhu, Xinhua
Nelson, Stuart O.
TI Nondestructive Detection of Soluble Solids Content of Apples from
Dielectric Spectra with ANN and Chemometric Methods
SO FOOD AND BIOPROCESS TECHNOLOGY
LA English
DT Article
DE Apple; Dielectric properties; Soluble solids content; Generalized
regression neural network; Support vector machine; Extreme learning
machine
ID NEAR-INFRARED SPECTROSCOPY; SUPPORT VECTOR MACHINE; EXTREME
LEARNING-MACHINE; SUCCESSIVE PROJECTIONS ALGORITHM; VARIABLE SELECTION;
NIR SPECTROSCOPY; MULTIVARIATE-ANALYSIS; PATTERN-RECOGNITION; FRUIT
FIRMNESS; NEURAL-NETWORK
AB To investigate the feasibility of using dielectric spectra in nondestructively determining the soluble solids content (SSC) of fruits, the dielectric constants and loss factors of 160 apples of three varieties (Fuji, Red Rome, and Pink Lady) were obtained at 51 discrete frequencies from 10 to 1800 MHz with an open-ended coaxial-line probe and an impedance/material analyzer. Based on the joint x-y distances sample set partitioning (SPXY) method, 106 apples were selected for the calibration set and the other 54 samples were used for the prediction set. The principal component analysis (PCA), uninformative variables elimination method (UVE-PLS), based on partial least squares, and successive projection algorithm (SPA) were applied to extract characteristic variables from original full dielectric spectra. The generalized regression neural network (GRNN), support vector machine (SVM) and extreme learning machine (ELM) modeling methods were used to establish models to predict SSC of apples, based on the original full dielectric spectra and characteristic variables, respectively. Results showed that four principal components were selected as characteristic variables by PCA, 15 dielectric constants and 14 loss factors at different frequencies were selected as characteristic variables by UVE-PLS, and one dielectric constant and ten loss factors were chosen as feature variables by SPA. ELM combined with SPA had the best SSC prediction performance, with calibrated correlation coefficient and predicted correlation coefficient of 0.898 and 0.908, respectively, and calibrated root-mean-square error and predicted root-mean-square error of 0.840 and 0.822, respectively. The study indicates that dielectric spectra combined with artificial neural network and chemometric methods might be applied in nondestructive determination of SSC of apples.
C1 [Guo, Wenchuan; Shang, Liang; Zhu, Xinhua] Northwest A&F Univ, Coll Mech & Elect Engn, Yangling 712100, Shaanxi, Peoples R China.
[Nelson, Stuart O.] ARS, Russell Res Ctr, USDA, Athens, GA 30605 USA.
RP Guo, WC (reprint author), Northwest A&F Univ, Coll Mech & Elect Engn, Yangling 712100, Shaanxi, Peoples R China.
EM guowenchuan69@126.com
FU National Natural Science Foundation of China [31171720]
FX This research was supported by a grant from the National Natural Science
Foundation of China (project no. 31171720).
NR 54
TC 9
Z9 11
U1 9
U2 46
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1935-5130
EI 1935-5149
J9 FOOD BIOPROCESS TECH
JI Food Bioprocess Technol.
PD MAY
PY 2015
VL 8
IS 5
BP 1126
EP 1138
DI 10.1007/s11947-015-1477-0
PG 13
WC Food Science & Technology
SC Food Science & Technology
GA CE8SH
UT WOS:000352113900017
ER
PT J
AU Ding, C
Khir, R
Pan, ZL
Zhao, LM
Tu, K
El-Mashad, H
McHugh, TH
AF Ding, Chao
Khir, Ragab
Pan, Zhongli
Zhao, Liming
Tu, Kang
El-Mashad, Hamed
McHugh, Tara H.
TI Improvement in Shelf Life of Rough and Brown Rice Using Infrared
Radiation Heating
SO FOOD AND BIOPROCESS TECHNOLOGY
LA English
DT Article
DE Rice; Drying; Storage; Infrared heating; Shelf life; Milling quality
ID PHYSICOCHEMICAL PROPERTIES; MILLING QUALITY; STORAGE; BRAN; LIPIDS
AB The objective of this study was to investigate the effect of infrared (IR) heating and tempering treatments on storage stability of rough and brown rice. Samples of freshly harvested medium grain rice variety M206 with initial moisture content of 25.03 +/- 0.21 % (d.b.) were used. They were dried using IR, hot air at 43 A degrees C, and ambient air for comparison. For IR drying, rice were heated to temperature of 60 A degrees C under radiation intensity of 4685 W/m(2), followed by 4 h tempering and natural cooling. The dried samples were divided into two portions, which were respectively used as rough and brown rice for storage at 35 A +/- 1 A degrees C with relative humidity of 65 A +/- 3 % for 10 months. The drying characteristics and milling quality of rice were determined. Free fatty acid, peroxide value, and iodine value were determined to detect any notable degradation of lipids in rough and brown rice during storage. High heating and drying rates of rice were achieved under IR heating. It took only 58 s to heat rough rice to temperature of 60 A degrees C with a corresponding moisture removal of 2.17 percentage points during IR heating. The total moisture removal after natural cooling reached to 3.37 percentage points without additional energy input. IR drying did not show any adverse effects on milling quality of the dried rice. Additionally, it resulted in an effective inactivation of lipase, and consequent improvement in the long-term storage stability of rough and brown rice was achieved under accelerated storage condition. It is concluded that the improvement in rough and brown rice stability during storage can be achieved through drying rough rice using IR heating to temperature of 60 A degrees C followed by tempering for 4 h and natural cooling. IR drying provides a potential to store brown rice instead of rough rice with extended shelf life and reduced cost.
C1 [Ding, Chao; Tu, Kang] Nanjing Agr Univ, Coll Food Sci & Technol, Nanjing 210095, Jiangsu, Peoples R China.
[Ding, Chao; Khir, Ragab; Pan, Zhongli; El-Mashad, Hamed] Univ Calif Davis, Dept Biol & Agr Engn, Davis, CA 95616 USA.
[Khir, Ragab] Suez Canal Univ, Dept Agr Engn, Fac Agr, Ismailia, Egypt.
[Pan, Zhongli; McHugh, Tara H.] ARS, Hlth Proc Foods Res Unit, USDA, Western Reg Res Ctr, Albany, CA 94710 USA.
[Zhao, Liming] E China Univ Sci & Technol, State Key Lab Bioreactor Engn, R&D Ctr Separat & Extract Technol Fermentat Ind, Shanghai 200237, Peoples R China.
[El-Mashad, Hamed] Mansoura Univ, Dept Agr Engn, Fac Agr, Daqahliyah, Egypt.
RP Pan, ZL (reprint author), ARS, Hlth Proc Foods Res Unit, USDA, Western Reg Res Ctr, 800 Buchanan St, Albany, CA 94710 USA.
EM Zhongli.Pan@ars.usda.gov; kangtu@njau.edu.cn
NR 31
TC 5
Z9 6
U1 7
U2 32
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1935-5130
EI 1935-5149
J9 FOOD BIOPROCESS TECH
JI Food Bioprocess Technol.
PD MAY
PY 2015
VL 8
IS 5
BP 1149
EP 1159
DI 10.1007/s11947-015-1480-5
PG 11
WC Food Science & Technology
SC Food Science & Technology
GA CE8SH
UT WOS:000352113900019
ER
PT J
AU Bindlish, R
Jackson, T
Cosh, M
Zhao, TJ
O'Neill, P
AF Bindlish, Rajat
Jackson, Thomas
Cosh, Michael
Zhao, Tianjie
O'Neill, Peggy
TI Global Soil Moisture From the Aquarius/SAC-D Satellite: Description and
Initial Assessment
SO IEEE GEOSCIENCE AND REMOTE SENSING LETTERS
LA English
DT Article
DE Aquarius; microwave radiometer; soil moisture
ID VALIDATION
AB Aquarius satellite observations over land offer a new resource for measuring soil moisture from space. Although Aquarius was designed for ocean salinity mapping, our objective in this investigation is to exploit the large amount of land observations that Aquarius acquires and extend the mission scope to include the retrieval of surface soil moisture. The soil moisture retrieval algorithm development focused on using only the radiometer data because of the extensive heritage of passive microwave retrieval of soil moisture. The single channel algorithm (SCA) was implemented using the Aquarius observations to estimate surface soil moisture. Aquarius radiometer observations from three beams (after bias/gain modification) along with the National Centers for Environmental Prediction model forecast surface temperatures were then used to retrieve soil moisture. Ancillary data inputs required for using the SCA are vegetation water content, land surface temperature, and several soil and vegetation parameters based on land cover classes. The resulting global spatial patterns of soil moisture were consistent with the precipitation climatology. Initial assessments were performed using in situ observations from the U.S. Department of Agriculture Little Washita and Little River watershed soil moisture networks. Results showed good performance by the algorithm for these land surface conditions for the period of August 2011-June 2013 (rmse = 0.031 m(3)/m(3), Bias = -0.007 m(3)/m(3), and R = 0.855). This radiometer-only soil moisture product will serve as a baseline for continuing research on both active and combined passive-active soil moisture algorithms. The products are routinely available through the National Aeronautics and Space Administration data archive at the National Snow and Ice Data Center.
C1 [Bindlish, Rajat; Jackson, Thomas; Cosh, Michael; Zhao, Tianjie] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
[O'Neill, Peggy] NASA, Goddard Space Flight Ctr, Greenbelt, MD 20771 USA.
RP Bindlish, R (reprint author), USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
FU National Aeronautics and Space Administration [NNH10AN10I]
FX This work was supported by the National Aeronautics and Space
Administration under Interagency Agreement NNH10AN10I.
NR 15
TC 20
Z9 20
U1 2
U2 17
PU IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC
PI PISCATAWAY
PA 445 HOES LANE, PISCATAWAY, NJ 08855-4141 USA
SN 1545-598X
EI 1558-0571
J9 IEEE GEOSCI REMOTE S
JI IEEE Geosci. Remote Sens. Lett.
PD MAY
PY 2015
VL 12
IS 5
BP 923
EP 927
DI 10.1109/LGRS.2014.2364151
PG 5
WC Geochemistry & Geophysics; Engineering, Electrical & Electronic; Remote
Sensing; Imaging Science & Photographic Technology
SC Geochemistry & Geophysics; Engineering; Remote Sensing; Imaging Science
& Photographic Technology
GA CD9IQ
UT WOS:000351412200001
ER
PT J
AU McNairn, H
Jackson, TJ
Wiseman, G
Belair, S
Berg, A
Bullock, P
Colliander, A
Cosh, MH
Kim, SB
Magagi, R
Moghaddam, M
Njoku, EG
Adams, JR
Homayouni, S
Ojo, ER
Rowlandson, TL
Shang, JL
Goita, K
Hosseini, M
AF McNairn, Heather
Jackson, Thomas J.
Wiseman, Grant
Belair, Stephane
Berg, Aaron
Bullock, Paul
Colliander, Andreas
Cosh, Michael H.
Kim, Seung-Bum
Magagi, Ramata
Moghaddam, Mahta
Njoku, Eni G.
Adams, Justin R.
Homayouni, Saeid
Ojo, Emmanuel RoTimi
Rowlandson, Tracy L.
Shang, Jiali
Goita, Kalifa
Hosseini, Mehdi
TI The Soil Moisture Active Passive Validation Experiment 2012 (SMAPVEX12):
Prelaunch Calibration and Validation of the SMAP Soil Moisture
Algorithms
SO IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING
LA English
DT Article
DE Passive microwave; soil moisture; Soil Moisture Active Passive (SMAP);
synthetic aperture radar
ID L-BAND; HYDROLOGY EXPERIMENT; RADAR OBSERVATIONS; SAR DATA; RETRIEVAL;
SURFACE; SENSOR; ROUGHNESS; SMEX02; BACKSCATTERING
AB The National Aeronautics and Space Administration (NASA) Soil Moisture Active Passive (SMAP) satellite is scheduled for launch in January 2015. In order to develop robust soil moisture retrieval algorithms that fully exploit the unique capabilities of SMAP, algorithm developers had identified a need for long-duration combined active and passive L-band microwave observations. In response to this need, a joint Canada-U.S. field experiment (SMAPVEX12) was conducted in Manitoba (Canada) over a six-week period in 2012. Several times per week, NASA flew two aircraft carrying instruments that could simulate the observations the SMAP satellite would provide. Ground crews collected soil moisture data, crop measurements, and biomass samples in support of this campaign. The objective of SMAPVEX12 was to support the development, enhancement, and testing of SMAP soil moisture retrieval algorithms. This paper details the airborne and field data collection as well as data calibration and analysis. Early results from the SMAP active radar retrieval methods are presented and demonstrate that relative and absolute soil moisture can be delivered by this approach. Passive active L-band sensor (PALS) antenna temperatures and reflectivity, as well as backscatter, closely follow dry down and wetting events observed during SMAPVEX12. The SMAPVEX12 experiment was highly successful in achieving its objectives and provides a unique and valuable data set that will advance algorithm development.
C1 [McNairn, Heather; Shang, Jiali; Hosseini, Mehdi] Agr & Agri Food Canada, Sci & Technol Branch, Ottawa, ON K1A 0C6, Canada.
[Jackson, Thomas J.; Cosh, Michael H.] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
[Wiseman, Grant] Stantec, Winnipeg, MB R3C 3R6, Canada.
[Belair, Stephane] Environm Canada, Meteorol Res Branch, Dorval, PQ H9P 1J3, Canada.
[Berg, Aaron; Adams, Justin R.; Rowlandson, Tracy L.] Univ Guelph, Dept Geog, Guelph, ON N1G 2W1, Canada.
[Bullock, Paul; Ojo, Emmanuel RoTimi] Univ Manitoba, Dept Soil Sci, Winnipeg, MB R3T 2N2, Canada.
[Colliander, Andreas; Kim, Seung-Bum; Njoku, Eni G.] CALTECH, Jet Prop Lab, Pasadena, CA 91109 USA.
[Magagi, Ramata; Goita, Kalifa; Hosseini, Mehdi] Univ Sherbrooke, Dept Geomat Appl, Sherbrooke, PQ J1K 2R1, Canada.
[Moghaddam, Mahta] Univ Michigan, Dept Elect Engn & Comp Sci, Ann Arbor, MI 48109 USA.
[Homayouni, Saeid] Univ Ottawa, Dept Geog, Ottawa, ON K1N 6N5, Canada.
RP McNairn, H (reprint author), Agr & Agri Food Canada, Sci & Technol Branch, Ottawa, ON K1A 0C6, Canada.
EM heather.mcnairn@agr.gc.ca
OI Cosh, Michael/0000-0003-4776-1918; Homayouni, Saeid/0000-0002-0214-5356
FU Canadian Space Agency
FX The authors would like to thank the entire SMAPVEX12 crew who worked
tirelessly to make the campaign a great success. Canadian participation
in SMAPVEX12 was partially funded by the Canadian Space Agency. The U.S.
Department of Agriculture is an Equal Opportunity Employer. Finally, we
would like to thank the anonymous reviewers who provided many excellent
suggestions to improve this manuscript. The research described in this
publication was carried out in part at the Jet Propulsion Laboratory,
California Institute of Technology, under a contract with the National
Aeronautics and Space Administration.
NR 55
TC 35
Z9 35
U1 7
U2 59
PU IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC
PI PISCATAWAY
PA 445 HOES LANE, PISCATAWAY, NJ 08855-4141 USA
SN 0196-2892
EI 1558-0644
J9 IEEE T GEOSCI REMOTE
JI IEEE Trans. Geosci. Remote Sensing
PD MAY
PY 2015
VL 53
IS 5
BP 2784
EP 2801
DI 10.1109/TGRS.2014.2364913
PG 18
WC Geochemistry & Geophysics; Engineering, Electrical & Electronic; Remote
Sensing; Imaging Science & Photographic Technology
SC Geochemistry & Geophysics; Engineering; Remote Sensing; Imaging Science
& Photographic Technology
GA CD4OO
UT WOS:000351063100039
ER
PT J
AU Kandpal, LM
Lee, S
Kim, MS
Bae, H
Cho, BK
AF Kandpal, Lalit Mohan
Lee, Sangdae
Kim, Moon S.
Bae, Hyungjin
Cho, Byoung-Kwan
TI Short wave infrared (SWIR) hyperspectral imaging technique for
examination of aflatoxin B-1 (AFB(1)) on corn kernels
SO FOOD CONTROL
LA English
DT Article
DE Aflatoxin detection; Corn kernels; SWIR hyperspectral imaging; Partial
least squares discriminant analysis
ID RAPID DETECTION; MAIZE; SPECTROSCOPY; REFLECTANCE; IMAGERY;
CONTAMINATION; QUALITY; SPECTRA
AB Aflatoxins are toxic metabolites produced by the fungi Aspergillus flavus and Aspergillus parasiticus. They can contaminate a wide range of crops before harvest and during storage. Contaminated grains are associated with economic losses for cultivators as well as potential health hazards to both humans and animals. In this study, a short-wave infrared (SWIR) hyperspectral imaging technique was utilized to detect aflatoxin contamination on corn kernels. Corn samples were inoculated with four different aflatoxin B-1 (AFB1) concentrations (10, 100, 500 and 1000 mu g/kg) while control samples were surface-disinfected with a PBS solution. Both infected and control samples were scanned with an SWIR hyperspectral system over the spectral range of 1100-1700 nm. A partial least squares discriminant analysis (PLS-DA) model was developed to categorize control and infected kernels and the highest overall classification accuracy yielded from the developed model was 96.9%. Spectral deviation was observed between the control and inoculated samples as the AFB1 concentrations increased. In addition, the contamination map generated with the PLS-DA model provided the visual appearance of infected samples. Our results suggest that SWIR hyperspectral imaging is a rapid, accurate, and non-destructive technique for the detection of toxic metabolites in grains and could be an alternative to manual techniques. (C) 2014 Elsevier Ltd. All rights reserved.
C1 [Kandpal, Lalit Mohan; Lee, Sangdae; Bae, Hyungjin; Cho, Byoung-Kwan] Chungnam Natl Univ, Dept Biosyst Machinery Engn, Coll Agr & Life Sci, Taejon 305764, South Korea.
[Kim, Moon S.] USDA ARS, Environm Microbial & Food Safety Lab, Beltsville, MD 20705 USA.
RP Cho, BK (reprint author), Chungnam Natl Univ, Dept Biosyst Machinery Engn, Coll Agr & Life Sci, 99 Daehak Ro, Taejon 305764, South Korea.
EM lalitm85@gmail.com; sdlee96@gmail.com; Moon.Kim@ars.usda.gov;
snowballgame@naver.com; chobk@cnu.ac.kr
FU High Value-added Food Technology Development Program; Technology
Commercialization Support Program, Ministry of Agriculture, Food and
Rural Affairs (MAFRA), Republic of Korea
FX This research was supported by High Value-added Food Technology
Development Program and Technology Commercialization Support Program,
Ministry of Agriculture, Food and Rural Affairs (MAFRA), Republic of
Korea.
NR 27
TC 14
Z9 16
U1 6
U2 24
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0956-7135
EI 1873-7129
J9 FOOD CONTROL
JI Food Control
PD MAY
PY 2015
VL 51
BP 171
EP 176
DI 10.1016/j.foodcont.2014.11.020
PG 6
WC Food Science & Technology
SC Food Science & Technology
GA CC7HK
UT WOS:000350538100022
ER
PT J
AU Beck, EA
Lefcourt, AM
Lo, YM
Kim, MS
AF Beck, Elizabeth A.
Lefcourt, Alan M.
Lo, Y. Martin
Kim, Moon S.
TI Use of a portable fluorescence imaging device to facilitate cleaning of
deli slicers
SO FOOD CONTROL
LA English
DT Article
DE Fluorescence imaging; Food safety; Delicatessen; Slicer; Sanitation;
Cleaning
ID SANITATION PROCEDURES; EFFICACY; SYSTEM
AB Cross-contamination is a recognized food safety concern for deli departments, and deli slicers remain a particular concern. This study examines the use of a fluorescence imaging device to detect deli residues on deli slicers. Four cheeses and four processed meats were used for testing. For each commodity, the slicer was scanned at 475, 520, and 675 nm after slicing five times, after washing, and after sanitation. A 405-nm light source was used to excite fluorescence responses. Hyperspectral data were acquired for identified problem areas, and the three wavelengths used for scanning proved adequate to detect all deli residues. Most residues were found in three areas: around the blade and blade guard, on the surface where commodities were pressed during slicing, and on and around the spikes in the arm used to hold commodities. The number of residues detected decreased with cleaning and then sanitation; however, it was impossible to fully clean the slicer without using the imagining device to direct cleaning efforts. It is suggested that a fluorescence imaging device, or something similar, be adopted for routine use in delicatessens. Published by Elsevier Ltd.
C1 [Beck, Elizabeth A.; Lefcourt, Alan M.; Kim, Moon S.] USDA ARS, Environm Microbial & Food Safety Lab, Beltsville, MD 20705 USA.
[Beck, Elizabeth A.; Lo, Y. Martin] Univ Maryland, Dept Nutr & Food Sci, College Pk, MD 20742 USA.
RP Lefcourt, AM (reprint author), Henry A Wallace Beltsville Agr Res Ctr, Bldg 303 Powder Mill Rd,Room 021A, Beltsville, MD 20705 USA.
EM alan.lefcourt@ars.usda.gov
FU USDA; Department of Nutrition and Food Science, University of Maryland,
College Park
FX This work was funded by the USDA. Partial support for Elizabeth A. Beck
was provided by the Department of Nutrition and Food Science, University
of Maryland, College Park. The USDA is an equal opportunity employer.
NR 13
TC 1
Z9 1
U1 7
U2 12
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0956-7135
EI 1873-7129
J9 FOOD CONTROL
JI Food Control
PD MAY
PY 2015
VL 51
BP 256
EP 262
DI 10.1016/j.foodcont.2014.11.031
PG 7
WC Food Science & Technology
SC Food Science & Technology
GA CC7HK
UT WOS:000350538100035
ER
PT J
AU Wang, W
Lawrence, KC
Ni, XZ
Yoon, SC
Heitschmidt, GW
Feldner, P
AF Wang, Wei
Lawrence, Kurt C.
Ni, Xinzhi
Yoon, Seung-Chul
Heitschmidt, Gerald W.
Feldner, Peggy
TI Near-infrared hyperspectral imaging for detecting Aflatoxin B-1 of maize
kernels
SO FOOD CONTROL
LA English
DT Article
DE Aflatoxin B-1 (AFB(1)); Maize; Hyperspectral imaging; Spectral angle
mapper classification (SAM); Score image; Score plot; PCA; n-dimensional
visualization
ID FUSARIUM-DAMAGED WHEAT; REFLECTANCE SPECTROSCOPY; FUMONISIN
CONTAMINATION; NOISE-REDUCTION; RAPID DETECTION; CORN; BIOSYNTHESIS;
HYBRIDS; PCA
AB The feasibility of detecting the Aflatoxin B-1 in maize kernels inoculated with Aspergillus flans conidia in the field was assessed using near-infrared hyperspectral imaging technique. After pixel-level calibration, wavelength dependent offset, the masking method was adopted to reduce the noise and extract region of interest (ROI's) of spectral image, then an explanatory principal component analysis (PCA) followed by inverse PCA and secondary PCA was conducted to enhance the signal to noise ratio (SNR), reduce the dimensionality, and extract valuable information of spectral data. By interactive analysis between score image, score plot and load line plot, the first two PCs were found to indicate the spectral characteristics of healthy and infected maize kernels respectively. And the wavelengths of 1729 and 2344 nm were also identified to indicate AFB(1) exclusively. The n-dimensional visualization method based on PC3 to PC7 was adapted to select the two classes of end members as the input data of the spectral angle mapper (SAM) classifier to separate the aflatoxin infection and clean kernels. The result was compared with chemical analysis of Aflatest (R). And the verification accuracy of pixel level reached 100% except the tip parts of some healthy kernels were falsely identified as aflatoxin contamination. Furthermore, another 26 maize kernels were selected as an independent data set to verify the reproducibility of the method proposed, and the detection accuracy attained to 92.3%, which demonstrated that hyperspectral imaging technique can be used to detect aflatoxin in artificially inoculated maize kernels in the field. (C) 2014 Elsevier Ltd. All rights reserved.
C1 [Wang, Wei] China Agr Univ, Coll Engn, Beijing 100083, Peoples R China.
[Lawrence, Kurt C.; Yoon, Seung-Chul; Heitschmidt, Gerald W.; Feldner, Peggy] USDA ARS, Qual & Safety Assessment Res Unit, Richard B Russell Res Ctr, Athens, GA 30605 USA.
[Ni, Xinzhi] USDA ARS, Crop Genet & Breeding Res Unit, Tifton, GA 31793 USA.
RP Wang, W (reprint author), China Agr Univ, Coll Engn, 17 Tsinghua East Rd, Beijing 100083, Peoples R China.
EM playerwxw@cau.edu.cn
FU China National Science and Technology Support Program [2012BAK08B04]
FX The authors would like to thank Mr. Vernon Savage, engineering
Technician, Mrs. Jerrie Barnett, Biological Laboratory Technician, and
Ms. Candace Betts, Physical Science Technician with the Quality & Safety
Assessment Research Unit, USDA, ARS, and Mrs. Penny J Tapp and Mr.
Trevor Perla, Biological Science Technician with the Crop Genetics and
Breeding Research, USDA, ARS, for their work with fabricating the sample
holders, image acquisition, inoculum and sample preparation and chemical
analysis. Dr. Jia-Sheng Wang, Professor, Department of Environmental
Health Science College of Public Health, University of Georgia, was also
thanked for his guidance on how to handle toxins. This work was
supported financially by the China National Science and Technology
Support Program (2012BAK08B04).
NR 28
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U1 7
U2 25
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0956-7135
EI 1873-7129
J9 FOOD CONTROL
JI Food Control
PD MAY
PY 2015
VL 51
BP 347
EP 355
DI 10.1016/j.foodcont.2014.11.047
PG 9
WC Food Science & Technology
SC Food Science & Technology
GA CC7HK
UT WOS:000350538100047
ER
PT J
AU Williams, MS
Ebel, ED
Allender, HD
AF Williams, Michael S.
Ebel, Eric D.
Allender, Hans D.
TI Industry-level changes in microbial contamination on market hog and
broiler chicken carcasses between two locations in the slaughter process
SO FOOD CONTROL
LA English
DT Article
DE Salmonella; Campylobacter; Escherichia coli; Risk assessment; Indicator
organism
ID PROBABLE NUMBER DATA; UNITED-STATES; ESCHERICHIA-COLI;
PROBABILITY-DISTRIBUTION; POULTRY CARCASSES; SALMONELLA; BEEF;
ESTABLISHMENTS; DECONTAMINATION; DISTRIBUTIONS
AB Pork and poultry products have been implicated in a substantial proportion of microbial foodborne illnesses such as salmonellosis and campylobacteriosis. Understanding the similarities and differences between the effectiveness of interventions applied during slaughter to the two commodities can help identify opportunities to reduce the risk of foodborne illness. This study uses data from two national surveys and censored data techniques to assess the concentrations of microbial contamination on broiler chickens and market hogs at two points in the slaughter process. Statistical distributions are fitted to estimate the average concentrations of microbial contamination, the variability in these concentrations, and the average reduction in contamination between the two locations for pork and chicken produced in the United States. The concentrations of Salmonella and generic Escherichia coli (GEC) are estimated for hog carcasses; the concentrations of Salmonella, GEC, and Campylobacter are estimated for chicken carcasses. These datasets are also used to study the magnitude of seasonal changes in concentrations of microbial contamination and to demonstrate the potential utility of using the reduction in the average aerobic plate count between the pre-evisceration and post-chill stages of the slaughter process as an indicator of the corresponding reduction in other species of bacteria. The study finds interventions for hog carcasses achieve much larger reductions in contamination than those applied to chicken. However, the variability in the concentration of Salmonella contamination on pork is significantly higher, suggesting an opportunity to decrease risk by ensuring more consistent reductions across the industry. The study also finds, for both commodities, that the log(10) reductions in the concentrations of GEC are similar to the log(10) reductions in Salmonella, while the log reduction in Campylobacter on chicken was substantially greater than for both GEC and Salmonella. Additional analyses demonstrate modest seasonal increases in contamination only on hog carcasses as well as demonstrating that reductions in APC are indicative of reductions in all other organisms, suggesting its potential as an effective indicator organism. Published by Elsevier Ltd.
C1 [Williams, Michael S.; Ebel, Eric D.] USDA, Off Publ Hlth Sci, Food Safety & Inspect Serv, Ft Collins, CO 80526 USA.
[Allender, Hans D.] USDA, Off Publ Hlth Sci, Food Safety & Inspect Serv, Washington, DC 20250 USA.
RP Williams, MS (reprint author), USDA, Off Publ Hlth Sci, Food Safety & Inspect Serv, 2150 Ctr Ave,Bldg D, Ft Collins, CO 80526 USA.
EM mike.williams@fsis.usda.gov
NR 37
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U1 3
U2 25
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0956-7135
EI 1873-7129
J9 FOOD CONTROL
JI Food Control
PD MAY
PY 2015
VL 51
BP 361
EP 370
DI 10.1016/j.foodcont.2014.11.039
PG 10
WC Food Science & Technology
SC Food Science & Technology
GA CC7HK
UT WOS:000350538100049
ER
PT J
AU Kale, MS
Yadav, MP
Hicks, KB
Hanah, K
AF Kale, Madhuvanti S.
Yadav, Madhav P.
Hicks, Kevin B.
Hanah, Kyle
TI Concentration and shear rate dependence of solution viscosity for
arabinoxylans from different sources
SO FOOD HYDROCOLLOIDS
LA English
DT Article
DE Arabinoxylans; Rheological properties; Critical concentration
ID CORN FIBER GUM; EMULSIFYING PROPERTIES; MAIZE BRAN; WHEAT BRAN;
EXTRACTION; GLUCURONOARABINOXYLANS; POLYSACCHARIDES
AB Arabinoxylans are cell wall polysaccharides abundant in plants. Alkaline extraction is commonly used to isolate arabinoxylans from cell wall rich materials, such as cereal brans, crop residues etc. While arabinoxylans from certain sources such as wheat endosperm, corn bran and rye bran have been widely studied, there is a lack of studies focusing on the rheological and molecular properties of arabinoxylans from a wide variety of different sources. In this study, we report the concentration and shear rate dependence of solution viscosity of alkali extractable arabinoxylans from seven different sources. All the polymers are found to show Newtonian flow behavior, particularly at low concentrations, which is considered unusual in high molecular weight polysaccharides. The concentration dependence data shows the presence of a single critical concentration, suggestive of random coil conformation, while the rate of viscosity change in the two regimes suggests a more rigid conformation. This seemingly contradictory behavior is explained on the basis of a semi-flexible conformation of arabinoxylans in solution, which has been reported previously. The critical concentration of the arabinoxylans showed a strong correlation with their molecular weight, thus suggesting that fine structural differences do not significantly affect this aspect of rheological behavior. This is the first comparative study of alkali soluble arabinoxylans from different sources, and suggests that this class of polymers has significant similarities in spite of heterogeneity of fine structure. (C) 2015 Elsevier Ltd. All rights reserved.
C1 [Kale, Madhuvanti S.; Yadav, Madhav P.; Hicks, Kevin B.] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
[Kale, Madhuvanti S.; Hanah, Kyle] Z Trim Holdings Inc, Mundelein, IL 60060 USA.
RP Kale, MS (reprint author), 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM madhuvanti.kale@ztrim.com
NR 27
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U1 8
U2 28
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0268-005X
EI 1873-7137
J9 FOOD HYDROCOLLOID
JI Food Hydrocolloids
PD MAY
PY 2015
VL 47
BP 178
EP 183
DI 10.1016/j.foodhyd.2015.01.012
PG 6
WC Chemistry, Applied; Food Science & Technology
SC Chemistry; Food Science & Technology
GA CC8RQ
UT WOS:000350636200021
ER
PT J
AU Cameron, RG
Kim, Y
Galant, AL
Luzio, GA
Tzen, JTC
AF Cameron, Randall G.
Kim, Yang
Galant, Ashley L.
Luzio, Gary A.
Tzen, Jason T. C.
TI Pectin homogalacturonans: Nanostructural characterization of
methylesterified domains
SO FOOD HYDROCOLLOIDS
LA English
DT Article
DE Pectin; Homogalacturonan; Cell wall; Hydrocolloid; Pectin
methylesterase; Pectinesterase
ID GALACTURONIC ACID DISTRIBUTION; PLANT-CELL WALL; DE-ESTERIFICATION;
ENZYME MODE; SUBSTITUTION PATTERNS; NMR-SPECTROSCOPY; PH;
ENDOPOLYGALACTURONASE; CHROMATOGRAPHY; GELS
AB Functionality of pectic hydrocolloids is largely dependent on the two major domains commonly found in their homogalacturonan regions, i.e., methylester protected domains (MPDs) and non methylesterified domains (NMDs). MPDs can participate in hydrogen bonding and hydrophobic interactions but unlike the NMDs they are incapable of calcium mediated cross-linking. MPDs also are inaccessible to endo polygalacturonase attack while NMDs are susceptible. We isolated and characterized MPDs contained within homogalacturonans that had been demethylesterified either by plant pectin methylesterases or chemically by base saponification. Molecular weight (similar to 9500-14,000 Da) and degree of methylesterification (DM; similar to 63%-94%) of remnant MPDs were measured. Subsequently the MPDs were base saponified at 4 degrees C. The resulting demethylesterified oligomers were separated, visualized and quantified. Population parameters estimated were the average number of MPDs per pectin molecule, the sum of galacturonic acid units in MPDs per molecule, the average MPD size and the number of "average" size MPDs per molecule. Analysis of variance and Tukey's Multiple Comparison Test indicated significant differences in MPDs based on DM and the method of demethylesterification. Pearson's correlation coefficients were calculated for MPD parameters, previously published structural data from NMDs and rheological properties of the demethylesterified homogalacturonans from the enzyme treatments. Significant correlations were observed for DM, absolute degree of blockiness, G', NMD and MPD parameters. When coupled with methods to characterize NMDs these techniques provide an opportunity to statistically describe both highly charged and more neutral domains in a population of pectin molecules. Published by Elsevier Ltd.
C1 [Cameron, Randall G.; Kim, Yang; Galant, Ashley L.; Luzio, Gary A.] ARS, Citrus & Other Subtrop Prod Res Unit, US Hort Res Lab, USDA, Ft Pierce, FL 34945 USA.
[Tzen, Jason T. C.] Natl Chung Hsing Univ, Grad Inst Biotechnol, Taichung 402, Taiwan.
RP Cameron, RG (reprint author), ARS, Citrus & Other Subtrop Prod Res Unit, US Hort Res Lab, USDA, 2001 South Rock Rd, Ft Pierce, FL 34945 USA.
EM Randall.Cameron@ars.usda.gov; ya_kim@hotmail.com; a.l.galant@gmail.com;
Gary.Luzio@ars.usda.gov; TCTZEN@dragon.nchu.edu.tw
FU USDA-NRI Program 71.1 [2009-35503-05205]; USDA, ARS Postdoctoral
Research Associate Program; Basic Science Research Program through the
National Research Foundation of Korea (NRF) - Ministry of Science, ICT &
Future Planning [2014052807]; USDA ARS CRIS [6618-41000-015-00D,
6618-41000-016-00D]
FX This research was supported by a grant from USDA-NRI Program 71.1,
Improving Food Quality and Value (#2009-35503-05205), the USDA, ARS
Postdoctoral Research Associate Program-Class of 2011, the Basic Science
Research Program through the National Research Foundation of Korea (NRF)
funded by the Ministry of Science, ICT & Future Planning (No.
2014052807) and USDA ARS CRIS 6618-41000-015-00D and USDA ARS CRIS
6618-41000-016-00D. These Funding Sources had no role in study design;
in the collection, analysis, and interpretation of data; in the writing
of the report; and in the decision to submit the paper for publication.
NR 55
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PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0268-005X
EI 1873-7137
J9 FOOD HYDROCOLLOID
JI Food Hydrocolloids
PD MAY
PY 2015
VL 47
BP 184
EP 190
DI 10.1016/j.foodhyd.2015.01.036
PG 7
WC Chemistry, Applied; Food Science & Technology
SC Chemistry; Food Science & Technology
GA CC8RQ
UT WOS:000350636200022
ER
PT J
AU Cormier, N
Twilley, RR
Ewel, KC
Krauss, KW
AF Cormier, Nicole
Twilley, Robert R.
Ewel, Katherine C.
Krauss, Ken W.
TI Fine root productivity varies along nitrogen and phosphorus gradients in
high-rainfall mangrove forests of Micronesia
SO HYDROBIOLOGIA
LA English
DT Article
DE Carbon allocation; Roots; Nutrients; Productivity; Mangrove; Pacific
high islands; Micronesia
ID RISING SEA-LEVEL; RHIZOPHORA-MANGLE; NUTRIENT AVAILABILITY;
AVICENNIA-GERMINANS; SPATIAL-PATTERNS; ORGANIC-MATTER; STANDING CROP;
BIOMASS; ECOSYSTEMS; DYNAMICS
AB Belowground biomass is thought to account for much of the total biomass in mangrove forests and may be related to soil fertility. The Yela River and the Sapwalap River, Federated States of Micronesia, contain a natural soil resource gradient defined by total phosphorus (P) density ranging from 0.05 to 0.42 mg cm(-3) in different hydrogeomorphic settings. We used this fertility gradient to test the hypothesis that edaphic conditions constrain mangrove productivity through differential allocation of biomass to belowground roots. We removed sequential cores and implanted root ingrowth bags to measure in situ biomass and productivity, respectively. Belowground root biomass values ranged among sites from 0.448 +/- A 0.096 to 2.641 +/- A 0.534 kg m(-2). Root productivity (roots a parts per thousand currency sign20 mm) did not vary significantly along the gradient (P = 0.3355) or with P fertilization after 6 months (P = 0.2968). Fine root productivity (roots a parts per thousand currency sign2 mm), however, did vary significantly among sites (P = 0.0363) and ranged from 45.88 +/- A 21.37 to 118.66 +/- A 38.05 g m(-2) year(-1). The distribution of total standing root biomass and fine root productivity followed patterns of N:P ratios as hypothesized, with larger root mass generally associated with lower relative P concentrations. Many of the processes of nutrient acquisition reported from nutrient-limited mangrove forests may also occur in forests of greater biomass and productivity when growing along soil nutrient gradients.
C1 [Cormier, Nicole; Ewel, Katherine C.] US Forest Serv, USDA, Inst Pacific Isl Forestry, Hilo, HI 96720 USA.
[Cormier, Nicole; Twilley, Robert R.] Univ Louisiana Lafayette, Dept Biol, Lafayette, LA 70506 USA.
RP Cormier, N (reprint author), US Geol Survey, Natl Wetlands Res Ctr, 700 Cajundome Blvd, Lafayette, LA 70506 USA.
EM cormiern@usgs.gov
FU University of Louisiana at Lafayette Center for Ecology and
Environmental Technology
FX We would like to thank the Kosrae Island Resource Management Authority
and the Ponape Agriculture and Trade School for the use of their
facilities and equipment and for providing field assistance while on
island. Erick E. Waguk, Jason Jack, Simpson Abraham, Robert D. Hauff,
Fr. Joseph Billotti, and Fr. Greg Muckenhaupt were especially helpful.
Many thanks to Donald R. Cahoon, J. Andy Nyman, and John Meriwether for
their reviews, scientific input, and support throughout this study. We
would also like to thank Rassa Dale and Jim Baldwin for their
statistical expertise and Karen L. McKee and Brian Fry for critical
reviews of earlier drafts of this manuscript. We acknowledge the
University of Louisiana at Lafayette Center for Ecology and
Environmental Technology for supporting NC as a graduate assistant
during the study, and providing storage, laboratory, and bench space for
sifting through root samples. The USGS Climate and Land Use Change
Research and Development Program facilitated the production of this
manuscript by supporting NC and KWK. Any use of trade, product, or firm
names is for descriptive purposes only and does not imply endorsement by
the U.S. Government.
NR 97
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PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0018-8158
EI 1573-5117
J9 HYDROBIOLOGIA
JI Hydrobiologia
PD MAY
PY 2015
VL 750
IS 1
BP 69
EP 87
DI 10.1007/s10750-015-2178-4
PG 19
WC Marine & Freshwater Biology
SC Marine & Freshwater Biology
GA CC3JT
UT WOS:000350244600006
ER
PT J
AU Garrido-Novell, C
Garrido-Varo, A
Perez-Marin, D
Guerrero-Ginel, JE
Kim, M
AF Garrido-Novell, C.
Garrido-Varo, A.
Perez-Marin, D.
Guerrero-Ginel, J. E.
Kim, M.
TI Quantification and spatial characterization of moisture and NaCl content
of Iberian dry-cured ham slices using NIR hyperspectral imaging
SO JOURNAL OF FOOD ENGINEERING
LA English
DT Article
DE NaCl; Moisture content; Hyperspectral; Validation; Textural analysis;
Cured Iberian ham
ID CHEMICAL-COMPOSITION; NONDESTRUCTIVE PREDICTION; WATER ACTIVITY; SALT
CONTENT; REGRESSION; CLASSIFICATION; SPECTROSCOPY; CALIBRATION; QUALITY;
SURFACE
AB Hyperspectral imaging technology is increasingly regarded as a powerful tool for the classification and spatial quantification of a wide range of agrofood product properties. Taking into account the difficulties involved in validating hyperspectral calibrations, the models constructed here proved moderately accurate for predicting NaCl content, while good accuracy was obtained for moisture content (Shenk and Westerhouse, 1996) in Iberian dry-cured ham slices. Using spatial information provided by chemical imaging, the distribution of both analytes was characterized by textural analysis as a function of muscle and commercial category. (C) 2014 Elsevier Ltd. All rights reserved.
C1 [Garrido-Novell, C.; Garrido-Varo, A.; Perez-Marin, D.; Guerrero-Ginel, J. E.] Univ Cordoba, Dept Anim Prod, Prod Syst Engn Unit, Cordoba 14014, Spain.
[Kim, M.] USDA, Beltsville, MD 20705 USA.
RP Garrido-Novell, C (reprint author), Univ Cordoba, Dept Anim Prod, Prod Syst Engn Unit, Madrid Natl Rd,396 Km, Cordoba 14014, Spain.
EM g52ganoc@uco.es; pa1gavaa@uco.es; dcperez@uco.es; pa1gugij@uco.es;
moon.kim@ars.usda.gov
FU AGR [5129]; Spanish Ministry of Education
FX The authors acknowledge the financial support of the Excellence Project
AGR 5129, "MEMS and NIRS-imaging sensors for non-destructive analysis of
vegetable and animal products". Cristobal Garrido Novell acknowledges
the financial support of the Spanish Ministry of Education as a fellow
of the "University Teacher Training" Program (Formacion del Profesorado
Universitario, FPU) and the assistance of Jose Manuel Amigo and Juan
Fernandez Novales.
NR 32
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PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0260-8774
EI 1873-5770
J9 J FOOD ENG
JI J. Food Eng.
PD MAY
PY 2015
VL 153
BP 117
EP 123
PG 7
WC Engineering, Chemical; Food Science & Technology
SC Engineering; Food Science & Technology
GA CC1DD
UT WOS:000350080500015
ER
PT J
AU Cheuk, SY
Shih, FF
Champagne, ET
Daigle, KW
Patindo, JA
Mattison, CP
Boue, SM
AF Cheuk, Sherwin Y.
Shih, Frederick F.
Champagne, Elaine T.
Daigle, Kim W.
Patindo, James A.
Mattison, Christopher P.
Boue, Stephen M.
TI Nano-encapsulation of coenzyme Q(10) using octenyl succinic anhydride
modified starch
SO FOOD CHEMISTRY
LA English
DT Article
DE Coenzyme Q10; Nano-encapsulation; Nano-emulsion; Octenyl succinic
anhydride; Modified starch; High pressure homogenisation; Zeta
potential; Supercritical fluid extraction
ID MITOCHONDRIAL ENCEPHALOMYOPATHY; DRUG DISCOVERY; DEFICIENCY;
MICROFLUIDIZATION; NANOPARTICLES; EMULSIONS; DELIVERY
AB Octenyl succinic anhydride modified starch (OSA-ST) was used to encapsulate coenzyme Q(10) (CoQ(10)). CoQ(10) was dissolved in rice bran oil and incorporated into an aqueous OSA-ST solution. High pressure homogenisation of the mixture was conducted at 170 MPa for 56 cycles. The resulting emulsion had a particle size range of 200-300 nm and the absolute zeta potential varied between 8.4 and 10.6 mV. CoQ(10) retention of the emulsion and freeze dried products, determined by a hexane rinse, was 98.2%. Reconstitution of the freeze dried product in Mcllvaine citrate-phosphate buffers with pH values of 35 and temperatures at 4 and 25 degrees C had very little effect on the range and distribution of the nanoparticles' size. The inflection point of the zeta potential and pH plot occurred at the first pKa of succinic acid (pH 4.2), indicating succinate as the main influence over zeta potential. (C) 2014 Elsevier Ltd. All rights reserved.
C1 [Cheuk, Sherwin Y.; Shih, Frederick F.; Champagne, Elaine T.; Daigle, Kim W.; Patindo, James A.; Mattison, Christopher P.; Boue, Stephen M.] ARS, So Reg Res Ctr, USDA, New Orleans, LA 70124 USA.
RP Boue, SM (reprint author), ARS, So Reg Res Ctr, USDA, 1100 Robert E Lee Blvd, New Orleans, LA 70124 USA.
EM steve.boue@ars.usda.gov
NR 26
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U1 9
U2 105
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0308-8146
EI 1873-7072
J9 FOOD CHEM
JI Food Chem.
PD MAY 1
PY 2015
VL 174
BP 585
EP 590
DI 10.1016/j.foodchem.2014.11.031
PG 6
WC Chemistry, Applied; Food Science & Technology; Nutrition & Dietetics
SC Chemistry; Food Science & Technology; Nutrition & Dietetics
GA AZ2UP
UT WOS:000348088000080
PM 25529723
ER
PT J
AU He, YP
Reed, S
Bhunia, AK
Gehring, A
Nguyen, LH
Irwin, PL
AF He, Yiping
Reed, Sue
Bhunia, Arun K.
Gehring, Andrew
Ly-Huong Nguyen
Irwin, Peter L.
TI Rapid identification and classification of Campylobacter spp. using
laser optical scattering technology
SO FOOD MICROBIOLOGY
LA English
DT Article
DE Campylobacter; Detection; Optical laser scattering technology; Light
scatter image; Passive filtration
ID REAL-TIME PCR; LISTERIA-MONOCYTOGENES; CHICKEN CARCASSES;
ESCHERICHIA-COLI; POULTRY PRODUCTS; JEJUNI; PATHOGENS; CONTAMINATION;
ASSAY; CONSUMPTION
AB Campylobacter jejuni and Campylobacter coli are the two important species responsible for most of the Campylobacter infections in humans. Reliable isolation and detection of Campylobacter spp. from food samples are challenging due to the interferences from complex food substances and the fastidious growth requirements of this organism. In this study, a novel biosensor-based detection called BARDOT (BActerial Rapid Detection using Optical scattering Technology) was developed for high-throughput screening of Campylobacter colonies grown on an agar plate without disrupting the intact colonies. Image pattern characterization and principal component analysis (PCA) of 6909 bacterial colonies showed that the light scatter patterns of C. jejuni and C. coli were strikingly different from those of Salmonella spp., Escherichia coli O157:H7, and Listeria monocytogenes. Examination of a mixed culture of these microorganisms revealed 85% (34/40) accuracy in differentiating Campylobacter from the other three major foodborne pathogens based on the similarity to the scatter patterns in an established library. The application of BARDOT in real food has been addressed through the analysis of Campylobacter spiked ground chicken and naturally contaminated fresh chicken pieces. Combined with real-time PCR verification, BARDOT was able to identify Campylobacter isolates from retail chicken. Moreover, applying passive filtration to food samples facilitated the isolation of pure Campylobacter colonies and therefore overcame the interference of the food matrix on BARDOT analysis. Published by Elsevier Ltd.
C1 [He, Yiping; Reed, Sue; Gehring, Andrew; Ly-Huong Nguyen; Irwin, Peter L.] ARS, Mol Characterizat Foodborne Pathogens Res Unit, USDA, ERRC, Wyndmoor, PA 19038 USA.
[Bhunia, Arun K.] Purdue Univ, Dept Food Sci, Mol Food Microbiol Lab, W Lafayette, IN 47907 USA.
RP He, YP (reprint author), ARS, USDA, ERRC, 600 East Mermaid Lane, Wyndmoor, PA 19038 USA.
EM yiping.he@ars.usda.gov
FU Agriculture Research Service, U.S. Department of Agriculture
[8072-42000-072-02G]; Center for Food Safety Engineering at Purdue
University
FX This research was supported by a cooperative agreement between the
Agriculture Research Service, U.S. Department of Agriculture (project
8072-42000-072-02G) and the Center for Food Safety Engineering at Purdue
University. We thank Dr. Beatriz Quinones at the USDA-ARS-WRRC for
supplying the cellulose ester membrane filters, and Drs. Nereus Gunther
and George Paoli at the USDA-ARS-ERRC for providing some of the
bacterial strains.
NR 34
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U1 3
U2 71
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0740-0020
EI 1095-9998
J9 FOOD MICROBIOL
JI Food Microbiol.
PD MAY
PY 2015
VL 47
BP 28
EP 35
DI 10.1016/j.fm.2014.11.004
PG 8
WC Biotechnology & Applied Microbiology; Food Science & Technology;
Microbiology
SC Biotechnology & Applied Microbiology; Food Science & Technology;
Microbiology
GA AY5OL
UT WOS:000347621700004
PM 25583335
ER
PT J
AU Kim, HJ
Hinchliffe, DJ
Triplett, BA
Chen, ZJ
Stelly, DM
Yeater, KM
Moon, HS
Gilbert, MK
Thyssen, GN
Turley, RB
Fang, DD
AF Kim, Hee Jin
Hinchliffe, Doug J.
Triplett, Barbara A.
Chen, Z. Jeffrey
Stelly, David M.
Yeater, Kathleen M.
Moon, Hong S.
Gilbert, Matthew K.
Thyssen, Gregory N.
Turley, Rickie B.
Fang, David D.
TI Phytohormonal Networks Promote Differentiation of Fiber Initials on
Pre-Anthesis Cotton Ovules Grown In Vitro and In Planta
SO PLOS ONE
LA English
DT Article
ID GOSSYPIUM-HIRSUTUM L.; MYB TRANSCRIPTION FACTOR; GENE-EXPRESSION;
CELL-WALL; ALLOTETRAPLOID COTTON; TRICHOME DEVELOPMENT; VACUOLAR
INVERTASE; ABSCISIC-ACID; AUXIN; ELONGATION
AB The number of cotton (Gossypium sp.) ovule epidermal cells differentiating into fiber initials is an important factor affecting cotton yield and fiber quality. Despite extensive efforts in determining the molecular mechanisms regulating fiber initial differentiation, only a few genes responsible for fiber initial differentiation have been discovered. To identify putative genes directly involved in the fiber initiation process, we used a cotton ovule culture technique that controls the timing of fiber initial differentiation by exogenous phytohormone application in combination with comparative expression analyses between wild type and three fiberless mutants. The addition of exogenous auxin and gibberellins to pre-anthesis wild type ovules that did not have visible fiber initials increased the expression of genes affecting auxin, ethylene, ABA and jasmonic acid signaling pathways within 1 h after treatment. Most transcripts expressed differentially by the phytohormone treatment in vitro were also differentially expressed in the ovules of wild type and fiberless mutants that were grown in planta. In addition to MYB25-like, a gene that was previously shown to be associated with the differentiation of fiber initials, several other differentially expressed genes, including auxin/indole-3-acetic acid (AUX/IAA) involved in auxin signaling, ACC oxidase involved in ethylene biosynthesis, and abscisic acid (ABA) 8'-hydroxylase an enzyme that controls the rate of ABA catabolism, were co-regulated in the pre-anthesis ovules of both wild type and fiberless mutants. These results support the hypothesis that phytohormonal signaling networks regulate the temporal expression of genes responsible for differentiation of cotton fiber initials in vitro and in planta.
C1 [Kim, Hee Jin; Hinchliffe, Doug J.; Triplett, Barbara A.; Moon, Hong S.; Gilbert, Matthew K.; Thyssen, Gregory N.; Fang, David D.] USDA ARS, SRRC, Cotton Fiber Biosci Res Unit, New Orleans, LA 70153 USA.
[Chen, Z. Jeffrey] Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA.
[Chen, Z. Jeffrey] Univ Texas Austin, Ctr Computat Biol & Bioinformat, Austin, TX 78712 USA.
[Stelly, David M.] Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA.
[Yeater, Kathleen M.] USDA ARS, Plains Area, Ft Collins, CO 80522 USA.
[Turley, Rickie B.] USDA ARS, Crop Genet Res Unit, Stoneville, MS 38776 USA.
RP Kim, HJ (reprint author), USDA ARS, SRRC, Cotton Fiber Biosci Res Unit, New Orleans, LA 70153 USA.
EM heejin.kim@ars.usda.gov
FU USDA-ARS CRIS Project [6435-21000-016-00D]; NSF [DBI0624077,
ISO1025947]; Cotton Incorporated [07-161]
FX This research was supported by the USDA-ARS CRIS Project
#6435-21000-016-00D, NSF DBI0624077 and ISO1025947, and Cotton
Incorporated-sponsored project #07-161. The funders had no role in study
design, data collection and analysis, decision to publish, or
preparation of the manuscript.
NR 69
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U1 6
U2 14
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 30
PY 2015
VL 10
IS 4
AR e0125046
DI 10.1371/journal.pone.0125046
PG 21
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CH0MA
UT WOS:000353713100062
PM 25927364
ER
PT J
AU Segura, C
Caldwell, P
Sun, G
McNulty, S
Zhang, Y
AF Segura, Catalina
Caldwell, Peter
Sun, Ge
McNulty, Steve
Zhang, Yang
TI A model to predict stream water temperature across the conterminous USA
SO HYDROLOGICAL PROCESSES
LA English
DT Article
DE stream water temperature; water quality modelling; thermal sensitivity
ID CLIMATE-CHANGE IMPACT; AIR-TEMPERATURE; UNITED-STATES; POTENTIAL
IMPACTS; RIVER TEMPERATURE; MOUNTAIN STREAMS; UPLAND STREAM; POWER-LAWS;
FLOW; REGRESSION
AB Stream water temperature (t(s)) is a critical water quality parameter for aquatic ecosystems. However, t(s) records are sparse or nonexistent in many river systems. In this work, we present an empirical model to predict t(s) at the site scale across the USA. The model, derived using data from 171 reference sites selected from the Geospatial Attributes of Gages for Evaluating Streamflow database, describes the linear relationship between monthly mean air temperature (t(a)) and t(s). Multiple linear regression models are used to predict the slope (m) and intercept (b) of the t(a)-t(s) linear relation as a function of climatic, hydrologic and land cover characteristics. Model performance to predict t(s) resulted in a mean Nash-Sutcliffe efficiency coefficient of 0.78 across all sites. Application of the model to predict t(s) at additional 89 nonreference sites with a higher human alteration yielded a mean Nash-Sutcliffe value of 0.45. We also analysed seasonal thermal sensitivity (m) and found strong hysteresis in the t(a)-t(s) relation. Drainage area exerts a strong control on m in all seasons, whereas the cooling effect of groundwater was only evident for the spring and fall seasons. However, groundwater contributions are negatively related to mean t(s) in all seasons. Finally, we found that elevation and mean basin slope are negatively related to mean t(s) in all seasons, indicating that steep basins tend to stay cooler because of shorter residence times to gain heat from their surroundings. This model can potentially be used to predict climate change impacts on t(s) across the USA. Copyright (c) 2014 John Wiley & Sons, Ltd.
C1 [Segura, Catalina; Zhang, Yang] N Carolina State Univ, Marine Earth & Atmospher Sci Dept, Raleigh, NC 27695 USA.
[Segura, Catalina] Oregon State Univ, Forestry Engn Resources & Management Dept, Corvallis, OR 97331 USA.
[Caldwell, Peter] ARS, Ctr Forest Watershed Sci, USDA, Coweeta Hydrol Lab, Otto, NC 28763 USA.
[Sun, Ge; McNulty, Steve] US Forest Serv, Eastern Forest Environm Threat Assessment Ctr, USDA, Raleigh, NC 27606 USA.
RP Segura, C (reprint author), Oregon State Univ, Forestry Engn, Resources & Management Dept, 280 Peavy Hall, Corvallis, OR 97331 USA.
EM catalina.segura@oregonstate.edu
FU National Science Foundation EaSM programme at NCSU [AGS-1049200];
Eastern Forest Environment Threat Assessment Center (EFETAC), USDA
Forest Service
FX This study was funded by the National Science Foundation EaSM programme
(AGS-1049200) at NCSU and the Eastern Forest Environment Threat
Assessment Center (EFETAC), USDA Forest Service.
NR 97
TC 6
Z9 7
U1 8
U2 29
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0885-6087
EI 1099-1085
J9 HYDROL PROCESS
JI Hydrol. Process.
PD APR 30
PY 2015
VL 29
IS 9
BP 2178
EP 2195
DI 10.1002/hyp.10357
PG 18
WC Water Resources
SC Water Resources
GA CG2JP
UT WOS:000353101000009
ER
PT J
AU Caldwell, P
Segura, C
Laird, SG
Sun, G
McNulty, SG
Sandercock, M
Boggs, J
Vose, JM
AF Caldwell, Peter
Segura, Catalina
Laird, Shelby Gull
Sun, Ge
McNulty, Steven G.
Sandercock, Maria
Boggs, Johnny
Vose, James M.
TI Short-term stream water temperature observations permit rapid assessment
of potential climate change impacts
SO HYDROLOGICAL PROCESSES
LA English
DT Article
DE stream temperature; climate variability; change; water quality; aquatic
ecology; modelling; adaptation
ID AIR-TEMPERATURE; RIVER TEMPERATURE; APPALACHIAN TROUT; DISSOLVED-OXYGEN;
THERMAL REGIME; DYNAMICS; MODEL; PERSPECTIVE; CALIFORNIA; RESPONSES
AB Assessment of potential climate change impacts on stream water temperature (T-s) across large scales remains challenging for resource managers because energy exchange processes between the atmosphere and the stream environment are complex and uncertain, and few long-term datasets are available to evaluate changes over time. In this study, we demonstrate how simple monthly linear regression models based on short-term historical T-s observations and readily available interpolated air temperature (T-a) estimates can be used for rapid assessment of historical and future changes in T-s. Models were developed for 61 sites in the southeastern USA using 18months of observations and were validated at sites with longer periods of record. The T-s models were then used to estimate temporal changes in T-s at each site using both historical estimates and future T-a projections. Results suggested that the linear regression models adequately explained the variability in T-s across sites, and the relationships between T-s and T-a remained consistent over 37years. We estimated that most sites had increases in historical annual mean T-s between 1961 and 2010 (mean of +0.11 degrees C decade(-1)). All 61 sites were projected to experience increases in T-s from 2011 to 2060 under the three climate projections evaluated (mean of +0.41 degrees C decade(-1)). Several of the sites with the largest historical and future T-s changes were located in ecoregions home to temperature-sensitive fish species. This methodology can be used by resource managers for rapid assessment of potential climate change impacts on stream water temperature. Copyright (c) 2014 John Wiley & Sons, Ltd.
C1 [Caldwell, Peter] US Forest Serv, Coweeta Hydrol Lab, Ctr Forest Watershed Sci, USDA, Otto, NC 28763 USA.
[Segura, Catalina] N Carolina State Univ, Dept Marine Earth & Atmospher Sci, Raleigh, NC 27695 USA.
[Segura, Catalina] Oregon State Univ, Coll Forestry Forestry Engn Resources & Managemen, Corvallis, OR 97331 USA.
[Laird, Shelby Gull] Charles Sturt Univ, Inst Land Water & Soc, Sch Environm Sci, Albury, NSW, Australia.
[Boggs, Johnny] US Forest Serv, Eastern Forest Environm Threat Assessment Ctr, USDA, Raleigh, NC USA.
[Sandercock, Maria] Univ Washington, Sch Environm & Forest Sci, Seattle, WA USA.
[Sandercock, Maria] Univ Washington, Dept Urban Planning, Seattle, WA USA.
[Vose, James M.] N Carolina State Univ, Ctr Integrated Forest Sci, Southern Res Stn, USDA,US Forest Serv, Raleigh, NC 27695 USA.
RP Caldwell, P (reprint author), US Forest Serv, USDA, Ctr Forest Watershed Sci, Coweeta Hydrol Lab, Otto, NC 28763 USA.
EM pcaldwell02@fs.fed.us
OI Laird, Shelby/0000-0003-4986-2181
FU Eastern Forest Environmental Threat Assessment Center; Center for
Watershed Research of the USDA Forest Service Southern Research Station;
National Science Foundation EaSM programme [AGS-1049200]
FX We acknowledge the financial support from the Eastern Forest
Environmental Threat Assessment Center and Center for Watershed Research
of the USDA Forest Service Southern Research Station and the National
Science Foundation EaSM programme (AGS-1049200). We also thank Timothy
Mayer and an anonymous peer reviewer for their constructive comments
that significantly improved this work.
NR 49
TC 3
Z9 3
U1 2
U2 22
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0885-6087
EI 1099-1085
J9 HYDROL PROCESS
JI Hydrol. Process.
PD APR 30
PY 2015
VL 29
IS 9
BP 2196
EP 2211
DI 10.1002/hyp.10358
PG 16
WC Water Resources
SC Water Resources
GA CG2JP
UT WOS:000353101000010
ER
PT J
AU Bowman, MJ
Dien, BS
Vermillion, KE
Mertens, JA
AF Bowman, Michael J.
Dien, Bruce S.
Vermillion, Karl E.
Mertens, Jeffrey A.
TI Isolation and characterization of unhydrolyzed oligosaccharides from
switchgrass (Panicum virgatum, L.) xylan after exhaustive enzymatic
treatment with commercial enzyme preparations
SO CARBOHYDRATE RESEARCH
LA English
DT Article
DE LC-MSn; Switchgrass; Xylan; Xylooligosaccharide;
alpha-Arabinofuranosidase
ID TRICHODERMA-REESEI; STRUCTURAL-CHARACTERIZATION; ENDO-XYLANASE;
CELL-WALLS; HYDROLYSIS; ARABINOFURANOSIDASE; CONVERSION; ETHANOL;
HEMICELLULOSE; BIOCONVERSION
AB Switchgrass (Panicum virgatum, L.) is a potential renewable source of carbohydrates for use in microbial conversion to biofuels. Xylan comprises approximately 30% of the switchgrass cell wall. To understand the limitations of commercial enzyme mixtures, alkali-extracted, isolated switchgrass xylan was hydrolyzed by the action of two commercial enzyme cocktails, in the presence and absence of an additional alpha-arabinofuranosidase enzyme. The two most abundant enzymatic digestion products from each commercial enzyme treatment were separated and characterized by LC-MSn, linkage analysis, and NMR. The most abundant oligosaccharide from each commercial cocktail was susceptible to hydrolysis when supplemented with a GH62 alpha-arabinofuranosidase enzyme; further characterization confirmed the presence of (1 -> 3)-alpha-arabinose linkages. These results demonstrate the lack of the required selectivity for arabinose-containing substrates in the commercial enzyme preparations tested. One product from each condition remained intact and was found to contain (1 -> 2)-beta-xylose-(1 -> 3)-alpha-arabinose side chains; this linkage acts as a source of oligosaccharide recalcitrance. Published by Elsevier Ltd.
C1 [Bowman, Michael J.; Dien, Bruce S.; Mertens, Jeffrey A.] USDA ARS, Natl Ctr Agr Utilizat Res, Bioenergy Res Unit, Peoria, IL 61604 USA.
[Vermillion, Karl E.] USDA ARS, Natl Ctr Agr Utilizat Res, Funct Foods Res Unit, Peoria, IL 61604 USA.
RP Bowman, MJ (reprint author), USDA ARS, Natl Ctr Agr Utilizat Res, Bioenergy Res Unit, 1815 N Univ St, Peoria, IL 61604 USA.
EM michael.bowman@ars.usda.gov
OI Dien, Bruce/0000-0003-3863-6664
NR 35
TC 4
Z9 4
U1 3
U2 20
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0008-6215
EI 1873-426X
J9 CARBOHYD RES
JI Carbohydr. Res.
PD APR 30
PY 2015
VL 407
BP 42
EP 50
DI 10.1016/j.carres.2015.01.018
PG 9
WC Biochemistry & Molecular Biology; Chemistry, Applied; Chemistry, Organic
SC Biochemistry & Molecular Biology; Chemistry
GA CF0FH
UT WOS:000352217900007
PM 25704197
ER
PT J
AU Nunez, A
Lehotay, SJ
Geis-Asteggiante, L
AF Nunez, Alberto
Lehotay, Steven J.
Geis-Asteggiante, Lucia
TI Structural characterization of product ions by electrospray ionization
and quadrupole time-of-flight mass spectrometry to support regulatory
analysis of veterinary drug residues in foods. Part 2: Benzimidazoles,
nitromidazoles, phenothiazines, and mectins
SO RAPID COMMUNICATIONS IN MASS SPECTROMETRY
LA English
DT Article
ID PERFORMANCE LIQUID-CHROMATOGRAPHY; MS; IDENTIFICATION; DISSOCIATION;
AVERMECTINS; VALIDATION; SAMPLES; MEAT
AB RATIONALE: Analysis for identification and quantification of regulated veterinary drug residues in foods is usually achieved by liquid chromatography coupled to tandem mass spectrometry (LC/MS/MS). The instrumental method requires the selection of characteristic ions, but structural elucidation is seldom performed to help ensure accuracy. This study is a continuation of previous work to characterize selected product ions in support of regulatory monitoring programs.
METHODS: The tandem mass spectra of 28 veterinary drugs from a previously published LC/MS/MS method were acquired with a high-resolution quadrupole time-of-flight (Q-TOF) mass spectrometer using electrospray ionization (ESI) in positive mode. The TOF analyzer was calibrated to achieve a mass accuracy error <5ppm for the MS and MS/MS modes, and samples were infused for data acquisition.
RESULTS: The high mass accuracy achieved in Q-TOF allowed elucidation of the formulae of the product ions previously selected for qualitative identification. Rational interpretation of results was made and compared with the published literature, and the structure for the MS/MS product ions of four classes of regulated drugs (mectins, benzimidazoles, nitroimidazoles, and phenothiazines), totaling 28 compounds, were examined leading to the report of new structures or confirmation of published structures using low-resolution MS.
CONCLUSIONS: Structural characterization of the product ions selected for identification and quantification of veterinary drug residues is important information for regulatory monitoring programs in defense of regulatory enforcement actions. This study has allowed structural elucidation of 84 MS/MS product ions previously selected for the LC/MS/MS analysis of 28 drug analytes. Published in 2015. This article is a U.S. Government work and is in the public domain in the USA.
C1 [Nunez, Alberto; Lehotay, Steven J.; Geis-Asteggiante, Lucia] ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
[Geis-Asteggiante, Lucia] UdelaR, Fac Quim, Catedra Farmacognosia & Prod Nat, DQO, Montevideo 12800, Uruguay.
RP Nunez, A (reprint author), ARS, USDA, Eastern Reg Res Ctr, 600 East Mermaid Lane, Wyndmoor, PA 19038 USA.
EM alberto.nunez@ars.usda.gov
FU US-Israel Binational Agricultural Research and Development Fund
[US-4273-09]
FX The authors would like to thank Alan Lightfield for his work with the
Q-Trap instrument and Leo Sapozhnikov for his voluntary work in this
research. This work was conducted under Interagency Agreement No.
#60-1935-9-031 between the Agricultural Research Service and the Food
Safety and Inspection Service. This work was also supported by the
US-Israel Binational Agricultural Research and Development Fund Grant
US-4273-09. Mention of a brand or firm name does not constitute an
endorsement by the U.S. Department of Agriculture above others of a
similar nature not mentioned.
NR 23
TC 3
Z9 3
U1 2
U2 21
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0951-4198
EI 1097-0231
J9 RAPID COMMUN MASS SP
JI Rapid Commun. Mass Spectrom.
PD APR 30
PY 2015
VL 29
IS 8
BP 719
EP 729
DI 10.1002/rcm.7153
PG 11
WC Biochemical Research Methods; Chemistry, Analytical; Spectroscopy
SC Biochemistry & Molecular Biology; Chemistry; Spectroscopy
GA CF4ZK
UT WOS:000352563200003
PM 26406486
ER
PT J
AU Prasifka, JR
Spring, O
Conrad, J
Cook, LW
Palmquist, DE
Foley, ME
AF Prasifka, Jarrad R.
Spring, Otrnar
Conrad, Juergen
Cook, Leonard W.
Palmquist, Debra E.
Foley, Michael E.
TI Sesquiterpene Lactone Composition of Wild and Cultivated Sunflowers and
Biological Activity against an Insect Pest
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE Helianthus annuus; Asteraceae; terpenoids; host plant resistance;
Pyralidae; argophyllone B; argophyllin; argophyllone B tiglate
ID HELIANTHUS-ANNUUS; HOMOEOSOMA-ELECTELLUM; MOTH LEPIDOPTERA; MAXIMILIANI;
PYRALIDAE; HELIANGOLIDES; ARGOPHYLLUS; METABOLISM; RESISTANCE; HERBIVORE
AB Sesquiterpene lactones in sunflowers, Helianthus spp., are important to interactions with pathogens, weeds, and insets. Across a broad range of Helianthus annuus, differences in composition of sesquiterpene lactones extracted from disc florets were found between wild and cultivated sunflowers and also between distinct groups of inbreds used to produce sunflower hybrids. Discriminant function analysis showed the presence and relative abundance of argophyllone B, niveusin B, and 15-hydroxy-3-dehydrodesoxyfruticin were usually (75%) effective at classifying wild sunflowers, cultivated inbreds, and hybrids. Argophyllone B reduced the larval mass of the sunflower moth, Homeosoma electellum, by >30%, but only at a dose greater than that found in florets. Low doses of mixed extracts from cultivated florets produced a similar (approximate to 40%) reduction in larval mass, suggesting combinations of sesquiterpene lactones act additively. Although the results support a role for sesquiterpene lactones in herbivore defense of cultivated sunflowers, additional information is needed to use these compounds purposefully in breeding.
C1 [Prasifka, Jarrad R.; Cook, Leonard W.; Foley, Michael E.] Agr Res Serv, USDA, No Crop Sci Lab, Fargo, ND 58102 USA.
[Spring, Otrnar] Univ Hohenheim, Inst Bot, D-70593 Stuttgart, Germany.
[Conrad, Juergen] Univ Hohenheim, Inst Organ Chem, D-70593 Stuttgart, Germany.
[Palmquist, Debra E.] Agr Res Serv, USDA, Peoria, IL 61604 USA.
RP Prasifka, JR (reprint author), Agr Res Serv, USDA, No Crop Sci Lab, Fargo, ND 58102 USA.
EM jarrad.prasifka@usda.ars.gov
NR 32
TC 7
Z9 8
U1 0
U2 15
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
EI 1520-5118
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD APR 29
PY 2015
VL 63
IS 16
BP 4042
EP 4049
DI 10.1021/acs.jafc.5b00362
PG 8
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA CH3LB
UT WOS:000353931100004
PM 25853587
ER
PT J
AU Grewal, N
Faubion, J
Feng, GH
Kaufman, RC
Wilson, JD
Shi, YC
AF Grewal, Navneet
Faubion, Jon
Feng, Guohua
Kaufman, Rhett C.
Wilson, Jeff D.
Shi, Yong-Cheng
TI Structure of Waxy Maize Starch Hydrolyzed by Maltogenic alpha-Amylase in
Relation to Its Retrogradation
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE maltogenic amylase; degree of hydrolysis; molecular size distribution;
chain length distribution; retrogradation
ID WX-CONTAINING GENOTYPES; PARTIAL BETA-AMYLOLYSIS; CHAIN-LENGTH;
FINE-STRUCTURE; WHEAT-STARCH; BREAD; AMYLOPECTIN; GELATINIZATION;
ENZYMES; MALTODEXTRINS
AB Maltogenic alpha-amylase is widely used as an antistaling agent in bakery foods. The objective of this study was to determine the degree of hydrolysis (DH) and starch structure after maltogenic amylase treatments in relation to its retrogradation. Waxy maize starch was cooked and hydrolyzed to different degrees by a maltogenic amylase. High-performance anion-exchange chromatography and size exclusion chromatography were used to determine saccharides formed and the molecular weight (M-w) distributions of the residual starch structure, respectively. Chain length (CL) distributions of debranched starch samples were further related to amylopectin (AP) retrogradation. Differential scanning calorimetry (DSC) results showed the complete inhibition of retrogradation when starches were hydrolyzed to >20% DH. M-w and CL distributions of residual AP structure indicated that with an increase in %DH, a higher proportion of unit chains with degree of polymerization (DP) <= 9 and a lower proportion of unit chains with DP >= 17 were formed. A higher proportion of short outer AP chains that cannot participate in the formation of double helices supports the decrease in and eventual inhibition of retrogradation observed with the increase in %DH. These results suggest that the maltogenic amylase could play a powerful role in inhibiting the staling of baked products even at limited starch hydrolysis.
C1 [Grewal, Navneet; Faubion, Jon; Shi, Yong-Cheng] Kansas State Univ, Dept Grain Sci & Ind, Manhattan, KS 66506 USA.
[Feng, Guohua] Corbion, Lenexa, KS 66215 USA.
[Kaufman, Rhett C.; Wilson, Jeff D.] USDA ARS, Ctr Grain & Anim Hlth Res, Manhattan, KS 66502 USA.
RP Shi, YC (reprint author), Kansas State Univ, Dept Grain Sci & Ind, Shellenberger Hall, Manhattan, KS 66506 USA.
EM ycshi@ksu.edu
FU Caravan Ingredients (Lenexa, KS, USA) via a grant from the Kansas
Bioscience Authority
FX We thank Caravan Ingredients (Lenexa, KS, USA) for supporting the
project via a grant from the Kansas Bioscience Authority.
NR 36
TC 2
Z9 3
U1 11
U2 51
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
EI 1520-5118
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD APR 29
PY 2015
VL 63
IS 16
BP 4196
EP 4201
DI 10.1021/jf506215s
PG 6
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA CH3LB
UT WOS:000353931100021
PM 25843595
ER
PT J
AU Ruiz-Hernandez, A
Kuo, CC
Rentero-Garrido, P
Tang, WY
Redon, J
Ordovas, JM
Navas-Acien, A
Tellez-Plaza, M
AF Ruiz-Hernandez, Adrian
Kuo, Chin-Chi
Rentero-Garrido, Pilar
Tang, Wan-Yee
Redon, Josep
Ordovas, Jose M.
Navas-Acien, Ana
Tellez-Plaza, Maria
TI Environmental chemicals and DNA methylation in adults: a systematic
review of the epidemiologic evidence
SO CLINICAL EPIGENETICS
LA English
DT Review
DE Systematic review; DNA methylation; Environmental chemicals; Cadmium;
Lead; Mercury; Metals; Persistent organic pollutants; Bisphenol A;
Polycyclic aromatic hydrocarbons
ID POLYCYCLIC AROMATIC-HYDROCARBONS; PERSISTENT ORGANIC POLLUTANTS;
PERIPHERAL ARTERIAL-DISEASE; EPIGENOME-WIDE ASSOCIATION; SINGLE-BASE
RESOLUTION; CADMIUM EXPOSURE; LEAD-EXPOSURE; GENE-EXPRESSION;
BISPHENOL-A; CORD BLOOD
AB Current evidence supports the notion that environmental exposures are associated with DNA-methylation and expression changes that can impact human health. Our objective was to conduct a systematic review of epidemiologic studies evaluating the association between environmental chemicals with DNA methylation levels in adults. After excluding arsenic, recently evaluated in a systematic review, we identified a total of 17 articles (6 on cadmium, 4 on lead, 2 on mercury, 1 on nickel, 1 on antimony, 1 on tungsten, 5 on persistent organic pollutants and perfluorinated compounds, 1 on bisphenol A, and 3 on polycyclic aromatic hydrocarbons). The selected articles reported quantitative methods to determine DNA methylation including immunocolorimetric assays for total content of genomic DNA methylation, and microarray technologies, methylation-specific quantitative PCR, Luminometric Methylation Assay (LUMA), and bisulfite pyrosequencing for DNA methylation content of genomic sites such as gene promoters, LINE-1, Alu elements, and others. Considering consistency, temporality, strength, dose-response relationship, and biological plausibility, we concluded that the current evidence is not sufficient to provide inference because differences across studies and limited samples sizes make it difficult to compare across studies and to evaluate sources of heterogeneity. Important questions for future research include the need for larger and longitudinal studies, the validation of findings, and the systematic evaluation of the dose-response relationships. Future studies should also consider the evaluation of epigenetic marks recently in the research spotlight such as DNA hydroxymethylation and the role of underlying genetic variants.
C1 [Ruiz-Hernandez, Adrian; Redon, Josep] Hosp Clin Valencia, Dept Internal Med, Valencia 46010, Spain.
[Ruiz-Hernandez, Adrian; Redon, Josep; Tellez-Plaza, Maria] Hosp Clin Valencia INCLIVA, Inst Biomed Res, Area Cardiometabol & Renal Risk, Valencia 46010, Spain.
[Kuo, Chin-Chi; Tang, Wan-Yee; Navas-Acien, Ana; Tellez-Plaza, Maria] Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Environm Hlth Sci, Baltimore, MD 21205 USA.
[Kuo, Chin-Chi; Navas-Acien, Ana] Johns Hopkins Bloomberg Sch Publ Hlth, Dept Epidemiol, Baltimore, MD 21205 USA.
[Kuo, Chin-Chi] China Med Univ Hosp, Dept Internal Med, Kidney Inst, Taichung 40447, Taiwan.
[Kuo, Chin-Chi] China Med Univ Hosp, Div Nephrol, Taichung 40447, Taiwan.
[Kuo, Chin-Chi] China Med Univ, Coll Med, Taichung 40447, Taiwan.
[Rentero-Garrido, Pilar] Inst Biomed Res INCLIVA, Genotyping & Genet Diag Unit, Valencia 46010, Spain.
[Redon, Josep] CIBER Physiopathol Obes & Nutr CIBEROBN, Inst Hlth Carlos 3, Minist Hlth, Madrid, Spain.
[Ordovas, Jose M.] Tufts Univ, Jean Mayer US Dept Agr, Human Nutr Res Ctr Aging, Nutr & Genom Lab, Boston, MA 02111 USA.
[Ordovas, Jose M.] Inst Madrileno Estudios Avanzados Alimentac, Madrid 28049, Spain.
[Navas-Acien, Ana] Johns Hopkins Med Inst, Welch Ctr Prevent Epidemiol & Clin Res, Baltimore, MD 21205 USA.
RP Tellez-Plaza, M (reprint author), Hosp Clin Valencia INCLIVA, Inst Biomed Res, Area Cardiometabol & Renal Risk, Av Menendez Pelayo 4, Valencia 46010, Spain.
EM maria.tellez@uv.es
OI Tellez-Plaza, Maria/0000-0002-3850-1228
FU Strategic Action for Research in Health sciences [CP12/03080]; European
Funds for Regional Development (FEDER); National Institute of
Environmental Health Sciences [R01ES021367, R01ES025216]
FX Maria Tellez-Plaza was supported by the Strategic Action for Research in
Health sciences (CP12/03080), which is an initiative from Carlos III
Health Institute Madrid and the Spanish Ministry of Economy and
Competitiveness and co-funded with European Funds for Regional
Development (FEDER). Ana Navas-Acien was supported by grants R01ES021367
and R01ES025216 from the National Institute of Environmental Health
Sciences.
NR 136
TC 18
Z9 18
U1 11
U2 39
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1868-7083
J9 CLIN EPIGENETICS
JI Clin. Epigenetics
PD APR 29
PY 2015
VL 7
AR 55
DI 10.1186/s13148-015-0055-7
PG 24
WC Oncology
SC Oncology
GA CI0OD
UT WOS:000354435700001
PM 25984247
ER
PT J
AU Bachmann, GE
Segura, DF
Devescovi, F
Juarez, ML
Ruiz, MJ
Vera, MT
Cladera, JL
Teal, PEA
Fernandez, PC
AF Bachmann, Guillermo E.
Segura, Diego F.
Devescovi, Francisco
Laura Juarez, M.
Josefina Ruiz, M.
Teresa Vera, M.
Cladera, Jorge L.
Teal, Peter E. A.
Fernandez, Patricia C.
TI Male Sexual Behavior and Pheromone Emission Is Enhanced by Exposure to
Guava Fruit Volatiles in Anastrepha fraterculus
SO PLOS ONE
LA English
DT Article
ID STERILE INSECT TECHNIQUE; GINGER ROOT OIL; CERATITIS-CAPITATA DIPTERA;
JUVENILE-HORMONE TREATMENT; MATING SUCCESS; COURTSHIP BEHAVIOR;
LABORATORY STRAIN; ALPHA-COPAENE; FLIES DIPTERA; FLY DIPTERA
AB Background
Plant chemicals can affect reproductive strategies of tephritid fruit flies by influencing sex pheromone communication and increasing male mating competitiveness.
Objective and Methodology
We explored whether exposure of Anastrepha fraterculus males to guava fruit volatiles and to a synthetic blend of volatile compounds released by this fruit affects the sexual performance of wild and laboratory flies. By means of bioassays and pheromone collection we investigated the mechanism underlying this phenomenon.
Results
Guava volatile exposure enhanced male mating success and positively affected male calling behavior and pheromone release in laboratory and wild males. Changes in male behavior appear to be particularly important during the initial phase of the sexual activity period, when most of the mating pairs are formed. Exposure of laboratory males to a subset of guava fruit volatiles enhanced mating success, showing that the response to the fruit might be mimicked artificially.
Conclusions
Volatiles of guava seem to influence male mating success through an enhancement of chemical and physical signals related to the communication between sexes. This finding has important implications for the management of this pest species through the Sterile Insect Technique. We discuss the possibility of using artificial blends to improve the sexual competitiveness of sterile males.
C1 [Bachmann, Guillermo E.; Segura, Diego F.; Devescovi, Francisco; Cladera, Jorge L.] INTA, Inst Genet EA Favret, Hurlingham, Argentina.
[Bachmann, Guillermo E.; Segura, Diego F.; Devescovi, Francisco; Laura Juarez, M.; Josefina Ruiz, M.; Teresa Vera, M.; Fernandez, Patricia C.] Consejo Nacl Invest Cient & Tecn, RA-1033 Buenos Aires, DF, Argentina.
[Laura Juarez, M.; Teresa Vera, M.] Univ Nacl Tucuman, FAZ, RA-4000 San Miguel De Tucuman, Tucuman, Argentina.
[Josefina Ruiz, M.] EEAOC, San Miguel De Tucuman, Tucuman, Argentina.
[Teal, Peter E. A.] USDA ARS, CMAVE, Gainesville, FL USA.
[Fernandez, Patricia C.] INTA, Estn Expt Agr Delta Parana, Campana, Argentina.
RP Fernandez, PC (reprint author), Consejo Nacl Invest Cient & Tecn, RA-1033 Buenos Aires, DF, Argentina.
EM pcfernan@agro.uba.ar
FU Agencia Nacional de Promocion Cientifica y Tecnologica [BID-PICT 1324];
Consejo Nacional de Investigaciones Cientificas y Tecnologicas [PIP
100144]; International Atomic Energy Agency [RC-16483]
FX This work was funded by means of Prestamo BID-PICT 1324 from Agencia
Nacional de Promocion Cientifica y Tecnologica
(http://www.agencia.mincyt.gob.ar/) to DFS, PCF and MTV; PIP 100144 from
Consejo Nacional de Investigaciones Cientificas y Tecnologicas
(http://www.conicet.gov.ar/) to DFS, MTV and PCF; and RC-16483 from
International Atomic Energy Agency (http://www.iaea.org/) to DFS. The
funders had no role in study design, data collection and analysis,
decision to publish, or preparation of the manuscript.
NR 58
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PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 29
PY 2015
VL 10
IS 4
AR e0124250
DI 10.1371/journal.pone.0124250
PG 17
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CH0LO
UT WOS:000353711600075
PM 25923584
ER
PT J
AU Castaneda-Alvarez, NP
de Haan, S
Juarez, H
Khoury, CK
Achicanoy, HA
Sosa, CC
Bernau, V
Salas, A
Heider, B
Simon, R
Maxted, N
Spooner, DM
AF Castaneda-Alvarez, Nora P.
de Haan, Stef
Juarez, Henry
Khoury, Colin K.
Achicanoy, Harold A.
Sosa, Chrystian C.
Bernau, Vivian
Salas, Alberto
Heider, Bettina
Simon, Reinhard
Maxted, Nigel
Spooner, David M.
TI Ex Situ Conservation Priorities for the Wild Relatives of Potato
(Solanum L. Section Petota)
SO PLOS ONE
LA English
DT Article
ID GLOBODERA-PALLIDA STONE; LATE BLIGHT RESISTANCE; TUBER-BEARING SOLANUM;
SOMATIC HYBRIDS; CULTIVATED POTATO; PHYTOPHTHORA-INFESTANS;
RALSTONIA-SOLANACEARUM; SPECIES DISTRIBUTIONS; ORTHOLOG SEQUENCES;
GENETIC-RESOURCES
AB Crop wild relatives have a long history of use in potato breeding, particularly for pest and disease resistance, and are expected to be increasingly used in the search for tolerance to biotic and abiotic stresses. Their current and future use in crop improvement depends on their availability in ex situ germplasm collections. As these plants are impacted in the wild by habitat destruction and climate change, actions to ensure their conservation ex situ become ever more urgent. We analyzed the state of ex situ conservation of 73 of the closest wild relatives of potato (Solanum section Petota) with the aim of establishing priorities for further collecting to fill important gaps in germplasm collections. A total of 32 species (43.8%), were assigned high priority for further collecting due to severe gaps in their ex situ collections. Such gaps are most pronounced in the geographic center of diversity of the wild relatives in Peru. A total of 20 and 18 species were assessed as medium and low priority for further collecting, respectively, with only three species determined to be sufficiently represented currently. Priorities for further collecting include: (i) species completely lacking representation in germplasm collections; (ii) other high priority taxa, with geographic emphasis on the center of species diversity; (iii) medium priority species. Such collecting efforts combined with further emphasis on improving ex situ conservation technologies and methods, performing genotypic and phenotypic characterization of wild relative diversity, monitoring wild populations in situ, and making conserved wild relatives and their associated data accessible to the global research community, represent key steps in ensuring the long-term availability of the wild genetic resources of this important crop.
C1 [Castaneda-Alvarez, Nora P.; Khoury, Colin K.; Achicanoy, Harold A.; Sosa, Chrystian C.; Bernau, Vivian] CIAT, Decis & Policy Anal Program, Cali, Colombia.
[Castaneda-Alvarez, Nora P.; Maxted, Nigel] Univ Birmingham, Sch Biosci, Birmingham, W Midlands, England.
[de Haan, Stef; Juarez, Henry; Salas, Alberto; Heider, Bettina] CIP, Global Program Genet Resources, Lima, Peru.
[Khoury, Colin K.] Wageningen Univ, Ctr Crop Syst Anal, NL-6700 AP Wageningen, Netherlands.
[Simon, Reinhard] CIP, Integrated IT & Computat Res Unit, Lima, Peru.
[Spooner, David M.] Univ Wisconsin, USDA ARS, Dept Hort, Vegetable Crop Res Unit, Madison, WI 53706 USA.
RP Castaneda-Alvarez, NP (reprint author), CIAT, Decis & Policy Anal Program, Cali, Colombia.
EM n.p.castaneda@cgiar.org
RI Castaneda-Alvarez, Nora/I-8026-2015; Sosa, Chrystian Camilo/I-6787-2016;
OI Castaneda-Alvarez, Nora/0000-0003-1827-4782; Sosa, Chrystian
Camilo/0000-0002-3734-3248; Khoury, Colin K./0000-0001-7893-5744;
Juarez, Henry/0000-0002-8535-7089
FU Government of Norway; aforementioned initiative; CGIAR Research Program
on Roots, Tubers and Bananas; CGIAR Research Program on Climate Change,
Agriculture, and Food Security in Cali, Colombia
FX This work was undertaken as part of the initiative "Adapting Agriculture
to Climate Change: Conserving, Protecting and Preparing Crop Wild
Relatives," which is supported by the Government of Norway. The project
is managed by the Global Crop Diversity Trust with the Millennium Seed
Bank of the Royal Botanic Gardens, Kew UK and implemented in partnership
with national and international genebanks and plant breeding institutes
around the world. For further information, go to the project website:
http://www.cwrdiversity.org/. Funding was provided by the aforementioned
initiative; the CGIAR Research Program on Roots, Tubers and Bananas; and
the CGIAR Research Program on Climate Change, Agriculture, and Food
Security in Cali, Colombia. The funders had no role in study design,
data collection and analysis, decision to publish, or preparation of the
manuscript.
NR 99
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U1 0
U2 29
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 29
PY 2015
VL 10
IS 4
AR e0122599
DI 10.1371/journal.pone.0122599
PG 19
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CH0LO
UT WOS:000353711600018
PM 25923711
ER
PT J
AU Duitama, J
Silva, A
Sanabria, Y
Cruz, DF
Quintero, C
Ballen, C
Lorieux, M
Scheffler, B
Farmer, A
Torres, E
Oard, J
Tohme, J
AF Duitama, Jorge
Silva, Alexander
Sanabria, Yamid
Felipe Cruz, Daniel
Quintero, Constanza
Ballen, Carolina
Lorieux, Mathias
Scheffler, Brian
Farmer, Andrew
Torres, Edgar
Oard, James
Tohme, Joe
TI Whole Genome Sequencing of Elite Rice Cultivars as a Comprehensive
Information Resource for Marker Assisted Selection
SO PLOS ONE
LA English
DT Article
ID ORYZA-SATIVA; NUCLEOTIDE POLYMORPHISM; ECTOPIC RECOMBINATION;
DOMESTICATED RICE; VARIATION REVEALS; WIDE ASSOCIATION; AMYLOSE CONTENT;
COPY NUMBER; IDENTIFICATION; EVOLUTIONARY
AB Current advances in sequencing technologies and bioinformatics revealed the genomic background of rice, a staple food for the poor people, and provided the basis to develop large genomic variation databases for thousands of cultivars. Proper analysis of this massive resource is expected to give novel insights into the structure, function, and evolution of the rice genome, and to aid the development of rice varieties through marker assisted selection or genomic selection. In this work we present sequencing and bioinformatics analyses of 104 rice varieties belonging to the major subspecies of Oryza sativa. We identified repetitive elements and recurrent copy number variation covering about 200 Mbp of the rice genome. Genotyping of over 18 million polymorphic locations within O. sativa allowed us to reconstruct the individual haplotype patterns shaping the genomic background of elite varieties used by farmers throughout the Americas. Based on a reconstruction of the alleles for the gene GBSSI, we could identify novel genetic markers for selection of varieties with high amylose content. We expect that both the analysis methods and the genomic information described here would be of great use for the rice research community and for other groups carrying on similar sequencing efforts in other crops.
C1 [Duitama, Jorge; Silva, Alexander; Felipe Cruz, Daniel; Quintero, Constanza; Ballen, Carolina; Lorieux, Mathias; Torres, Edgar; Tohme, Joe] Ctr Int Agr Trop, Agrobiodivers Res Area, Cali, Colombia.
[Sanabria, Yamid; Oard, James] Louisiana State Univ, Ctr Agr, Rice Res Stn, Rayne, LA USA.
[Scheffler, Brian] ARS, Genom & Bioinformat Res Unit, USDA, Jamie Whitten Delta States Res Ctr, Stoneville, MS USA.
[Farmer, Andrew] Natl Ctr Genome Resources, Santa Fe, NM USA.
[Lorieux, Mathias] Inst Rech Dev, Plant Divers Adaptat & Dev Res Unit, Montpellier, France.
RP Duitama, J (reprint author), Ctr Int Agr Trop, Agrobiodivers Res Area, Apartado Aereo 6713, Cali, Colombia.
EM j.duitama@cgiar.org
OI Duitama, Jorge/0000-0002-9105-6266; Scheffler, Brian/0000-0003-1968-8952
FU Agricultural Research Service of the United States Department of
Agriculture (USDA/ARS); RiceCAP project (USDA/CSREES)
[2004-35317-14867]; Mississippi Rice Promotion Board; Rice Foundation;
Louisiana Rice Research Board; International Center for Tropical
Agriculture; Global Rice Science Partnership (GRiSP) project; National
Science Foundation (NSF) [0965420]
FX This work was supported by the Agricultural Research Service of the
United States Department of Agriculture (USDA/ARS); the RiceCAP project
(USDA/CSREES http://www.uark.edu/ua/ricecap/) (2004-35317-14867 to J.O.
and B.S.); The Mississippi Rice Promotion Board
(http://rice.msstate.edu/members.html); The Rice Foundation
(http://www.usarice.com/index.php); the Louisiana Rice Research Board
(http://www.lsuagcenter.com/en/crops_livestock/crops/rice/Rice+Research+
Board+Reports/From-the-Louisiana-Rice-Research-Board.htm); the
International Center for Tropical Agriculture (http://ciat.cgiar.org/);
the Global Rice Science Partnership (GRiSP) project
(http://www.grisp.net/main/summary); and the National Science Foundation
(NSF) (0965420 to J.T.). The funders had no role in study design, data
collection and analysis, decision to publish, or preparation of the
manuscript.
NR 47
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PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 29
PY 2015
VL 10
IS 4
AR e0124617
DI 10.1371/journal.pone.0124617
PG 20
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CH0LO
UT WOS:000353711600097
PM 25923345
ER
PT J
AU Chen, J
Chakravarty, P
Davidson, GR
Wren, DG
Locke, MA
Zhou, Y
Brown, G
Cizdziel, JV
AF Chen, Jingjing
Chakravarty, Pragya
Davidson, Gregg R.
Wren, Daniel G.
Locke, Martin A.
Zhou, Ying
Brown, Garry, Jr.
Cizdziel, James V.
TI Simultaneous determination of mercury and organic carbon in sediment and
soils using a direct mercury analyzer based on thermal
decomposition-atomic absorption spectrophotometry
SO ANALYTICA CHIMICA ACTA
LA English
DT Article
DE Mercury; Sediment; Total organic carbon; Oxbow lake; Mississippi River;
Wetland
ID LOSS-ON-IGNITION; GOLD AMALGAMATION; FOREST SOILS; LAKE; SPECTROMETRY;
DEPOSITION; SAMPLES; NEVADA; MATTER; LEAD
AB The purpose of this work was to study the feasibility of using a direct mercury analyzer (DMA) to simultaneously determine mercury (Hg) and organic matter content in sediment and soils. Organic carbon was estimated by re-weighing the sample boats post analysis to obtain loss-on-ignition (LOI) data. The DMA-LOI results were statistically similar (p < 0.05) to the conventional muffle furnace approach. A regression equation was developed to convert DMA-LOI data to total organic carbon (TOC), which varied between 0.2% and 13.0%. Thus, mercury analyzers based on combustion can provide accurate estimates of organic carbon content in non-calcareous sediment and soils; however, weight gain from moisture (post-analysis), measurement uncertainty, and sample representativeness should all be taken into account. Sediment cores from seasonal wetland and open water areas from six oxbow lakes in the Mississippi River alluvial flood plain were analyzed. Wetland sediments generally had higher levels of Hg than open water areas owing to a greater fraction of fine particles and higher levels of organic matter. Annual loading of Hg in open water areas was estimated at 4.3, 13.4, 19.2, 20.7, 129, and 135 ng cm (2) yr (1) for Beasley, Roundaway, Hampton, Washington, Wolf and Sky Lakes, respectively. Generally, the interval with the highest Hg flux was dated to the 1960s and 1970s. (C) 2015 Elsevier B.V. All rights reserved.
C1 [Chen, Jingjing; Zhou, Ying] Zhejiang Univ Technol, Coll Chem Engn, Hangzhou 310032, Zhejiang, Peoples R China.
[Chakravarty, Pragya; Brown, Garry, Jr.; Cizdziel, James V.] Univ Mississippi, Dept Chem & Biochem, University, MS 38677 USA.
[Davidson, Gregg R.] Univ Mississippi, Dept Geol & Geol Engn, University, MS 38677 USA.
[Wren, Daniel G.; Locke, Martin A.] Agr Res Serv, Natl Sedimentat Lab, USDA, Oxford, MS 38655 USA.
RP Cizdziel, JV (reprint author), Univ Mississippi, Dept Chem & Biochem, University, MS 38677 USA.
EM yingzhou@zjut.edu.cn; cizdziel@olemiss.edu
FU United States Environmental Protection Agency [CD-95450510-0];
Mississippi Water Resources Research Institute
FX Partial funding was provided by the United States Environmental
Protection Agency (#CD-95450510-0) and the Mississippi Water Resources
Research Institute.
NR 29
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U1 5
U2 55
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0003-2670
EI 1873-4324
J9 ANAL CHIM ACTA
JI Anal. Chim. Acta
PD APR 29
PY 2015
VL 871
BP 9
EP 17
DI 10.1016/j.aca.2015.03.011
PG 9
WC Chemistry, Analytical
SC Chemistry
GA CF0AE
UT WOS:000352204100002
PM 25847156
ER
PT J
AU Frazier-Wood, AC
Kim, J
Davis, JS
Jung, SY
Chang, S
AF Frazier-Wood, Alexis C.
Kim, Jihye
Davis, Jennifer S.
Jung, Su Yon
Chang, Shine
TI In cross-sectional observations, dietary quality is not associated with
CVD risk in women; in men the positive association is accounted for by
BMI
SO BRITISH JOURNAL OF NUTRITION
LA English
DT Article
DE Diet quality; Healthy Eating Index; CVD risk factors; The National
Health and Nutrition Examination Survey; BMI
ID HEALTHY EATING INDEX; CORONARY-HEART-DISEASE; GUIDELINES-FOR-AMERICANS;
MAJOR CHRONIC DISEASE; NUTRITION EXAMINATION SURVEY; C-REACTIVE PROTEIN;
BODY-MASS INDEX; CARDIOVASCULAR-DISEASE; INSULIN-RESISTANCE;
BLOOD-PRESSURE
AB The role that BMI plays in the association between dietary quality and CVD risk is not known. We aimed to better understand this relationship using statistical methods which correct for sex-specific underreporting of dietary intake. Overall, dietary quality was assessed using the Healthy Eating Index (HEI) on data from 9797 non-pregnant adults (aged >20 years) who participated in the National Health and Nutrition Examination Survey from 2005 to 2010. CVD risk factors included blood pressure, fasting glucose and insulin, homeostatic models of insulin resistance (HOMA-IR), HDL- and LDL-cholesterol (HDL-C and LDL-C), TAG and C-reactive protein (CRP). We controlled for demographic and lifestyle covariates, and we used the population ratio approach (which adjusts for the underreporting of intake) to compare mean HEI scores between the top and bottom quartiles of covariate-adjusted CVD risk factors. In women, the total HEI score was not associated with any CVD risk factors (all Q > 0.11). In men, the total HEI score was associated with covariate-adjusted residuals for fasting insulin (Q < 0.001), HOMA-IR (Q < 0.001), HDL-C (Q = 0.01), TAG (Q = 0.03) and CRP (Q < 0.001). When we additionally adjusted for BMI, the association with total HEI score was not significant (all P > 0.10). In the present analyses, dietary quality was associated with five CVD risk factors in a sex-specific manner. Moreover, the association of BMI with CVD risk attenuated the relationship between CVD risk and diet, which suggests that BMI is an important factor in heart disease prevention.
C1 [Frazier-Wood, Alexis C.] USDA ARS, Baylor Coll Med, Childrens Nutr Res Ctr, Houston, TX 77030 USA.
[Kim, Jihye; Davis, Jennifer S.; Jung, Su Yon; Chang, Shine] Univ Texas MD Anderson Canc Ctr, Dept Epidemiol, Div Canc Prevent & Populat Sci, Houston, TX 77030 USA.
RP Frazier-Wood, AC (reprint author), USDA ARS, Baylor Coll Med, Childrens Nutr Res Ctr, 1100 Bates St, Houston, TX 77030 USA.
EM lekki.wood@gmail.com
OI Davis, Jennifer/0000-0001-9456-1682
FU American Heart Association [14BGIA18740011]; USDA/ARS Children's
Nutrition Research Center at Baylor College of Medicine; federal funds
from the USDA/ARS [309-5-001-058]
FX A. C. F.-W. is funded by the American Heart Association (grant no:
14BGIA18740011) and the USDA/ARS Children's Nutrition Research Center at
Baylor College of Medicine. This work is a publication of the USDA/ARS
Children's Nutrition Research Center, Department of Pediatrics, Baylor
College of Medicine, Houston, TX, and it is funded in part with federal
funds from the USDA/ARS under Cooperative Agreement No. 309-5-001-058.
The contents of this publication do not necessarily reflect the views or
policies of the USDA, nor do the mention of trade names, commercial
products or organisations imply endorsement from the US government. We
thank Hwa Young for her assistance with data management and with
statistical programming.
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PU CAMBRIDGE UNIV PRESS
PI CAMBRIDGE
PA EDINBURGH BLDG, SHAFTESBURY RD, CB2 8RU CAMBRIDGE, ENGLAND
SN 0007-1145
EI 1475-2662
J9 BRIT J NUTR
JI Br. J. Nutr.
PD APR 28
PY 2015
VL 113
IS 8
BP 1244
EP 1253
DI 10.1017/S0007114515000185
PG 10
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA CH5DR
UT WOS:000354055400008
PM 25812570
ER
PT J
AU Chadwick, JG
Nislow, KH
McCormick, SD
AF Chadwick, Joseph G., Jr.
Nislow, Keith H.
McCormick, Stephen D.
TI Thermal onset of cellular and endocrine stress responses correspond to
ecological limits in brook trout, an iconic cold-water fish
SO CONSERVATION PHYSIOLOGY
LA English
DT Article
DE Climate change; cortisol; glucose; heat shock protein; Salvelinus
fontinalis; temperature
ID HEAT-SHOCK PROTEINS; SALMON SALMO-SALAR; RAINBOW-TROUT; ATLANTIC SALMON;
SALVELINUS-FONTINALIS; ONCORHYNCHUS-MYKISS; CLIMATE-CHANGE; BEHAVIORAL
THERMOREGULATION; TEMPERATURE INCREASES; PHYSIOLOGICAL STRESS
AB Climate change is predicted to change the distribution and abundance of species, yet underlying physiological mechanisms are complex and methods for detecting populations at risk from rising temperature are poorly developed. There is increasing interest in using physiological mediators of the stress response as indicators of individual and population-level response to environmental stressors. Here, we use laboratory experiments to show that the temperature thresholds in brook trout (Salvelinus fontinalis) for increased gill heat shock protein-70 (20.7 degrees C) and plasma glucose (21.2 degrees C) are similar to their proposed thermal ecological limit of 21.0 degrees C. Field assays demonstrated increased plasma glucose, cortisol and heat shock protein-70 concentrations at field sites where mean daily temperature exceeded 21.0 degrees C. Furthermore, population densities of brook trout were lowest at field sites where temperatures were warm enough to induce a stress response, and a co-occurring species with a higher thermal tolerance showed no evidence of physiological stress at a warm site. The congruence of stress responses and proposed thermal limits supports the use of these thresholds in models of changes in trout distribution under climate change scenarios and suggests that the induction of the stress response by elevated temperature may play a key role in driving the distribution of species.
C1 [Chadwick, Joseph G., Jr.; McCormick, Stephen D.] Univ Massachusetts, Grad Program Organism & Evolutionary Biol, Amherst, MA 01003 USA.
[Chadwick, Joseph G., Jr.; McCormick, Stephen D.] USGS, Conte Anadromous Fish Res Ctr, POB 796, Turners Falls, MA 01376 USA.
[Nislow, Keith H.] Univ Massachusetts, US Forest Serv, No Res Stn, Amherst, MA 01003 USA.
RP McCormick, SD (reprint author), USGS, Conte Anadromous Fish Res Ctr, POB 796, Turners Falls, MA 01376 USA.
EM mccormick@umext.umass.edu
FU National Science Foundation; Organismic & Evolutionary Biology Program
at the University of Massachusetts Amherst; USDA Forest Service Northern
Research Station; USDOI Northeast Climate Science Center
FX This research was supported by the National Science Foundation through a
Graduate Research Fellowship to Joseph G. Chadwick Jr. Additional
support came from the Organismic & Evolutionary Biology Program at the
University of Massachusetts Amherst through a student research grant. We
thank the USDA Forest Service Northern Research Station and the USDOI
Northeast Climate Science Center for support for K. Nislow.
NR 58
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U1 3
U2 6
PU OXFORD UNIV PRESS
PI OXFORD
PA GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
SN 2051-1434
J9 CONSERV PHYSIOL
JI Conserv. Physiol.
PD APR 28
PY 2015
VL 3
AR cov017
DI 10.1093/conphys/cov017
PG 12
WC Biodiversity Conservation; Ecology; Environmental Sciences; Physiology
SC Biodiversity & Conservation; Environmental Sciences & Ecology;
Physiology
GA DK8RW
UT WOS:000375197000002
PM 27293702
ER
PT J
AU Dassanayake, R
O'Rourke, K
Zhuang, DY
Truscott, T
Madsen-Bouterse, S
Schneider, D
AF Dassanayake, Rohana
O'Rourke, Katherine
Zhuang, Dongyue
Truscott, Thomas
Madsen-Bouterse, Sally
Schneider, David
TI A transfectant RK13 cell line permissive to caprine scrapie prion
SO PRION
LA English
DT Meeting Abstract
C1 [Dassanayake, Rohana; O'Rourke, Katherine; Madsen-Bouterse, Sally; Schneider, David] Washington State Univ, Pullman, WA 99164 USA.
[Zhuang, Dongyue; Truscott, Thomas; Schneider, David] USDA, Pullman, WA USA.
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U1 0
U2 0
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.02
BP S11
EP S12
PG 2
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900020
ER
PT J
AU Dinkel, K
Schneider, D
Boykin, D
Stephens, C
Madsen-Bouterse, S
Stanton, J
AF Dinkel, Kelcey
Schneider, David
Boykin, David
Stephens, Chad
Madsen-Bouterse, Sally
Stanton, James
TI Structural analysis of the anti-scrapie activity of DB772 in a
persistently-infected ovine microglia culture system
SO PRION
LA English
DT Meeting Abstract
C1 [Dinkel, Kelcey; Madsen-Bouterse, Sally; Stanton, James] Washington State Univ, Vet Microbiol & Pathol, Pullman, WA 99164 USA.
[Schneider, David] ARS, USDA, Anim Dis Res Unit, Pullman, WA USA.
[Stanton, James] Univ Georgia, Dept Pathol, Athens, GA 30602 USA.
[Boykin, David] Georgia State Univ, Dept Chem, Atlanta, GA 30303 USA.
[Stephens, Chad] Georgia Regents Univ, Dept Chem & Phys, Augusta, GA USA.
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U1 0
U2 0
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.21
BP S22
EP S22
PG 1
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900039
ER
PT J
AU Greenlee, J
Moore, SJ
Smith, J
Greenlee, MHW
Kunkle, R
AF Greenlee, Justin
Moore, S. Jo
Smith, Jodi
Greenlee, M. Heather West
Kunkle, Robert
TI Scrapie transmits to white-tailed deer by the oral route and has a
molecular profile similar to chronic wasting disease and distinct from
the scrapie inoculum
SO PRION
LA English
DT Meeting Abstract
C1 [Greenlee, Justin; Moore, S. Jo; Smith, Jodi; Kunkle, Robert] Natl Anim Dis Ctr, Ames, IA USA.
[Greenlee, M. Heather West] Iowa State Univ, Ames, IA USA.
NR 0
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Z9 0
U1 2
U2 2
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.97
BP S62
EP S62
PG 1
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900115
ER
PT J
AU Kondru, N
Greenlee, J
Greenlee, H
Manne, S
Kong, QZ
Halbur, P
Kanthasamy, A
Kanthasamy, A
AF Kondru, Naveen
Greenlee, Justin
Greenlee, Heather
Manne, Sireesha
Kong, Qingzhong
Halbur, Patrick
Kanthasamy, Arthi
Kanthasamy, Anumantha
TI Development and characterization of an ex-vivo brain slice culture model
of chronic wasting disease
SO PRION
LA English
DT Meeting Abstract
C1 [Kondru, Naveen; Greenlee, Heather; Manne, Sireesha; Kanthasamy, Arthi; Kanthasamy, Anumantha] Iowa State Univ, Coll Vet Med, Dept Biomed Sci, Ames, IA USA.
[Greenlee, Justin] ARS, Virus & Prion Res Unit, Natl Anim Dis Ctr, USDA, Ames, IA USA.
[Kong, Qingzhong] Case Western Reserve Univ, Dept Pathol, Cleveland, OH 44106 USA.
[Kong, Qingzhong] Case Western Reserve Univ, Dept Neurol, Cleveland, OH 44106 USA.
[Halbur, Patrick] Iowa State Univ, Coll Vet Med, Vet Diagnost & Prod Anim Med, Ames, IA USA.
NR 0
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U1 1
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PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.109
BP S68
EP S68
PG 1
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900127
ER
PT J
AU Madsen-Bouterse, S
Zhuang, DY
Schneider, D
Dassanayake, R
Balachandran, A
Mitchell, G
O'Rourke, K
AF Madsen-Bouterse, Sally
Zhuang, Dongyue
Schneider, David
Dassanayake, Rohana
Balachandran, Aru
Mitchell, Gordon
O'Rourke, Katherine
TI Bioassay using ovine and cervid PrP transgenic mice for discrimination
of scrapie and CWD origins in sheep and goats
SO PRION
LA English
DT Meeting Abstract
C1 [Madsen-Bouterse, Sally; Dassanayake, Rohana; O'Rourke, Katherine] Washington State Univ, Coll Vet Med, Dept Vet Microbiol & Pathol, Pullman, WA 99164 USA.
[Zhuang, Dongyue; Schneider, David] ARS, Anim Dis Res Unit, USDA, Pullman, WA USA.
[Balachandran, Aru; Mitchell, Gordon] Canadian Food Inspect Agcy, Natl & OIE Reference Lab Scrapie & CWD, Ottawa Lab Fallowfield, Ottawa, ON, Canada.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.128
BP S78
EP S79
PG 2
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900146
ER
PT J
AU Manne, S
Kondru, N
Haley, N
Nichols, T
Thomsen, B
Main, R
Halbur, P
Kanthasamy, A
Kanthasamy, A
AF Manne, Sireesha
Kondru, Naveen
Haley, Nicholas
Nichols, Tracy
Thomsen, Bruce
Main, Roger
Halbur, Patrick
Kanthasamy, Arthi
Kanthasamy, Anumantha
TI An independent and blinded confirmation of real-time quaking-induced
conversion (RT-QuIC) analysis of cervid rectal biopsies for detection of
chronic wasting disease
SO PRION
LA English
DT Meeting Abstract
C1 [Manne, Sireesha; Kondru, Naveen; Kanthasamy, Arthi; Kanthasamy, Anumantha] Iowa State Univ, Biomed Sci, Ames, IA USA.
[Haley, Nicholas] Kansas State Univ, Manhattan, KS 66506 USA.
[Nichols, Tracy] USDA, Ft Collins, CO USA.
[Thomsen, Bruce] USDA, Natl Vet Serv Labs, Ames, IA 50010 USA.
[Main, Roger; Halbur, Patrick] Iowa State Univ, VDPAM, Ames, IA USA.
NR 0
TC 0
Z9 0
U1 1
U2 2
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.153
BP S93
EP S93
PG 1
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900171
ER
PT J
AU Moore, SJ
Greenlee, MHW
Smith, J
Nicholson, E
Vrentas, C
Greenlee, J
AF Moore, S. Jo
Greenlee, M. Heather West
Smith, Jodi
Nicholson, Eric
Vrentas, Cathy
Greenlee, Justin
TI H-type bovine spongiform encephalopathy associated with E211K prion
protein polymorphism: Clinical and pathologic features in wild-type and
E211K cattle following intracranial inoculation
SO PRION
LA English
DT Meeting Abstract
C1 [Moore, S. Jo; Greenlee, M. Heather West; Smith, Jodi; Nicholson, Eric; Vrentas, Cathy; Greenlee, Justin] USDA, Ames, IA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA O.08
BP S5
EP S5
PG 1
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900009
ER
PT J
AU Munoz-Gutierrez, J
Aguilar-Pierle, S
Schneider, D
Baszler, T
Stanton, J
AF Munoz-Gutierrez, Juan
Aguilar-Pierle, Sebastian
Schneider, David
Baszler, Timothy
Stanton, James
TI Transcriptomic determinants of scrapie prion permissiveness in cultured
ovine microglia
SO PRION
LA English
DT Meeting Abstract
C1 [Munoz-Gutierrez, Juan; Aguilar-Pierle, Sebastian; Schneider, David; Baszler, Timothy] Washington State Univ, Coll Vet Med, Dept Microbiol & Pathol, Pullman, WA 99164 USA.
[Schneider, David] ARS, USDA, Pullman, WA USA.
[Stanton, James] Univ Georgia, Coll Vet Med, Dept Pathol, Athens, GA 30602 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.89
BP S57
EP S58
PG 2
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900107
ER
PT J
AU Silva, C
Schmitz, M
Zerr, I
AF Silva, Christopher
Schmitz, Matthais
Zerr, Inga
TI PrP0\0 mice show behavioral abnormalities that suggest PrPC has a role
in maintaining the cytoskeleton
SO PRION
LA English
DT Meeting Abstract
C1 [Silva, Christopher; Zerr, Inga] USDA, Albany, CA USA.
[Schmitz, Matthais; Zerr, Inga] Univ Med Ctr Gottingen, Dept Neurol, Gottingen, Germany.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.119
BP S73
EP S74
PG 2
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900137
ER
PT J
AU Silva, C
Erickson-Beltran, M
AF Silva, Christopher
Erickson-Beltran, Melissa
TI The view from above: The potential of aerial surveillance in quantifying
CWD infection rates at the herd level
SO PRION
LA English
DT Meeting Abstract
C1 [Silva, Christopher; Erickson-Beltran, Melissa] USDA, Albany, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.118
BP S73
EP S73
PG 1
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900136
ER
PT J
AU Silva, C
Erickson-Beltran, M
AF Silva, Christopher
Erickson-Beltran, Melissa
TI The chemistry of prions: Small molecules, protein conformers and mass
spectrometry
SO PRION
LA English
DT Meeting Abstract
C1 [Silva, Christopher; Erickson-Beltran, Melissa] USDA, Albany, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 2
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.113
BP S70
EP S70
PG 1
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900131
ER
PT J
AU Silva, C
Vazquez-Fernandez, E
Requena, J
AF Silva, Christopher
Vazquez-Fernandez, Ester
Requena, Jesus
TI Using proteinase K to study the structure of prions
SO PRION
LA English
DT Meeting Abstract
C1 [Silva, Christopher] USDA, Albany, CA USA.
[Vazquez-Fernandez, Ester] Univ Alberta, Edmonton, AB, Canada.
[Requena, Jesus] Univ Santiago de Compostela, IDIS, Santiago De Compostela, Spain.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.112
BP S69
EP S70
PG 2
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900130
ER
PT J
AU Vrentas, C
Smith, J
Greenlee, J
Nicholson, E
AF Vrentas, Catherine
Smith, Jodi
Greenlee, Justin
Nicholson, Eric
TI Relationship of PrPSc molecular properties with incubation time in a
natural prion disease host: A characterization of 3 isolates of US sheep
scrapie
SO PRION
LA English
DT Meeting Abstract
C1 [Vrentas, Catherine; Smith, Jodi; Greenlee, Justin; Nicholson, Eric] ARS, USDA, Ames, IA USA.
[Vrentas, Catherine] Frostburg State Univ, Frostburg, MD 21532 USA.
[Smith, Jodi] Iowa State Univ, Ames, IA USA.
NR 0
TC 0
Z9 0
U1 0
U2 1
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1933-6896
EI 1933-690X
J9 PRION
JI Prion
PD APR 24
PY 2015
VL 9
SU 1
MA P.152
BP S92
EP S93
PG 2
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CI0RG
UT WOS:000354444900170
ER
PT J
AU Jarvi, SI
Pitt, WC
Farias, ME
Shiels, L
Severino, MG
Howe, KM
Jacquier, SH
Shiels, AB
Amano, KK
Luiz, BC
Maher, DE
Allison, ML
Holtquist, ZC
Scheibelhut, NT
AF Jarvi, Susan I.
Pitt, William C.
Farias, Margaret E.
Shiels, Laura
Severino, Michael G.
Howe, Kathleen M.
Jacquier, Steven H.
Shiels, Aaron B.
Amano, Karis K.
Luiz, Blaine C.
Maher, Daisy E.
Allison, Maureen L.
Holtquist, Zachariah C.
Scheibelhut, Neil T.
TI Detection of Angiostrongylus cantonensis in the Blood and Peripheral
Tissues of Wild Hawaiian Rats (Rattus rattus) by a Quantitative PCR
(qPCR) Assay
SO PLOS ONE
LA English
DT Article
ID EOSINOPHILIC MENINGITIS; INFECTION; DIAGNOSIS; LUNGWORM
AB The nematode Angiostrongylus cantonensis is a rat lungworm, a zoonotic pathogen that causes human eosinophilic meningitis and ocular angiostrongyliasis characteristic of rat lungworm (RLW) disease. Definitive diagnosis is made by finding and identifying A. cantonensis larvae in the cerebral spinal fluid or by using a custom immunological or molecular test. This study was conducted to determine if genomic DNA from A. cantonensis is detectable by qPCR in the blood or tissues of experimentally infected rats. F1 offspring from wild rats were subjected to experimental infection with RLW larvae isolated from slugs, then blood or tissue samples were collected over multiple time points. Blood samples were collected from 21 rats throughout the course of two trials (15 rats in Trial I, and 6 rats in Trial II). In addition to a control group, each trial had two treatment groups: the rats in the low dose (LD) group were infected by approximately 10 larvae and the rats in the high dose (HD) group were infected with approximately 50 larvae. In Trial I, parasite DNA was detected in cardiac bleed samples from five of five LD rats and five of five HD rats at six weeks post-infection (PI), and three of five LD rats and five of five HD rats from tail tissue. In Trial II, parasite DNA was detected in peripheral blood samples from one of two HD rats at 53 minutes PI, one of two LD rats at 1.5 hours PI, one of two HD rats at 18 hours PI, one of two LD rats at five weeks PI and two of two at six weeks PI, and two of two HD rats at weeks five and six PI. These data demonstrate that parasite DNA can be detected in peripheral blood at various time points throughout RLW infection in rats.
C1 [Jarvi, Susan I.; Farias, Margaret E.; Shiels, Laura; Severino, Michael G.; Howe, Kathleen M.; Jacquier, Steven H.; Amano, Karis K.; Luiz, Blaine C.; Maher, Daisy E.; Allison, Maureen L.; Holtquist, Zachariah C.; Scheibelhut, Neil T.] Univ Hawaii, Coll Pharm, Dept Pharmaceut Sci, Hilo, HI 96720 USA.
[Pitt, William C.; Shiels, Laura; Shiels, Aaron B.] Natl Wildlife Res Ctr, Hawaii Field Stn, USDA APHIS Wildlife Serv, Hilo, HI 96720 USA.
[Pitt, William C.] Smithsonian Conservat Biol Inst, Front Royal, VA 22630 USA.
RP Jarvi, SI (reprint author), Univ Hawaii, Coll Pharm, Dept Pharmaceut Sci, Hilo, HI 96720 USA.
EM jarvi@hawaii.edu
FU UHH Daniel K. Inouye College of Pharmacy; University of Hawaii at Hilo;
United States Department of Agriculture-APHIS National Wildlife Research
Center's National Wildlife Disease Program; University of Hawaii at Hilo
Research Council; National Institute of General Medical Sciences,
National Institutes of Health [P20GM 103466]
FX This project was supported by the UHH Daniel K. Inouye College of
Pharmacy, University of Hawaii at Hilo, United States Department of
Agriculture-APHIS National Wildlife Research Center's National Wildlife
Disease Program, University of Hawaii at Hilo Research Council, and a
grant from the National Institute of General Medical Sciences, National
Institutes of Health, award number: P20GM 103466. The content is solely
the responsibility of the authors and do not necessarily represent the
official views of the National Institutes of Health. The funders had no
role in the study design, data collection and analysis, decision to
publish or preparation of the manuscript.
NR 30
TC 1
Z9 1
U1 4
U2 8
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 24
PY 2015
VL 10
IS 4
AR e0123064
DI 10.1371/journal.pone.0123064
PG 12
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CG6AH
UT WOS:000353376800028
PM 25910229
ER
PT J
AU Kirrane, MJ
de Guzman, LI
Holloway, B
Frake, AM
Rinderer, TE
Whelan, PM
AF Kirrane, Maria J.
de Guzman, Lilia I.
Holloway, Beth
Frake, Amanda M.
Rinderer, Thomas E.
Whelan, Padraig M.
TI Phenotypic and Genetic Analyses of the Varroa Sensitive Hygienic Trait
in Russian Honey Bee (Hymenoptera: Apidae) Colonies
SO PLOS ONE
LA English
DT Article
ID DESTRUCTOR MESOSTIGMATA VARROIDAE; APIS-CERANA FABR; MITE REPRODUCTION;
INFESTATION RATE; JACOBSONI OUD; BEHAVIOR; RESISTANCE; MELLIFERA; BROOD;
RESPONSES
AB Varroa destructorcontinues to threaten colonies of European honey bees. General hygiene, and more specific Varroa Sensitive Hygiene (VSH), provide resistance towards the Varroa mite in a number of stocks. In this study, 32 Russian (RHB) and 14 Italian honey bee colonies were assessed for the VSH trait using two different assays. Firstly, colonies were assessed using the standard VSH behavioural assay of the change in infestation of a highly infested donor comb after a one-week exposure. Secondly, the same colonies were assessed using an "actual brood removal assay" that measured the removal of brood in a section created within the donor combs as a potential alternative measure of hygiene towards Varroa-infested brood. All colonies were then analysed for the recently discovered VSH quantitative trait locus (QTL) to determine whether the genetic mechanisms were similar across different stocks. Based on the two assays, RHB colonies were consistently more hygienic toward Varroa-infested brood than Italian honey bee colonies. The actual number of brood cells removed in the defined section was negatively correlated with the Varroa infestations of the colonies (r(2) = 0.25). Only two (percentages of brood removed and reproductive foundress Varroa) out of nine phenotypic parameters showed significant associations with genotype distributions. However, the allele associated with each parameter was the opposite of that determined by VSH mapping. In this study, RHB colonies showed high levels of hygienic behaviour towards Varroa - infested brood. The genetic mechanisms are similar to those of the VSH stock, though the opposite allele associates in RHB, indicating a stable recombination event before the selection of the VSH stock. The measurement of brood removal is a simple, reliable alternative method of measuring hygienic behaviour towards Varroa mites, at least in RHB stock.
C1 [Kirrane, Maria J.; Whelan, Padraig M.] Natl Univ Ireland Univ Coll Cork, Sch Biol Earth & Environm Sci BEES, Cork, Ireland.
[Kirrane, Maria J.; Whelan, Padraig M.] Natl Univ Ireland Univ Coll Cork, ERI, Cork, Ireland.
[de Guzman, Lilia I.; Holloway, Beth; Frake, Amanda M.; Rinderer, Thomas E.] USDA ARS, Honey Bee Breeding Genet & Physiol Lab, Baton Rouge, LA 70820 USA.
RP Kirrane, MJ (reprint author), Natl Univ Ireland Univ Coll Cork, Sch Biol Earth & Environm Sci BEES, Cork, Ireland.
EM s105692474@student.ucc.ie
FU Irish Research Council, Government of Ireland
FX MJK is funded by the Irish Research Council, Government of Ireland
Postgraduate Scholarship Scheme (www.research.ie). The funders had no
role in study design, data collection and analysis, decision to publish,
or preparation of the manuscript.
NR 45
TC 1
Z9 1
U1 7
U2 42
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 24
PY 2015
VL 10
IS 4
AR e0116672
DI 10.1371/journal.pone.0116672
PG 13
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CG6AH
UT WOS:000353376800002
ER
PT J
AU Sadd, BM
Barribeau, SM
Bloch, G
de Graaf, DC
Dearden, P
Elsik, CG
Gadau, J
Grimmelikhuijzen, CJP
Hasselmann, M
Lozier, JD
Robertson, HM
Smagghe, G
Stolle, E
Van Vaerenbergh, M
Waterhouse, RM
Bornberg-Bauer, E
Klasberg, S
Bennett, AK
Caamara, F
Guigo, R
Hoff, K
Mariotti, M
Munoz-Torres, M
Murphy, T
Santesmasses, D
Amdam, GV
Beckers, M
Beye, M
Biewer, M
Bitondi, MMG
Blaxter, ML
Bourke, AFG
Brown, MJF
Buechel, SD
Cameron, R
Cappelle, K
Carolan, JC
Christiaens, O
Ciborowski, KL
Clarke, DF
Colgan, TJ
Collins, DH
Cridge, AG
Dalmay, T
Dreier, S
du Plessis, L
Duncan, E
Erler, S
Evans, J
Falcon, T
Flores, K
Freitas, FCP
Fuchikawa, T
Gempe, T
Hartfelder, K
Hauser, F
Helbing, S
Humann, FC
Irvine, F
Jermiin, LS
Johnson, CE
Johnson, RM
Jones, AK
Kadowaki, T
Kidner, JH
Koch, V
Kohler, A
Kraus, FB
Lattorff, HMG
Leask, M
Lockett, GA
Mallon, EB
Antonio, DSM
Marxer, M
Meeus, I
Moritz, RFA
Nair, A
Napflin, K
Nissen, I
Niu, J
Nunes, FMF
Oakeshott, JG
Osborne, A
Otte, M
Pinheiro, DG
Rossie, N
Rueppell, O
Santos, CG
Schmid-Hempel, R
Schmitt, BD
Schulte, C
Simoes, ZLP
Soares, MPM
Swevers, L
Winnebeck, EC
Wolschin, F
Yu, N
Zdobnov, EM
Aqrawi, PK
Blankenburg, KP
Coyle, M
Francisco, L
Hernandez, AG
Holder, M
Hudson, ME
Jackson, L
Jayaseelan, J
Joshi, V
Kovar, C
Lee, SL
Mata, R
Mathew, T
Newsham, IF
Ngo, R
Okwuonu, G
Pham, C
Pu, LL
Saada, N
Santibanez, J
Simmons, D
Thornton, R
Venkat, A
Walden, KKO
Wu, YQ
Debyser, G
Devreese, B
Asher, C
Blommaert, J
Chipman, AD
Chittka, L
Fouks, B
Liu, J
O'Neill, MP
Sumner, S
Puiu, D
Qu, J
Salzberg, SL
Scherer, SE
Muzny, DM
Richards, S
Robinson, GE
Gibbs, RA
Schmid-Hempel, P
Worley, KC
AF Sadd, Ben M.
Barribeau, Seth M.
Bloch, Guy
de Graaf, Dirk C.
Dearden, Peter
Elsik, Christine G.
Gadau, Juergen
Grimmelikhuijzen, Cornelis J. P.
Hasselmann, Martin
Lozier, Jeffrey D.
Robertson, Hugh M.
Smagghe, Guy
Stolle, Eckart
Van Vaerenbergh, Matthias
Waterhouse, Robert M.
Bornberg-Bauer, Erich
Klasberg, Steffen
Bennett, Anna K.
Camara, Francisco
Guigo, Roderic
Hoff, Katharina
Mariotti, Marco
Munoz-Torres, Monica
Murphy, Terence
Santesmasses, Didac
Amdam, Gro V.
Beckers, Matthew
Beye, Martin
Biewer, Matthias
Bitondi, Marcia M. G.
Blaxter, Mark L.
Bourke, Andrew F. G.
Brown, Mark J. F.
Buechel, Severine D.
Cameron, Rossanah
Cappelle, Kaat
Carolan, James C.
Christiaens, Olivier
Ciborowski, Kate L.
Clarke, David F.
Colgan, Thomas J.
Collins, David H.
Cridge, Andrew G.
Dalmay, Tamas
Dreier, Stephanie
du Plessis, Louis
Duncan, Elizabeth
Erler, Silvio
Evans, Jay
Falcon, Tiago
Flores, Kevin
Freitas, Flavia C. P.
Fuchikawa, Taro
Gempe, Tanja
Hartfelder, Klaus
Hauser, Frank
Helbing, Sophie
Humann, Fernanda C.
Irvine, Frano
Jermiin, Lars S.
Johnson, Claire E.
Johnson, Reed M.
Jones, Andrew K.
Kadowaki, Tatsuhiko
Kidner, Jonathan H.
Koch, Vasco
Koehler, Arian
Kraus, F. Bernhard
Lattorff, H. Michael G.
Leask, Megan
Lockett, Gabrielle A.
Mallon, Eamonn B.
Antonio, David S. Marco
Marxer, Monika
Meeus, Ivan
Moritz, Robin F. A.
Nair, Ajay
Napflin, Kathrin
Nissen, Inga
Niu, Jinzhi
Nunes, Francis M. F.
Oakeshott, John G.
Osborne, Amy
Otte, Marianne
Pinheiro, Daniel G.
Rossie, Nina
Rueppell, Olav
Santos, Carolina G.
Schmid-Hempel, Regula
Schmitt, Bjoern D.
Schulte, Christina
Simoes, Zila L. P.
Soares, Michelle P. M.
Swevers, Luc
Winnebeck, Eva C.
Wolschin, Florian
Yu, Na
Zdobnov, Evgeny M.
Aqrawi, Peshtewani K.
Blankenburg, Kerstin P.
Coyle, Marcus
Francisco, Liezl
Hernandez, Alvaro G.
Holder, Michael
Hudson, Matthew E.
Jackson, LaRonda
Jayaseelan, Joy
Joshi, Vandita
Kovar, Christie
Lee, Sandra L.
Mata, Robert
Mathew, Tittu
Newsham, Irene F.
Ngo, Robin
Okwuonu, Geoffrey
Pham, Christopher
Pu, Ling-Ling
Saada, Nehad
Santibanez, Jireh
Simmons, DeNard
Thornton, Rebecca
Venkat, Aarti
Walden, Kimberly K. O.
Wu, Yuan-Qing
Debyser, Griet
Devreese, Bart
Asher, Claire
Blommaert, Julie
Chipman, Ariel D.
Chittka, Lars
Fouks, Bertrand
Liu, Jisheng
O'Neill, Meaghan P.
Sumner, Seirian
Puiu, Daniela
Qu, Jiaxin
Salzberg, Steven L.
Scherer, Steven E.
Muzny, Donna M.
Richards, Stephen
Robinson, Gene E.
Gibbs, Richard A.
Schmid-Hempel, Paul
Worley, Kim C.
TI The genomes of two key bumblebee species with primitive eusocial
organization
SO GENOME BIOLOGY
LA English
DT Article
ID BEE APIS-MELLIFERA; SEX-DETERMINATION PATHWAY; MULTIPLE SEQUENCE
ALIGNMENT; BOMBUS-TERRESTRIS LINNAEUS; MALE COURTSHIP BEHAVIOR;
HONEY-BEE; DROSOPHILA-MELANOGASTER; PHYLOGENETIC ANALYSES; DNA
METHYLATION; HIGH-THROUGHPUT
AB Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats.
Results: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits.
Conclusions: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation.
C1 [Sadd, Ben M.] Illinois State Univ, Sch Biol Sci, Normal, IL 61790 USA.
[Sadd, Ben M.; Barribeau, Seth M.; Buechel, Severine D.; Marxer, Monika; Napflin, Kathrin; Schmid-Hempel, Regula; Schmid-Hempel, Paul] ETH, Inst Integrat Biol, Expt Ecol, CH-8092 Zurich, Switzerland.
[Barribeau, Seth M.] E Carolina Univ, Dept Biol, Greenville, NC 27858 USA.
[Bloch, Guy; Fuchikawa, Taro; Chipman, Ariel D.] Hebrew Univ Jerusalem, Alexander Silberman Inst Life Sci, Dept Ecol Evolut & Behav, Jerusalem, Israel.
[de Graaf, Dirk C.; Van Vaerenbergh, Matthias] Univ Ghent, Fac Sci, Lab Zoophysiol, B-9000 Ghent, Belgium.
[Dearden, Peter; Cameron, Rossanah; Cridge, Andrew G.; Duncan, Elizabeth; Irvine, Frano; Leask, Megan; Nair, Ajay; Osborne, Amy; Blommaert, Julie] Univ Otago, Dept Biochem, Labo Evolut & Dev Genet, Dunedin 9054, New Zealand.
[Dearden, Peter; Cameron, Rossanah; Cridge, Andrew G.; Duncan, Elizabeth; Irvine, Frano; Leask, Megan; Nair, Ajay; Osborne, Amy; Blommaert, Julie; O'Neill, Meaghan P.] Univ Otago, Dept Biochem, Natl Res Ctr Growth & Dev, Dunedin 9054, New Zealand.
[Elsik, Christine G.] Univ Missouri, Div Plant Sci, Div Anim Sci, Columbia, MO 65211 USA.
[Elsik, Christine G.] Univ Missouri, MU Informat Inst, Columbia, MO 65211 USA.
[Elsik, Christine G.; Bennett, Anna K.; Munoz-Torres, Monica; Venkat, Aarti] Georgetown Univ, Dept Biol, Washington, DC 20057 USA.
[Gadau, Juergen; Amdam, Gro V.; Wolschin, Florian] Arizona State Univ, Sch Life Sci, Tempe, AZ 85287 USA.
[Grimmelikhuijzen, Cornelis J. P.; Hauser, Frank] Univ Copenhagen, Dept Biol, Ctr Funct & Comparat Insect Gen, Copenhagen, Denmark.
[Hasselmann, Martin; Biewer, Matthias] Univ Hohenheim, Inst Anim Sci, D-70599 Stuttgart, Germany.
[Lozier, Jeffrey D.] Univ Alabama, Dept Biol Sci, Tuscaloosa, AL 35487 USA.
[Robertson, Hugh M.; Cappelle, Kaat; Johnson, Claire E.; Walden, Kimberly K. O.] Univ Illinois, Dept Entomol, Urbana, IL 61801 USA.
[Smagghe, Guy; Christiaens, Olivier; Meeus, Ivan; Niu, Jinzhi; Yu, Na; Liu, Jisheng] Univ Ghent, Fac Biosci Engn, Dept Crop Protect, Lab Agrozool, B-9000 Ghent, Belgium.
[Stolle, Eckart; Erler, Silvio; Helbing, Sophie; Kidner, Jonathan H.; Kraus, F. Bernhard; Lattorff, H. Michael G.; Moritz, Robin F. A.; Otte, Marianne; Fouks, Bertrand] Univ Halle Wittenberg, Inst Biol, Wittenberg, Germany.
[Waterhouse, Robert M.; Zdobnov, Evgeny M.] Univ Geneva, Sch Med, Dept Genet Med & Dev, CH-1211 Geneva, Switzerland.
[Waterhouse, Robert M.; Zdobnov, Evgeny M.] Swiss Inst Bioinformat, CH-1211 Geneva, Switzerland.
[Waterhouse, Robert M.] MIT, Comp Sci & Artificial Intelligence Lab, Cambridge, MA 02139 USA.
[Waterhouse, Robert M.] MIT & Harvard, Broad Inst, Cambridge Ctr 7, Cambridge, MA 02142 USA.
[Bornberg-Bauer, Erich; Klasberg, Steffen] Univ Munster, Inst Evolut & Biodivers, D-48149 Munster, Germany.
[Camara, Francisco; Guigo, Roderic; Mariotti, Marco; Santesmasses, Didac] Ctr Genom Regulat CRG, Barcelona 08003, Spain.
[Camara, Francisco; Guigo, Roderic; Mariotti, Marco; Santesmasses, Didac] UPF, Barcelona, Spain.
[Hoff, Katharina] Ernst Moritz Arndt Univ Greifswald, Inst Math & Comp Sci, D-17487 Greifswald, Germany.
[Munoz-Torres, Monica] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Genom Div, Berkeley, CA 94720 USA.
[Murphy, Terence] Natl Lib Med, Natl Ctr Biotechnol Informat, Bethesda, MD 20894 USA.
[Amdam, Gro V.; Wolschin, Florian] Norwegian Univ Food Sci, Dept Chem Biotechnol & Food Sci, N-1432 As, Norway.
[Beckers, Matthew] Univ E Anglia, Sch Comp Sci, Norwich NR4 7TJ, Norfolk, England.
[Beye, Martin; Gempe, Tanja; Koch, Vasco; Koehler, Arian; Nissen, Inga; Rossie, Nina; Schmitt, Bjoern D.; Schulte, Christina] Univ Dusseldorf, Inst Evolut Genet, D-40225 Dusseldorf, Germany.
[Biewer, Matthias] Univ Cologne, Inst Genet, Cologne, Germany.
[Bitondi, Marcia M. G.; Simoes, Zila L. P.] Univ Sao Paulo, Dept Biol, Fac Filosofia Ciencias & Letras Ribeirao Preto, BR-14040901 Ribeirao Preto, Brazil.
[Blaxter, Mark L.] Univ Edinburgh, Ashworth Labs, Inst Evolutionary Biol & Edinburgh Gen, Edinburgh EH9 3FL, Midlothian, Scotland.
[Bourke, Andrew F. G.; Collins, David H.; Dalmay, Tamas] Univ E Anglia, Sch Biol Sci, Norwich NR4 7TJ, Norfolk, England.
[Brown, Mark J. F.] Royal Holloway Univ London, Sch Biol Sci, London, England.
[Carolan, James C.] Maynooth Univ, Dept Biol, Co, Kildare, Ireland.
[Ciborowski, Kate L.; Sumner, Seirian] Univ Bristol, Sch Biol Sci, Bristol BS8 1TQ, Avon, England.
[Clarke, David F.; Jermiin, Lars S.; Oakeshott, John G.] CSIRO, Land & Water Flagship, Canberra, ACT, Australia.
[Colgan, Thomas J.] Trin Coll Dublin, Sch Nat Sci, Dept Zool, Dublin, Ireland.
[Dreier, Stephanie; Asher, Claire] Zool Soc London, Inst Zool, London NW1 4RY, England.
[du Plessis, Louis] ETH, Inst Integrat Biol, Theoret Biol, CH-8092 Zurich, Switzerland.
[du Plessis, Louis] Swiss Inst Bioinformat, Lausanne, Switzerland.
[du Plessis, Louis] Swiss Fed Inst Technol, Dept Biosyst Sci & Engn, Computat Evolut, Basel, Switzerland.
[Evans, Jay] USDA ARS, Bee Res Lab, Washington, DC 20250 USA.
[Falcon, Tiago; Freitas, Flavia C. P.; Hartfelder, Klaus; Antonio, David S. Marco; Soares, Michelle P. M.] Univ Sao Paulo, Dept Genet, Fac Med Ribeirao Preto, BR-14040900 Ribeirao Preto, Brazil.
[Flores, Kevin] N Carolina State Univ, Ctr Res Sci Computat, Raleigh, NC 27695 USA.
[Fuchikawa, Taro] Kyoto Univ, Grad Sch Agr, Lab Insect Ecol, Kyoto, Japan.
[Santos, Carolina G.] Univ Sao Paulo, Dept Biol Celular & Mol & Bioagentes Patogen, Fac Med Ribeirao Preto, BR-14040900 Ribeirao Preto, Brazil.
[Humann, Fernanda C.] Inst Fed Educ Ciencia & Tecnol Sao Paulo, BR-15991502 Matao, Brazil.
[Johnson, Reed M.] Ohio State Univ, Dept Entomol, Wooster, OH 44791 USA.
[Jones, Andrew K.] Oxford Brookes Univ, Fac Hlth & Life Sci, Dept Biol & Med Sci, Oxford OX3 0BP, England.
[Kadowaki, Tatsuhiko] Xian Jiaotong Liverpool Univ, Dept Biol Sci, Suzhou, Peoples R China.
[Kraus, F. Bernhard] Univ Hosp Halle Saale, Dept Lab Med, Halle, Germany.
[Lattorff, H. Michael G.] German Ctr Integrat Biodivers Res iDiv, Leipzig, Germany.
[Lockett, Gabrielle A.] Univ Southampton, Southampton, Hants, England.
[Mallon, Eamonn B.] Univ Leicester, Dept Biol, Leicester, Leics, England.
[Nunes, Francis M. F.] Univ Fed Sao Carlos, Ctr Ciencias Biol & Saude, Dept Genet & Evolucao, BR-13565905 Sao Carlos, SP, Brazil.
[Pinheiro, Daniel G.] Univ Estadual Paulista, Fac Ciencias Agr & Vet, Dept Tecnol, BR-14884900 Jaboticabal, Brazil.
[Rueppell, Olav; Fouks, Bertrand] Univ N Carolina, Dept Biol, Greensboro, NC 27403 USA.
[Swevers, Luc] Natl Ctr Sci Res Demokritos, Inst Biosci & Applicat, Athens, Greece.
[Winnebeck, Eva C.] Univ Munich, Munich, Germany.
[Aqrawi, Peshtewani K.; Blankenburg, Kerstin P.; Coyle, Marcus; Francisco, Liezl; Holder, Michael; Jackson, LaRonda; Jayaseelan, Joy; Joshi, Vandita; Kovar, Christie; Lee, Sandra L.; Mata, Robert; Mathew, Tittu; Ngo, Robin; Okwuonu, Geoffrey; Pham, Christopher; Pu, Ling-Ling; Saada, Nehad; Santibanez, Jireh; Simmons, DeNard; Thornton, Rebecca; Wu, Yuan-Qing; Qu, Jiaxin; Muzny, Donna M.; Richards, Stephen; Gibbs, Richard A.; Worley, Kim C.] Baylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, Houston, TX 77030 USA.
[Hernandez, Alvaro G.] Univ Illinois, Roy J Carver Biotechnol, Urbana, IL 61801 USA.
[Hudson, Matthew E.] Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
[Hudson, Matthew E.] Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USA.
[Newsham, Irene F.] MD Anderson Canc Ctr, Sch Hlth Profess, Mol Genet Technol Program, Unit 2, Houston, TX 77025 USA.
[Venkat, Aarti] Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA.
[Debyser, Griet; Devreese, Bart] Univ Ghent, Dept Biochem & Microbiol, Lab Prot Biochem & Biomol Engn, B-9000 Ghent, Belgium.
[Chittka, Lars] Queen Mary Univ London, Sch Biol & Chem Sci, Dept Biol & Expt Psychol, London E1 4NS, England.
[Liu, Jisheng; Scherer, Steven E.] Guangzhou Univ, Sch Life Sci, Guangzhou, Guangdong, Peoples R China.
[Puiu, Daniela; Salzberg, Steven L.] Johns Hopkins Univ, McKusick Nathans Inst Genet Med, Ctr Computat Biol, Baltimore, MD 21205 USA.
[Robinson, Gene E.] Univ Illinois, Neurosci Program, Dept Entomol, Carl R Woese Inst Genom Biol, Urbana, IL 61801 USA.
RP Sadd, BM (reprint author), Illinois State Univ, Sch Biol Sci, Normal, IL 61790 USA.
EM bmsadd@ilstu.edu
RI Jermiin, Lars/C-2458-2009; Johnson, Reed/H-3742-2011; Lattorff, H.
Michael/F-6287-2010; Erler, Silvio/B-4162-2012; Hauser,
Frank/M-2952-2014; Marco Antonio, David/G-2642-2012; JAYASEELAN, JOY
CHRISTINA/F-9824-2015; Oakeshott, John/B-5365-2009; Camara Ferreira,
Francisco/G-9841-2015; Kraus, Frank Bernhard/B-8172-2011; Guigo,
Roderic/D-1303-2010; Hudson, Matthew/A-4438-2008; Hartfelder,
Klaus/A-4293-2009; Evans, Jay/C-8408-2012; Dearden, Peter/B-7607-2008;
Waterhouse, Robert/A-1858-2010; Bornberg-Bauer, Erich/A-1563-2013;
Freitas, Flavia /M-4720-2014; Lopes, Tiago/G-3409-2016; Blaxter,
Mark/B-4113-2010; Nunes, Francis/F-5871-2010; Zdobnov,
Evgeny/K-1133-2012; Bitondi, Marcia/E-8014-2012; Elsik,
Christine/C-4120-2017; Moritz, Robin/K-6053-2012
OI Stolle, Eckart/0000-0001-7638-4061; Cridge, Andrew/0000-0002-1399-5188;
Lockett, Gabrielle A./0000-0003-3759-2145; Napflin,
Kathrin/0000-0002-1088-5282; Bloch, Guy/0000-0003-1624-4926; Winnebeck,
Eva/0000-0002-0717-9432; Duncan, Elizabeth/0000-0002-1841-504X;
Childers, Anna/0000-0002-0747-8539; Sadd, Ben/0000-0003-3136-5144;
Rueppell, Olav/0000-0001-5370-4229; Jermiin, Lars/0000-0002-9619-3809;
Lattorff, H. Michael/0000-0002-8603-6332; Erler,
Silvio/0000-0002-9425-8103; Hauser, Frank/0000-0001-5563-2345;
JAYASEELAN, JOY CHRISTINA/0000-0002-7759-0139; Camara Ferreira,
Francisco/0000-0002-1971-5466; Kraus, Frank
Bernhard/0000-0003-4354-9952; Guigo, Roderic/0000-0002-5738-4477;
Hudson, Matthew/0000-0002-4737-0936; Hartfelder,
Klaus/0000-0001-7981-8427; Evans, Jay/0000-0002-0036-4651; Dearden,
Peter/0000-0001-7790-9675; Waterhouse, Robert/0000-0003-4199-9052;
Bornberg-Bauer, Erich/0000-0002-1826-3576; Freitas, Flavia
/0000-0002-3162-4890; Lopes, Tiago/0000-0002-8936-0381; Blaxter,
Mark/0000-0003-2861-949X; Nunes, Francis/0000-0002-7769-3058; Bitondi,
Marcia/0000-0002-5619-6378; Elsik, Christine/0000-0002-4248-7713;
Moritz, Robin/0000-0003-0791-887X
FU National Institutes of Health (NIH) [DP1 OD006416, U54 HG003273];
Agriculture and Food Research Initiative Competitive grant from the USDA
National Institute of Food and Agriculture [2010-65106-21301]; Research
Council of Norway (NFR); PEW Charitable Trust; University of East
Anglia, UK; Israel Science Foundation (ISF); Biotechnology and
Biological Sciences Research Council, UK; University of East Anglia;
University of Alabama College of Arts and Sciences; Sao Paulo Research
Foundation grant (FAPESP) [11/03171-5]; Marie Curie International
Outgoing Fellowship [PIOF-GA-2011-303312]; Swiss National Science
Foundation [31003A-125350, 31003A-143936]; New Faculty Initiative Grant
(NFIG) from Illinois State University College of Arts and Sciences; DFG;
Instituto Nacional de Bioinformatica (INB) from ISCIII in Spain
FX The sequencing, annotation, and assembly of the B. impatiens genome was
supported by National Institutes of Health (NIH) Pioneer Award DP1
OD006416 (GER). The B. terrestris genome sequencing, assembly and
project coordination was supported by NIH grant U54 HG003273 (RAG).
Contributions from members of the CGE lab were supported by Agriculture
and Food Research Initiative Competitive grant no. 2010-65106-21301 from
the USDA National Institute of Food and Agriculture. GVA was supported
by the Research Council of Norway (NFR) and the PEW Charitable Trust. MB
was supported by a student fellowship from the University of East
Anglia, UK. GB was supported by the Israel Science Foundation (ISF). DHC
was supported by a studentship funded by the Biotechnology and
Biological Sciences Research Council, UK, and the University of East
Anglia. JDL was supported by the University of Alabama College of Arts
and Sciences. ZPLS was supported by a Sao Paulo Research Foundation
grant (FAPESP number 11/03171-5). RMW was supported by Marie Curie
International Outgoing Fellowship PIOF-GA-2011-303312 and by Swiss
National Science Foundation awards 31003A-125350 and 31003A-143936 to
EMZ. BMS was supported by a New Faculty Initiative Grant (NFIG) from
Illinois State University College of Arts and Sciences. MHasselmann
received financial support from the DFG. The work of FC, RG, and MM was
supported by the Instituto Nacional de Bioinformatica (INB) from ISCIII
in Spain. We thank Justin Reese and Christopher Childers for setting up
genome annotation tools at Hymenoptera Genome Database.
NR 213
TC 52
Z9 54
U1 31
U2 162
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1474-760X
J9 GENOME BIOL
JI Genome Biol.
PD APR 24
PY 2015
VL 16
AR 76
DI 10.1186/s13059-015-0623-3
PG 31
WC Biotechnology & Applied Microbiology; Genetics & Heredity
SC Biotechnology & Applied Microbiology; Genetics & Heredity
GA CG9YT
UT WOS:000353676700001
PM 25908251
ER
PT J
AU Barribeau, SM
Sadd, BM
du Plessis, L
Brown, MJF
Buechel, SD
Cappelle, K
Carolan, JC
Christiaens, O
Colgan, TJ
Erler, S
Evans, J
Helbing, S
Karaus, E
Lattorff, HMG
Marxer, M
Meeus, I
Napflin, K
Niu, J
Schmid-Hempel, R
Smagghe, G
Waterhouse, RM
Yu, N
Zdobnov, EM
Schmid-Hempel, P
AF Barribeau, Seth M.
Sadd, Ben M.
du Plessis, Louis
Brown, Mark J. F.
Buechel, Severine D.
Cappelle, Kaat
Carolan, James C.
Christiaens, Olivier
Colgan, Thomas J.
Erler, Silvio
Evans, Jay
Helbing, Sophie
Karaus, Elke
Lattorff, H. Michael G.
Marxer, Monika
Meeus, Ivan
Naepflin, Kathrin
Niu, Jinzhi
Schmid-Hempel, Regula
Smagghe, Guy
Waterhouse, Robert M.
Yu, Na
Zdobnov, Evgeny M.
Schmid-Hempel, Paul
TI A depauperate immune repertoire precedes evolution of sociality in bees
SO GENOME BIOLOGY
LA English
DT Article
ID BUMBLEBEE BOMBUS-TERRESTRIS; MULTIPLE SEQUENCE ALIGNMENT;
CODON-SUBSTITUTION MODELS; AMINO-ACID SITES; MAXIMUM-LIKELIHOOD;
POSITIVE SELECTION; DISEASE RESISTANCE; HONEYBEE COLONIES; GENETIC
DIVERSITY; HIERARCHICAL CATALOG
AB Background: Sociality has many rewards, but can also be dangerous, as high population density and low genetic diversity, common in social insects, is ideal for parasite transmission. Despite this risk, honeybees and other sequenced social insects have far fewer canonical immune genes relative to solitary insects. Social protection from infection, including behavioral responses, may explain this depauperate immune repertoire. Here, based on full genome sequences, we describe the immune repertoire of two ecologically and commercially important bumblebee species that diverged approximately 18 million years ago, the North American Bombus impatiens and European Bombus terrestris.
Results: We find that the immune systems of these bumblebees, two species of honeybee, and a solitary leafcutting bee, are strikingly similar. Transcriptional assays confirm the expression of many of these genes in an immunological context and more strongly in young queens than males, affirming Bateman's principle of greater investment in female immunity. We find evidence of positive selection in genes encoding antiviral responses, components of the Toll and JAK/STAT pathways, and serine protease inhibitors in both social and solitary bees. Finally, we detect many genes across pathways that differ in selection between bumblebees and honeybees, or between the social and solitary clades.
Conclusions: The similarity in immune complement across a gradient of sociality suggests that a reduced immune repertoire predates the evolution of sociality in bees. The differences in selection on immune genes likely reflect divergent pressures exerted by parasites across social contexts.
C1 [Barribeau, Seth M.; Sadd, Ben M.; Buechel, Severine D.; Karaus, Elke; Marxer, Monika; Naepflin, Kathrin; Schmid-Hempel, Regula; Schmid-Hempel, Paul] ETH, Inst Integrat Biol, Expt Ecol, CH-8092 Zurich, Switzerland.
[Barribeau, Seth M.] E Carolina Univ, Dept Biol, Greenville, NC 27858 USA.
[Sadd, Ben M.] Illinois State Univ, Sch Biol Sci, Normal, IL 61790 USA.
[du Plessis, Louis] ETH, Inst Integrat Biol, Theoret Biol, CH-8092 Zurich, Switzerland.
[du Plessis, Louis] ETH, Dept Biosyst Sci & Evolut, Computat Evolut, CH-4058 Basel, Switzerland.
[du Plessis, Louis; Waterhouse, Robert M.; Zdobnov, Evgeny M.] Swiss Inst Bioinformat, CH-1211 Lausanne, Switzerland.
[Brown, Mark J. F.] Royal Holloway Univ London, Sch Biol Sci, London TW20 0EX, England.
[Cappelle, Kaat; Christiaens, Olivier; Meeus, Ivan; Niu, Jinzhi; Smagghe, Guy; Yu, Na] Univ Ghent, Fac Biosci Engn, Dept Crop Protect, B-9000 Ghent, Belgium.
[Carolan, James C.] Maynooth Univ, Dept Biol, Maynooth, Kildare, Ireland.
[Colgan, Thomas J.] Univ Dublin Trinity Coll, Sch Nat Sci, Dept Zool, Dublin 2, Ireland.
[Colgan, Thomas J.] Queen Mary Univ London, Sch Biol & Chem Sci, London E1 41NS, England.
[Erler, Silvio] Univ Agr Sci & Vet Med Cluj Napoca, Dept Apiculture & Sericulture, Cluj Napoca 400372, Romania.
[Erler, Silvio; Helbing, Sophie; Lattorff, H. Michael G.] Univ Halle Wittenberg, Inst Biol, Mol Okol, D-06120 Wittenberg, Germany.
[Evans, Jay] USDA ARS, Bee Res Lab, Beltsville, MD 20705 USA.
[Lattorff, H. Michael G.] German Ctr Integrat Biodivers Res iDiv, D-04103 Leipzig, Germany.
[Lattorff, H. Michael G.] Univ Halle Wittenberg, Inst Biol, Tierphysiol, D-06099 Wittenberg, Germany.
[Niu, Jinzhi; Smagghe, Guy] Southwest Univ, Coll Plant Protect, Chongqing 400716, Peoples R China.
[Waterhouse, Robert M.; Zdobnov, Evgeny M.] Univ Geneva, Sch Med, Dept Genet Med & Dev, CH-1211 Geneva, Switzerland.
[Waterhouse, Robert M.] MIT, Comp Sci & Artificial Intelligence Lab, Cambridge, MA 02139 USA.
[Waterhouse, Robert M.] MIT & Harvard, Broad Inst, Cambridge, MA 02142 USA.
RP Barribeau, SM (reprint author), ETH, Inst Integrat Biol, Expt Ecol, CH-8092 Zurich, Switzerland.
EM barribeaus14@ecu.edu
RI Erler, Silvio/B-4162-2012; Lattorff, H. Michael/F-6287-2010; Evans,
Jay/C-8408-2012; Waterhouse, Robert/A-1858-2010; Zdobnov,
Evgeny/K-1133-2012;
OI Erler, Silvio/0000-0002-9425-8103; Lattorff, H.
Michael/0000-0002-8603-6332; Evans, Jay/0000-0002-0036-4651; Waterhouse,
Robert/0000-0003-4199-9052; du Plessis, Louis/0000-0003-0352-6289;
Napflin, Kathrin/0000-0002-1088-5282; Sadd, Ben/0000-0003-3136-5144
FU ERC [268853 RESIST]; Marie Curie International Outgoing Fellowship;
Swiss National Science Foundation [31003A-143936]
FX Some of these data were generated at the Genetic Diversity Centre of ETH
Zurich. We thank the Bumblebee Genome Consortium
(http://hymenopteragenome.org/beebase/) for providing genomic resources
that were used for this study. This work was supported by an ERC
Advanced Grant (no. 268853 RESIST) to PSH. RMW supported by a Marie
Curie International Outgoing Fellowship and a Swiss National Science
Foundation award 31003A-143936 to EMZ.
NR 87
TC 31
Z9 32
U1 10
U2 64
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1465-6906
EI 1474-760X
J9 GENOME BIOL
JI Genome Biol.
PD APR 24
PY 2015
VL 16
AR 83
DI 10.1186/s13059-015-0628-y
PG 20
WC Biotechnology & Applied Microbiology; Genetics & Heredity
SC Biotechnology & Applied Microbiology; Genetics & Heredity
GA CG5ZS
UT WOS:000353375000001
PM 25908406
ER
PT J
AU Griswold, T
AF Griswold, Terry
TI A review of Trachusoides Michener and Griswold (Hymenoptera:
Megachilidae)
SO ZOOTAXA
LA English
DT Letter
DE taxonomy; resin bee; Indo-Malaysian Region
AB The rare genus Trachusoides, previously known only from a single species inhabiting the Western Ghats of India, is reviewed. Trachusoides elsieae, new species, is described from Laos, additional records for T. simplex are documented, and a key to separate the species is provided.
C1 Utah State Univ, USDA ARS, Bee Biol & Systemat Lab, Logan, UT 84322 USA.
RP Griswold, T (reprint author), Utah State Univ, USDA ARS, Bee Biol & Systemat Lab, Logan, UT 84322 USA.
EM terry.griswold@ars.usda.gov
NR 7
TC 0
Z9 0
U1 0
U2 2
PU MAGNOLIA PRESS
PI AUCKLAND
PA PO BOX 41383, AUCKLAND, ST LUKES 1030, NEW ZEALAND
SN 1175-5326
EI 1175-5334
J9 ZOOTAXA
JI Zootaxa
PD APR 23
PY 2015
VL 3949
IS 1
BP 147
EP 150
PG 4
WC Zoology
SC Zoology
GA CH7FL
UT WOS:000354201000010
PM 25947799
ER
PT J
AU Friedman, M
AF Friedman, Mendel
TI Antibiotic-Resistant Bacteria: Prevalence in Food and Inactivation by
Food-Compatible Compounds and Plant Extracts
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Review
DE microbial food Safety; antibiotic-resistant bacteria;
multidrug-resistant bacteria; susceptible bacteria; prevalence in food;
animal feed; human food; organic food; infectious disease; inactivation;
resistant mechanisms; antimicrobial mechanisms; quorum sensing;
bacterial SOS response; research needs
ID GRAM-NEGATIVE BACTERIA; ESCHERICHIA-COLI O157H7;
LIPOPOLYSACCHARIDE-INDUCED ENDOTOXEMIA; MULTIRESISTANT
STAPHYLOCOCCUS-AUREUS; ANTIMICROBIAL DRUG-RESISTANCE;
CAMPYLOBACTER-JEJUNI STRAINS; CONVENTIONAL POULTRY FARMS; PATHOGEN
BACILLUS-CEREUS; ESSENTIAL OIL COMPONENTS; MULTIDRUG EFFLUX PUMPS
AB Foodborne antibiotic-resistant pathogeinc bacteria such as Campylobacter jejuni, Bacillus cereus, Clostridium perfringens, Escherichia coli, Salmonella enterica, Staphylococcus aureus, Vibrio cholerae, and Vibrio parahemolyticus can adversely affect animal human health, but a better understanding of the factors involved in their pathogenesis is needed. To help meet this need, this overview surveys and interprets much of our current knowledge of antibiotic (multidrug)-resistant bacteria in the food chain and the implications for microbial food safety and animal and human health. Topics covered include the origin and prevalence of resistant bacteria in the food chain (dairy, meat, poultry, seafood, and herbal products, produce, and eggs), their inactivation by different classes of compounds and plant extracts and by the use of chlorine and physicochemical methods (heat, UV light, pulsed electric fields, and high pressure), the synergistic antimicrobial effects of combinations of natural antimicrobials with medicinal antibiotics, and mechanisms of antimicrobial activities and resistant effects. Possible areas for future research are suggested. Plant-derived and other safe natural antimicrobial compounds have the potential to control the prevalence of both susceptible and resistant pathogens in various environments. The collated information and suggested research will hopefully contribute to a better understanding of approaches that could be used to minimize the presence of resistant pathogens in animal feed and human food, thus reducing adverse effects, improving microbial food safety, and helping to prevent or treat animal and human infections.
C1 ARS, USDA, Western Reg Res Ctr, Albany, CA 94710 USA.
RP Friedman, M (reprint author), ARS, USDA, Western Reg Res Ctr, Albany, CA 94710 USA.
EM mendel.friedman@ars.usda.gov
OI Friedman, Mendel/0000-0003-2582-7517
NR 223
TC 16
Z9 16
U1 31
U2 139
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
EI 1520-5118
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD APR 22
PY 2015
VL 63
IS 15
BP 3805
EP 3822
DI 10.1021/acs.jafc.5b00778
PG 18
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA CG9AC
UT WOS:000353605800001
PM 25856120
ER
PT J
AU Simsek, M
Quezada-Calvillo, R
Ferruzzi, MG
Nichols, BL
Hamaker, BR
AF Simsek, Meric
Quezada-Calvillo, Roberto
Ferruzzi, Mario G.
Nichols, Buford L.
Hamaker, Bruce R.
TI Dietary Phenolic Compounds Selectively Inhibit the Individual Subunits
of Maltase-Glucoamylase and Sucrase-Isomaltase with the Potential of
Modulating Glucose Release
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE alpha-glucosidases; inhibition; maltase-glucoamylase; phenolics;
sucrase-isomaltase
ID INTESTINAL ALPHA-GLUCOSIDASE; GREEN TEA CATECHINS; CHLOROGENIC ACIDS;
STARCH DIGESTION; POSTPRANDIAL HYPERGLYCEMIA; ENZYME SPECIFICITIES;
SUBSTRATE BRAKE; CAFFEIC ACID; DISACCHARIDASES; POLYPHENOLS
AB In this study, it was hypothesized that dietary phenolic compounds selectively inhibit the individual C- and N-terminal (Ct, Nt) subunits of the two small intestinal alpha-glucosidases, maltase-glucoamylase (MGAM) and sucrase-isomaltase (SI), for a modulated glycemic carbohydrate digestion. The inhibition by chlorogenic acid, caffeic acid, gallic acid, (+)-catechin, and (-)-epigallocatechin gallate (EGCG) on individual recombinant human Nt-MGAM and Nt-SI and on mouse Ct-MGAM and Ct-SI was assayed using maltose as the substrate. Inhibition constants, inhibition mechanisms, and IC50 values for each combination of phenolic compound and enzymatic subunit were determined. EGCG and chlorogenic acid were found to be more potent inhibitors for selectively inhibiting the two subunits with highest activity, Ct-MGAM and Ct-SI. All compounds displayed noncompetitive type inhibition. Inhibition of fast-digesting Ct-MGAM and Ct-SI by EGCG and chlorogenic acid could lead to a slow, but complete, digestion of starch for improved glycemic response of starchy foods with potential health benefit.
C1 [Simsek, Meric; Ferruzzi, Mario G.; Hamaker, Bruce R.] Purdue Univ, Whistler Ctr Carbohydrate Res, W Lafayette, IN 47907 USA.
[Simsek, Meric; Ferruzzi, Mario G.; Hamaker, Bruce R.] Purdue Univ, Dept Food Sci, W Lafayette, IN 47907 USA.
[Quezada-Calvillo, Roberto] Univ Autonoma San Luis Potosi, Dept Chem, San Luis Potosi, Mexico.
[Quezada-Calvillo, Roberto; Nichols, Buford L.] USDA ARS, Childrens Nutr Res Ctr, Dept Pediat, Baylor Coll Med, Houston, TX 77030 USA.
RP Hamaker, BR (reprint author), Purdue Univ, Whistler Ctr Carbohydrate Res, Smith Hall, W Lafayette, IN 47907 USA.
EM hamakerb@purdue.edu
FU CONACYT, Mexico [80448, 173965]; Whistler Center for Carbohydrate
Research at Purdue University
FX This work was funded by CONACYT, Mexico, Projects 80448 and 173965. We
thank the Whistler Center for Carbohydrate Research at Purdue University
for its partial support of the project.
NR 54
TC 2
Z9 2
U1 10
U2 51
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
EI 1520-5118
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD APR 22
PY 2015
VL 63
IS 15
BP 3873
EP 3879
DI 10.1021/jf505425d
PG 7
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA CG9AC
UT WOS:000353605800007
PM 25816913
ER
PT J
AU Liu, F
Antoniou, J
Li, Y
Yi, J
Yokoyama, W
Ma, JG
Zhong, F
AF Liu, Fei
Antoniou, John
Li, Yue
Yi, Jiang
Yokoyama, Wallace
Ma, Jianguo
Zhong, Fang
TI Preparation of Gelatin Films Incorporated with Tea Polyphenol
Nanoparticles for Enhancing Controlled-Release Antioxidant Properties
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE gelatin film; tea polyphenols; cyclodextrin; chitosan nanoparticles;
oil; oxidation inhibition
ID CHITOSAN NANOPARTICLES; EDIBLE FILMS; NATURAL ANTIOXIDANTS;
ALPHA-TOCOPHEROL; ESSENTIAL OILS; FABRICATION; DELIVERY; EXTRACT;
ANTIBACTERIAL; STABILITY
AB Gelatin films incorporated with chitosan nanoparticles in various free/encapsulated tea polyphenol (TP) ratios were prepared in order to investigate the influence of different ratios on the physicochemical and antioxidant properties of films. The TP-containing nanoparticles were prepared by cross-linking chitosan hydrochloride (CSH) with sulfobutyl ether-beta-cyclodextrin sodium (SBE-beta-CD) at three different encapsulation efficiencies (EE; similar to 50%, similar to 80%, and similar to 100%) of TP. The stability of TP-loaded nanoparticles was maintained during the film drying process from the analysis of free TP content in the redissolved film solutions. Composite films showed no significant difference in visual aspects, while the light transmittance (250-550 nm) was decreased with incorporation of TP. Nanoparticles appeared to be homogeneously dispersed within the film matrix by microstructure analysis (SEM and AFM). TP-loaded films had ferric reducing and DPPH radical scavenging power that corresponded to the EEs. Sunflower oil packaged in bags made of gelatin films embedded with nanoparticles of 80% EE showed the best oxidation inhibitory effect, followed by 100% EE, 50% EE, and free TP, over 6 weeks of storage. However, when the gelatin film was placed over the headspace and was not in contact with the oil, the free TP showed the best effect. The results indicate that sustained release of TP in the contacting surface can ensure the protective effects, which vary with free/encapsulated mass ratios, thus improving antioxidant activities instead of increasing the dosage.
C1 [Liu, Fei; Antoniou, John; Li, Yue; Yi, Jiang; Ma, Jianguo; Zhong, Fang] Jiangnan Univ, Sch Food Sci & Technol, Minist Educ, Key Lab Food Colloids & Biotechnol, Wuxi 214122, Peoples R China.
[Yokoyama, Wallace] USDA ARS, Western Reg Res Ctr, Albany, CA 94710 USA.
RP Zhong, F (reprint author), Jiangnan Univ, Sch Food Sci & Technol, Minist Educ, Key Lab Food Colloids & Biotechnol, Wuxi 214122, Peoples R China.
EM fzhong@jiangnan.edu.cn
FU National 863 Program [2011BAD23B02, 2013AA102207]; National Natural
Science Foundation of China [31171686, 31401532]; Natural Science
Foundation of Jiangsu Province [BK2012556]; 111 project [B07029];
[PCSIRT0627]
FX This work was financially supported by National 863 Program
2011BAD23B02, 2013AA102207, National Natural Science Foundation of China
31171686, 31401532, the Natural Science Foundation of Jiangsu Province
BK2012556, 111 project-B07029 and PCSIRT0627.
NR 40
TC 13
Z9 13
U1 7
U2 92
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
EI 1520-5118
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD APR 22
PY 2015
VL 63
IS 15
BP 3987
EP 3995
DI 10.1021/acs.jafc.5b00003
PG 9
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA CG9AC
UT WOS:000353605800019
PM 25826241
ER
PT J
AU Khoury, CK
Heider, B
Castaneda-Alvarez, NP
Achicanoy, HA
Sosa, CC
Miller, RE
Scotland, RW
Wood, JRI
Rossel, G
Eserman, LA
Jarret, RL
Yencho, GC
Bernau, V
Juarez, H
Sotelo, S
de Haan, S
Struik, PC
AF Khoury, Colin K.
Heider, Bettina
Castaneda-Alvarez, Nora P.
Achicanoy, Harold A.
Sosa, Chrystian C.
Miller, Richard E.
Scotland, Robert W.
Wood, John R. I.
Rossel, Genoveva
Eserman, Lauren A.
Jarret, Robert L.
Yencho, G. C.
Bernau, Vivian
Juarez, Henry
Sotelo, Steven
de Haan, Stef
Struik, Paul C.
TI Distributions, ex situ conservation priorities, and genetic resource
potential of crop wild relatives of sweetpotato [Ipomoea batatas (L.)
Lam., I. series Batatas]
SO FRONTIERS IN PLANT SCIENCE
LA English
DT Article
DE crop diversity; crop improvement; crop wild relatives; food security;
gap analysis; plant genetic resources
ID SPECIES DISTRIBUTION MODELS; PHYLOGENETIC-RELATIONSHIPS; BETA-CAROTENE;
CONVOLVULACEAE; SEQUENCES; DIVERSITY; EVOLUTION; BIAS; CHALLENGES;
TOLERANCE
AB Crop wild relatives of sweetpotato [Ipomoea batatas (L.) Lam., I. series Batatas] have the potential to contribute to breeding objectives for this important root crop. Uncertainty in regard to species boundaries and their phylogenetic relationships, the limited availability of germplasm with which to perform crosses, and the difficulty of introgression of genes from wild species has constrained their utilization. Here, we compile geographic occurrence data on relevant sweetpotato wild relatives and produce potential distribution models for the species. We then assess the comprehensiveness of ex situ germplasm collections, contextualize these results with research and breeding priorities, and use ecogeographic information to identify species with the potential to contribute desirable agronomic traits. The fourteen species that are considered the closest wild relatives of sweetpotato generally occur from the central United States to Argentina, with richness concentrated in Mesoamerica and in the extreme Southeastern United States. Currently designated species differ among themselves and in comparison to the crop in their adaptations to temperature, precipitation, and edaphic characteristics and most species also show considerable intraspecific variation. With 79% of species identified as high priority for further collecting, we find that these crop genetic resources are highly under-represented in ex situ conservation systems and thus their availability to breeders and researchers is inadequate. We prioritize taxa and specific geographic locations for further collecting in order to improve the completeness of germplasm collections. In concert with enhanced conservation of sweetpotato wild relatives, further taxonomic research, characterization and evaluation of germplasm, and improving the techniques to overcome barriers to introgression with wild species are needed in order to mobilize these genetic resources for crop breeding.
C1 [Khoury, Colin K.; Castaneda-Alvarez, Nora P.; Achicanoy, Harold A.; Sosa, Chrystian C.; Bernau, Vivian; Sotelo, Steven; de Haan, Stef] Ctr Int Agr Trop, Cali, Colombia.
[Khoury, Colin K.; Struik, Paul C.] Wageningen Univ, Ctr Crop Syst Anal, NL-6700 AP Wageningen, Netherlands.
[Heider, Bettina; Rossel, Genoveva; Juarez, Henry; de Haan, Stef] Int Potato Ctr, CGIAR Res Program Roots Tubers & Bananas, Lima, Peru.
[Castaneda-Alvarez, Nora P.] Univ Birmingham, Sch Biosci, Birmingham, W Midlands, England.
[Miller, Richard E.] SE Louisiana Univ, Dept Biol Sci, Hammond, LA 70402 USA.
[Scotland, Robert W.; Wood, John R. I.] Univ Oxford, Dept Plant Sci, Oxford, England.
[Eserman, Lauren A.] Univ Georgia, Dept Plant Biol, Athens, GA 30602 USA.
[Jarret, Robert L.] USDA ARS, Plant Genet Resources Conservat Unit, Griffin, GA USA.
[Yencho, G. C.] N Carolina State Univ, Dept Hort Sci, Raleigh, NC 27695 USA.
[Bernau, Vivian] Ohio State Univ, Dept Hort & Crop Sci, Columbus, OH 43210 USA.
RP Khoury, CK (reprint author), Ctr Int Agr Trop, Km 17,Recta Cali Palmira,Apartado Aereo 6713, Cali, Colombia.
EM c.khoury@cgiar.org
RI Castaneda-Alvarez, Nora/I-8026-2015; Sosa, Chrystian Camilo/I-6787-2016;
OI Castaneda-Alvarez, Nora/0000-0003-1827-4782; Sosa, Chrystian
Camilo/0000-0002-3734-3248; Khoury, Colin K./0000-0001-7893-5744;
Juarez, Henry/0000-0002-8535-7089; Sotelo, Steven/0000-0002-9621-1456
FU Government of Norway; CGIAR Research Program on Roots, Tubers, and
Bananas (RTB)
FX We dedicate this research to the late Dan F. Austin, who provided the
foundation for our understanding of the taxonomy of Ipomoea series
Batatas. We thank the taxonomic and geographic data providers whose
contributions made this analysis possible, and S. Calderon, A.
Castaneda, O. Rivera, and I. Vanegas for gathering and organizing
occurrence data. Data gathering and analyses were undertaken as part of
the initiative "Adapting Agriculture to Climate Change: Collecting,
Protecting and Preparing Crop Wild Relatives" which is supported by the
Government of Norway. The project is managed by the Global Crop
Diversity Trust with the Millennium Seed Bank of the Royal Botanic
Gardens, Kew, UK, and implemented in partnership with national and
international genebanks and plant breeding institutes around the world.
For further information, see Dempewoll et al. (2014), and
http://www.cwrdiversity.org/. Support from the CGIAR Research Program on
Roots, Tubers, and Bananas (RTB) is kindly acknowledged.
NR 107
TC 4
Z9 5
U1 0
U2 15
PU FRONTIERS RESEARCH FOUNDATION
PI LAUSANNE
PA PO BOX 110, LAUSANNE, 1015, SWITZERLAND
SN 1664-462X
J9 FRONT PLANT SCI
JI Front. Plant Sci.
PD APR 21
PY 2015
VL 6
AR 251
DI 10.3389/fpls.2015.00251
PG 14
WC Plant Sciences
SC Plant Sciences
GA CL3YT
UT WOS:000356889200001
PM 25954286
ER
PT J
AU van der Ent, A
Baker, AJM
Reeves, RD
Chaney, RL
Anderson, CWN
Meech, JA
Erskine, PD
Simonnot, MO
Vaughan, J
Morel, JL
Echevarria, G
Fogliani, B
Qiu, RL
Mulligan, DR
AF van der Ent, Antony
Baker, Alan J. M.
Reeves, Roger D.
Chaney, Rufus L.
Anderson, Christopher W. N.
Meech, John A.
Erskine, Peter D.
Simonnot, Marie-Odile
Vaughan, James
Morel, Jean Louis
Echevarria, Guillaume
Fogliani, Bruno
Qiu Rongliang
Mulligan, David R.
TI Agromining: Farming for Metals in the Future?
SO ENVIRONMENTAL SCIENCE & TECHNOLOGY
LA English
DT Article
ID NEW-CALEDONIA; COMMERCIAL PHYTOEXTRACTION; HYPERACCUMULATING PLANTS;
NICKEL LATERITES; ALYSSUM-MURALE; BIOMASS; PHYTOREMEDIATION;
ACCUMULATION; SOILS; ORE
AB Phytomining technology employs hyperaccumulator plants to take up metal in harvestable plant biomass. Harvesting, drying and incineration of the biomass generates a high-grade bio-ore. We propose that "agromining" (a variant of phytomining) could provide local communities with an alternative type of agriculture on degraded lands; farming not for food crops, but for metals such as nickel (Ni). However, two decades after its inception and numerous successful experiments, commercial phytomining has not yet become a reality. To build the case for the minerals industry, a large-scale demonstration is needed to identify operational risks and provide "real-life" evidence for profitability.
C1 [van der Ent, Antony; Baker, Alan J. M.; Erskine, Peter D.; Mulligan, David R.] Univ Queensland, Sustainable Minerals Inst, Ctr Mined Land Rehabil, Brisbane, Qld 4072, Australia.
[Baker, Alan J. M.; Reeves, Roger D.] Univ Melbourne, Sch Biosci, Parkville, Vic 3010, Australia.
[Chaney, Rufus L.] ARS, USDA, Crop Syst & Global Change Lab, Beltsville, MD 20705 USA.
[Anderson, Christopher W. N.] Massey Univ, Inst Agr & Environm, Palmerston North 4474, New Zealand.
[Meech, John A.] Univ British Columbia, NBK Inst Min Engn, Vancouver, BC V6T 1Z4, Canada.
[Simonnot, Marie-Odile] Univ Lorraine, CNRS, UMR 7274, Lab React & Genie Proc, F-54000 Nancy, France.
[Vaughan, James] Univ Queensland, Sch Chem Engn, Brisbane, Qld 4072, Australia.
[van der Ent, Antony; Baker, Alan J. M.; Morel, Jean Louis; Echevarria, Guillaume] Univ Lorraine, INRA, UMR 1120, Lab Sols & Environm, F-54000 Nancy, France.
[Fogliani, Bruno] Inst Agron Neo Caledonien IAC, Divers Biol & Fonct Ecosyst Terrestres, Noumea 98851, New Caledonia.
[Qiu Rongliang] Sun Yat Sen Zhongshan Univ, Sch Environm Sci & Engn, Guangzhou, Guangdong, Peoples R China.
RP van der Ent, A (reprint author), Univ Queensland, Sustainable Minerals Inst, Ctr Mined Land Rehabil, Brisbane, Qld 4072, Australia.
EM a.vanderent@uq.edu.au
RI Echevarria, Guillaume/B-3680-2012; Vaughan, James/B-5619-2016; van der
Ent, Antony/A-7486-2015; QIU, Rong-Liang/F-9450-2012;
OI Echevarria, Guillaume/0000-0003-2124-1447; Vaughan,
James/0000-0002-9861-9500; van der Ent, Antony/0000-0003-0922-5065;
Simonnot, Marie-Odile/0000-0002-5670-3405; Morel, Jean
Louis/0000-0002-5720-1482
NR 51
TC 24
Z9 24
U1 8
U2 90
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0013-936X
EI 1520-5851
J9 ENVIRON SCI TECHNOL
JI Environ. Sci. Technol.
PD APR 21
PY 2015
VL 49
IS 8
BP 4773
EP 4780
DI 10.1021/es506031u
PG 8
WC Engineering, Environmental; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA CG9BV
UT WOS:000353610300001
PM 25700109
ER
PT J
AU Smith, MC
Gomulkiewicz, R
Mack, RN
AF Smith, Melissa C.
Gomulkiewicz, Richard
Mack, Richard N.
TI Potential Role of Masting by Introduced Bamboos in Deer Mice (Peromyscus
maniculatus) Population Irruptions Holds Public Health Consequences
SO PLOS ONE
LA English
DT Article
ID SIN-NOMBRE-VIRUS; FEEDING-PREFERENCE EXPERIMENTS; BIOLOGICAL-CONTROL
AGENTS; MOUSE-POPULATIONS; BORRELIA-BURGDORFERI; IXODES-PACIFICUS; SEED
PRODUCTION; UNITED-STATES; EXTRA FOOD; HANTAVIRUS
AB We hypothesized that the ongoing naturalization of frost/shade tolerant Asian bamboos in North America could cause environmental consequences involving introduced bamboos, native rodents and ultimately humans. More specifically, we asked whether the eventual masting by an abundant leptomorphic ("running") bamboo within Pacific Northwest coniferous forests could produce a temporary surfeit of food capable of driving a population irruption of a common native seed predator, the deer mouse (Peromyscus maniculatus), a hantavirus carrier. Single-choice and cafeteria-style feeding trials were conducted for deer mice with seeds of two bamboo species (Bambusa distegia and Yushania brevipaniculata), wheat, Pinus ponderosa, and native mixed diets compared to rodent laboratory feed. Adult deer mice consumed bamboo seeds as readily as they consumed native seeds. In the cafeteria-style feeding trials, Y. brevipaniculata seeds were consumed at the same rate as native seeds but more frequently than wheat seeds or rodent laboratory feed. Females produced a median litter of 4 pups on a bamboo diet. Given the ability of deer mice to reproduce frequently whenever food is abundant, we employed our feeding trial results in a modified Rosenzweig-MacArthur consumer-resource model to project the population-level response of deer mice to a suddenly available/rapidly depleted supply of bamboo seeds. The simulations predict rodent population irruptions and declines similar to reported cycles involving Asian and South American rodents but unprecedented in deer mice. Following depletion of a mast seed supply, the incidence of Sin Nombre Virus (SNV) transmission to humans could subsequently rise with dispersal of the peridomestic deer mice into nearby human settlements seeking food.
C1 [Smith, Melissa C.] USDA ARS, Invas Plant Res Lab, Ft Lauderdale, FL 33314 USA.
[Gomulkiewicz, Richard; Mack, Richard N.] Washington State Univ, Sch Biol Sci, Pullman, WA 99164 USA.
RP Smith, MC (reprint author), USDA ARS, Invas Plant Res Lab, 3225 Coll Ave, Ft Lauderdale, FL 33314 USA.
EM Melissa.Smith@ars.usda.gov
FU USDA-APHIS contract [1081001205CA]; National Science Foundation [DMS
0540524, DEB 1354264]
FX This research was supported by USDA-APHIS contract #1081001205CA to
Washington State University and greatly facilitated by A.V. Tasker. RG
was supported in part by National Science Foundation grants DMS 0540524
and DEB 1354264. The funders had no role in study design, data
collection and analysis, decision to publish, or preparation of the
manuscript.
NR 98
TC 1
Z9 1
U1 5
U2 15
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 21
PY 2015
VL 10
IS 4
AR UNSP e0124419
DI 10.1371/journal.pone.0124419
PG 17
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CG3XJ
UT WOS:000353212600068
PM 25898267
ER
PT J
AU Nosavanh, L
Yu, DH
Jaehnig, EJ
Tong, Q
Shen, LL
Chen, MH
AF Nosavanh, LaGina
Yu, Da-Hai
Jaehnig, Eric J.
Tong, Qiang
Shen, Lanlan
Chen, Miao-Hsueh
TI Cell-autonomous activation of Hedgehog signaling inhibits brown adipose
tissue development
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA
LA English
DT Article
DE Hedgehog signaling; brown adipose tissue; cell fate
ID PRIMARY CILIUM; ADULT HUMANS; MOUSE MODEL; COUP-TFII; ADIPOGENESIS;
SUPPRESSOR; EXPRESSION; PATHWAY; LINEAGE; OBESITY
AB Although recent studies have shown that brown adipose tissue (BAT) arises from progenitor cells that also give rise to skeletal muscle, the developmental signals that control the formation of BAT remain largely unknown. Here, we show that brown preadi-pocytes possess primary cilia and can respond to Hedgehog (Hh) signaling. Furthermore, cell-autonomous activation of Hh signaling blocks early brown-preadipocyte differentiation, inhibits BAT formation in vivo, and results in replacement of neck BAT with poorly differentiated skeletal muscle. Finally, we show that Hh signaling inhibits BAT formation partially through up-regulation of chicken ovalbumin upstream promoter transcription factor II (COUP-TFII). Taken together, our studies uncover a previously unidentified role for Hh as an inhibitor of BAT development.
C1 [Nosavanh, LaGina; Yu, Da-Hai; Tong, Qiang; Shen, Lanlan; Chen, Miao-Hsueh] USDA ARS, Baylor Coll Med, Childrens Nutr Res Ctr, Dept Pediat, Houston, TX 77030 USA.
[Jaehnig, Eric J.] Univ Calif San Diego, Ludwig Inst Canc Res, Dept Cellular & Mol Med, Sch Med, La Jolla, CA 92093 USA.
RP Chen, MH (reprint author), USDA ARS, Baylor Coll Med, Childrens Nutr Res Ctr, Dept Pediat, Houston, TX 77030 USA.
EM miaohsuc@bcm.edu
FU US Department of Agriculture/Agricultural Research Service
[6250-51000-054]
FX We thank Drs. Evan Rosen, Inder Verma, Bob Weinberg, David Root, Didier
Trono, Ronald Evans, Matthew Scott, Andrew McMahon, Philippe Soriano,
and Pao-Tien Chuang for reagents and animals; Alexis Canlas and Chitra
Jeyasankar for technical assistance; and Dr. Ray-Bing Chen for helpful
discussions regarding the statistical analyses. This work was supported
by a grant (6250-51000-054) from the US Department of
Agriculture/Agricultural Research Service (to M.-H.C.).
NR 31
TC 0
Z9 0
U1 1
U2 9
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD APR 21
PY 2015
VL 112
IS 16
BP 5069
EP 5074
DI 10.1073/pnas.1420978112
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CG4FJ
UT WOS:000353239100065
PM 25848030
ER
PT J
AU Brown, PT
Li, WH
Cordero, EC
Mauget, SA
AF Brown, Patrick T.
Li, Wenhong
Cordero, Eugene C.
Mauget, Steven A.
TI Comparing the model-simulated global warming signal to observations
using empirical estimates of unforced noise
SO SCIENTIFIC REPORTS
LA English
DT Article
ID NONSTATIONARY TIME-SERIES; CLIMATE MODEL; 20TH-CENTURY TEMPERATURE;
HEMISPHERIC TEMPERATURES; SURFACE TEMPERATURES; VARIABILITY; HIATUS;
RECONSTRUCTIONS; PACIFIC; TREND
AB The comparison of observed global mean surface air temperature (GMT) change to the mean change simulated by climate models has received much public and scientific attention. For a given global warming signal produced by a climate model ensemble, there exists an envelope of GMT values representing the range of possible unforced states of the climate system (the Envelope of Unforced Noise; EUN). Typically, the EUN is derived from climate models themselves, but climate models might not accurately simulate the correct characteristics of unforced GMT variability. Here, we simulate a new, empirical, EUN that is based on instrumental and reconstructed surface temperature records. We compare the forced GMT signal produced by climate models to observations while noting the range of GMT values provided by the empirical EUN. We find that the empirical EUN is wide enough so that the interdecadal variability in the rate of global warming over the 20th century does not necessarily require corresponding variability in the rate-of-increase of the forced signal. The empirical EUN also indicates that the reduced GMT warming over the past decade or so is still consistent with a middle emission scenario's forced signal, but is likely inconsistent with the steepest emission scenario's forced signal.
C1 [Brown, Patrick T.; Li, Wenhong] Duke Univ, Nicholas Sch Environm, Earth & Ocean Sci, Durham, NC 27708 USA.
[Cordero, Eugene C.] San Jose State Univ, Dept Meteorol & Climate Sci, San Jose, CA 95192 USA.
[Mauget, Steven A.] USDA ARS, Lubbock, TX 79415 USA.
RP Brown, PT (reprint author), Duke Univ, Nicholas Sch Environm, Earth & Ocean Sci, Durham, NC 27708 USA.
EM Patrick.Brown@duke.edu
FU NSF's Faculty Early Career Development (CAREER) Program [ATM-0449996];
NSF [AGS-1147608]; NIH [NIH-1R21AG044294-01A1]
FX We acknowledge the World Climate Research Programme's Working Group on
Coupled Modelling, which is responsible for CMIP, and we thank the
climate modeling groups for producing and making available their model
output. For CMIP the U.S. Department of Energy's Program for Climate
Model Diagnosis and Intercomparison provides coordinating support and
led development of software infrastructure in partnership with the
Global Organization for Earth System Science Portals. This work was
partially supported in part by NSF's Faculty Early Career Development
(CAREER) Program, Grant ATM-0449996, partially supported by NSF grant
AGS-1147608 and partially supported by NIH grant NIH-1R21AG044294-01A1.
NR 63
TC 4
Z9 4
U1 1
U2 17
PU NATURE PUBLISHING GROUP
PI LONDON
PA MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
SN 2045-2322
J9 SCI REP-UK
JI Sci Rep
PD APR 21
PY 2015
VL 5
AR 9957
DI 10.1038/srep09957
PG 9
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CG4TU
UT WOS:000353280600003
PM 25898351
ER
PT J
AU Dickey, AM
Kumar, V
Hoddle, MS
Funderburk, JE
Morgan, JK
Jara-Cavieres, A
Shatters, RGJ
Osborne, LS
McKenzie, CL
AF Dickey, Aaron M.
Kumar, Vivek
Hoddle, Mark S.
Funderburk, Joe E.
Morgan, J. Kent
Jara-Cavieres, Antonella
Shatters, Robert G. Jr.
Osborne, Lance S.
McKenzie, Cindy L.
TI The Scirtothrips dorsalis Species Complex: Endemism and Invasion in a
Global Pest
SO PLOS ONE
LA English
DT Article
ID POLYMERASE-CHAIN-REACTION; MITOCHONDRIAL-DNA; POPULATION-GROWTH;
THYSANOPTERA THRIPIDAE; MOLECULAR CHARACTERIZATION; MISMATCH
DISTRIBUTION; STATISTICAL TESTS; SPOT VIRUS; IDENTIFICATION;
DELIMITATION
AB Invasive arthropods pose unique management challenges in various environments, the first of which is correct identification. This apparently mundane task is particularly difficult if multiple species are morphologically indistinguishable but accurate identification can be determined with DNA barcoding provided an adequate reference set is available. Scirtothrips dorsalis is a highly polyphagous plant pest with a rapidly expanding global distribution and this species, as currently recognized, may be comprised of cryptic species. Here we report the development of a comprehensive DNA barcode library for S. dorsalis and seven nuclear markers via next-generation sequencing for identification use within the complex. We also report the delimitation of nine cryptic species and two morphologically distinguishable species comprising the S. dorsalis species complex using histogram analysis of DNA barcodes, Bayesian phylogenetics, and the multi-species coalescent. One member of the complex, here designated the South Asia 1 cryptic species, is highly invasive, polyphagous, and likely the species implicated in tospovirus transmission. Two other species, South Asia 2, and East Asia 1 are also highly polyphagous and appear to be at an earlier stage of global invasion. The remaining members of the complex are regionally endemic, varying in their pest status and degree of polyphagy. In addition to patterns of invasion and endemism, our results provide a framework both for identifying members of the complex based on their DNA barcode, and for future species delimiting efforts.
C1 [Dickey, Aaron M.; Kumar, Vivek; Osborne, Lance S.] Univ Florida, Mid Florida Res & Educ Ctr, Apopka, FL USA.
[Dickey, Aaron M.; Kumar, Vivek; Morgan, J. Kent; Jara-Cavieres, Antonella; Shatters, Robert G. Jr.; McKenzie, Cindy L.] US Hort Res Lab, Ft Pierce, FL 34945 USA.
[Hoddle, Mark S.] Univ Calif Riverside, Dept Entomol, Riverside, CA 92521 USA.
[Hoddle, Mark S.] Univ Calif Riverside, Ctr Invas Species Res, Riverside, CA 92521 USA.
[Funderburk, Joe E.] Univ Florida, North Florida Res & Educ Ctr, Quincy, FL USA.
[Morgan, J. Kent; Shatters, Robert G. Jr.; McKenzie, Cindy L.] USDA ARS, Ft Pierce, FL USA.
[Jara-Cavieres, Antonella] Univ Florida, Indian River Res & Educ Ctr, Ft Pierce, FL USA.
RP McKenzie, CL (reprint author), US Hort Res Lab, Ft Pierce, FL 34945 USA.
EM Cindy.McKenzie@ars.usda.gov
FU Floriculture and Nursery Research Initiative [402626]; USDA
FX This research was partially funded by the Floriculture and Nursery
Research Initiative, http://
www.ars.usda.gov/research/projects/projects.htm?ACCN_NO=402626.
Additional funding was provided internally by the USDA. The funders had
no role in study design, data collection and analysis, decision to
publish, or preparation of the manuscript.
NR 86
TC 7
Z9 8
U1 1
U2 18
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 20
PY 2015
VL 10
IS 4
AR e0123747
DI 10.1371/journal.pone.0123747
PG 22
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CG3XA
UT WOS:000353211700052
PM 25893251
ER
PT J
AU Rogovskyy, AS
Casselli, T
Tourand, Y
Jones, CR
Owen, JP
Mason, KL
Scoles, GA
Bankhead, T
AF Rogovskyy, Artem S.
Casselli, Timothy
Tourand, Yvonne
Jones, Cami R.
Owen, Jeb P.
Mason, Kathleen L.
Scoles, Glen A.
Bankhead, Troy
TI Evaluation of the Importance of VlsE Antigenic Variation for the
Enzootic Cycle of Borrelia burgdorferi
SO PLOS ONE
LA English
DT Article
ID LYME-DISEASE SPIROCHETE; WHITE-FOOTED MICE; IXODES-SCAPULARIS TICKS;
OUTER-SURFACE PROTEIN; PEROMYSCUS-LEUCOPUS; GENETIC-VARIATION; MAMMALIAN
HOST; SENSU-STRICTO; RESERVOIR COMPETENCE; PROTECTIVE IMMUNITY
AB Efficient acquisition and transmission of Borrelia burgdorferi by the tick vector, and the ability to persistently infect both vector and host, are important elements for the life cycle of the Lyme disease pathogen. Previous work has provided strong evidence implicating the significance of the vls locus for B. burgdorferi persistence. However, studies involving vls mutant clones have thus far only utilized in vitro-grown or host-adapted spirochetes and laboratory strains of mice. Additionally, the effects of vls mutation on tick acquisition and transmission has not yet been tested. Thus, the importance of VlsE antigenic variation for persistent infection of the natural reservoir host, and for the B. burgdorferi enzootic life cycle in general, has not been examined to date. In the current work, Ixodes scapularis and Peromyscus maniculatus were infected with different vls mutant clones to study the importance of the vls locus for the enzootic cycle of the Lyme disease pathogen. The findings highlight the significance of the vls system for long-term infection of the natural reservoir host, and show that VlsE antigenic variability is advantageous for efficient tick acquisition of B. burgdorferi from the mammalian reservoir. The data also indicate that the adaptation state of infecting spirochetes influences B. burgdorferi avoidance from host antibodies, which may be in part due to its respective VlsE expression levels. Overall, the current findings provide the most direct evidence on the importance of VlsE for the enzootic cycle of Lyme disease spirochetes, and underscore the significance of VlsE antigenic variation for maintaining B. burgdorferi in nature.
C1 [Rogovskyy, Artem S.; Casselli, Timothy; Tourand, Yvonne; Bankhead, Troy] Washington State Univ, Dept Vet Microbiol & Pathol, Pullman, WA 99164 USA.
[Jones, Cami R.; Owen, Jeb P.] Washington State Univ, Dept Entomol, Pullman, WA 99164 USA.
[Mason, Kathleen L.; Scoles, Glen A.] Washington State Univ, USDA ARS, Anim Dis Res Unit, Pullman, WA 99164 USA.
[Bankhead, Troy] Washington State Univ, Paul G Allen Sch Global Anim Hlth, Pullman, WA 99164 USA.
RP Bankhead, T (reprint author), Washington State Univ, Dept Vet Microbiol & Pathol, Pullman, WA 99164 USA.
EM tbankhead@vetmed.wsu.edu
OI Bankhead, Troy/0000-0002-4336-0298
FU National Institute of Allergy and Infectious Diseases, National
Institutes of Health [1R01AI108704]
FX This work was funded by the National Institute of Allergy and Infectious
Diseases, National Institutes of Health, grant number 1R01AI108704 to TB
(http://www.niaid.nih.gov/Pages/default.aspx). The funders had no role
in study design, data collection and analysis, decision to publish, or
preparation of the manuscript.
NR 80
TC 1
Z9 1
U1 3
U2 15
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 20
PY 2015
VL 10
IS 4
AR e0124268
DI 10.1371/journal.pone.0124268
PG 21
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CG3XA
UT WOS:000353211700083
PM 25893989
ER
PT J
AU Shi, Z
Liu, SM
Noe, J
Arelli, P
Meksem, K
Li, ZL
AF Shi, Zi
Liu, Shiming
Noe, James
Arelli, Prakash
Meksem, Khalid
Li, Zenglu
TI SNP identification and marker assay development for high-throughput
selection of soybean cyst nematode resistance
SO BMC GENOMICS
LA English
DT Article
DE Soybean cyst nematode; Resistance; SNP; KASP marker assays; Marker
assisted selection
ID LOCI UNDERLYING RESISTANCE; HETERODERA-GLYCINES; RFLP MARKERS; COPY
NUMBER; RHG4 LOCI; REGISTRATION; GENE; POPULATIONS; PEKING; POLYMORPHISM
AB Background: Soybean cyst nematode (SCN) is the most economically devastating pathogen of soybean. Two resistance loci, Rhg1 and Rhg4 primarily contribute resistance to SCN race 3 in soybean. Peking and PI 88788 are the two major sources of SCN resistance with Peking requiring both Rhg1 and Rhg4 alleles and PI 88788 only the Rhg1 allele. Although simple sequence repeat (SSR) markers have been reported for both loci, they are linked markers and limited to be applied in breeding programs due to accuracy, throughput and cost of detection methods. The objectives of this study were to develop robust functional marker assays for high-throughput selection of SCN resistance and to differentiate the sources of resistance.
Results: Based on the genomic DNA sequences of 27 soybean lines with known SCN phenotypes, we have developed Kompetitive Allele Specific PCR (KASP) assays for two Single nucleotide polymorphisms (SNPs) from Glyma08g11490 for the selection of the Rhg4 resistance allele. Moreover, the genomic DNA of Glyma18g02590 at the Rhg1 locus from 11 soybean lines and cDNA of Forrest, Essex, Williams 82 and PI 88788 were fully sequenced. Pairwise sequence alignment revealed seven SNPs/insertion/deletions (InDels), five in the 6th exon and two in the last exon. Using the same 27 soybean lines, we identified one SNP that can be used to select the Rhg1 resistance allele and another SNP that can be employed to differentiate Peking and PI 88788-type resistance. These SNP markers have been validated and a strong correlation was observed between the SNP genotypes and reactions to SCN race 3 using a panel of 153 soybean lines, as well as a bi-parental population, F-5-derived recombinant inbred lines (RILs) from G00-3213 x LG04-6000.
Conclusions: Three functional SNP markers (two for Rhg1 locus and one for Rhg4 locus) were identified that could provide genotype information for the selection of SCN resistance and differentiate Peking from PI 88788 source for most germplasm lines. The robust KASP SNP marker assays were developed. In most contexts, use of one or two of these markers is sufficient for high-throughput marker-assisted selection of plants that will exhibit SCN resistance.
C1 [Shi, Zi; Li, Zenglu] Univ Georgia, Ctr Appl Genet Technol, Athens, GA 30602 USA.
[Shi, Zi; Li, Zenglu] Univ Georgia, Dept Crop & Soil Sci, Athens, GA 30602 USA.
[Liu, Shiming; Meksem, Khalid] So Illinois Univ, Dept Plant Soil & Agr Syst, Carbondale, IL 62901 USA.
[Noe, James] Univ Georgia, Dept Plant Pathol, Athens, GA 30602 USA.
[Arelli, Prakash] USDA ARS, SEA, Jackson, TN 38301 USA.
RP Li, ZL (reprint author), Univ Georgia, Ctr Appl Genet Technol, Athens, GA 30602 USA.
EM zli@uga.edu
FU United Soybean Board; University of Georgia Research Foundation;
Illinois Soybean Association; Tennessee Soybean Promotion Board
FX This research was supported by the funding from the United Soybean Board
and the University of Georgia Research Foundation to ZL, ZS, and JN; by
the funding from the United Soybean Board and the Illinois Soybean
Association to KM and SL; and by the funding from the United Soybean
Board and the Tennessee Soybean Promotion Board to PA. The funding
agencies had no role in study design, data collection and analysis,
interpretation of data, decision to publish, or preparation of the
manuscript.
NR 52
TC 9
Z9 13
U1 5
U2 31
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2164
J9 BMC GENOMICS
JI BMC Genomics
PD APR 18
PY 2015
VL 16
AR 314
DI 10.1186/s12864-015-1531-3
PG 12
WC Biotechnology & Applied Microbiology; Genetics & Heredity
SC Biotechnology & Applied Microbiology; Genetics & Heredity
GA CG4KZ
UT WOS:000353255400002
PM 25903750
ER
PT J
AU Mitra, A
Luo, J
He, YH
Gu, YL
Zhang, HM
Zhao, KJ
Cui, KR
Song, JZ
AF Mitra, Apratim
Luo, Juan
He, Yanghua
Gu, Yulan
Zhang, Huanmin
Zhao, Keji
Cui, Kairong
Song, Jiuzhou
TI Histone modifications induced by MDV infection at early cytolytic and
latency phases
SO BMC GENOMICS
LA English
DT Article
ID MAREKS-DISEASE VIRUS; TUMOR-SUPPRESSOR GENE; UBIQUITIN-MEDIATED
PROTEOLYSIS; CELL-PROLIFERATION; COLORECTAL-CANCER; SIGNALING PATHWAYS;
NERVOUS-SYSTEM; HOST RESPONSES; EXPRESSION; KINASE
AB Background: Marek's disease (MD) is a highly contagious, lymphomatous disease of chickens induced by a herpesvirus, Marek's disease virus (MDV) that is the cause of major annual losses to the poultry industry. MD pathogenesis involves multiple stages including an early cytolytic phase and latency, and transitions between these stages are governed by several host and environmental factors. The success of vaccination strategies has led to the increased virulence of MDV and selective breeding of naturally resistant chickens is seen as a viable alternative. While multiple gene expression studies have been performed in resistant and susceptible populations, little is known about the epigenetic effects of infection.
Results: In this study, we investigated temporal chromatin signatures induced by MDV by analyzing early cytolytic and latent phases of infection in the bursa of Fabricius of MD-resistant and -susceptible birds. Major global variations in chromatin marks were observed at different stages of MD in the two lines. Differential H3K27me3 marks were associated with immune-related pathways, such as MAP kinase signaling, focal adhesion and neuroactive ligand receptor interaction, and suggested varying degrees of silencing in response to infection. Immune-related microRNAs, e.g. gga-miR-155 and gga-miR-10b, bore chromatin signatures, which suggested their contribution to MD-susceptibility. Finally, several members of the focal adhesion pathway, e.g. THBS4 and ITGA1, showed marked concordance between gene expression and chromatin marks indicating putative epigenetic regulation in response to MDV infection.
Conclusion: Our comprehensive analysis of chromatin signatures, therefore, revealed further clues about the epigenetic effects of MDV infection although further studies are necessary to elucidate the functional implications of the observed variations in histone modifications.
C1 [Mitra, Apratim; Luo, Juan; He, Yanghua; Song, Jiuzhou] Univ Maryland, Dept Anim & Avian Sci, College Pk, MD 20742 USA.
[Zhang, Huanmin] USDA ARS, Avian Dis & Oncol Lab, E Lansing, MI 48823 USA.
[Zhao, Keji; Cui, Kairong] NHLBI, Syst Biol Ctr, NIH, Bethesda, MD 20892 USA.
[Gu, Yulan] China Agr Univ, Coll Anim Sci, Dept Anim Breeding & Genet, Beijing 100193, Peoples R China.
RP Song, JZ (reprint author), Univ Maryland, Dept Anim & Avian Sci, College Pk, MD 20742 USA.
EM songj88@umd.edu
FU National Research Initiative Competitive Grant [USDA-NRI/NIFA
2008-35204-04660]; USDA National Institute of Food and Agriculture
[USDA-NRI/NIFA 2010-65205-20588]
FX The authors would like to thank Fei Zhan for assistance in RNA-Seq
analysis and Jose Carrillo and Ding Yi for helpful discussions. This
project was supported by National Research Initiative Competitive Grant
no. USDA-NRI/NIFA 2008-35204-04660 and USDA-NRI/NIFA 2010-65205-20588
from the USDA National Institute of Food and Agriculture.
NR 51
TC 0
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U1 0
U2 4
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2164
J9 BMC GENOMICS
JI BMC Genomics
PD APR 18
PY 2015
VL 16
AR 311
DI 10.1186/s12864-015-1492-6
PG 12
WC Biotechnology & Applied Microbiology; Genetics & Heredity
SC Biotechnology & Applied Microbiology; Genetics & Heredity
GA CG2LS
UT WOS:000353106800001
PM 25896894
ER
PT J
AU de Castro, EB
Ramos, FAM
Feres, RJF
Ochoa, R
AF de Castro, Elizeu B.
Ramos, Felipe A. M.
Feres, Reinaldo J. F.
Ochoa, Ronald
TI A new species of Tenuipalpus Donnadieu (Acari: Tenuipalpidae) from
Brazil, with ontogeny of chaetotaxy
SO SYSTEMATIC AND APPLIED ACAROLOGY
LA English
DT Article
ID AUSTRALIAN SEDGES CYPERACEAE; TROMBIDIFORMES TENUIPALPIDAE; PROSTIGMATA
TENUIPALPIDAE; NEW-ZEALAND; FLAT MITES; GENUS; PATTERNS
AB Tenuipalpus toropi sp. nov., is described from females, males, deutonymphs, protonymphs and larvae collected on Sapium glandulatum (Vell.) Pax (Euphorbiaceae) from the northwest of the State of Sao Paulo, Brazil. We include details of the ontogenetic changes in idiosomal and leg chaetotaxy for all stages.
C1 [de Castro, Elizeu B.] Univ Estadual Paulista UNESP, Programa Pos Grad Biol Anim, Sao Paulo, Brazil.
[Ramos, Felipe A. M.] Univ Estadual Paulista UNESP, Sao Paulo, Brazil.
[Feres, Reinaldo J. F.] Univ Estadual Paulista, Dept Zool & Bot, BR-15054000 Sao Paulo, Brazil.
[Feres, Reinaldo J. F.] CNPq Brazil, Brasilia, DF, Brazil.
[Ochoa, Ronald] ARS, SEL, USDA, BARC, Beltsville, MD 20705 USA.
RP de Castro, EB (reprint author), Univ Estadual Paulista UNESP, Programa Pos Grad Biol Anim, Campus Sao Jose do Rio Preto, Sao Paulo, Brazil.
EM elizeu_unesp@yahoo.com.br
RI Castro, Elizeu/A-9915-2015
OI Castro, Elizeu/0000-0002-8056-6893
FU "Fundacao de Amparo a Pesquisa do Estado de Sao Paulo" (FAPESP)
[06/55725-6]; "Coordenacao de Aperfeicoamento de Pessoal de Nivel
Superior" (CAPES); "Conselho Nacional de Desenvolvimento Cientifico e
Tecnologico" (CNPq) [303435/2013-5]
FX We thank to Dr. Gregory Evans (APHIS-USDA) for the revision of the
manuscript. The new species described was collected with financial
support of the "Fundacao de Amparo a Pesquisa do Estado de Sao Paulo"
(FAPESP) (Proc. no. 06/55725-6). This work was supported by the
"Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior" (CAPES)
and "Conselho Nacional de Desenvolvimento Cientifico e Tecnologico"
(CNPq) (Proc. no 303435/2013-5), by fellowship and research grant to the
first and third authors, respectively. Mention of trade names or
commercial products in this publication does not imply recommendation or
endorsement by the USDA.
NR 22
TC 1
Z9 1
U1 0
U2 0
PU SYSTEMATIC & APPLIED ACAROLOGY SOC LONDON, NATURAL HISTORY MUSEUM
PI LONDON
PA DEPT ENTOMOLOGY, LONDON, SW7 5BD, ENGLAND
SN 1362-1971
J9 SYST APPL ACAROL-UK
JI Syst. Appl. Acarol.
PD APR 17
PY 2015
VL 20
IS 3
BP 339
EP 356
PG 18
WC Entomology
SC Entomology
GA CO2ZA
UT WOS:000359024500011
ER
PT J
AU O'Brien, AMP
Holler, D
Boison, SA
Milanesi, M
Bomba, L
Utsunomiya, YT
Carvalheiro, R
Neves, HHR
da Silva, MVB
VanTassell, CP
Sonstegard, TS
Meszaros, G
Ajmone-Marsan, P
Garcia, F
Solkner, J
AF O'Brien, Ana M. Perez
Hoeler, Daniela
Boison, Solomon A.
Milanesi, Marco
Bomba, Lorenzo
Utsunomiya, Yuri T.
Carvalheiro, Roberto
Neves, Haroldo H. R.
da Silva, Marcos V. B.
VanTassell, Curtis P.
Sonstegard, Tad S.
Meszaros, Gabor
Ajmone-Marsan, Paolo
Garcia, Fernando
Soelkner, Johann
TI Low levels of taurine introgression in the current Brazilian Nelore and
Gir indicine cattle populations
SO GENETICS SELECTION EVOLUTION
LA English
DT Article
ID CREOLE CATTLE; GENETIC DIVERSITY; F-STATISTICS; ZEBU CATTLE; BREEDS;
DIFFERENTIATION; ADMIXTURE; ANCESTRY; SYSTEMS; ORIGINS
AB Background: Nelore and Gir are the two most important indicine cattle breeds for production of beef and milk in Brazil. Historical records state that these breeds were introduced in Brazil from the Indian subcontinent, crossed to local taurine cattle in order to quickly increase the population size, and then backcrossed to the original breeds to recover indicine adaptive and productive traits. Previous investigations based on sparse DNA markers detected taurine admixture in these breeds. High-density genome-wide analyses can provide high-resolution information on the genetic composition of current Nelore and Gir populations, estimate more precisely the levels and nature of taurine introgression, and shed light on their history and the strategies that were used to expand these breeds.
Results: We used the high-density Illumina BovineHD BeadChip with more than 777 K single nucleotide polymorphisms (SNPs) that were reduced to 697 115 after quality control filtering to investigate the structure of Nelore and Gir populations and seven other worldwide populations for comparison. Multidimensional scaling and model-based ancestry estimation clearly separated the indicine, European taurine and African taurine ancestries. The average level of taurine introgression in the autosomal genome of Nelore and Gir breeds was less than 1% but was 9% for the Brahman breed. Analyses based on the mitochondrial SNPs present in the Illumina BovineHD BeadChip did not clearly differentiate taurine and indicine haplotype groupings.
Conclusions: The low level of taurine ancestry observed for both Nelore and Gir breeds confirms the historical records of crossbreeding and supports a strong directional selection against taurine haplotypes via backcrossing. Random sampling in production herds across the country and subsequent genotyping would be useful for a more complete view of the admixture levels in the commercial Nelore and Gir populations.
C1 [O'Brien, Ana M. Perez; Hoeler, Daniela; Boison, Solomon A.; Meszaros, Gabor; Soelkner, Johann] Univ Nat Resources & Life Sci BOKU, Dept Sustainable Agr Syst, Vienna, Austria.
[Milanesi, Marco; Bomba, Lorenzo; Ajmone-Marsan, Paolo] Univ Cattolica Sacro Cuore Piacenza, Inst Zootech & Biodivers, Piacenza, Italy.
[Milanesi, Marco; Bomba, Lorenzo; Ajmone-Marsan, Paolo] Univ Cattolica Sacro Cuore Piacenza, Ancient DNA Res Ctr BioDNA, Piacenza, Italy.
[Utsunomiya, Yuri T.; Carvalheiro, Roberto; Neves, Haroldo H. R.; Garcia, Fernando] Univ Estadual Paulista, UNESP, Fac Ciencias Agr & Vet, Jaboticabal, SP, Brazil.
[da Silva, Marcos V. B.] Embrapa Gado Leite, Empresa Brasileira Pesquisa Agr, Juiz De Fora, MG, Brazil.
[VanTassell, Curtis P.; Sonstegard, Tad S.] USDA ARS, Bovine Funct Genom Lab, Beltsville, MD USA.
[Garcia, Fernando] Univ Estadual Paulista, UNESP, Fac Med Vet Aracatuba, Aracatuba, SP, Brazil.
RP Solkner, J (reprint author), Univ Nat Resources & Life Sci BOKU, Dept Sustainable Agr Syst, Vienna, Austria.
EM johann.soelkner@boku.ac.at
RI Utsunomiya, Yuri Tani/K-5214-2013; Milanesi, Marco/P-7473-2015;
OI Utsunomiya, Yuri Tani/0000-0002-6526-8337; Milanesi,
Marco/0000-0001-6244-7455; bomba, lorenzo/0000-0002-6290-8984
FU European Science Foundation; Advances in Farm Animal Genomic Resources
project; USDA-ARS [1265-31000-104-00D]; Conselho Nacional de
Desenvolvimento Cientifico e Tecnologico (CNPq) [process 560922/2010-8,
483590/2010-0]; Fundacao de Amparo a Pesquisa do Estado de Sao Paulo
(FAPESP) [process 2014/01095-8, 2010/52030-2]
FX The authors wish to gratefully acknowledge the US Department of
Agriculture, ZuchtData EDV-Dienstleistungen GmbH (Austria), Embrapa Gado
de Leite (Brazil), and The Bovine HapMap and The Zebu Genome Consortia
for providing the genotypes used in this work. We want to express our
gratitude to the European Science Foundation and the Advances in Farm
Animal Genomic Resources project for supporting this research by
providing AMPO with a travel grant from Austria to Italy. This work was
supported in part by Projects 1265-31000-104-00D from USDA-ARS, Conselho
Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq) - process
560922/2010-8 and 483590/2010-0; and Fundacao de Amparo a Pesquisa do
Estado de Sao Paulo (FAPESP) process 2014/01095-8 and 2010/52030-2.
Mention of trade names or commercial products in this article is solely
for the purpose of providing specific information and does not imply
recommendation or endorsement by the US Department of Agriculture.
NR 30
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Z9 3
U1 0
U2 8
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 0999-193X
EI 1297-9686
J9 GENET SEL EVOL
JI Genet. Sel. Evol.
PD APR 17
PY 2015
VL 47
AR 31
DI 10.1186/s12711-015-0109-5
PG 7
WC Agriculture, Dairy & Animal Science; Genetics & Heredity
SC Agriculture; Genetics & Heredity
GA CG1FT
UT WOS:000353019200003
PM 25928250
ER
PT J
AU Laaksonen, S
Oksanen, A
Hoberg, E
AF Laaksonen, Sauli
Oksanen, Antti
Hoberg, Eric
TI A lymphatic dwelling filarioid nematode, Rumenfilaria andersoni
(Filarioidea; Splendidofilariinae), is an emerging parasite in Finnish
cervids
SO PARASITES & VECTORS
LA English
DT Article
DE Lymphatic filariosis; Rumenfilaria andersoni; Cervids; Emerging
parasites; Climate change
ID SETARIA-TUNDRA; REINDEER; PERITONITIS; FINLAND; PATHOLOGY
AB Background: Recent studies revealed expansion of filarioid nematodes into northern Finland. In addition to Setaria tundra, an abundant filarioid, Rumenfilaria andersoni, was found inhabiting the lymphatic vessels of reindeer. Our study explores the dynamics of the rapid geographic expansion of R. andersoni, defining prevalence and density of microfilariae among 4 new cervid host species in Finland while developing a context for host-parasite ecology in Fennoscandia and more broadly in the Arctic and boreal regions.
Methods: Blood samples were evaluated for presence of microfilariae from 1576 semi-domesticated reindeer, 8 captive reindeer, and free-ranging cervids including 105 wild forest reindeer, 862 moose, 114 white tailed deer and 73 roe deer in 2003-2006 (-2010). Additionally, the prepatent period and the efficacy of ivermectin treatment were investigated.
Results: Rumenfilaria andersoni was found to be a common and abundant parasite in reindeer (0-90%) and wild forest reindeer (41-100%). Also moose (0-12%), white-tailed deer (15-22%) and roe deer (3%) were revealed as definitive hosts. Ivermectin was not effective against adult parasites. The prepatent period was estimated to be about five months.
Conclusions: Rumenfilaria andersoni was identified in 3 endemic cervid species and the introduced white-tailed deer, all constituting previously unrecognized host species in the Palearctic. Among moose, the prevalence and intensity were substantially lower than levels observed among subspecies of reindeer. White-tailed deer had a relatively high prevalence and density of R. andersoni microfilariae (rmf), whereas our limited data for roe deer indicated that the nematode may not have been abundant. Density and prevalence of rmf in moose and white tailed deer suggests the nematode may be adapted to these species, and that these cervids may be among the primary hosts of R. andersoni and reservoirs for transmission in Finland. Our current data suggest that R. andersoni became established in Finland recently, coincidental with introduction of white-tailed deer from North America in 1935; subsequent invasion and emergence in the past 70-80 years appears driven by climate-related factors. An alternative hypothesis for a temporally deeper occurrence for R. andersoni in Fennoscandia, representing post-Pleistocene range expansion with moose tracking deglaciation, is not firmly supported.
C1 [Laaksonen, Sauli] Finnish Food Safety Author Evira, FI-00790 Helsinki, Finland.
[Oksanen, Antti] Finnish Food Safety Author Evira FINPAR, FI-90590 Oulu, Finland.
[Hoberg, Eric] USDA ARS, Anim Parasit Dis Lab, US Natl Parasite Collect, Beltsville, MD 20705 USA.
RP Laaksonen, S (reprint author), Finnish Food Safety Author Evira, Mustialankatu 3, FI-00790 Helsinki, Finland.
EM hirvi54@gmail.com
FU Ministry of Agriculture and Forestry (MAKERA)
FX The authors thank Ministry of Agriculture and Forestry (MAKERA) for
funding the Reindeer Health Care Program, which constituted the basis of
this study. We also thank the personnel of the Oulu University
Experimental Zoo and the laboratory personnel of Evira in Oulu, for
assistance, and Tomas Orro, who gave helpful comments on the analysis of
the data. We are gratitude to reindeer veterinarian in Lapland and
hunters all over Finland for cooperation and sample collection.
NR 35
TC 2
Z9 2
U1 3
U2 14
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1756-3305
J9 PARASITE VECTOR
JI Parasites Vectors
PD APR 16
PY 2015
VL 8
AR 228
DI 10.1186/s13071-015-0835-0
PG 13
WC Parasitology
SC Parasitology
GA CH1CX
UT WOS:000353759800001
PM 25884201
ER
PT J
AU Belknap, WR
McCue, KF
Harden, LA
Vensel, WH
Bausher, MG
Stover, E
AF Belknap, William R.
McCue, Kent F.
Harden, Leslie A.
Vensel, William H.
Bausher, Michael G.
Stover, Ed
TI A family of small cyclic amphipathic peptides (SCAmpPs) genes in citrus
SO BMC GENOMICS
LA English
DT Article
DE Citrus sinensis; Citrus clementina; Poncirus trifoliata; Ribosomally
synthesized
ID ANTIMICROBIAL PEPTIDES; NATURAL-PRODUCTS; RESISTANCE GENE; BIOSYNTHESIS;
EVOLUTION; PROTEIN; DNA; CARYOPHYLLACEAE; VALINOMYCIN; PRECURSORS
AB Background: Citrus represents a crop of global importance both in economic impact and significance to nutrition. Citrus production worldwide is threatened by the disease Huanglongbing (HLB), caused by the phloem-limited pathogen Candidatus Liberibacter spp.. As a source of stable HLB-resistance has yet to be identified, there is considerable interest in characterization of novel disease-associated citrus genes.
Results: A gene family of Small Cyclic Amphipathic Peptides (SCAmpPs) in citrus is described. The citrus genomes contain 100-150 SCAmpPs genes, approximately 50 of which are represented in the citrus EST database. These genes encode small similar to 50 residue precursor proteins that are post-translationally processed, releasing 5-10 residue cyclic peptides. The structures of the SCAmpPs genes are highly conserved, with the small coding domains interrupted by a single intron and relatively extended untranslated regions. Some family members are very highly transcribed in specific citrus tissues, as determined by representation in tissue-specific cDNA libraries. Comparison of the ESTs of related SCAmpPs revealed an unexpected evolutionary profile, consistent with targeted mutagenesis of the predicted cyclic peptide domain. The SCAmpPs genes are displayed in clusters on the citrus chromosomes, with apparent association with receptor leucine-rich repeat protein arrays. This study focused on three SCAmpPs family members with high constitutive expression in citrus phloem. Unexpectedly high sequence conservation was observed in the promoter region of two phloem-expressed SCAmpPs that encode very distinct predicted cyclic products. The processed cyclic product of one of these phloem SCAmpPs was characterized by LC-MS-MS analysis of phloem tissue, revealing properties consistent with a K+ ionophore.
Conclusions: The SCAmpPs amino acid composition, protein structure, expression patterns, evolutionary profile and chromosomal distribution are consistent with designation as ribosomally synthesized defense-related peptides.
C1 [Belknap, William R.; McCue, Kent F.; Harden, Leslie A.; Vensel, William H.] USDA ARS, Western Reg Res Ctr, Albany, CA 94710 USA.
[Bausher, Michael G.; Stover, Ed] USDA ARS, US Hort Res Lab, Ft Pierce, FL USA.
RP Belknap, WR (reprint author), USDA ARS, Western Reg Res Ctr, 800 Buchanan St, Albany, CA 94710 USA.
EM william.belknap@ars.usda.gov
FU Agricultural Research Service National Programs (CRIS Project)
[5325-21220-001-00D, 5325-43000-028-00D]
FX This work supported by the Agricultural Research Service National
Programs (CRIS Project Numbers 5325-21220-001-00D and
5325-43000-028-00D).
NR 35
TC 0
Z9 0
U1 3
U2 14
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2164
J9 BMC GENOMICS
JI BMC Genomics
PD APR 16
PY 2015
VL 16
AR 303
DI 10.1186/s12864-015-1486-4
PG 11
WC Biotechnology & Applied Microbiology; Genetics & Heredity
SC Biotechnology & Applied Microbiology; Genetics & Heredity
GA CG6ER
UT WOS:000353389700002
PM 25887227
ER
PT J
AU Kim, ES
Sonstegard, TS
Rothschild, MF
AF Kim, Eui-Soo
Sonstegard, Tad S.
Rothschild, Max F.
TI Recent artificial selection in US Jersey cattle impacts autozygosity
levels of specific genomic regions
SO BMC GENOMICS
LA English
DT Article
DE SNP; Runs of homozygosity; Signatures of selection; Jersey cattle
ID RECENT POSITIVE SELECTION; DAIRY-CATTLE; HOLSTEIN CATTLE; COMPLEX
TRAITS; SIGNATURES; POPULATION; POLYMORPHISM; ANGUS; MODEL; LOCI
AB Background: Genome signatures of artificial selection in U.S. Jersey cattle were identified by examining changes in haplotype homozygosity for a resource population of animals born between 1953 and 2007. Genetic merit of this population changed dramatically during this period for a number of traits, especially milk yield. The intense selection underlying these changes was achieved through extensive use of artificial insemination (AI), which also increased consanguinity of the population to a few superior Jersey bulls. As a result, allele frequencies are shifted for many contemporary animals, and in numerous cases to a homozygous state for specific genomic regions. The goal of this study was to identify those selection signatures that occurred after extensive use of AI since the 1960, using analyses of shared haplotype segments or Runs of Homozygosity. When combined with animal birth year information, signatures of selection associated with economically important traits were identified and compared to results from an extended haplotype homozygosity analysis.
Results: Overall, our results reveal that more recent selection increased autozygosity across the entire genome, but some specific regions increased more than others. A genome-wide scan identified more than 15 regions with a substantial change in autozygosity. Haplotypes found to be associated with increased milk, fat and protein yield in U.S. Jersey cattle also consistently increased in frequency.
Conclusions: The analyses used in this study was able to detect directional selection over the last few decades when individual production records for Jersey animals were available.
C1 [Kim, Eui-Soo; Sonstegard, Tad S.] ARS, USDA, Anim Genom & Improvement Lab, Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
[Kim, Eui-Soo; Rothschild, Max F.] Iowa State Univ, Dept Anim Sci, Ames, IA 50011 USA.
RP Sonstegard, TS (reprint author), ARS, USDA, Anim Genom & Improvement Lab, Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
EM tad.sonstegard@ars.usda.gov
FU USDA Agricultural Research Service [1265-31000-104D]; Next-Generation
BioGreen 21 Program, Rural Development Administration, Republic of Korea
[PJ008196]; Animal Improvement Program Group within AGIL
FX This work was supported by project (1265-31000-104D (AGIL)) from the
USDA Agricultural Research Service. E.-S. Kim was partially supported by
a grant from the Next-Generation BioGreen 21 Program (No. PJ008196),
Rural Development Administration, Republic of Korea. We thank Alicia
Beaver (USDA, BFGL) for processing DNA samples for BovineSNP50 analysis
and the Animal Improvement Program Group within AGIL for support with
the Jersey pedigree information. Mention of trade names or commercial
products in this article is solely for the purpose of providing specific
information and does not imply recommendation or endorsement by the U.S.
Department of Agriculture.
NR 45
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Z9 2
U1 1
U2 6
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2164
J9 BMC GENOMICS
JI BMC Genomics
PD APR 16
PY 2015
VL 16
AR 302
DI 10.1186/s12864-015-1500-x
PG 10
WC Biotechnology & Applied Microbiology; Genetics & Heredity
SC Biotechnology & Applied Microbiology; Genetics & Heredity
GA CG6ER
UT WOS:000353389700001
PM 25887761
ER
PT J
AU Chen, P
Lu, J
Haack, RA
Ye, H
AF Chen, Peng
Lu, Jun
Haack, Robert A.
Ye, Hui
TI Attack Pattern and Reproductive Ecology of Tomicus brevipilosus
(Coleoptera: Curculionidae) on Pinus yunnanensis in Southwestern China
SO JOURNAL OF INSECT SCIENCE
LA English
DT Article
DE Tomicus brevipilosus; Tomicus yunnanensis; Tomicus minor; pine shoot
beetle; within-tree attack pattern
ID BARK BEETLES COLEOPTERA; SHOOT-FEEDING ECOLOGY; PINIPERDA COLEOPTERA;
BREEDING PERFORMANCE; SOUTHERN CHINA; GENUS TOMICUS; MINOR COL.;
SCOLYTIDAE; DESTRUENS; SWEDEN
AB Tomicus brevipilosus (Eggers) (Coleoptera: Curculionidae, Scolytinae) was recently discovered as a new pest of Yunnan pine (Pinus yunnanensis Franchet) in Yunnan Province in southwestern China. However, little was known on its reproductive biology and pattern of trunk attack on Yunnan pine. The objectives of this study were to better understand the reproductive biology of T. brevipilosus by investigating the seasonality of trunk attacks by parent adults for the purpose of reproduction (i.e., breeding attacks) and the within-tree pattern of these attacks. Our results showed that T. brevipilosus breeding attacks in P. yunnanensis generally started in early March and ended in early June in Anning County, Yunnan. T. brevipilosus exhibited two general patterns of infestation. From early March to mid-April, T. brevipilosus bred preferentially in the trunks of Yunnan pine trees that were already infested by Tomicus yunnanensis Kirkendall and Faccoli and Tomicus minor (Hartig), colonizing spaces along the trunk (mostly in the mid-and lower trunk) that were not already occupied by the other two Tomicus species. Later, from about mid-April to early June, when there were no Yunnan pine trees newly infested by T. yunnanensis and T. minor, T. brevipilosus attacked Yunnan pine by itself, infesting the lower parts of the trunk first and then infesting progressively upward along the trunk into the crown. Infestation by T. brevipilosus extends the total period that P. yunnanensis trees are under attack by Tomicus beetles in southwestern China, which helps explain why Yunnan pine has suffered high levels of tree mortality in recent decades.
C1 [Chen, Peng; Lu, Jun; Ye, Hui] Yunnan Univ, Lab Biol Invas & Transboundary Ecosecur, Kunming 650091, Peoples R China.
[Chen, Peng] Yunnan Acad Forestry, Kunming 650091, Peoples R China.
[Haack, Robert A.] USDA, Forest Serv, No Res Stn, Lansing, MI 48910 USA.
RP Ye, H (reprint author), Yunnan Univ, Lab Biol Invas & Transboundary Ecosecur, Kunming 650091, Peoples R China.
EM yehui@ynu.edu.cn
FU Natural Science Foundation of China [31160095]; Yunnan Provincial
Natural Science Foundation [2013FA055]; Life Sciences College of Yunnan
University, Yunnan Key Laboratory of International Rivers and
Transboundary Eco-Security; Key Laboratory for Animal Genetic Diversity
and Evolution of Higher Education in Yunnan Province
FX This study was supported by the Natural Science Foundation of China
(31160095), Yunnan Provincial Natural Science Foundation (2013FA055),
the opening project of the Life Sciences College of Yunnan University,
Yunnan Key Laboratory of International Rivers and Transboundary
Eco-Security, and Key Laboratory for Animal Genetic Diversity and
Evolution of Higher Education in Yunnan Province. We thank Toby R.
Petrice for his valuable comments on the preliminary manuscript. Wei
Huang from Yunnan Climate Center kindly supplied temperature data of our
study site.
NR 45
TC 0
Z9 0
U1 4
U2 10
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 1536-2442
EI 2250-2645
J9 J INSECT SCI
JI J Insect Sci.
PD APR 16
PY 2015
VL 15
AR 43
DI 10.1093/jisesa/iev014
PG 8
WC Entomology
SC Entomology
GA CG3UX
UT WOS:000353206200001
ER
PT J
AU Maggioli, MF
Palmer, MV
Thacker, TC
Vordermeier, HM
Waters, WR
AF Maggioli, Mayara F.
Palmer, Mitchell V.
Thacker, Tyler C.
Vordermeier, H. Martin
Waters, W. Ray
TI Characterization of Effector and Memory T Cell Subsets in the Immune
Response to Bovine Tuberculosis in Cattle
SO PLOS ONE
LA English
DT Article
ID MYCOBACTERIUM-BOVIS; GAMMA-INTERFERON; INFECTED CATTLE; HISTORICAL
PERSPECTIVES; PERIPHERAL-TISSUES; CALMETTE-GUERIN; M. BOVIS; BCG;
PROTECTION; VACCINES
AB Cultured IFN-gamma ELISPOT assays are primarily a measure of central memory T cell (Tcm) responses with humans; however, this important subset of lymphocytes is poorly characterized in cattle. Vaccine-elicited cultured IFN-gamma ELISPOT responses correlate with protection against bovine tuberculosis in cattle. However, whether this assay measures cattle Tcm responses or not is uncertain. The objective of the present study was to characterize the relative contribution of Tcm (CCR7(+), CD62L(hi), CD45RO(+)), T effector memory (Tem, defined as: CCR7(-), CD62L(low/int), CD45RO(+)), and T effector cells (CCR7(-), CD62L(-/low), CD45RO(-)), in the immune response to Mycobacterium bovis. Peripheral blood mononuclear cells (PBMC) from infected cattle were stimulated with a cocktail of M. bovis purified protein derivative, rTb10.4 and rAg85A for 13 days with periodic addition of fresh media and rIL-2. On day 13, cultured PBMC were re-stimulated with medium alone, rESAT-6:CFP10 or PPDb with fresh autologous adherent cells for antigen presentation. Cultured cells (13 days) or fresh PBMCs (ex vivo response) from the same calves were analyzed for IFN-gamma production, proliferation, and CD4, CD45RO, CD62L, CD44, and CCR7 expression via flow cytometry after overnight stimulation. In response to mycobacterial antigens, similar to 75% of CD4(+) IFN-gamma(+) cells in long-term cultures expressed a Tcm phenotype while less than 10% of the ex vivo response consisted of Tcm cells. Upon re-exposure to antigen, long-term cultured cells were highly proliferative, a distinctive characteristic of Tcm, and the predominant phenotype within the long-term cultures switched from Tcm to Tem. These findings suggest that proliferative responses of Tcm cells to some extent occurs simultaneously with reversion to effector phenotypes (mostly Tem). The present study characterizes Tcm cells of cattle and their participation in the response to M. bovis infection.
C1 [Maggioli, Mayara F.; Palmer, Mitchell V.; Thacker, Tyler C.; Waters, W. Ray] Natl Anim Dis Ctr, Infect Bacterial Dis Livestock Res Unit, Ames, IA 50010 USA.
[Maggioli, Mayara F.] Iowa State Univ, Coll Vet Med, Dept Vet Pathol, Ames, IA USA.
[Vordermeier, H. Martin] Anim Hlth & Vet Labs Agcy Weybridge, TB Res Grp, Addlestone, Surrey, England.
RP Maggioli, MF (reprint author), Natl Anim Dis Ctr, Infect Bacterial Dis Livestock Res Unit, Ames, IA 50010 USA.
EM mayaramaggioli@gmail.com
RI Vordermeier, H Martin/C-6936-2011
NR 76
TC 3
Z9 3
U1 0
U2 8
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 16
PY 2015
VL 10
IS 4
AR UNSP e0122571
DI 10.1371/journal.pone.0122571
PG 20
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CG1ES
UT WOS:000353016500023
PM 25879774
ER
PT J
AU Mohammad, MA
Maningat, P
Sunehag, AL
Haymond, MW
AF Mohammad, Mahmoud A.
Maningat, Patricia
Sunehag, Agneta L.
Haymond, Morey W.
TI Precursors of hexoneogenesis within the human mammary gland
SO AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM
LA English
DT Article
DE galactose; lactose synthesis; gluconeogenesis; pentose phosphate
pathway; stable isotopes GC-MS
ID LACTOSE SYNTHESIS; LIPOPROTEIN-LIPASE; LACTATING WOMEN; FASTING HUMANS;
PENTOSE CYCLE; FATTY-ACIDS; HUMAN-MILK; GLUCONEOGENESIS; GLUCOSE;
GLYCEROL
AB The human mammary gland is capable of de novo synthesis of glucose and galactose (hexoneogenesis); however, the carbon source is incompletely understood. In this study, we investigated the role of acetate, glutamine, lactate and glycerol as potential carbon sources for hexoneogenesis. Healthy breastfeeding women were studied following a 24-h fast on two occasions separated by 1-3 wk. Five women were infused with [U-C-13] lactate or [1,2-C-13(2)] glutamine and five women with [U-C-13] glycerol or [1,2-C-13(2)] acetate. Enrichments of C-13 in plasma and milk substrates were analyzed using GC-MS. Infusion of labeled lactate, glycerol, glutamine, and acetate resulted in plasma glucose being 22.0 +/- 3.7, 11.2 +/- 1.0, 2.5 +/- 0.5, and 1.3 +/- 0.2% labeled, respectively. Lactate, glutamine, or acetate did not contribute to milk glucose or galactose (0-2%). In milk, C-13-free glycerol enrichment was one-fourth that in plasma but free glycerol concentration in milk was fourfold higher than in plasma. Using [U-C-13] glycerol and by accounting for tracer dilution, glycerol alone contributed to 10 +/- 2 and 69 +/- 11% of the hexoneogenesis of milk glucose and galactose, respectively. During [U-C-13] glycerol infusion, the ratio of M-3 enrichment on 4-6 carbons/M-3 on 1-3 carbons of galactose was higher (P < 0.05, 1.22 +/- 0.05) than those of glucose in plasma (1.05 +/- 0.03) and milk (1.07 +/- 0.02). Reanalysis of samples from a previous study involving [U-C-13] glucose infusion alone suggested labeling a portion of galactose consistent with pentose phosphate pathway (PPP) activity. We conclude that, although lactate contributed significantly to gluconeogenesis, glycerol alone provides the vast majority of substrate for hexoneogenesis. The relative contribution of the PPP vs. the reversal Embden-Meyerhof pathway to hexoneogenesis within the human mammary gland remains to be determined.
C1 [Mohammad, Mahmoud A.; Maningat, Patricia; Sunehag, Agneta L.; Haymond, Morey W.] USDA ARS, Baylor Coll Med, Childrens Nutr Res Ctr, Dept Pediat, Houston, TX USA.
RP Haymond, MW (reprint author), Childrens Nutr Res Ctr, 1100 Bates St, Houston, TX 77030 USA.
EM mhaymond@bcm.edu
OI Mohammad, Mahmoud/0000-0002-6535-5529
FU National Institutes of Health [RO1 DK-55478, HD-37857, MO1 RR-00188,
USDA/ARS 6250-5100]
FX This project was supported by National Institutes of Health Grants RO1
DK-55478, HD-37857, MO1 RR-00188, and USDA/ARS 6250-5100. This work is a
publication of the USDA/ARS Children's Nutrition Research Center,
Department of Pediatrics, Baylor College of Medicine (Houston, TX). The
contents of this publication do not necessarily reflect the views of
policies of the US Department of Agriculture, nor does mention of trade
names, commercial products, or organizations imply endorsement from the
US Government.
NR 35
TC 3
Z9 3
U1 0
U2 1
PU AMER PHYSIOLOGICAL SOC
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814 USA
SN 0193-1849
EI 1522-1555
J9 AM J PHYSIOL-ENDOC M
JI Am. J. Physiol.-Endocrinol. Metab.
PD APR 15
PY 2015
VL 308
IS 8
BP E680
EP E687
DI 10.1152/ajpendo.00356.2014
PG 8
WC Endocrinology & Metabolism; Physiology
SC Endocrinology & Metabolism; Physiology
GA CH3SS
UT WOS:000353951200008
PM 25670824
ER
PT J
AU Iho, A
Ribaudo, M
Hyytiainen, K
AF Iho, Antti
Ribaudo, Marc
Hyytiainen, Kari
TI Water protection in the Baltic Sea and the Chesapeake Bay: Institutions,
policies and efficiency
SO MARINE POLLUTION BULLETIN
LA English
DT Article
DE Cost-efficiency; Point source pollution; Nonpoint source pollution;
Nutrient trading; Chesapeake Bay; Baltic Sea
ID POLLUTION-CONTROL; EUTROPHICATION; REDUCTION; QUALITY; LESSONS; COSTS
AB The Baltic Sea and the Chesapeake Bay share many characteristics. Both are shallow, brackish marine areas that suffer from eutrophication. Successful policies targeting point source pollution have lowered nutrient loads in both areas, but achieving the desired marine quality will require further abatement: efforts may be extended to more complicated and expensive pollution sources, notably agricultural nonpoint loads. Despite their ecological similarities, the two watersheds have different histories and institutional settings and have thus adopted different policies. Comparing and contrasting the policies reveal ways to improve the efficiency of each and ways to avoid the path of trial and error. No comparison of the parallel protection efforts, which involve expenditures of hundreds of millions of dollars annually, has been carried out to date. The present paper analyzes the policies applied in the two regions, distilling the results into six recommendations for future steps in preserving what are valuable sea areas. (C) 2015 Elsevier Ltd. All rights reserved.
C1 [Iho, Antti] Nat Resources Inst Finland Luke, Helsinki 00790, Finland.
[Ribaudo, Marc] Econ Res Serv, USDA, New York, NY USA.
[Hyytiainen, Kari] Univ Helsinki, Dept Econ & Management, FIN-00014 Helsinki, Finland.
RP Iho, A (reprint author), Nat Resources Inst Finland Luke, Latokartanonkaari 9, Helsinki 00790, Finland.
EM antti.iho@luke.fi
OI Iho, Antti/0000-0003-2029-570X
NR 56
TC 3
Z9 3
U1 6
U2 28
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0025-326X
EI 1879-3363
J9 MAR POLLUT BULL
JI Mar. Pollut. Bull.
PD APR 15
PY 2015
VL 93
IS 1-2
BP 81
EP 93
DI 10.1016/j.marpolbul.2015.02.011
PG 13
WC Environmental Sciences; Marine & Freshwater Biology
SC Environmental Sciences & Ecology; Marine & Freshwater Biology
GA CH0ST
UT WOS:000353733400023
PM 25752532
ER
PT J
AU Abdelfattah, EM
Karousa, MM
Schutz, MM
Lay, DC
Marchant-Forde, JN
Eicher, SD
AF Abdelfattah, E. M.
Karousa, M. M.
Schutz, M. M.
Lay, D. C., Jr.
Marchant-Forde, J. N.
Eicher, S. D.
TI Acute phase cytokines, TAC1, and toll-like receptor4 mRNA expression and
health associated with group size in veal calves
SO VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY
LA English
DT Article
DE Group size; Health; Immune status; Stress; Veal calf
ID ALVEOLAR MACROPHAGES; RISK-FACTORS; STRESS; IMMUNE; RESPONSES;
LOCOMOTION; PHYSIOLOGY; BEHAVIOR; PATHWAY; GROWTH
AB Chronic stressors are a major health and well-being issue in animals. Immune status of animals under chronic stress is compromised, thus reducing disease resistance and compromising well-being of the animal. The objective of this study was to determine the influence of group size of veal calves on immune status and leukocyte mRNA expression of acute phase cytokines, toll-like receptor 4 (TLR4) and tachykinin 1 (TAC1) over a five-month finishing period. Holstein bull calves (n = 168), 44 +/- 3 days of age were assigned to one of three treatments; 2, 4, or 8 calves/pen (pen space allowance of 1.82 m(2)/calf). jugular blood samples were collected at the day of grouping and then monthly for 4 months. The differential leukocyte counts were determined and mRNA was extracted from the leukocytes. Reverse transcription-qPCR was used to measure the gene expression of interleuldn-1 (IL-1 beta), IL-1 receptor antagonist (IL-1Ra), tumor necrosis factor (TNF-alpha), TLR4, and TAC1 in leukocytes. Health was evaluated before grouping and monthly for 4 months. On the 1st month after grouping, veal calves that were housed in groups of 8 have greater expression of IL-1 beta mRNA than calves housed in groups of 4 or 2 (treatment x month, P = 0.04). Also at 1 month, groups of 8 had greater TAC1 expression (P < 0.05) than calves housed in groups of 4 or 2. However, the expression of IL-1Ra, TNF-alpha, and TLR4 were not influenced by group size. In the first month of the trial, calves in groups of 8 coughed more (P < 0.05) than calves in groups of 2 and coughed more than calves in groups of 4 and 2 during the 2nd month (treatment x month, P = 0.03). Calves housed in groups of 8 tended to have greater neutrophil percentage (P = 0.09), neutrophil to lymphocyte ratio (P = 0.06), and had lower lymphocyte percentage (P = 0.06) than those housed in groups of 4 or 2. In conclusion, the number of veal calves in a group, given the same space during the finishing period did not alter IL-1Ra, TNF-alpha, and TLR4 mRNA expression. However, housing of calves in groups of 8 was associated with greater expression of IL-1 beta and TAC1 mRNA in peripheral blood leukocytes, and coughing during the first 2 months after grouping. Therefore, housing of veal calves in larger groups may lead to greater susceptibility to respiratory disease and stress. Published by Elsevier B.V.
C1 [Abdelfattah, E. M.; Karousa, M. M.] Benha Univ, Fac Vet Med, Dept Anim Hyg Behav & Management, Qalyubia 13736, Moshtohor, Egypt.
[Schutz, M. M.] Purdue Univ, Dept Anim Sci, W Lafayette, IN 47907 USA.
[Lay, D. C., Jr.; Marchant-Forde, J. N.; Eicher, S. D.] USDA ARS, Livestock Behav Res Unit, W Lafayette, IN 47907 USA.
RP Eicher, SD (reprint author), Purdue Univ, USDA ARS, 125 S Russell St,216 Poultry Bldg, W Lafayette, IN 47907 USA.
EM Susan.Eicher@ars.usda.gov
RI Abdelfattah, Essam/D-2365-2016;
OI Abdelfattah, Essam/0000-0002-7267-8406; Marchant-Forde,
Jeremy/0000-0002-5287-2914
FU Egyptian Cultural and Educational Bureau; USDA-ARS
FX This work was funded by the Egyptian Cultural and Educational Bureau,
and USDA-ARS.
NR 35
TC 2
Z9 2
U1 5
U2 7
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0165-2427
EI 1873-2534
J9 VET IMMUNOL IMMUNOP
JI Vet. Immunol. Immunopathol.
PD APR 15
PY 2015
VL 164
IS 3-4
BP 118
EP 126
DI 10.1016/j.vetimm.2015.01.008
PG 9
WC Immunology; Veterinary Sciences
SC Immunology; Veterinary Sciences
GA CH2IV
UT WOS:000353849800003
PM 25746346
ER
PT J
AU Levings, RL
Collins, JK
Patterson, PA
Roth, JA
AF Levings, Randall L.
Collins, James K.
Patterson, Peggy A.
Roth, James A.
TI Virus, strain, and epitope specificities of neutralizing bovine
monoclonal antibodies to bovine herpesvirus 1 glycoproteins gB, gC, and
gD, with sequence and molecular model analysis
SO VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY
LA English
DT Article
DE Bovine herpesvirus strain; Cross-react; Envelope glycoprotein; Molecular
model; Neutralization epitope; Sequence identity
ID SWISS-MODEL; RHINOTRACHEITIS VIRUS; TYPE-1 GLYCOPROTEINS; PROTEIN;
BHV-1; GENE; SITE; GIV; EXPRESSION; ALPHAHERPESVIRUSES
AB Three bovine monoclonal antibodies (BomAb) raised to bovine herpesvirus (BoHV) 1.1 and specific for the viral glycoproteins gB, gC, and gD were tested for reactivity to two isolates of BoHV-1.1, one of BoHV-1.2, and two of BoHV-5 in virus neutralization and indirect fluorescent antibody assays. They were also tested with other herpesviruses infecting cattle and other mammalian alphaherpesviruses, and found negative or of negligible reactivity. Their BoHV-1.1 epitope specificity was examined using competitive ELISA with peroxidase-labeled murine monoclonal antibodies (MumAb) that had been previously characterized. To explain the incongruities observed, the amino acid sequences of the epitopes and adjacent regions of BoHV-1.1, 1.2, and 5 were compared, and molecular modeling was performed using human herpesvirus 1 glycoprotein crystals as templates. The anti-gB BomAb reacted strongly with BoHV-1.1 and BoHV-1.2, and poorly or not at all with BoHV-5. It competed with a MumAb specific for a BoHV-1.1 gB epitope previously shown to only partially cross-react between BoHV-1 and BoHV-5. BoHV-5 gB has nearly identical sequence with BoHV-1.1 in the epitope region, but modeling suggested the lack of cross-reactivity of the MumAb was due to masking of the epitope in BoHV-5 by an adjacent region, which has significant sequence differences between BoHV-1.1 and BoHV-5. The BomAb reactivity could also be explained by masking, or by reactivity with the adjacent region. The anti-gC BomAb reacted strongly with one isolate of BoHV-1.1 and BoHV-1.2, less well with a heterologous isolate of BoHV-1.1, and poorly or not at all with BoHV-5. It did not compete with any of the anti-gC MumAb tested, but a target domain was suggested by BoHV-1.1, 1.2, and 5 sequence divergence. The anti-gD BomAb reacted strongly with all BoHV-1.1, 1.2, and 5 isolates tested. However, it competed with two MumAb previously shown to not cross-react between BoHV-1.1 and BoHV-5. Sequence analysis and modeling suggested the cross-reactivity of the anti-gD BomAb was due to it reacting with an epitope-adjacent region or regions conserved between BoHV-1.1 and BoHV-5, but not with other alphaherpesviruses. The results suggest the usefulness of combining in vitro biological data with sequence or structure modeling data to investigate important epitopes involved in immunity to infectious agents. Published by Elsevier B.V.
C1 [Levings, Randall L.] APHIS, STAS, VS, USDA, Ames, IA 50010 USA.
[Collins, James K.] Univ Arizona, Vet Sci & Microbiol, Tucson, AZ 85721 USA.
[Patterson, Peggy A.] APHIS, Ctr Vet Biol, VS, USDA, Ames, IA 50010 USA.
[Roth, James A.] Iowa State Univ, Coll Vet Med, Vet Microbiol & Prevent Med, Ames, IA 50011 USA.
RP Levings, RL (reprint author), APHIS, STAS, VS, USDA, 1920 Dayton Ave POB 844, Ames, IA 50010 USA.
EM Randall.L.Levings@aphis.usda.gov
RI Roth, James/A-7122-2009
OI Roth, James/0000-0003-3562-668X
FU CVB; Emergency Management and Diagnostics, VS, APHIS, USDA
FX The authors would like to thank lone Stoll of CVB for BomAb production,
Lee Ann Hobbs of the National Animal Disease Center (formerly of CVB)
for immunoassay assistance, CVB Virology personnel and Janet Warg of
NVSL for virus specificity assay assistance, Virginia K. Ayers of
Colorado State University for conducting cELISAs, and Jim Fosse of the
National Centers for Animal Health for graphics assistance. Thanks also
to Drs. Jose R. Diez of VS, APHIS, USDA and Drs. Kenneth B. Platt, Brett
A. Sponseller, John E. Mayfield and Jin-Kyoung Yoon of Iowa State
University for critical review of the manuscript. Financial support was
provided by the CVB and Emergency Management and Diagnostics, VS, APHIS,
USDA.
NR 91
TC 0
Z9 1
U1 1
U2 6
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0165-2427
EI 1873-2534
J9 VET IMMUNOL IMMUNOP
JI Vet. Immunol. Immunopathol.
PD APR 15
PY 2015
VL 164
IS 3-4
BP 179
EP 193
DI 10.1016/j.vetimm.2015.02.009
PG 15
WC Immunology; Veterinary Sciences
SC Immunology; Veterinary Sciences
GA CH2IV
UT WOS:000353849800009
PM 25771882
ER
PT J
AU Kim, WH
Fernandez, CP
Diaz, JAR
Jeong, J
Kim, S
Lillehoj, HS
Chang, HH
Min, W
AF Kim, Woo H.
Fernandez, Cherry P.
Diaz, Joyce Anne R.
Jeong, Jipseol
Kim, Suk
Lillehoj, Hyun S.
Chang, Hong H.
Min, Wongi
TI Molecular cloning, characterization and mRNA expression of duck
interleukin-17F
SO VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY
LA English
DT Article
DE Duck; Cytokine; Salmonella infection; Interleukin-17F
ID ENTERICA SEROVAR ENTERITIDIS; AVIAN INFLUENZA-VIRUS;
SALMONELLA-TYPHIMURIUM; T-CELLS; INFLAMMATORY RESPONSES;
INTESTINAL-MUCOSA; FAMILY-MEMBERS; CYTOKINE; INFECTION; IL-17F
AB Interleukin-17F (IL-17F) is a proinflammatory cytokine that plays an important role in gut homeostasis. A full-length duck IL-17F (dulL-17F) cDNA with a 510-bp coding region was identified in ConA-activated splenic lymphocytes. dulL-17F is predicted to encode 166 amino acids, including a 26-amino acid signal peptide, a single N-linked glycosylation site, and six cysteine residues that are conserved in mammalian IL-17. dulL-17F shares 77.5% amino acid sequence identity with chicken IL-17F (chIL-17F), 37-46% with corresponding mammalian homologues, and 53.5% with the previously described duck IL-17A (duIL-17A). The duIL-17F transcripts were expressed in a wide range of untreated tissues; levels were highest in the liver and moderate in the thymus, bursa, kidney, and intestinal tissues. Expression levels of duIL-17F transcript were slightly up-regulated in ConA- and LPS-activated splenic lymphocytes but not in poly I:C stimulated cells. duIL-17F forms heterodimers with dulL-17A. Recombinant dulL-17F, like dulL-17A, induced IL-1 beta, IL-6, and IL-8 expression in duck embryonic fibroblasts (DEFs). dulL-17A, but not duIL-17F expression, was significantly up-regulated in the liver and spleen of Salmonella Typhimurium-infected ducks. Further analysis of the contributions of IL-17F to different Salmonella spp. or other disease models will be required to expand our understanding of its biological functions. (C) 2015 Elsevier B.V. All rights reserved.
C1 [Kim, Woo H.; Fernandez, Cherry P.; Diaz, Joyce Anne R.; Kim, Suk; Min, Wongi] Gyeongsang Natl Univ, Coll Vet Med, Jinju 660701, Gyeongnam, South Korea.
[Kim, Woo H.; Fernandez, Cherry P.; Diaz, Joyce Anne R.; Kim, Suk; Min, Wongi] Gyeongsang Natl Univ, Inst Anim Med, Jinju 660701, Gyeongnam, South Korea.
[Jeong, Jipseol] Environm Hlth Res Dept, Inchon 404708, South Korea.
[Lillehoj, Hyun S.] ARS, Anim Biosci & Biotechnol Lab, BARC, USDA, Beltsville, MD 20705 USA.
[Chang, Hong H.] Gyeongsang Natl Univ, Coll Agr, Dept Anim Sci, Jinju 660701, South Korea.
RP Min, W (reprint author), Gyeongsang Natl Univ, Coll Vet Med, 501 Jinju Daero, Jinju 660701, Gyeongnam, South Korea.
EM wongimin@gnu.ac.kr
OI Min, Wongi/0000-0003-2437-7366
FU Basic Science Research Program, Korea [NRF-2013R1A1A4A01006646]
FX This research was supported by the Basic Science Research Program
(NRF-2013R1A1A4A01006646), Korea.
NR 36
TC 1
Z9 1
U1 0
U2 9
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0165-2427
EI 1873-2534
J9 VET IMMUNOL IMMUNOP
JI Vet. Immunol. Immunopathol.
PD APR 15
PY 2015
VL 164
IS 3-4
BP 194
EP 200
DI 10.1016/j.vetimm.2015.02.007
PG 7
WC Immunology; Veterinary Sciences
SC Immunology; Veterinary Sciences
GA CH2IV
UT WOS:000353849800010
PM 25769677
ER
PT J
AU Dubey, JP
Howe, DK
Furr, M
Saville, WJ
Marsh, AE
Reed, SM
Grigg, ME
AF Dubey, J. P.
Howe, D. K.
Furr, M.
Saville, W. J.
Marsh, A. E.
Reed, S. M.
Grigg, M. E.
TI An update on Sarcocystis neurona infections in animals and equine
protozoal myeloencephalitis (EPM)
SO VETERINARY PARASITOLOGY
LA English
DT Review
DE Sarcocystis neurona; Equine protozoal myeloencephalitis; Marine mammals;
Epidemiology; Life cycle; Prevention
ID OPOSSUMS DIDELPHIS-VIRGINIANA; ENHYDRA-LUTRIS-NEREIS; RACCOONS
PROCYON-LOTOR; GENE KNOCKOUT MICE; NUCLEOSIDE TRIPHOSPHATE HYDROLASE;
CATS FELIS-DOMESTICUS; ARMADILLO DASYPUS-NOVEMCINCTUS; DISTEMPER
VIRUS-INFECTION; FLUORESCENT-ANTIBODY TEST; PHOCA-VITULINA-RICHARDSI
AB Equine protozoal myeloencephalitis (EPM) is a serious disease of horses, and its management continues to be a challenge for veterinarians. The protozoan Sarcocystis neurona is most commonly associated with EPM. S. neurona has emerged as a common cause of mortality in marine mammals, especially sea otters (Enhydra lutris). EPM-like illness has also been recorded in several other mammals, including domestic dogs and cats. This paper updates S. neurona and EPM information from the last 15 years on the advances regarding life cycle, molecular biology, epidemiology, clinical signs, diagnosis, treatment and control. Published by Elsevier B.V.
C1 [Dubey, J. P.] ARS, USDA, Anim Parasit Dis Lab, Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
[Howe, D. K.] Univ Kentucky, Dept Vet Sci, MH Gluck Equine Res Ctr, Lexington, KY 40546 USA.
[Furr, M.] Virginia Maryland Reg Coll Vet Med, Marion du Pont Scott Equine Med Ctr, Leesburg, VA 20176 USA.
[Saville, W. J.; Marsh, A. E.] Ohio State Univ, Dept Vet Prevent Med, Columbus, OH 43210 USA.
[Reed, S. M.] Rood & Riddle Equine Hosp, Lexington, KY 40511 USA.
[Grigg, M. E.] NIAID, Mol Parasitol Sect, Parasit Dis Lab, NIH, Bethesda, MD 20892 USA.
RP Dubey, JP (reprint author), ARS, USDA, Anim Parasit Dis Lab, Beltsville Agr Res Ctr, Bldg 1001, Beltsville, MD 20705 USA.
EM Jitender.dubey@ars.usda.gov
FU NIAID/Division of Intramural Research
FX This research was partially funded by the NIAID/Division of Intramural
Research to MEG. MEG is a scholar of the Integrated Microbial
Biodiversity program of the Canadian Institute for Advanced Research
(CIFAR). We are grateful for S.K. Verma and R. Calero-Bernal for their
help with illustrations and to O.C.H. Kwok and Ana Beatriez Cassinelli
for bibliography.
NR 280
TC 10
Z9 11
U1 8
U2 42
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0304-4017
EI 1873-2550
J9 VET PARASITOL
JI Vet. Parasitol.
PD APR 15
PY 2015
VL 209
IS 1-2
BP 1
EP 42
DI 10.1016/j.vetpar.2015.01.026
PG 42
WC Parasitology; Veterinary Sciences
SC Parasitology; Veterinary Sciences
GA CG9AX
UT WOS:000353607900001
PM 25737052
ER
PT J
AU Nguyen, LM
Scherr, RE
Linnell, JD
Ermakov, IV
Gellermann, W
Jahns, L
Keen, CL
Miyamoto, S
Steinberg, FM
Young, HM
Zidenberg-Cherr, S
AF Nguyen, Lori M.
Scherr, Rachel E.
Linnell, Jessica D.
Ermakov, Igor V.
Gellermann, Werner
Jahns, Lisa
Keen, Carl L.
Miyamoto, Sheridan
Steinberg, Francene M.
Young, Heather M.
Zidenberg-Cherr, Sheri
TI Evaluating the relationship between plasma and skin carotenoids and
reported dietary intake in elementary school children to assess fruit
and vegetable intake
SO ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
LA English
DT Article
DE Carotenoids; Raman spectroscopy; Validation; Dietary assessment;
Biomarkers
ID RESONANCE RAMAN-SPECTROSCOPY; BIOMARKER; ADOLESCENTS; VALIDATION;
INTERVENTION; ANTIOXIDANTS; QUESTIONNAIRE; CONSUMPTION; OVERWEIGHT
AB Accurate assessment of dietary intake of children can be challenging due to the limited reliability of current dietary assessment methods. Plasma carotenoid concentration has been used to assess fruit and vegetable intake, but this testing is rarely conducted in school settings in children. Resonance Raman spectroscopy (RRS) is emerging as a useful method to objectively assess fruit and vegetable intake. This methodology has been validated in adults, but limited work has been done in children, particularly in the school setting. The purpose of this research is to further validate the RRS methodology in children. Children (9-12 year) participating in a school-based intervention were recruited. Plasma carotenoids were quantified using HPLC, skin carotenoid status was measured using RRS, and dietary intake of carotenoids was measured with the Block Food Frequency Questionnaire Ages 8-17. Total plasma carotenoid concentrations and skin carotenoid intensities were strongly correlated (r = 0.62, p < 0.001, n = 38). Reported total carotenoid intake correlated with skin carotenoids (r = 0.40, p < 0.0001, n = 128). Skin carotenoid status as measured by RRS can be a strong predictor of plasma carotenoid status and dietary intake of carotenoids in children. RRS may be used as a valid, non-invasive, and useful method to assess fruit and vegetable intakes in this population. (C) 2015 Elsevier Inc. All rights reserved.
C1 [Nguyen, Lori M.; Scherr, Rachel E.; Linnell, Jessica D.; Keen, Carl L.; Steinberg, Francene M.; Zidenberg-Cherr, Sheri] Univ Calif Davis, Dept Nutr, Davis, CA 95616 USA.
[Nguyen, Lori M.; Scherr, Rachel E.; Linnell, Jessica D.; Zidenberg-Cherr, Sheri] Ctr Nutr Sch, San Francisco, CA USA.
[Ermakov, Igor V.; Gellermann, Werner] Univ Utah, Dept Phys & Astron, Salt Lake City, UT 84112 USA.
[Jahns, Lisa] USDA ARS, Grand Forks, ND USA.
[Keen, Carl L.] Univ Calif Davis, Dept Internal Med, Davis, CA 95616 USA.
[Miyamoto, Sheridan; Young, Heather M.] Univ Calif Davis, Betty Irene Moore Sch Nursing, Davis, CA 95616 USA.
[Zidenberg-Cherr, Sheri] Univ Calif Cooperat Extens, Univ Calif Agr & Nat Resources, Davis, CA USA.
RP Scherr, RE (reprint author), Univ Calif Davis, One Shields Ave, Davis, CA 95616 USA.
EM lmnguyen@ucdavis.edu; rescherr@ucdavis.edu; ermakov@physics.utah.edu;
werner@physics.utah.edu; Lisadahns@ars.usda.gov; clkeen@ucdavis.edu;
sheridan.miyamoto@ucdmc.ucdavis.edu; fmsteinberg@ucdavis.edu;
heather.young@ucdmc.ucdavis.edu; sazidenbergcherr@ucdavis.edu
FU University of California Agriculture and Natural Resources Competitive
Grant [11-1018]; United States Department of Agriculture Cooperative
State Research, Education, and Extension Service Fellowship
[2011-38420-20082]; Henry A. Jastro Research Award; Kosuna Doctoral
Fellowship; Campbell Research and Travel Award; Barbara Schneeman
Research and Travel Award
FX Funding was provided by University of California Agriculture and Natural
Resources Competitive Grant #11-1018 and United States Department of
Agriculture Cooperative State Research, Education, and Extension Service
Fellowship #2011-38420-20082. Additional funding was provided by the
Henry A. Jastro Research Award, Kosuna Doctoral Fellowship, Campbell
Research and Travel Award, and Barbara Schneeman Research and Travel
Award. The sponsoring agencies have no role in study design, data
collection, or subsequent analyses. The authors would like to thank all
of the students, parents, and registered nurses participating in the
study, and the school and district administration for their assistance.
In addition, the authors would like to acknowledge Jodi Ensunsa and
Reedmond Fong for their assistance in HPLC data analysis and the many
undergraduate interns for their assistance in data collection and entry.
NR 29
TC 2
Z9 2
U1 0
U2 7
PU ELSEVIER SCIENCE INC
PI NEW YORK
PA 360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA
SN 0003-9861
EI 1096-0384
J9 ARCH BIOCHEM BIOPHYS
JI Arch. Biochem. Biophys.
PD APR 15
PY 2015
VL 572
SI SI
BP 73
EP 80
DI 10.1016/j.abb.2015.02.015
PG 8
WC Biochemistry & Molecular Biology; Biophysics
SC Biochemistry & Molecular Biology; Biophysics
GA CG5XJ
UT WOS:000353368900012
PM 25765187
ER
PT J
AU Stice, CP
Liu, C
Aizawa, K
Greenberg, AS
Ausman, LM
Wang, XD
AF Stice, Camilla P.
Liu, Chun
Aizawa, Koichi
Greenberg, Andrew S.
Ausman, Lynne M.
Wang, Xiang-Dong
TI Dietary tomato powder inhibits alcohol-induced hepatic injury by
suppressing cytochrome p450 2E1 induction in rodent models
SO ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
LA English
DT Article
DE Tomato; Lycopene; CYP2E1; Alcohol; Liver disease
ID ENDOPLASMIC-RETICULUM STRESS; PROSTATE-CANCER; LIVER-DISEASE;
HEPATOCELLULAR-CARCINOMA; OXIDATIVE STRESS; CHRONIC ETHANOL; FED RATS;
LYCOPENE; CARCINOGENESIS; PRODUCTS
AB Chronic and excessive alcohol consumption leads to the development of alcoholic liver disease (ALD) and greatly increases the risk of liver cancer. Induction of the cytochrome p450 2E1 (CYP2E1) enzyme by chronic and excessive alcohol intake is known to play a role in the pathogenesis of ALD. High intake of tomatoes, rich in the carotenoid lycopene, is associated with a decreased risk of chronic disease. We investigated the effects of whole tomato (tomato powder, TP), partial tomato (tomato extract, TE), and purified lycopene (LYC) against ALD development in rats. Of the three supplements, only TP reduced the severity of alcohol-induced steatosis, hepatic inflammatory foci, and CYP2E1 protein levels. TE had no effect on these outcomes and LYC greatly increased inflammatory foci in alcohol-fed rats. To further support the protective effect of TP against ALD, TP was supplemented in a carcinogen (diethylnitrosamine, DEN)-initiated alcohol-promoted mouse model. In addition to reduced steatosis and inflammatory foci, TP abolished the presence of preneoplastic foci of altered hepatocytes in DEN-injected mice fed alcohol. These reductions were associated with decreased hepatic CYP2E1 protein levels, restored levels of peroxisome proliferator-activated receptor-a and downstream gene expression, decreased inflammatory gene expression, and reduced endoplasmic reticulum stress markers. These data provide strong evidence for TP as an effective whole food prevention strategy against ALD. (C) 2015 Elsevier Inc. All rights reserved.
C1 [Stice, Camilla P.; Liu, Chun; Aizawa, Koichi; Ausman, Lynne M.; Wang, Xiang-Dong] Tufts Univ, Nutr & Canc Biol Lab, Jean Mayer USDA, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Greenberg, Andrew S.] Tufts Univ, Obes & Metab Lab, Jean Mayer USDA, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Stice, Camilla P.; Greenberg, Andrew S.; Ausman, Lynne M.; Wang, Xiang-Dong] Tufts Univ, Friedman Sch Nutr Sci & Policy, Boston, MA 02111 USA.
RP Wang, XD (reprint author), Tufts Univ, Nutr & Canc Biol Lab, Jean Mayer USDA, Human Nutr Res Ctr Aging, 711 Washington St,Room 514, Boston, MA 02111 USA.
EM xiang-dong.wang@tufts.edu
FU USDA/ARS CRIS grant [1950-51000-074S]; NIH/NCI [CA176256]
FX This study was supported by the USDA/ARS CRIS grant 1950-51000-074S and
NIH/NCI CA176256 grant. Any opinions, findings, conclusions, and
recommendations expressed in this publication are those of the author(s)
and do not necessarily reflect the views of the sponsors. The authors
would like to thank Dr. Donald Smith for his assistance in designing and
conducting the animal protocols included in this manuscript. The authors
would also like to thank Junrui Cheng for her assistance on this
manuscript.
NR 38
TC 3
Z9 3
U1 1
U2 11
PU ELSEVIER SCIENCE INC
PI NEW YORK
PA 360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA
SN 0003-9861
EI 1096-0384
J9 ARCH BIOCHEM BIOPHYS
JI Arch. Biochem. Biophys.
PD APR 15
PY 2015
VL 572
SI SI
BP 81
EP 88
DI 10.1016/j.abb.2015.01.004
PG 8
WC Biochemistry & Molecular Biology; Biophysics
SC Biochemistry & Molecular Biology; Biophysics
GA CG5XJ
UT WOS:000353368900013
PM 25592162
ER
PT J
AU Pereira, EI
da Cruz, CCT
Solomon, A
Le, A
Cavigelli, MA
Ribeiro, C
AF Pereira, Elaine I.
da Cruz, Camila C. T.
Solomon, Aaron
Le, Anh
Cavigelli, Michel A.
Ribeiro, Caue
TI Novel Slow-Release Nanocomposite Nitrogen Fertilizers: The Impact of
Polymers on Nanocomposite Properties and Function
SO INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH
LA English
DT Article
ID GREENHOUSE-GAS EMISSIONS; UREA FERTILIZER; OXIDE; AMMONIA; URINE; FORMS;
SOIL
AB Efficient use of fertilizers, especially nitrogen, is essential and strategic to agricultural production. Among the technologies that can contribute to efficient use of fertilizers are slow- or controlled-release products. This study describes the impact on structure, urea release rate, and function in the field of urea nanocomposites associated with an exfoliated clay mineral prepared using various concentrations of hydrophilic or hydrophobic polymers. The nanocomposites have a high nutrient load (75% by weight), which itself acts as a structural matrix. Our manufacturing process-the extrusion of a plastic mixture-is simple and can be scaled up, allowing granule production without high costs. Nanocomposites were prepared by adding varying amounts (less than 4% by weight) of polyacrylamide hydrogel or polycaprolactone, which influenced mechanical properties and urea release profiles. Nitrous oxide (N2O) emissions in the field were reduced substantially for nanocomposites, whether composed of polyacrylamide hydrogel or polycaprolactone.
C1 [Pereira, Elaine I.; da Cruz, Camila C. T.; Ribeiro, Caue] EMBRAPA Instrumentat, BR-13560970 Sao Paulo, Brazil.
[Pereira, Elaine I.; da Cruz, Camila C. T.] Univ Fed Sao Carlos, Dept Chem, BR-13565905 Sao Paulo, Brazil.
[Solomon, Aaron] Univ Maryland, College Pk, MD 20742 USA.
[Le, Anh; Cavigelli, Michel A.] USDA ARS, Sustainable Agr Syst Lab, Henry A Wallace Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
RP Ribeiro, C (reprint author), EMBRAPA Instrumentat, 1452 15 Novembro St, BR-13560970 Sao Paulo, Brazil.
EM caue.ribeiro@embrapa.br
RI Ribeiro, Caue/F-3511-2010
OI Ribeiro, Caue/0000-0002-8908-6343
FU CNPq; CAPES (Program Science with No Borders); FAPESP; FAPED; FINEP;
Rede Agronano-Embrapa; United States Department of Agriculture,
Agricultural Research Service under the ARS GRACEnet Project
FX The authors thank CNPq, CAPES (Program Science with No Borders), FAPESP,
FAPED, FINEP, and Rede Agronano-Embrapa for their financial support.
This publication is based upon work supported by the United States
Department of Agriculture, Agricultural Research Service under the ARS
GRACEnet Project.
NR 31
TC 5
Z9 5
U1 10
U2 58
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0888-5885
J9 IND ENG CHEM RES
JI Ind. Eng. Chem. Res.
PD APR 15
PY 2015
VL 54
IS 14
BP 3717
EP 3725
DI 10.1021/acs.iecr.5b00176
PG 9
WC Engineering, Chemical
SC Engineering
GA CG3JZ
UT WOS:000353177800022
ER
PT J
AU Chen, WG
Liu, Y
Li, HX
Chang, S
Shu, DM
Zhang, HM
Chen, F
Xie, QM
AF Chen, Weiguo
Liu, Yang
Li, Hongxing
Chang, Shuang
Shu, Dingming
Zhang, Huanmin
Chen, Feng
Xie, Qingmei
TI Intronic deletions of tva receptor gene decrease the susceptibility to
infection by avian sarcoma and leukosis virus subgroup A
SO Scientific Reports
LA English
DT Article
ID DENSITY-LIPOPROTEIN RECEPTOR; SPLICE-SITE MUTATION; FAMILIAL
HYPERCHOLESTEROLEMIA; CELLULAR RECEPTOR; MEMBRANE-FUSION; BRANCH POINT;
DISEASE; RESISTANCE; MECHANISMS; CHICKENS
AB The group of avian sarcoma and leukosis virus (ASLV) in chickens contains six highly related subgroups, A to E and J. Four genetic loci, tva, tvb, tvc and tvj, encode for corresponding receptors that determine the susceptibility to the ASLV subgroups. The prevalence of ASLV in hosts may have imposed strong selection pressure toward resistance to ASLV infection, and the resistant alleles in all four receptor genes have been identified. In this study, two new alleles of the tva receptor gene, tva(r5) and tva(r6), with similar intronic deletions were identified in Chinese commercial broilers. These natural mutations delete the deduced branch point signal within the first intron, disrupting mRNA splicing of the tva receptor gene and leading to the retention of intron 1 and introduction of premature TGA stop codons in both the longer and shorter tva isoforms. As a result, decreased susceptibility to subgroup A ASLV in vitro and in vivo was observed in the subsequent analysis. In addition, we identified two groups of heterozygous allele pairs which exhibited quantitative differences in host susceptibility to ASLV-A. This study demonstrated that defective splicing of the tva receptor gene can confer genetic resistance to ASLV subgroup A in the host.
C1 [Chen, Weiguo; Liu, Yang; Li, Hongxing; Chen, Feng; Xie, Qingmei] South China Agr Univ, Coll Anim Sci, Guangzhou 510642, Guangdong, Peoples R China.
[Chen, Weiguo; Liu, Yang; Li, Hongxing; Chen, Feng; Xie, Qingmei] Guangdong Prov Key Lab Agroanim Genom & Mol Breed, Guangzhou 510642, Guangdong, Peoples R China.
[Chang, Shuang] Shandong Agr Univ, Coll Vet Med, Tai An 271018, Shandong, Peoples R China.
[Shu, Dingming] Guangdong Acad Agr Sci, Inst Anim Sci, Guangzhou 510640, Guangdong, Peoples R China.
[Zhang, Huanmin] USDA ARS, Avian Dis & Oncol Lab, E Lansing, MI 48823 USA.
[Xie, Qingmei] Key Lab Anim Hlth Aquaculture & Environm Control, Guangzhou 510642, Guangdong, Peoples R China.
[Chen, Feng; Xie, Qingmei] South China Collaborat Innovat Ctr Poultry Dis Co, Guangzhou 510642, Guangdong, Peoples R China.
RP Xie, QM (reprint author), South China Agr Univ, Coll Anim Sci, Guangzhou 510642, Guangdong, Peoples R China.
EM qmx@scau.edu.cn
FU Natural Science Foundation of Guangdong Province [S2013030013313];
National Modern Agricultural Industry Technology System Project of China
[CARS-41]; Guangdong Province Science and technology plan project
[2012B020306002, 2012B091100078]
FX We thank Guangdong Wen's Food Group Co., Ltd., Guangdong, China, for
providing the commercial broiler lines 202, 203, 204, 205, 207, 208,
209, 301, 306, 406, 407, 408, 411, 413, 417, 418, 419, 501, 502, 505,
511, 603 samples, and Stephen H. Hughes from HIV Drug Resistance
Program, National Cancer Institute, USA, for providing the Cla12Nco
adapter plasmid and RCASBP(A) vector, as well as Weisheng Cao at South
China Agricultural University, P R. China, for providing the avian
leukosis virus subgroup A strain GD08. This study was supported by the
Natural Science Foundation of Guangdong Province (Grant No.
S2013030013313), National Modern Agricultural Industry Technology System
Project of China (CARS-41) and Guangdong Province Science and technology
plan project (Grant No. 2012B020306002 and Grant No. 2012B091100078).
NR 59
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U1 3
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PU NATURE PUBLISHING GROUP
PI LONDON
PA MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
SN 2045-2322
J9 SCI REP-UK
JI Sci Rep
PD APR 15
PY 2015
VL 5
AR 9900
DI 10.1038/srep09900
PG 9
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CG4QP
UT WOS:000353271700001
PM 25873518
ER
PT J
AU Cui, LH
Ouyang, Y
Yang, WZ
Huang, ZJ
Xu, QL
Yu, GW
AF Cui, Lihua
Ouyang, Ying
Yang, Weizhi
Huang, Zhujian
Xu, Qiaoling
Yu, Guangwei
TI Removal of nutrients from septic tank effluent with baffle
subsurface-flow constructed wetlands
SO JOURNAL OF ENVIRONMENTAL MANAGEMENT
LA English
DT Article
DE Constructed wetland; Baffle flow; Nutrient removal; Septic tank effluent
ID WASTE-WATER TREATMENT; 10 YEARS EXPERIENCE; NITROGEN REMOVAL;
SEWAGE-TREATMENT; SYSTEMS
AB Three new baffle flow constructed wetlands (CWs), namely the baffle horizontal flow CW (Z1), baffle vertical flow CW (Z2) and baffle hybrid flow CW (Z3), along with one traditional horizontal subsurface flow CW (Z4) were designed to test the removal efficiency of nitrogen (N) and phosphorus (P) from the septic tank effluent under varying hydraulic retention times (HRTs). Results showed that the optimal HRT was two days for maximal removal of N and P from the septic tank effluent among the four CWs. At this HRT, the Z1, Z2, Z3 and Z4 CWs removed, respectively, 49.93, 58.50, 46.01 and 44.44% of TN as well as 87.82, 93.23, 95.97 and 9130% of TP. Our study further revealed that the Z3 CW was the best design for overall removal of N and P from the septic tank effluent due to its hybrid flow directions with better oxygen supply inside the CW system. (C) 2015 Elsevier Ltd. All rights reserved.
C1 [Cui, Lihua; Huang, Zhujian; Xu, Qiaoling; Yu, Guangwei] South China Agr Univ, Coll Nat Resource & Environm, Guangzhou 510642, Guangdong, Peoples R China.
[Ouyang, Ying] USDA, Forest Serv, Ctr Bottomland Hardwoods Res, Mississippi State, MS 39762 USA.
[Yang, Weizhi] Nanyang Technol Univ, Nanyang Environm & Water Res Inst, Singapore 637141, Singapore.
RP Cui, LH (reprint author), South China Agr Univ, Coll Nat Resource & Environm, Guangzhou 510642, Guangdong, Peoples R China.
EM Lihcui@scau.edu.cn
RI Huang, Zhujian/O-2404-2015
OI Huang, Zhujian/0000-0002-4448-4903
FU National Natural Science Foundation of China [41271245, 41071214];
Engineering Research Center for Wastewater Ecological Treatment and
Waterbody Remediation of Guangdong Higher Education Institutes
[2012gczxA1004]; Project of Science and Technology of Guangdong Province
[2010B031800007, 2012A020100003]; Project of Oceanic and Fisheries
Administrator of Guangdong Province [B201001C03]
FX The study was supported by the National Natural Science Foundation of
China (No.41271245; No.41071214), the Engineering Research Center for
Wastewater Ecological Treatment and Waterbody Remediation of Guangdong
Higher Education Institutes (No.2012gczxA1004), the Project of Science
and Technology of Guangdong Province (No. 2010B031800007,
2012A020100003), and the Project of Oceanic and Fisheries Administrator
of Guangdong Province (No. B201001C03).
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U2 46
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0301-4797
EI 1095-8630
J9 J ENVIRON MANAGE
JI J. Environ. Manage.
PD APR 15
PY 2015
VL 153
BP 33
EP 39
DI 10.1016/j.jenvman.2015.01.035
PG 7
WC Environmental Sciences
SC Environmental Sciences & Ecology
GA CE6UZ
UT WOS:000351975000004
PM 25646674
ER
PT J
AU Epps, SVR
Petrujkic, BT
Sedej, I
Krueger, NA
Harvey, RB
Beier, RC
Stanton, TB
Phillips, TD
Anderson, RC
Nisbet, DJ
AF Epps, Sharon V. R.
Petrujkic, Branko T.
Sedej, Ivana
Krueger, Nathan A.
Harvey, Roger B.
Beier, Ross C.
Stanton, Thad B.
Phillips, Timothy D.
Anderson, Robin C.
Nisbet, David J.
TI Comparison of anti-Campylobacter activity of free thymol and
thymol-beta-D-glucopyranoside in absence or presence of
beta-glycoside-hydrolysing gut bacteria
SO FOOD CHEMISTRY
LA English
DT Article
DE Campylobacter; Foodborne pathogen; Gut bacteria; Thymol;
Thymol-beta-D-glucopyranoside
ID IN-VITRO; ESSENTIAL OILS; DIPHENYLIODONIUM CHLORIDE; ANTIMICROBIAL
ACTIVITY; TRANS-CINNAMALDEHYDE; DOSE-RESPONSE; FERMENTATION; SALMONELLA;
CARVACROL; CULTURE
AB Thymol is a natural product that exhibits antimicrobial activity in vitro but in vivo results indicate that absorption within the proximal alimentary tract precludes its delivery to the distal gut. Presently, the anti-Campylobacter activity of thymol was compared against that of thymol-beta-D-glucopyranoside, the latter being resistant to absorption. When treated with 1 mM thymol, Campylobacter coli and jejuni were reduced during pure or co-culture with a beta-glycoside-hydrolysing Parabacteroides distasonis. Thymol-beta-D-glucopyranoside treatment (1 mM) did not reduce C coli and jejuni during pure culture but did during co-culture with P. distasonis or during mixed culture with porcine or bovine faecal microbes possessing beta-glycoside-hydrolysing activity. Fermentation acid production was reduced by thymol-beta-D-glucopyranoside treatment, indicating that fermentation was inhibited, which may limit its application to just before harvest. Results suggest that thymol-beta-D-glucopyranoside or similar beta-glycosides may be able to escape absorption within the proximal gut and become activated by bacterial beta-glycosidases in the distal gut. Published by Elsevier Ltd.
C1 [Epps, Sharon V. R.; Petrujkic, Branko T.; Sedej, Ivana; Krueger, Nathan A.; Harvey, Roger B.; Beier, Ross C.; Anderson, Robin C.; Nisbet, David J.] USDA ARS, Southern Plains Agr Res Ctr, Food & Feed Safety Res Unit, College Stn, TX 77845 USA.
[Epps, Sharon V. R.; Phillips, Timothy D.] Texas A&M Univ, Coll Vet Med, Vet Integrat Biosci, College Stn, TX 77843 USA.
[Petrujkic, Branko T.] Univ Belgrade, Fac Vet Med, Dept Nutr & Bot, Belgrade 11000, Serbia.
[Sedej, Ivana] Univ Novi Sad, Inst Food Technol, Novi Sad 21000, Serbia.
[Stanton, Thad B.] USDA ARS, Food Safety & Enter Pathogens Res Unit, Natl Anim Dis Ctr, Ames, IA 50010 USA.
RP Anderson, RC (reprint author), USDA ARS, Southern Plains Agr Res Ctr, Food & Feed Safety Res Unit, 2881 F&B Rd, College Stn, TX 77845 USA.
EM seballin2002@yahoo.com; petrujkic@yahoo.com; ivana.sedej@fins.uns.ac.rs;
nakrueger@gmail.com; roger.harvey@ars.usda.gov; ross.beier@yahoo.com;
thad.stanton@ars.usda.gov; tphillips@cvm.tamu.edu;
robin.anderson@ars.usda.gov; david.nisbet@ars.usda.gov
RI Grams, Michael/G-5197-2011
NR 29
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U1 4
U2 24
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0308-8146
EI 1873-7072
J9 FOOD CHEM
JI Food Chem.
PD APR 15
PY 2015
VL 173
BP 92
EP 98
DI 10.1016/j.foodchem.2014.10.007
PG 7
WC Chemistry, Applied; Food Science & Technology; Nutrition & Dietetics
SC Chemistry; Food Science & Technology; Nutrition & Dietetics
GA AY7RD
UT WOS:000347755800012
PM 25465999
ER
PT J
AU Sun, JH
Monagas, M
Jang, S
Molokin, A
Harnly, JM
Urban, JF
Solano-Aguilar, G
Chen, P
AF Sun, Jianghao
Monagas, Maria
Jang, Saebyeol
Molokin, Aleksey
Harnly, James M.
Urban, Joseph F., Jr.
Solano-Aguilar, Gloria
Chen, Pei
TI A high fat, high cholesterol diet leads to changes in metabolite
patterns in pigs - A metabolomic study
SO FOOD CHEMISTRY
LA English
DT Article
DE Metabolomics; Diet pattern; Ultra-high performance liquid
chromatography; High-resolution mass spectrometry
ID RATS; JUICE; HYPERLIPIDEMIA; CONSUMPTION; URINE; LIVER; MODEL; VIEW
AB Non-targeted metabolite profiling can identify biological markers of dietary exposure that lead to a better understanding of interactions between diet and health. In this study, pigs were used as an animal model to discover changes in metabolic profiles between regular basal and high fat/high cholesterol diets. Extracts of plasma, fecal and urine samples from pigs fed high fat or basal regular diets for 11 weeks were analysed using ultra-high performance liquid chromatography with high-resolution mass spectrometry (UHPLC-HRMS) and chemometric analysis. Cloud plots from XCMS online were used for class separation of the most discriminatory metabolites. The major metabolites contributing to the discrimination were identified as bile acids (BAs), lipid metabolites, fatty acids, amino acids and phosphatidic acid (PAs), phosphatidylglycerol (PGs), glycerophospholipids (PI), phosphatidylcholines (PCs) and tripeptides. These results suggest the developed approach can be used to identify biomarkers associated with specific feeding diets and possible metabolic disorders related to diet. Published by Elsevier Ltd.
C1 [Sun, Jianghao; Harnly, James M.; Chen, Pei] USDA ARS, Beltsville Human Nutr Res Ctr, Food Composit & Methods Dev Lab, Beltsville, MD 20705 USA.
[Monagas, Maria; Jang, Saebyeol; Molokin, Aleksey; Urban, Joseph F., Jr.; Solano-Aguilar, Gloria] USDA ARS, Beltsville Human Nutr Res Ctr, Diet Gen & Immunol Lab, Beltsville, MD 20705 USA.
RP Chen, P (reprint author), USDA ARS, Beltsville Human Nutr Res Ctr, Food Composit & Methods Dev Lab, Beltsville, MD 20705 USA.
EM pei.chen@ars.usda.gov
OI Urban, Joseph/0000-0002-1590-8869
FU Agricultural Research Service of the United States Department of
Agriculture; Office of Dietary Supplements (ODS) of the National
Institutes of Health (NIH)
FX This research is supported by the Agricultural Research Service of the
United States Department of Agriculture and an Interagency Agreement
with the Office of Dietary Supplements (ODS) of the National Institutes
of Health (NIH).
NR 28
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U1 5
U2 109
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0308-8146
EI 1873-7072
J9 FOOD CHEM
JI Food Chem.
PD APR 15
PY 2015
VL 173
BP 171
EP 178
DI 10.1016/j.foodchem.2014.09.161
PG 8
WC Chemistry, Applied; Food Science & Technology; Nutrition & Dietetics
SC Chemistry; Food Science & Technology; Nutrition & Dietetics
GA AY7RD
UT WOS:000347755800022
PM 25466009
ER
PT J
AU Benavides, MV
Sonstegard, TS
Kemp, S
Mugambi, JM
Gibson, JP
Baker, RL
Hanotte, O
Marshall, K
Van Tassell, C
AF Benavides, Magda Vieira
Sonstegard, Tad S.
Kemp, Stephen
Mugambi, John M.
Gibson, John P.
Baker, Robert Leyden
Hanotte, Olivier
Marshall, Karen
Van Tassell, Curtis
TI Identification of Novel Loci Associated with Gastrointestinal Parasite
Resistance in a Red Maasai x Dorper Backcross Population
SO PLOS ONE
LA English
DT Article
ID QUANTITATIVE TRAIT LOCI; HAEMONCHUS-CONTORTUS INFECTION; GENOME-WIDE
ASSOCIATION; NEMATODE PARASITES; MERINO SHEEP;
TRICHOSTRONGYLUS-COLUBRIFORMIS; GENETIC-VARIATION; LIVEWEIGHT GAIN;
BODY-WEIGHT; EGG COUNT
AB Gastrointestinal (GI) parasitic infection is the main health constraint for small ruminant production, causing loss of weight and/or death. Red Maasai sheep have adapted to a tropical environment where extreme parasite exposure is a constant, especially with highly pathogenic Haemonchus contortus. This breed has been reported to be resistant to gastrointestinal parasite infection, hence it is considered an invaluable resource to study associations between host genetics and resistance. The aim of this study was to identify polymorphisms strongly associated with host resistance in a double backcross population derived from Red Maasai and Dorper sheep using a SNP-based GWAS analysis. The animals that were genotyped represented the most resistant and susceptible individuals based on the tails of phenotypic distribution (10% each) for average faecal egg counts (AVFEC). AVFEC, packed cell volume (AVPCV), and live weight (AVLWT) were adjusted for fixed effects and co-variables, and an association analysis was run using EMMAX. Revised significance levels were calculated using 100,000 permutation tests. The top five significant SNP markers with - log10 p-values >3.794 were observed on five different chromosomes for AVFEC, and BLUPPf90/PostGSf90 results confirmed EMMAX significant regions for this trait. One of these regions included a cluster of significant SNP on chromosome (Chr) 6 not in linkage disequilibrium to each other. This genomic location contains annotated genes involved in cytokine signalling, haemostasis and mucus biosynthesis. Only one association detected on Chr 7 was significant for both AVPCV and AVLWT. The results generated here reveal candidate immune variants for genes involved in differential response to infection and provide additional SNP marker information that has potential to aid selection of resistance to gastrointestinal parasites in sheep of a similar genetic background to the double backcross population.
C1 [Benavides, Magda Vieira] EMBRAPA, LabEx USA, Brasilia, DF, Brazil.
[Sonstegard, Tad S.; Van Tassell, Curtis] USDA ARS, Beltsville Agr Res Ctr, Anim Genom & Improvement Lab, Beltsville, MD 20705 USA.
[Kemp, Stephen; Marshall, Karen] ILRI, Anim Biosci, Nairobi, Kenya.
[Mugambi, John M.] KARI, Natl Vet Res Ctr, Muguga, Kenya.
[Gibson, John P.] Univ New England, Ctr Genet Anal & Applicat, Armidale, NSW, Australia.
[Baker, Robert Leyden] Whangamata, Waikato, New Zealand.
[Hanotte, Olivier] Univ Nottingham, Med & Hlth Sci, Nottingham NG7 2RD, England.
RP Benavides, MV (reprint author), EMBRAPA, LabEx USA, Brasilia, DF, Brazil.
EM magda.benavides@embrapa.br
RI Benavides, M/F-6643-2015;
OI Benavides, M/0000-0002-0219-3163; kemp, stephen/0000-0003-4041-1720;
Gibson, John/0000-0003-0371-2401
FU Embrapa; USDA Agricultural Research Service [1265-31000-093-00D]
FX Embrapa funded DNA genotyping and data analysis, and supported MB at the
Embrapa LabEx programme; Research project 1265-31000-093-00D (AGIL) from
the USDA Agricultural Research Service funded CVT and TSS; CVT will
cover PLOS ONE submission fees. The funders had no role in study design,
data collection and analysis, decision to publish, or preparation of the
manuscript.
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U1 0
U2 10
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 13
PY 2015
VL 10
IS 4
AR UNSP e0122797
DI 10.1371/journal.pone.0122797
PG 20
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CF8XK
UT WOS:000352845100101
PM 25867089
ER
PT J
AU Rubinstein, M
Katzenellenbogen, M
Eshed, R
Rozen, A
Katzir, N
Colle, M
Yang, LM
Grumet, R
Weng, YQ
Sherman, A
Ophir, R
AF Rubinstein, Mor
Katzenellenbogen, Mark
Eshed, Ravit
Rozen, Ada
Katzir, Nurit
Colle, Marivi
Yang, Luming
Grumet, Rebecca
Weng, Yiqun
Sherman, Amir
Ophir, Ron
TI Ultrahigh-Density Linkage Map for Cultivated Cucumber (Cucumis sativus
L.) Using a Single-Nucleotide Polymorphism Genotyping Array
SO PLOS ONE
LA English
DT Article
ID RECOMBINANT INBRED LINES; SEGREGATION DISTORTION; ARABIDOPSIS-THALIANA;
GENE CONVERSION; ORYZA-SATIVA; QTL ANALYSIS; GENOME; TRAITS; DNA;
EVOLUTION
AB Genotyping arrays are tools for high-throughput genotyping, which is beneficial in constructing saturated genetic maps and therefore high-resolution mapping of complex traits. Since the report of the first cucumber genome draft, genetic maps have been constructed mainly based on simple-sequence repeats (SSRs) or on combinations of SSRs and sequence-related amplified polymorphism (SRAP). In this study, we developed the first cucumber genotyping array consisting of 32,864 single-nucleotide polymorphisms (SNPs). These markers cover the cucumber genome with a median interval of similar to 2 Kb and have expected genotype calls in parents/F-1 hybridizations as a training set. The training set was validated with Fluidigm technology and showed 96% concordance with the genotype calls in the parents/F-1 hybridizations. Application of the genotyping array was illustrated by constructing a 598.7 cM genetic map based on a '9930' x 'Gy14' recombinant inbred line (RIL) population comprised of 11,156 SNPs. Marker collinearity between the genetic map and reference genomes of the two parents was estimated at R-2 = 0.97. We also used the array-derived genetic map to investigate chromosomal rearrangements, regional recombination rate, and specific regions with segregation distortions. Finally, 82% of the linkage-map bins were polymorphic in other cucumber variants, suggesting that the array can be applied for genotyping in other lines. The genotyping array presented here, together with the genotype calls of the parents/F-1 hybridizations as a training set, should be a powerful tool in future studies with high-throughput cucumber genotyping. An ultrahigh-density linkage map constructed
C1 [Rubinstein, Mor; Katzenellenbogen, Mark; Eshed, Ravit; Rozen, Ada; Sherman, Amir; Ophir, Ron] Agr Res Org, Dept Fruit Trees Sci, Inst Plant Sci, Volcani Ctr, Rishon Le Zion, Israel.
[Katzir, Nurit] Agr Res Org, Dept Fruit Trees Sci, Inst Plant Sci, Newe Yaar Ctr, Ramat Yishai, Israel.
[Katzenellenbogen, Mark] Hebrew Univ Jerusalem, Robert H Smith Inst Plant Sci & Genet Agr, Fac Agr Food & Environm, IL-76100 Rehovot, Israel.
[Colle, Marivi; Grumet, Rebecca] Michigan State Univ, Dept Hort, Plant Breeding Genet Genom & Biotechnol, E Lansing, MI 48824 USA.
[Yang, Luming; Weng, Yiqun] Univ Wisconsin, Dept Hort, Madison, WI 53706 USA.
[Weng, Yiqun] USDA ARS, Vegetable Crops Res Unit, Madison, WI USA.
RP Ophir, R (reprint author), Agr Res Org, Dept Fruit Trees Sci, Inst Plant Sci, Volcani Ctr, Rishon Le Zion, Israel.
EM ron@agri.gov.il
FU U.S.-Israel Binational Agricultural Research and Development (BARD) fund
[IS-4341-10]; U.S. Department of Agriculture Specialty Crop Research
Initiative grant [2011-51181-30661]
FX This research was jointly funded by a U.S.-Israel Binational
Agricultural Research and Development (BARD) fund (grant no.
IS-4341-10). Work in Yiqun Weng's lab was partially supported by a U.S.
Department of Agriculture Specialty Crop Research Initiative grant
(project no. 2011-51181-30661). The funders had no role in study design,
data collection and analysis, decision to publish, or preparation of the
manuscript.
NR 62
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U1 1
U2 21
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 13
PY 2015
VL 10
IS 4
AR UNSP e0124101
DI 10.1371/journal.pone.0124101
PG 19
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CF8XK
UT WOS:000352845100239
PM 25874931
ER
PT J
AU Haney, RL
Jin, VL
Johnson, MVV
White, MJ
Arnold, JG
AF Haney, Richard L.
Jin, Virginia L.
Johnson, Mari-Vaughn V.
White, Michael J.
Arnold, Jeffrey G.
TI On-Site Assessment of Extractable Soil Nutrients after Long-Term
Biosolid Applications to Perennial Forage
SO COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
LA English
DT Article
DE class B biosolids; application rate; surface application; NPK;
Application duration
ID SUSTAINABLE LAND APPLICATION; SEWAGE-SLUDGE; TALL FESCUE; NITROGEN
MINERALIZATION; PHOSPHORUS; RUNOFF; PLANT; AGROECOSYSTEMS;
FRACTIONATION; BERMUDAGRASS
AB The objective of this study was to evaluate soil nutrient loading and depth distributions of extractable nitrogen (N), phosphorus (P), and potassium (K) after long-term, continuous annual surface applications of anaerobically digested class B biosolids at a municipal recycling facility in central Texas. Commercial forage production fields of coastal bermudagrass (Cynodon dactylon L.) were surface applied at 0, 20, 40, or 60Mg dry biosolids ha(-1)y(-1) for 8years. Application duration was evaluated in fields treated with 20Mg dry biosolids ha(-1)y(-1) for 0, 8, or 20years. Total soil loads of extractable inorganic N and P increased linearly with application rate, but only extractable P increased with duration. Neither total load nor soil distribution of extractable K was affected by biosolid applications. Mineralization of biosolid-derived organic N and P likely contributed to elevated concentrations of nitrate throughout the soil profile (0-110cm) and orthophosphate in surface soils (0-40cm).
C1 [Haney, Richard L.; White, Michael J.; Arnold, Jeffrey G.] ARS, USDA, Temple, TX USA.
[Jin, Virginia L.] ARS, USDA, Lincoln, NE USA.
[Johnson, Mari-Vaughn V.] Nat Resources Conservat Serv, USDA, Temple, TX USA.
RP Jin, VL (reprint author), Univ Nebraska, 137 Keim Hall,East Campus, Lincoln, NE 68583 USA.
EM Virginia.Jin@ars.usda.gov
FU USDA-CSREES National Research Initiative Managed Ecosystems Program
[2008-35101-04440]
FX This research was supported by a grant from the USDA-CSREES National
Research Initiative Managed Ecosystems Program (Award No.
2008-35101-04440 to JGA).
NR 55
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U1 5
U2 14
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 0010-3624
EI 1532-2416
J9 COMMUN SOIL SCI PLAN
JI Commun. Soil Sci. Plant Anal.
PD APR 12
PY 2015
VL 46
IS 7
BP 889
EP 903
DI 10.1080/00103624.2015.1011751
PG 15
WC Agronomy; Plant Sciences; Chemistry, Analytical; Soil Science
SC Agriculture; Plant Sciences; Chemistry
GA CF1HK
UT WOS:000352295300006
ER
PT J
AU Mazumdar, M
Hasan, MOSI
Hamid, R
Valeri, L
Paul, L
Selhub, J
Rodrigues, EG
Silva, F
Mia, S
Mostofa, MG
Quamruzzaman, Q
Rahman, M
Christiani, DC
AF Mazumdar, Maitreyi
Hasan, Md Omar Sharif Ibne
Hamid, Rezina
Valeri, Linda
Paul, Ligi
Selhub, Jacob
Rodrigues, Ema G.
Silva, Fareesa
Mia, Selim
Mostofa, Md Golam
Quamruzzaman, Quazi
Rahman, Mahmuder
Christiani, David C.
TI Arsenic is associated with reduced effect of folic acid in
myelomeningocele prevention: a case control study in Bangladesh
SO ENVIRONMENTAL HEALTH
LA English
DT Article
DE Arsenic; Neural tube defect; Myelomeningocele; Birth defect; Folate
deficiency
ID NEURAL-TUBE DEFECTS; DRINKING-WATER; BIRTH-DEFECTS; RISK; EXPOSURE;
OBESITY; SUPPLEMENTATION; PREGNANCY; INFANTS; PROGRAM
AB Background: Arsenic induces neural tube defects in several animal models, but its potential to cause neural tube defects in humans is unknown. Our objective was to investigate the associations between maternal arsenic exposure, periconceptional folic acid supplementation, and risk of posterior neural tube defect (myelomeningocele) among a highly exposed population in rural Bangladesh.
Methods: We performed a case-control study that recruited physician-confirmed cases from community health clinics served by Dhaka Community Hospital in Bangladesh, as well as local health facilities that treat children with myelomeningocele. Controls were selected from pregnancy registries in the same areas. Maternal arsenic exposure was estimated from drinking water samples taken from wells used during the first trimester of pregnancy. Periconceptional folic acid use was ascertained by self-report, and maternal folate status was further assessed by plasma folate levels measured at the time of the study visit.
Results: Fifty-seven cases of myelomeningocele were identified along with 55 controls. A significant interaction was observed between drinking water inorganic arsenic and periconceptional folic acid use. As drinking water inorganic arsenic concentrations increased from 1 to 25 mu g/L, the estimated protective effect of folic acid use declined (OR 0.22 to 1.03), and was not protective at higher concentrations of arsenic. No main effect of arsenic exposure on myelomeningocele risk was identified.
Conclusions: Our study found a significant interaction between drinking water inorganic arsenic concentration from wells used during the first trimester of pregnancy and reported intake of periconceptional folic acid supplements. Results suggest that environmental arsenic exposure reduces the effectiveness of folic acid supplementation in preventing myelomeningocele.
C1 [Mazumdar, Maitreyi; Rodrigues, Ema G.; Silva, Fareesa] Boston Childrens Hosp, Dept Neurol, Boston, MA 02115 USA.
[Mazumdar, Maitreyi; Rodrigues, Ema G.; Christiani, David C.] Harvard Univ, Sch Publ Hlth, Dept Environm Hlth, Boston, MA 02115 USA.
[Hasan, Md Omar Sharif Ibne; Mia, Selim; Mostofa, Md Golam; Quamruzzaman, Quazi; Rahman, Mahmuder] Dhaka Community Hosp, Dhaka 1217, Bangladesh.
[Hamid, Rezina] Bangladesh Med Coll, Dhaka 1209, Bangladesh.
[Valeri, Linda] Harvard Univ, Sch Publ Hlth, Dept Biostat, Boston, MA 02115 USA.
[Paul, Ligi; Selhub, Jacob] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
RP Mazumdar, M (reprint author), Boston Childrens Hosp, Dept Neurol, 300 Longwood Ave, Boston, MA 02115 USA.
EM maitreyi.mazumdar@childrens.harvard.edu
FU Child Neurology Foundation; Harvard School of Public Health NIEHS Center
[ES000002]; Mentored Career Development Award from NIEHS, National
Institutes of Health [K23 ES017437]; NIEHS grant [P42 ES16454]
FX Funding for this study was provided by the Child Neurology Foundation
and the Harvard School of Public Health NIEHS Center (ES000002). Dr.
Mazumdar was supported by a Mentored Career Development Award from the
NIEHS, National Institutes of Health (K23 ES017437). Additional support
was provided by NIEHS grant P42 ES16454.
NR 41
TC 2
Z9 2
U1 1
U2 6
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1476-069X
J9 ENVIRON HEALTH-GLOB
JI Environ. Health
PD APR 10
PY 2015
VL 14
AR 34
DI 10.1186/s12940-015-0020-0
PG 8
WC Environmental Sciences; Public, Environmental & Occupational Health
SC Environmental Sciences & Ecology; Public, Environmental & Occupational
Health
GA CG1DU
UT WOS:000353014000001
PM 25885259
ER
PT J
AU Weimer, PJ
AF Weimer, Paul J.
TI Redundancy, resilience, and host specificity of the ruminal microbiota:
implications for engineering improved ruminal fermentations
SO FRONTIERS IN MICROBIOLOGY
LA English
DT Review
DE fermentation; host specificity; redundancy; resilience; rumen
ID LACTATING DAIRY-COWS; BACTERIAL COMMUNITY COMPOSITION; REAL-TIME PCR;
MICROORGANISMS IN-VITRO; DRIED DISTILLERS GRAINS; RUMEN BACTERIA; BOVINE
RUMEN; METHANE PRODUCTION; CELLULOLYTIC BACTERIA; SP-NOV
AB The ruminal microbial community is remarkably diverse, containing 100s of different bacterial and archaeal species, plus many species of fungi and protozoa. Molecular studies have identified a "core microbiome" dominated by phyla Firmicutes and Bacteroidetes, but also containing many other taxa. The rumen provides an ideal laboratory for studies on microbial ecology and the demonstration of ecological principles. In particular, the microbial community demonstrates both redundancy (overlap of function among multiple species) and resilience (resistance to, and capacity to recover from, perturbation). These twin properties provide remarkable stability that maintains digestive function for the host across a range of feeding and management conditions, but they also provide a challenge to engineering the rumen for improved function (e.g., improved fiber utilization or decreased methane production). Direct ruminal dosing or feeding of probiotic strains often fails to establish the added strains, due to intensive competition and amensalism from the indigenous residents that are well-adapted to the historical conditions within each rumen. Known exceptions include introduced strains that can fill otherwise unoccupied niches, as in the case of specialist bacteria that degrade phytotoxins such as mimosine or fluoroacetate. An additional complicating factor in manipulating the ruminal fermentation is the individuality or host specificity of the microbiota, in which individual animals contain a particular community whose species composition is capable of reconstituting itself, even following a near-total exchange of ruminal contents from another herd mate maintained on the same diet. Elucidation of the interactions between the microbial community and the individual host that establish and maintain this specificity may provide insights into why individual hosts vary in production metrics (e.g., feed efficiency or milk fat synthesis), and how to improve herd performance.
C1 [Weimer, Paul J.] ARS, US Daily Forage Res Ctr, USDA, Madison, WI 53706 USA.
[Weimer, Paul J.] Univ Wisconsin, Dept Bacteriol, Madison, WI 53706 USA.
RP Weimer, PJ (reprint author), ARS, US Daily Forage Res Ctr, USDA, 1925 Linden Dr West, Madison, WI 53706 USA.
EM paul.weimer@ars.usda.gov
NR 146
TC 18
Z9 18
U1 11
U2 82
PU FRONTIERS RESEARCH FOUNDATION
PI LAUSANNE
PA PO BOX 110, LAUSANNE, 1015, SWITZERLAND
SN 1664-302X
J9 FRONT MICROBIOL
JI Front. Microbiol.
PD APR 10
PY 2015
VL 6
AR UNSP 296
DI 10.3389/fmicb.2015.00296
PG 16
WC Microbiology
SC Microbiology
GA CF4WX
UT WOS:000352555500002
PM 25914693
ER
PT J
AU Slininger, PJ
Shea-Andersh, MA
Thompson, SR
Dien, BS
Kurtzman, CP
Balan, V
Sousa, LD
Uppugundla, N
Dale, BE
Cotta, MA
AF Slininger, Patricia J.
Shea-Andersh, Maureen A.
Thompson, Stephanie R.
Dien, Bruce S.
Kurtzman, Cletus P.
Balan, Venkatesh
Sousa, Leonardo da Costa
Uppugundla, Nirmal
Dale, Bruce E.
Cotta, Michael A.
TI Evolved strains of Scheffersomyces stipitis achieving high ethanol
productivity on acid- and base-pretreated biomass hydrolyzate at high
solids loading
SO BIOTECHNOLOGY FOR BIOFUELS
LA English
DT Article
DE Lignocellulose; Biofuel; Adaptation; Yeast; Pichia stipitis;
Fermentation
ID YEAST PICHIA-STIPITIS; XYLOSE-FERMENTING YEAST; NRRL Y-7124;
LIGNOCELLULOSIC BIOMASS; FERMENTATION; PHYSIOLOGY; CONVERSION; PH
AB Background: Lignocellulosic biomass is an abundant, renewable feedstock useful for the production of fuel-grade ethanol via the processing steps of pretreatment, enzyme hydrolysis, and microbial fermentation. Traditional industrial yeasts do not ferment xylose and are not able to grow, survive, or ferment in concentrated hydrolyzates that contain enough sugar to support economical ethanol recovery since they are laden with toxic byproducts generated during pretreatment.
Results: Repetitive culturing in two types of concentrated hydrolyzates was applied along with ethanol-challenged xylose-fed continuous culture to force targeted evolution of the native pentose fermenting yeast Scheffersomyces (Pichia) stipitis strain NRRL Y-7124 maintained in the ARS Culture Collection, Peoria, IL. Isolates collected from various enriched populations were screened and ranked based on relative xylose uptake rate and ethanol yield. Ranking on hydrolyzates with and without nutritional supplementation was used to identify those isolates with best performance across diverse conditions.
Conclusions: Robust S. stipitis strains adapted to perform very well in enzyme hydrolyzates of high solids loading ammonia fiber expansion-pretreated corn stover (18% weight per volume solids) and dilute sulfuric acid-pretreated switchgrass (20% w/v solids) were obtained. Improved features include reduced initial lag phase preceding growth, significantly enhanced fermentation rates, improved ethanol tolerance and yield, reduced diauxic lag during glucose-xylose transition, and ability to accumulate >40 g/L ethanol in <167 h when fermenting hydrolyzate at low initial cell density of 0.5 absorbance units and pH 5 to 6.
C1 [Slininger, Patricia J.; Shea-Andersh, Maureen A.; Thompson, Stephanie R.; Dien, Bruce S.; Cotta, Michael A.] ARS, Bioenergy Res Unit, Natl Ctr Agr Utilizat Res, USDA, Peoria, IL 61604 USA.
[Kurtzman, Cletus P.] ARS, Bacterial Foodborne Pathogens & Mycol Res, Natl Ctr Agr Utilizat Res, USDA, Peoria, IL 61604 USA.
[Balan, Venkatesh; Sousa, Leonardo da Costa; Uppugundla, Nirmal; Dale, Bruce E.] Michigan State Univ, DOE Great Lakes Bioenergy Res Ctr, E Lansing, MI 48824 USA.
RP Slininger, PJ (reprint author), ARS, Bioenergy Res Unit, Natl Ctr Agr Utilizat Res, USDA, 1815 N Univ, Peoria, IL 61604 USA.
EM Pat.Slininger@ars.usda.gov
RI da Costa Sousa, Leonardo/A-1536-2016;
OI Dien, Bruce/0000-0003-3863-6664
FU U.S. Department of Energy through the DOE Great Lakes Bioenergy Research
Center (GLBRC) [DE-FC02-07ER64494]
FX We would like to express our sincere appreciation to Drs. Kenneth Vogel,
Robert Mitchell, and Gautam Sarath, Grain, Forage, and Bioenergy
Research Unit, Agricultural Research Service, Lincoln, NE, for their
kind supply of switchgrass for this project. We also thank the U.S.
Department of Energy for funding to VB and NU through the DOE Great
Lakes Bioenergy Research Center (GLBRC) Grant DE-FC02-07ER64494.
NR 29
TC 5
Z9 5
U1 1
U2 11
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1754-6834
J9 BIOTECHNOL BIOFUELS
JI Biotechnol. Biofuels
PD APR 9
PY 2015
VL 8
AR 60
DI 10.1186/s13068-015-0239-6
PG 27
WC Biotechnology & Applied Microbiology; Energy & Fuels
SC Biotechnology & Applied Microbiology; Energy & Fuels
GA CG0FD
UT WOS:000352941100001
PM 25878726
ER
PT J
AU Yang, CH
Hoffmann, WC
AF Yang, Chenghai
Hoffmann, Wesley Clint
TI Low-cost single-camera imaging system for aerial applicators
SO JOURNAL OF APPLIED REMOTE SENSING
LA English
DT Article
DE low-cost imaging system; aerial applicator; geotagged image; image
mosaicking; crop condition assessment; pest detection
ID HIGH-RESOLUTION AIRBORNE; SATELLITE IMAGERY; DIGITAL CAMERAS; QUICKBIRD
AB Agricultural aircraft provide a readily available and versatile platform for airborne remote sensing. Although various airborne imaging systems are available, most of these systems are either too expensive or too complex to be of practical use for day-to-day aerial application operations. The objective of this study was to develop a low-cost, user-friendly imaging system that can be easily installed on aerial applicators. An imaging system was assembled using off-the-shelf electronics. The system consisted of a digital camera to capture color images, a GPS receiver to geotag images, a video monitor to view live images, and a remote control to trigger the camera. The camera was attached to an aerial applicator and the GPS unit and video monitor were installed in the cockpit. The parameters of the camera were optimized to acquire images under various altitudes, speeds, and ground cover conditions. Geotagged images taken from individual sites or large areas were viewed and mosaicked together using free and inexpensive software. Aerial applicators can assemble such a system and use it to generate additional revenues from remote sensing services. Analysis of sample images has shown that the imaging system has potential for crop condition assessment and pest detection. (C) The Authors. Published by SPIE under a Creative Commons Attribution 3.0 Unported License.
C1 [Yang, Chenghai; Hoffmann, Wesley Clint] USDA ARS, Aerial Applicat Technol Res Unit, College Stn, TX 77845 USA.
RP Yang, CH (reprint author), USDA ARS, Aerial Applicat Technol Res Unit, 3103 F&B Rd, College Stn, TX 77845 USA.
EM chenghai.yang@ars.usda.gov
NR 17
TC 4
Z9 4
U1 0
U2 10
PU SPIE-SOC PHOTO-OPTICAL INSTRUMENTATION ENGINEERS
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98225 USA
SN 1931-3195
J9 J APPL REMOTE SENS
JI J. Appl. Remote Sens.
PD APR 9
PY 2015
VL 9
AR 096064
DI 10.1117/1.JRS.9.096064
PG 17
WC Environmental Sciences; Remote Sensing; Imaging Science & Photographic
Technology
SC Environmental Sciences & Ecology; Remote Sensing; Imaging Science &
Photographic Technology
GA CF8UN
UT WOS:000352837500001
ER
PT J
AU Massei, G
Koon, KK
Benton, S
Brown, R
Gomm, M
Orahood, DS
Pietravalle, S
Eckery, DC
AF Massei, Giovanna
Koon, Ka-Kei
Benton, Steven
Brown, Richard
Gomm, Matt
Orahood, Darcy S.
Pietravalle, Stephane
Eckery, Douglas C.
TI Immunocontraception for Managing Feral Cattle in Hong Kong
SO PLOS ONE
LA English
DT Article
ID WHITE-TAILED DEER; HUMAN-WILDLIFE CONFLICTS; ELK CERVUS-ELAPHUS; GNRH
VACCINE; NEW-JERSEY; GONACON(TM); TRANSLOCATIONS; FERTILITY; HEALTH;
CONTRACEPTION
AB Conflicts between human interests and feral cattle in Hong Kong derive from growing numbers of free-roaming cattle. Public antipathy towards lethal population control led the local authorities to consider fertility control to reduce cattle numbers. This study assessed the potential side effects of the immunocontraceptive GonaCon on individual female cattle and established the effectiveness of GonaCon to induce infertility. We evaluated GonaCon in 34 captive cattle assigned to four groups: Control administered a sham solution; Webbed (surgically sterilized through removal of the oviducts), administered one dose of GonaCon; Webbed, administered one dose of GonaCon and a booster dose three months later, and Treated, administered one dose of GonaCon. The side effects of GonaCon were assessed by monitoring injection site, body weight, body condition, size of lymph nodes, body temperature, and feeding behaviour 1 week and 1, 3, 6, 9 and 12 months after vaccination and by haematological and biochemical variables at vaccination and three months post-vaccination. The effectiveness of GonaCon to cause infertility was monitored by quantifying antiGnRH antibody titres and by using kits to detect cycling and pregnancy. GonaCon-treated cattle showed no injection site reaction, limping, or abnormal behaviour. No differences were observed in all physiological and welfare indicators between control and vaccinated cattle. All control cattle and 4 of the 12 cattle in the Treated group became pregnant. Cattle administered a booster dose had higher anti-GnRH antibody titres than cattle that received one dose. We concluded that GonaCon does not compromise the animals' welfare and is effective in reducing fertility in cattle. A booster dose is likely to increase the duration of infertility. Further studies are required to assess the feasibility and costs of immunocontraception for controlling free-roaming cattle populations.
C1 [Massei, Giovanna; Gomm, Matt] Anim & Plant Hlth Agcy, Natl Wildlife Management Ctr, York, N Yorkshire, England.
[Koon, Ka-Kei; Benton, Steven] Fisheries & Conservat Dept, Anim Management Div, Agr, Hong Kong, Hong Kong, Peoples R China.
[Brown, Richard] City Univ Hong Kong, Sch Vet Med, Hong Kong, Hong Kong, Peoples R China.
[Orahood, Darcy S.; Eckery, Douglas C.] USDA, APHIS, Natl Wildlife Res Ctr, Ft Collins, CO USA.
[Pietravalle, Stephane] Food & Environm Res Agcy, York, N Yorkshire, England.
RP Massei, G (reprint author), Anim & Plant Hlth Agcy, Natl Wildlife Management Ctr, York, N Yorkshire, England.
EM giovanna.massei@apha.gsi.gov.uk
RI APHA, Staff publications/E-6082-2010; Massei, Giovanna/B-8781-2016;
OI BROWN, Richard Arthur Llewellyn/0000-0002-4890-7328
FU Agriculture, Fisheries and Conservation Department in Hong Kong
FX This study was funded by the Agriculture, Fisheries and Conservation
Department in Hong Kong. The funders had no role in study design, data
collection and analysis, decision to publish, or preparation of the
manuscript.
NR 41
TC 0
Z9 0
U1 2
U2 11
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 9
PY 2015
VL 10
IS 4
AR e0121598
DI 10.1371/journal.pone.0121598
PG 14
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CF5HQ
UT WOS:000352588500023
PM 25856283
ER
PT J
AU Roach, DR
Garrett, WM
Welch, G
Caperna, TJ
Talbot, NC
Shapiro, EM
AF Roach, Dwayne R.
Garrett, Wesley M.
Welch, Glenn
Caperna, Thomas J.
Talbot, Neil C.
Shapiro, Erik M.
TI Magnetic Cell Labeling of Primary and Stem Cell-Derived Pig Hepatocytes
for MRI-Based Cell Tracking of Hepatocyte Transplantation
SO PLOS ONE
LA English
DT Article
ID IRON-OXIDE PARTICLES; ACUTE LIVER-FAILURE; PORCINE HEPATOCYTES;
CONTINUOUS-CULTURE; SINGLE CELLS; LINE; MPIOS; SURVIVAL; MODEL;
POLY(LACTIDE-CO-GLYCOLIDE)
AB Pig hepatocytes are an important investigational tool for optimizing hepatocyte transplantation schemes in both allogeneic and xenogeneic transplant scenarios. MRI can be used to serially monitor the transplanted cells, but only if the hepatocytes can be labeled with a magnetic particle. In this work, we describe culture conditions for magnetic cell labeling of cells from two different pig hepatocyte cell sources; primary pig hepatocytes (ppHEP) and stem cell-derived hepatocytes (PICM-19FF). The magnetic particle is a micron-sized iron oxide particle (MPIO) that has been extensively studied for magnetic cell labeling for MRI-based cell tracking. ppHEP could endocytose MPIO with labeling percentages as high as 70%, achieving iron content as high as similar to 55 pg/cell, with > 75% viability. PICM-19FF had labeling > 97%, achieving iron content similar to 38 pg/cell, with viability > 99%. Extensive morphological and functional assays indicated that magnetic cell labeling was benign to the cells. The results encourage the use of MRI-based cell tracking for the development and clinical use of hepatocyte transplantation methodologies. Further, these results generally highlight the importance of functional cell assays in the evaluation of contrast agent biocompatibility.
C1 [Roach, Dwayne R.; Shapiro, Erik M.] Michigan State Univ, Dept Radiol, Mol & Cellular Imaging Lab, E Lansing, MI 48824 USA.
[Roach, Dwayne R.; Garrett, Wesley M.; Welch, Glenn; Caperna, Thomas J.; Talbot, Neil C.] USDA, Beltsville Agr Res Ctr, ARS, Anim Biosci & Biotechnol Lab, Beltsville, MD USA.
RP Shapiro, EM (reprint author), Michigan State Univ, Dept Radiol, Mol & Cellular Imaging Lab, E Lansing, MI 48824 USA.
EM erik.shapiro@rad.msu.edu
NR 61
TC 1
Z9 1
U1 3
U2 6
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 9
PY 2015
VL 10
IS 4
AR e0123282
DI 10.1371/journal.pone.0123282
PG 17
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CF5HQ
UT WOS:000352588500082
PM 25856627
ER
PT J
AU Garcia-Jaramillo, M
Cox, L
Knicker, HE
Cornejo, J
Spokas, KA
Hermosin, MC
AF Garcia-Jaramillo, Manuel
Cox, Lucia
Knicker, Heike E.
Cornejo, Juan
Spokas, Kurt A.
Hermosin, M. Carmen
TI Characterization and selection of biochar for an efficient retention of
tricyclazole in a flooded alluvial paddy soil
SO JOURNAL OF HAZARDOUS MATERIALS
LA English
DT Article
DE Fungicide; Dissolved organic matter; Specific surface area; C-13 NMR
spectroscopy; Polarity index; Adsorption
ID ORGANIC-MATTER; SLOW PYROLYSIS; BLACK CARBON; AGRONOMIC PERFORMANCE;
TRIAZOLE FUNGICIDES; MOLECULAR-STRUCTURE; CHEMICAL-PROPERTIES;
AGRICULTURAL SOIL; SORPTION; ADSORPTION
AB Biochars, from different organic residues, are increasingly proposed as soil amendments for their agronomic and environmental benefits. A systematic detection method that correlates biochar properties to their abilities to adsorb organic compounds is still lacking. Seven biochars obtained after pyrolysis at different temperatures and from different feedstock (alperujo compost, rice hull, and woody debris), were characterized and tested to reveal potential remedial forms for pesticide capture in flooded soils. Biochar properties were determined by nuclear magnetic resonance (NMR) spectroscopy, Fourier transform infrared spectroscopy, specific surface area (SSA) assessment and scanning electron microscopy. In addition, dissolved organic matter (DOM) from these biochars was extracted and quantified in order to evaluate the effect on pesticide sorption. The biochars from alperujo compost presented very high affinity to the fungicide tricyclazole (55.9, 83.5, and 90.3% for B1, B4, and B5, respectively). This affinity was positively correlated with the pyrolysis temperature, the pH, the increased SSA of the biochars, and the enhanced aromaticity. Sorptive capacities were negatively related to DOM contents. The amendment with a mixture of compost and biochar endows the alluvial soil with high sorptive properties (from K-fads(soil) = 9.26 to K-fads(mixture) = 17.89) without impeding the slow release of tricyclazole. (C) 2014 Elsevier B.V. All rights reserved.
C1 [Garcia-Jaramillo, Manuel; Cox, Lucia; Knicker, Heike E.; Cornejo, Juan; Hermosin, M. Carmen] CSIC, Inst Recursos Nat & Agrobiol Sevilla, E-41080 Seville, Spain.
[Spokas, Kurt A.] USDA ARS, St Paul, MN 55108 USA.
RP Garcia-Jaramillo, M (reprint author), CSIC, Inst Recursos Nat & Agrobiol Sevilla, POB 1052, E-41080 Seville, Spain.
EM mgarcia@irnas.csic.es
RI COX, LUCIA/M-4072-2015; Spokas, Kurt/F-4839-2016;
OI Spokas, Kurt/0000-0002-5049-5959; , LUCIA/0000-0003-2113-4780
FU Ministry of Economy and Competitiveness [AGL2010-21421,
AGL2013-48446-C3-1-R]; Autonomous Government of Andalusia [PAIDI
AGR-264]; European funds [FEDER-FSE PO2007-13]; MICINN
[AGL2010-21421-C02-01]
FX This research was supported by the Ministry of Economy and
Competitiveness (AGL2010-21421 and AGL2013-48446-C3-1-R) and the
Autonomous Government of Andalusia (PAIDI AGR-264). The projects were
co-financed with European funds (FEDER-FSE PO2007-13). Manuel
Garcia-Jaramillo thanks MEC/FECYT for a doctoral fellowship through
AGL2010-21421-C02-01 project of MICINN. Further, we would like to thank
to the Analytical Service of the IRNAS (CSIC) and to the Center of
Research Technology and Innovation of the University of Seville (CITIUS)
for their technical assistance.
NR 70
TC 5
Z9 5
U1 11
U2 84
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0304-3894
EI 1873-3336
J9 J HAZARD MATER
JI J. Hazard. Mater.
PD APR 9
PY 2015
VL 286
BP 581
EP 588
DI 10.1016/j.jhazmat.2014.10.052
PG 8
WC Engineering, Environmental; Engineering, Civil; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA CE6QN
UT WOS:000351963100067
PM 25643874
ER
PT J
AU Estrada-Melo, AC
Ma, C
Reid, MS
Jiang, CZ
AF Estrada-Melo, Alejandro C.
Ma, Chao
Reid, Michael S.
Jiang, Cai-Zhong
TI Overexpression of an ABA biosynthesis gene using a stress-inducible
promoter enhances drought resistance in petunia
SO HORTICULTURE RESEARCH
LA English
DT Article
ID ABSCISIC-ACID BIOSYNTHESIS; 9-CIS-EPOXYCAROTENOID DIOXYGENASE GENE;
PROLINE ACCUMULATION; ABIOTIC STRESS; WATER-STRESS;
NICOTIANA-PLUMBAGINIFOLIA; ARABIDOPSIS-THALIANA; ECTOPIC EXPRESSION;
COMPATIBLE SOLUTES; OSMOTIC-STRESS
AB The response of plants to drought stress includes reduced transpiration as stomates close in response to increased abscisic acid (ABA) concentrations. Constitutive overexpression of 9-cis-epoxycarotenoid dioxygenase (NCED), a key enzyme in ABA biosynthesis, increases drought resistance, but causes negative pleiotropic effects on plant growth and development. We overexpressed the tomato NCED (LeNCED1) in petunia plants under the control of a stress-inducible promoter, rd29A. Under water stress, the transgenic plants had increased transcripts of NCED mRNA, elevated leaf ABA concentrations, increased concentrations of proline, and a significant increase in drought resistance. The transgenic plants also displayed the expected decreases in stomatal conductance, transpiration, and photosynthesis. After 14 days without water, the control plants were dead, but the transgenic plants, though wilted, recovered fully when re-watered. Well-watered transgenic plants grew like non-transformed control plants and there was no effect of the transgene on seed dormancy.
C1 [Estrada-Melo, Alejandro C.; Ma, Chao; Reid, Michael S.] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[Jiang, Cai-Zhong] ARS, Crops Pathol & Genet Res Unit, USDA, Davis, CA 95616 USA.
RP Jiang, CZ (reprint author), ARS, Crops Pathol & Genet Res Unit, USDA, Davis, CA 95616 USA.
EM msreid@ucdavis.edu; cjiang@ucdavis.edu
NR 42
TC 8
Z9 9
U1 1
U2 10
PU NATURE PUBLISHING GROUP
PI LONDON
PA MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
SN 2052-7276
J9 HORTIC RES-ENGLAND
JI Hortic. Res.-England
PD APR 8
PY 2015
VL 2
AR 15013
DI 10.1038/hortres.2015.13
PG 9
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA CQ6EG
UT WOS:000360696600001
PM 26504568
ER
PT J
AU Meinelt, T
Phan, TM
Behrens, S
Wienke, A
Pedersen, LF
Liu, DB
Straus, DL
AF Meinelt, Thomas
Thy-My Phan
Behrens, Sascha
Wienke, Andreas
Pedersen, Lars-Flemming
Liu, Dibo
Straus, David L.
TI Growth inhibition of Aeromonas salmonicida and Yersinia ruckeri by
disinfectants containing peracetic acid
SO DISEASES OF AQUATIC ORGANISMS
LA English
DT Article
DE PAA; Peroxide; H2O2; Furunculosis; Yersiniosis; Fish pathogen;
Aquaculture; Bacteria; Water treatment
ID YOLK-SAC LARVAE; HYDROGEN-PEROXIDE; WASTE-WATER;
ICHTHYOPHTHIRIUS-MULTIFILIIS; EXPERIMENTAL-INFECTION; EFFLUENT; HALIBUT;
PAA; TOXICITY; PRODUCTS
AB Peracetic acid (PAA) is a therapeutic agent used for disinfection in aquaculture, but it must be investigated thoroughly in order to mitigate diseases without harming the fish. Successful disinfectants (like PAA) should not leave dangerous residues in the environment in order to successfully contribute to sustainable aquaculture. The aim of our study was to compare the effectiveness of 6 commercial PAA products with different molecular PAA:H2O2 ratios to reduce bacterial growth of Aeromonas salmonicida and Yersinia ruckeri and to determine effective concentrations and exposure times. All products reduced colony-forming units (CFUs) of Aeromonas salmonicida and Yersinia ruckeri. Products with higher molecular PAA:H2O2 ratios inhibited growth better than products with lower molecular PAA:H2O2 ratios at the same PAA concentration; this indicates that H2O2 is not the driving force in the reduction of Aeromonas salmonicida and Yersinia ruckeri growth by PAA in vitro. The practical application of the products with high molecular PAA:H2O2 ratios should be prioritized if these pathogens are diagnosed.
C1 [Meinelt, Thomas; Thy-My Phan; Behrens, Sascha; Wienke, Andreas; Liu, Dibo] Leibniz Inst Freshwater Ecol & Inland Fisheries, Dept Ecophysiol & Aquaculture, D-12587 Berlin, Germany.
[Pedersen, Lars-Flemming] Tech Univ Denmark, North Sea Res Ctr, Aquaculture Sect, DTU Aqua, DK-9850 Hirtshals, Denmark.
[Liu, Dibo] Humboldt Univ, Fac Agr & Hort, D-10115 Berlin, Germany.
[Straus, David L.] USDA ARS, Harry K Dupree Stuttgart Natl Aquaculture Res Ctr, Stuttgart, AR 72160 USA.
RP Meinelt, T (reprint author), Leibniz Inst Freshwater Ecol & Inland Fisheries, Dept Ecophysiol & Aquaculture, Muggelseedamm 301, D-12587 Berlin, Germany.
EM meinelt@igb-berlin.de
RI Pedersen, Lars-Flemming/D-9919-2011
OI Pedersen, Lars-Flemming/0000-0002-8361-9268
FU Schreiner-Foundation for Research and Education
FX We thank the Schreiner-Foundation for Research and Education for
financial support. We also thank Bradley Farmer and Cindy Ledbetter for
their review of the manuscript. Mention of trade names or commercial
products in this article is solely informative and does not imply
recommendation or endorsement by the Leibniz Institute of Freshwater
Ecology and Inland Fisheries, the DTU Aqua, or the US Department of
Agriculture. The USDA is an equal opportunity provider and employer.
NR 28
TC 1
Z9 1
U1 4
U2 20
PU INTER-RESEARCH
PI OLDENDORF LUHE
PA NORDBUNTE 23, D-21385 OLDENDORF LUHE, GERMANY
SN 0177-5103
EI 1616-1580
J9 DIS AQUAT ORGAN
JI Dis. Aquat. Org.
PD APR 8
PY 2015
VL 113
IS 3
BP 207
EP 213
DI 10.3354/dao02847
PG 7
WC Fisheries; Veterinary Sciences
SC Fisheries; Veterinary Sciences
GA CG5MH
UT WOS:000353335500004
PM 25850398
ER
PT J
AU Friedman, M
AF Friedman, Mendel
TI Chemistry and Anticarcinogenic Mechanisms of Glycoalkaloids Produced by
Eggplants, Potatoes, and Tomatoes
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Review
DE glycoalkaloids; alpha-solamargine; alpha-solasonine; solasodine;
alpha-chaconine; alpha-solanine; solanidine; alpha-tomatine; tomatidine;
eggplants; potatoes; tomatoes; chemistry; analysis; cancer cell
inhibition; tumor inhibition; mechanisms; biomarkers; signaling
pathways; immunostimulating effects; membrane disruptive effects;
tomatine-cholesterol affinity; additive effects; synergistic effects;
human health; research needs
ID BREAST-CANCER CELLS; TUMOR-BEARING MICE; SOLAMARGINE INDUCES APOPTOSIS;
ADENOCARCINOMA A549 CELLS; HUMAN K562 LEUKEMIA; SOLANUM-MELONGENA-L;
RICE BRAN EXTRACTS; ALPHA-TOMATINE; STEROIDAL ALKALOIDS; SOLASODINE
GLYCOSIDES
AB Inhibition of cancer can occur via apoptosis, a genetically directed process of cell self-destruction that involves numerous biomarkers and signaling pathways. Glycoalkaloids are nitrogen-containing secondary plant metabolites found in numerous Solanaceous plants including eggplants, potatoes, and tomatoes. Exposure of cancer cells to glycoalkaloids produced by eggplants (alpha-solamargine and a-solasonine), potatoes (alpha-chaconine and alpha-solanine), and tomatoes (alpha-tomatine) or their hydrolysis products (mono-, di-, and trisaccharide derivatives and the aglycones solasodine, solanidine, and tomatidine) inhibits the growth of the cells in culture (in vitro) as well as tumor growth in vivo. This overview comprehensively surveys and consolidates worldwide efforts to define the following aspects of these natural compounds: (a) their prevalence in the three foods; (b) their chemistry and structureactivity relationships; (c) the reported factors (biomarkers, signaling pathways) associated with apoptosis of bone, breast, cervical, colon, gastric, glioblastoma, leukemia, liver, lung, lymphoma, melanoma, pancreas, prostate, and squamous cell carcinoma cell lines in vitro and the in vivo inhibition of tumor formation and growth in fish and mice and in human skin cancers; and (d) future research needs. The described results may make it possible to better relate the structures of the active compounds to their health-promoting function, individually, in combination, and in food, and allow the consumer to select glycoalkaloid-containing food with the optimal content of nontoxic beneficial compounds. The described findings are expected to be a valuable record and resource for further investigation of the health benefits of food-related natural compounds.
C1 ARS, Western Reg Res Ctr, USDA, Albany, CA 94710 USA.
RP Friedman, M (reprint author), ARS, Western Reg Res Ctr, USDA, Albany, CA 94710 USA.
EM Mendel.Friedman@ars.usda.gov
OI Friedman, Mendel/0000-0003-2582-7517
NR 141
TC 12
Z9 12
U1 20
U2 102
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
EI 1520-5118
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD APR 8
PY 2015
VL 63
IS 13
BP 3323
EP 3337
DI 10.1021/acs.jafc.5b00818
PG 15
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA CF7QI
UT WOS:000352751000002
PM 25821990
ER
PT J
AU Brandon, DL
Adams, LM
AF Brandon, David L.
Adams, Lisa M.
TI Milk Matrix Effects on Antibody Binding Analyzed by Enzyme-Linked
Immunosorbent Assay and Biolayer Interferometry
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE ricin; Ricinus communis agglutinin; castor; monoclonal antibody;
biolayer interferometry; milk; asialofetuin
ID IN-GROUND BEEF; RICIN CONTAMINATION; MONOCLONAL-ANTIBODIES;
BIOLOGICAL-ACTIVITY; RECOGNITION; LECTIN; ASIALOFETUIN; IMMUNOTOXINS;
INHIBITORS; BIOSENSOR
AB Biolayer interferometry (BLI) was employed to study the impact of the milk matrix on the binding of ricin to asialofetuin (ASF) and to antibodies. This optical sensing platform used ligands immobilized covalently or via biotinstreptavidin linkage, and the results were compared to those obtained by enzyme-linked immunosorbent assay (ELISA). In sandwich ELISA, the binding of ricin to ASF was dramatically decreased when galactose was present during the analyte or detection antibody binding step. Low concentrations of milk (1%, v/v) produced a similar reduction in ricin binding to ASF but not to a high-affinity monoclonal antibody (mAb), increasing the dissociation rate of ASF-ricin complexes up to 100-fold. The effect of milk on the binding of ricin to ASF was ascribable to dialyzable factors, and milk sugar can account for these effects. The use of high-affinity mAbs in ELISA effectively limits the milk matrix effect on ricin analysis.
C1 [Brandon, David L.; Adams, Lisa M.] ARS, Foodbome Toxin Detect & Prevent Res Unit, Western Reg Res Ctr, USDA, Albany, CA 94710 USA.
RP Brandon, DL (reprint author), ARS, Foodbome Toxin Detect & Prevent Res Unit, Western Reg Res Ctr, USDA, 800 Buchanan St, Albany, CA 94710 USA.
EM david.brandon@ars.usda.gov
FU National Research Program 108 (Food Safety) [2030-42000-048]
FX This study was undertaken under Project 2030-42000-048 of the National
Research Program 108 (Food Safety) and was facilitated by the Western
Regional Research Center student internship program (to Lisa M. Adams).
NR 32
TC 2
Z9 2
U1 6
U2 13
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
EI 1520-5118
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD APR 8
PY 2015
VL 63
IS 13
BP 3593
EP 3598
DI 10.1021/acs.jafc.5b01136
PG 6
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA CF7QI
UT WOS:000352751000031
PM 25822824
ER
PT J
AU Peterson, SW
Jurjevic, Z
Frisvad, JC
AF Peterson, Stephen W.
Jurjevic, Zeljko
Frisvad, Jens C.
TI Expanding the Species and Chemical Diversity of Penicillium Section
Cinnamopurpurea
SO PLOS ONE
LA English
DT Article
ID EUPENICILLIUM-OCHROSALMONEUM; SEXUAL REPRODUCTION; ASPERGILLUS-FLAVUS;
MODEL EUKARYOTE; PECAN FRAGMENTS; CONIDIAL HEADS; SP NOV.;
CITREOVIRIDIN; RECOGNITION; METABOLITES
AB A set of isolates very similar to or potentially conspecific with an unidentified Penicillium isolate NRRL 735, was assembled using a BLAST search of ITS similarity among described (GenBank) and undescribed Penicillium isolates in our laboratories. DNA was amplified from six loci of the assembled isolates and sequenced. Two species in section Cinnamo-purpurea are self-compatible sexual species, but the asexual species had polymorphic loci suggestive of sexual reproduction and variation in conidium size suggestive of ploidy level differences typical of heterothallism. Accordingly we use genealogical concordance analysis, a technique valid only in heterothallic organisms, for putatively asexual species. Seven new species were revealed in the analysis and are described here. Extrolite analysis showed that two of the new species, P. colei and P. monsserratidens produce the mycotoxin citreoviridin that has demonstrated pharmacological activity against human lung tumors. These isolates could provide leads in pharmaceutical research.
C1 [Peterson, Stephen W.] USDA ARS, Natl Ctr Agr Utilizat Res, Bacterial Foodborne Pathogens & Mycol Res Unit, Peoria, IL 61604 USA.
[Jurjevic, Zeljko] EMSL Analytical Inc, Cinnaminson, NJ 08077 USA.
[Frisvad, Jens C.] Tech Univ Denmark, DK-2800 Lyngby, Denmark.
RP Peterson, SW (reprint author), USDA ARS, Natl Ctr Agr Utilizat Res, Bacterial Foodborne Pathogens & Mycol Res Unit, 1815 N Univ St, Peoria, IL 61604 USA.
EM Stephen.peterson@ars.usda.gov
NR 81
TC 4
Z9 4
U1 5
U2 13
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 8
PY 2015
VL 10
IS 4
AR e0121987
DI 10.1371/journal.pone.0121987
PG 28
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CF3WA
UT WOS:000352478400057
PM 25853891
ER
PT J
AU Yang, Y
Li, YQ
Walse, SS
Mitch, WA
AF Yang, Yu
Li, Yuanqing
Walse, Spencer S.
Mitch, William A.
TI Destruction of Methyl Bromide Sorbed to Activated Carbon by Thiosulfate
or Electrolysis
SO ENVIRONMENTAL SCIENCE & TECHNOLOGY
LA English
DT Article
ID HYDROGEN-SULFIDE; BLACK CARBON; HALOGENATED FUMIGANTS;
HEXAHYDRO-1,3,5-TRINITRO-1,3,5-TRIAZINE; TRANSFORMATION; DEGRADATION;
ADSORPTION; RDX
AB Methyl bromide (CH3Br) is widely used as a fumigant for postharvest and quarantine applications for agricultural products at port facilities due to the short treatment period required, but it is vented from fumigation chambers to the atmosphere after its use. Due to the potential contributions of CH3Br to stratospheric ozone depletion, technologies for the capture and degradation of the CH3Br are needed to enable its continued use. Although granular activated carbon (GAC) has been used for CH3Br capture and thiosulfate has been used for destruction of CH3Br in aqueous solution, this research explored techniques for direct destruction of CH3Br sorbed to GAC. Submerging the GAC in an aqueous thiosulfate solution achieved debromination of CH3Br while sorbed to the GAC, but it required molar concentrations of thiosulfate because of the high CH3Br loading and produced substantial concentrations of methyl thiosulfate. Submergence of the GAC in water and use of the GAC as the cathode of an electrolysis unit also debrominated sorbed CH3Br. The reaction appeared to involve a one-electron transfer, producing methyl radicals that incorporated into the GAC. Destruction rates increased with decreasing applied voltage down to similar to-1.2 V vs the standard hydrogen electrode. Cycling experiments conducted at -0.77 V indicated that >80% debromination of CH3Br was achieved over similar to 30 h with similar to 100% Coulombic efficiency. Sorptive capacity and degradation efficiency were maintained over at least 3 cycles. Capture of CH3Br fumes from fumigation chambers onto GAC, and electrolytic destruction of the sorbed CH3Br could mitigate the negative impacts of CH3Br usage pending the development of suitable replacement fumigants.
C1 [Yang, Yu] Univ Nevada, Dept Civil & Environm Engn, Reno, NV 89557 USA.
[Li, Yuanqing; Mitch, William A.] Stanford Univ, Dept Civil & Environm Engn, Stanford, CA 94305 USA.
[Walse, Spencer S.] ARS, San Joaquin Valley Agr Sci Ctr, USDA, Parlier, CA 93648 USA.
RP Mitch, WA (reprint author), Stanford Univ, Dept Civil & Environm Engn, Jerry Yang & Akiko Yamazaki Energy & Environm, Stanford, CA 94305 USA.
EM wamitch@stanford.edu
FU USDA Agricultural Research Service; USDA Foreign Agricultural Service;
California Dried Plum Board under the Technical Assistance for Specialty
Crops program [2010-19]
FX This research was funded by the USDA Agricultural Research Service as
well as the USDA Foreign Agricultural Service and the California Dried
Plum Board under the Technical Assistance for Specialty Crops program,
agreement no. 2010-19. Mention of trade names or commercial products in
this publication is solely for the purpose of providing specific
information and does not imply recommendation or endorsement by the U.S.
Department of Agriculture. USDA is an equal opportunity provider and
employer.
NR 19
TC 2
Z9 2
U1 5
U2 28
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0013-936X
EI 1520-5851
J9 ENVIRON SCI TECHNOL
JI Environ. Sci. Technol.
PD APR 7
PY 2015
VL 49
IS 7
BP 4515
EP 4521
DI 10.1021/es505709c
PG 7
WC Engineering, Environmental; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA CF6HY
UT WOS:000352659000061
PM 25789797
ER
PT J
AU Moore, KD
Wojcik, MD
Martin, RS
Marchant, CC
Jones, DS
Bradford, WJ
Bingham, GE
Pfeiffer, RL
Prueger, JH
Hatfield, JL
AF Moore, Kori D.
Wojcik, Michael D.
Martin, Randal S.
Marchant, Christian C.
Jones, Derek S.
Bradford, William J.
Bingham, Gail E.
Pfeiffer, Richard L.
Prueger, John H.
Hatfield, Jerry L.
TI Particulate-matter emission estimates from agricultural spring-tillage
operations using LIDAR and inverse modeling
SO JOURNAL OF APPLIED REMOTE SENSING
LA English
DT Article
DE agricultural tillage; particulate matter; emissions estimation; LIDAR;
air dispersion modeling; control efficiency
ID SAN-JOAQUIN VALLEY; PM10 EMISSIONS; ASSISTED MEASUREMENT; PART I
AB Particulate-matter (PM) emissions from a typical spring agricultural tillage sequence and a strip-till conservation tillage sequence in California's San Joaquin Valley were estimated to calculate the emissions control efficiency (eta) of the strip-till conservation management practice (CMP). Filter-based PM samplers, PM-calibrated optical particle counters (OPCs), and a PM-calibrated light detection and ranging (LIDAR) system were used to monitored upwind and downwind PM concentrations during May and June 2008. Emission rates were estimated through inverse modeling coupled with the filter and OPC measurements and through applying a mass balance to the PM concentrations derived from LIDAR data. Sampling irregularities and errors prevented the estimation of emissions from 42% of the sample periods based on filter samples. OPC and LIDAR datasets were sufficiently complete to estimate emissions and the strip-till CMP., which were similar to 90% for all size fractions in both datasets. Tillage time was also reduced by 84%. Calculated emissions for some operations were within the range of values found in published studies, while other estimates were significantly higher than literature values. The results demonstrate that both PM emissions and tillage time may be reduced by an order of magnitude through the use of a strip-till conservation tillage CMP when compared to spring tillage activities. (C) The Authors. Published by SPIE under a Creative Commons Attribution 3.0 Unported License.
C1 [Moore, Kori D.; Wojcik, Michael D.; Marchant, Christian C.; Jones, Derek S.; Bradford, William J.; Bingham, Gail E.] Utah State Univ, Res Fdn, Space Dynam Lab, North Logan, UT 84341 USA.
[Moore, Kori D.; Martin, Randal S.] Utah State Univ, Dept Civil & Environm Engn, Logan, UT 84322 USA.
[Pfeiffer, Richard L.; Prueger, John H.; Hatfield, Jerry L.] USDA, Natl Lab Agr & Environm, Agr Res Serv, Ames, IA 50011 USA.
RP Moore, KD (reprint author), Utah State Univ, Res Fdn, Space Dynam Lab, 1695 North Res Pk Way, North Logan, UT 84341 USA.
EM kori.moore@sdl.usu.edu
FU San Joaquin Valleywide Air Pollution Study Agency [07-1 AG]; U.S.
Department of Agriculture [58-3625-9-743]
FX We thank the individuals and groups whose efforts made this study and
subsequent analysis possible. Funding was provided by the San Joaquin
Valleywide Air Pollution Study Agency under Contract No. 07-1 AG and the
U.S. Department of Agriculture, Cooperative Agreement # 58-3625-9-743.
Cooperators include the USDA ARS, National Laboratory for Agriculture
and the Environment; Utah State University; EPA Region 9; EPA Office of
Research and Development, National Exposure Research Laboratory; the San
Joaquin Valley Ag Technical Group; the San Joaquin Valley Air Pollution
Control District; the California Air Resources Board; and the
cooperative agricultural producers and industry representatives. Mention
of trade names does not constitute endorsement by the USDA ARS, EPA,
Space Dynamics Laboratory, or Utah State University.
NR 31
TC 2
Z9 2
U1 4
U2 9
PU SPIE-SOC PHOTO-OPTICAL INSTRUMENTATION ENGINEERS
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98225 USA
SN 1931-3195
J9 J APPL REMOTE SENS
JI J. Appl. Remote Sens.
PD APR 7
PY 2015
VL 9
AR 096066
DI 10.1117/1.JRS.9.096066
PG 23
WC Environmental Sciences; Remote Sensing; Imaging Science & Photographic
Technology
SC Environmental Sciences & Ecology; Remote Sensing; Imaging Science &
Photographic Technology
GA CF8RZ
UT WOS:000352830900002
ER
PT J
AU Burke, JJ
Chen, JP
AF Burke, John J.
Chen, Junping
TI Enhancement of Reproductive Heat Tolerance in Plants
SO PLOS ONE
LA English
DT Article
ID HIGH-TEMPERATURE STRESS; POLLEN-TUBE GROWTH; PIMA COTTON GROWTH;
SHOCK-PROTEIN; CARBON-DIOXIDE; GENETIC-TRANSFORMATION;
TISSUE-SPECIFICITY; COMBINING ABILITY; TOMATO GENOTYPES; SYNTHASE GENES
AB Comparison of average crop yields with reported record yields has shown that major crops exhibit annual average yields three-to seven-fold lower than record yields because of unfavorable environments. The current study investigated the enhancement of pollen heat tolerance through expressing an Arabidopsis thaliana heat shock protein 101 (AtHSP101) that is not normally expressed in pollen but reported to play a crucial role in vegetative thermotolerance. The AtHSP101 construct under the control of the constitutive ocs/mas 'superpromoter' was transformed into cotton Coker 312 and tobacco SRI lines via Agrobacterium mediated transformation. Thermotolerance of pollen was evaluated by in vitro pollen germination studies. Comparing with those of wild type and transgenic null lines, pollen from AtHSP101 transgenic tobacco and cotton lines exhibited significantly higher germination rate and much greater pollen tube elongation under elevated temperatures or after a heat exposure. In addition, significant increases in boll set and seed numbers were also observed in transgenic cotton lines exposed to elevated day and night temperatures in both greenhouse and field studies. The results of this study suggest that enhancing heat tolerance of reproductive tissues in plant holds promise in the development of crops with improved yield production and yield sustainability in unfavorable environments.
C1 [Burke, John J.; Chen, Junping] USDA ARS, Cropping Syst Res Lab, Lubbock, TX 79401 USA.
RP Burke, JJ (reprint author), USDA ARS, Cropping Syst Res Lab, 3810 4th St, Lubbock, TX 79401 USA.
EM john.burke@ars.usda.gov
FU United States Department of Agriculture, Agricultural Research Service,
Base Funding
FX This work was supported by United States Department of Agriculture,
Agricultural Research Service, Base Funding.
NR 61
TC 5
Z9 7
U1 7
U2 45
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 7
PY 2015
VL 10
IS 4
AR e0122933
DI 10.1371/journal.pone.0122933
PG 23
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CF3VU
UT WOS:000352477800177
PM 25849955
ER
PT J
AU Hildebrand, A
Kasuga, T
Fan, ZL
AF Hildebrand, Amanda
Kasuga, Takao
Fan, Zhiliang
TI Production of Cellobionate from Cellulose Using an Engineered Neurospora
crassa Strain with Laccase and Redox Mediator Addition
SO PLOS ONE
LA English
DT Article
ID LACTOBIONIC ACID PRODUCTION; PSEUDOMONAS-TAETROLENS; NATURAL MEDIATORS;
PAPER PULP; DEHYDROGENASE; PURIFICATION; WHEY; EXPRESSION; INDUCTION;
PHENOLS
AB We report a novel production process for cellobionic acid from cellulose using an engineered fungal strain with the exogenous addition of laccase and a redox mediator. A previously engineered strain of Neurospora crassa (F5 Delta ace-1 Delta cre-1 Delta ndvB) was shown to produce cellobionate directly from cellulose without the addition of exogenous cellulases. Specifically, N. crassa produces cellulases, which hydrolyze cellulose to cellobiose, and cellobiose dehydrogenase (CDH), which oxidizes cellobiose to cellobionate. However, the conversion of cellobiose to cellobionate is limited by the slow re-oxidation of CDH by molecular oxygen. By adding low concentrations of laccase and a redox mediator to the fermentation, CDH can be efficiently oxidized by the redox mediator, with in-situ re-oxidation of the redox mediator by laccase. The conversion of cellulose to cellobionate was optimized by evaluating pH, buffer, and laccase and redox mediator addition time on the yield of cellobionate. Mass and material balances were performed, and the use of the native N. crassa laccase in such a conversion system was evaluated against the exogenous Pleurotus ostreatus laccase. This paper describes a working concept of cellobionate production from cellulose using the CDH-ATBS-laccase system in a fermentation system.
C1 [Hildebrand, Amanda; Fan, Zhiliang] Univ Calif Davis, Dept Biol & Agr Engn, Davis, CA 95616 USA.
[Kasuga, Takao] Univ Calif Davis, Dept Plant Pathol, Davis, CA 95616 USA.
[Kasuga, Takao] USDA ARS, Davis, CA 95616 USA.
RP Fan, ZL (reprint author), Univ Calif Davis, Dept Biol & Agr Engn, One Shields Ave, Davis, CA 95616 USA.
EM jzfan@ucdavis.edu
FU Agriculture and Food Research Initiative Competitive Grant from the USDA
National Institute of Food and Agriculture [2011-67009-20060]; EPA Star
fellowship; Cota-Robles fellowship
FX The project was supported by the Agriculture and Food Research
Initiative Competitive Grant No. 2011-67009-20060 from the USDA National
Institute of Food and Agriculture. The authors also acknowledge funding
support to Amanda Hildebrand from EPA Star fellowship and Cota-Robles
fellowship.
NR 36
TC 4
Z9 4
U1 2
U2 18
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 7
PY 2015
VL 10
IS 4
AR e0123006
DI 10.1371/journal.pone.0123006
PG 12
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CF3VU
UT WOS:000352477800193
PM 25849253
ER
PT J
AU Wang, ML
Khera, P
Pandey, MK
Wang, H
Qiao, LX
Feng, SP
Tonnis, B
Barkley, NA
Pinnow, D
Holbrook, CC
Culbreath, AK
Varshney, RK
Guo, BZ
AF Wang, Ming Li
Khera, Pawan
Pandey, Manish K.
Wang, Hui
Qiao, Lixian
Feng, Suping
Tonnis, Brandon
Barkley, Noelle A.
Pinnow, David
Holbrook, Corley C.
Culbreath, Albert K.
Varshney, Rajeev K.
Guo, Baozhu
TI Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into
the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis
hypogaea L.)
SO PLOS ONE
LA English
DT Article
ID CULTIVATED PEANUT; LINOLENIC ACID; OLEIC-ACID; TRAIT; OIL;
PHOTOSYNTHESIS; IDENTIFICATION; REGISTRATION; COLLECTION; GENOMICS
AB Peanut, a high-oil crop with about 50% oil content, is either crushed for oil or used as edible products. Fatty acid composition determines the oil quality which has high relevance to consumer health, flavor, and shelf life of commercial products. In addition to the major fatty acids, oleic acid (C18:1) and linoleic acid (C18:2) accounting for about 80% of peanut oil, the six other fatty acids namely palmitic acid (C16:0), stearic acid (C18:0), arachidic acid (C20:0), gadoleic acid (C20:1), behenic acid (C22:0), and lignoceric acid (C24:0) are accounted for the rest 20%. To determine the genetic basis and to improve further understanding on effect of FAD2 genes on these fatty acids, two recombinant inbred line (RIL) populations namely S-population (high oleic line 'SunOleic 97R' x low oleic line 'NC94022') and T-population (normal oleic line 'Tifrunner' x low oleic line 'GT-C20') were developed. Genetic maps with 206 and 378 marker loci for the S-and the T-population, respectively were used for quantitative trait locus (QTL) analysis. As a result, a total of 164 main-effect (M-QTLs) and 27 epistatic (E-QTLs) QTLs associated with the minor fatty acids were identified with 0.16% to 40.56% phenotypic variation explained (PVE). Thirty four major QTLs (>10% of PVE) mapped on five linkage groups and 28 clusters containingmore than three QTLs were also identified. These results suggest that the major QTLs with large additive effects would play an important role in controlling composition of these minor fatty acids in addition to the oleic and linoleic acids in peanut oil. The interrelationship among these fatty acids should be considered while breeding for improved peanut genotypes with good oil quality and desired fatty acid composition.
C1 [Wang, Ming Li; Tonnis, Brandon; Barkley, Noelle A.; Pinnow, David] USDA ARS, Plant Genet Resources Conservat Unit, Griffin, GA USA.
[Khera, Pawan; Pandey, Manish K.; Wang, Hui; Qiao, Lixian; Feng, Suping; Guo, Baozhu] USDA ARS, Crop Protect & Management Res Unit, Tifton, GA 31793 USA.
[Khera, Pawan; Pandey, Manish K.; Varshney, Rajeev K.] Int Crops Res Inst Semi Arid Trop, Hyderabad, Telangana, India.
[Khera, Pawan; Pandey, Manish K.; Wang, Hui; Qiao, Lixian; Feng, Suping; Culbreath, Albert K.; Guo, Baozhu] Univ Georgia, Dept Plant Pathol, Tifton, GA 31793 USA.
[Wang, Hui] Fujian Agr & Forestry Univ, Fuzhou, Fujian, Peoples R China.
[Qiao, Lixian] Qingdao Agr Univ, Coll Life Sci, Qingdao, Shandong, Peoples R China.
[Feng, Suping] Qiongzhou Univ, Coll Biosci & Biotechnol, Sanya, Hainan, Peoples R China.
[Holbrook, Corley C.] USDA ARS, Crop Genet & Breeding Res Unit, Tifton, GA 31793 USA.
RP Varshney, RK (reprint author), Int Crops Res Inst Semi Arid Trop, Hyderabad, Telangana, India.
EM r.k.varshney@cgiar.org; baozhu.guo@ars.usda.gov
RI Varshney, Rajeev/C-5295-2014
OI Varshney, Rajeev/0000-0002-4562-9131
FU USDA Agricultural Research Service; Georgia Agricultural Commodity
Commission for Peanuts; Peanut Foundation; National Peanut Board
FX This research was partially supported by funds provided by the USDA
Agricultural Research Service, the Georgia Agricultural Commodity
Commission for Peanuts, Peanut Foundation and National Peanut Board.
This work has been undertaken as part of the CGIAR Research Program on
Grain Legumes. ICRISAT is a member of CGIAR Consortium. The funders had
no role in study design, data collection and analysis, decision to
publish, or preparation of the manuscript.
NR 39
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PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 7
PY 2015
VL 10
IS 4
AR UNSP e0119454
DI 10.1371/journal.pone.0119454
PG 21
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CF3VU
UT WOS:000352477800012
PM 25849082
ER
PT J
AU Zhang, ML
Wen, ZB
Fritsch, PW
Sanderson, SC
AF Zhang, Ming-Li
Wen, Zhi-Bin
Fritsch, Peter W.
Sanderson, Stewart C.
TI Spatiotemporal Evolution of Calophaca (Fabaceae) Reveals Multiple
Dispersals in Central Asian Mountains
SO PLOS ONE
LA English
DT Article
ID QINGHAI-TIBETAN PLATEAU; LATE MIOCENE; MOLECULAR PHYLOGENY;
MEDITERRANEAN BASIN; VICARIANCE ANALYSIS; GLACIAL REFUGIA; EUROPEAN
ALPS; UPLIFT; BIOGEOGRAPHY; DIVERSIFICATION
AB Background
The Central Asian flora plays a significant role in Eurasia and the Northern Hemisphere. Calophaca, a member of this flora, includes eight currently recognized species, and is centered in Central Asia, with some taxa extending into adjacent areas. A phylogenetic analysis of the genus utilizing nuclear ribosomal ITS and plastid trnS-trnG and rbcL sequences was carried out in order to confirm its taxonomic status and reconstruct its evolutionary history.
Methodology/Principal Finding
We employed BEAST Bayesian inference for dating, and S-DIVA and BBM for ancestral area reconstruction, to study its spatiotemporal evolution. Our results show that Calophacais monophyletic and nested within Caragana. The divergence time of Calophaca is estimated at ca. 8.0 Ma, most likely driven by global cooling and aridification, influenced by rapid uplift of the Qinghai Tibet Plateau margins.
Conclusions/Significance
According to ancestral area reconstructions, the genus most likely originated in the Pamir Mountains, a global biodiversity hotspot and hypothesized Tertiary refugium of many Central Asian plant lineages. Dispersals from this location are inferred to the western Tianshan Mountains, then northward to the Tarbagatai Range, eastward to East Asia, and westward to the Caucasus, Russia, and Europe. The spatiotemporal evolution of Calophaca provides a case contributing to an understanding of the flora and biodiversity of the Central Asian mountains and adjacent regions.
C1 [Zhang, Ming-Li; Wen, Zhi-Bin] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, Key Lab Biogeog & Bioresource Arid Land, Urumqi, Peoples R China.
[Zhang, Ming-Li] Chinese Acad Sci, Inst Bot, Beijing, Peoples R China.
[Fritsch, Peter W.] Calif Acad Sci, Dept Bot, San Francisco, CA 94118 USA.
[Sanderson, Stewart C.] US Forest Serv, Shrub Sci Lab, Intermt Res Stn, USDA, Provo, UT USA.
RP Zhang, ML (reprint author), Chinese Acad Sci, Xinjiang Inst Ecol & Geog, Key Lab Biogeog & Bioresource Arid Land, Urumqi, Peoples R China.
EM zhangml@ibcas.ac.cn
FU China National Basic Research Special Program [2012FY111500]; Innovation
Research Group Program of Chinese Academy of Sciences and State
Administration of Foreign Experts Affairs of China [KZCX2-YW-T09]; State
International Science and Technology Cooperation Program of China
[2010DFA92720]; Xinjiang Institute of Ecology and Geography, Chinese
Academy of Sciences
FX This study was funded by China National Basic Research Special Program
(2012FY111500), Innovation Research Group Program of Chinese Academy of
Sciences and State Administration of Foreign Experts Affairs of China
(KZCX2-YW-T09), State International Science and Technology Cooperation
Program of China (2010DFA92720), and Xinjiang Institute of Ecology and
Geography, Chinese Academy of Sciences. The funders had no role in study
design, data collection and analysis, decision to publish, or
preparation of the manuscript.
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PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 7
PY 2015
VL 10
IS 4
AR e0123228
DI 10.1371/journal.pone.0123228
PG 14
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CF3VU
UT WOS:000352477800216
PM 25849146
ER
PT J
AU Beard, JJ
Ochoa, R
Braswell, WE
Bauchan, GR
AF Beard, Jennifer J.
Ochoa, Ronald
Braswell, W. Evan
Bauchan, Gary R.
TI Brevipalpus phoenicis (Geijskes) species complex (Acari:
Tenuipalpidae)-a closer look
SO ZOOTAXA
LA English
DT Article
DE Brevipalpus species groups; Citrus; citrus leprosis virus; differential
interference contrast; flat mites; low temperature scanning electron
microscopy; phase contrast; systematics
ID MITES ACARI TENUIPALPIDAE; B-OBOVATUS; VIRUSES; CALIFORNICUS; DISEASES;
VECTORS; PLANTS
AB Brevipalpus phoenicis sensu stricto (Geijskes) is redescribed and the species diagnosis established. Two former synonyms of B. phoenicis sensu lato, B. yothersi Baker and B. papayensis Baker, are resurrected and redescribed and their species diagnoses established. Brevipalpus hondurani Evans is also redescribed and diagnosed. Four new species, previously mis-identified as B. phoenicis sensu lato or B. obovatus Donnadieu, are described-B. azores sp. nov., B. feresi sp. nov., B. ferraguti sp. nov., and B. tucuman sp. nov. Four new junior synonyms of B. yothersi are listed-Brevipalpus amicus Chaudhri and B. recula Chaudhri (new synonymies), and B. mcbridei Baker and B. deleoni Pritchard and Baker (misidentifications). A key is provided to separate these species. New morphological characters significant for species separation are presented and discussed.
C1 [Beard, Jennifer J.] Queensland Museum, South Brisbane, Qld 4101, Australia.
[Beard, Jennifer J.] Univ Maryland, Dept Entomol, College Pk, MD 20742 USA.
[Ochoa, Ronald] USDA ARS, Beltsville Agr Res Ctr, SEL, Beltsville, MD 20705 USA.
[Braswell, W. Evan] USDA, APHIS, Edinburg, TX 78541 USA.
[Bauchan, Gary R.] USDA ARS, BARC, ECMU, Beltsville, MD 20705 USA.
RP Beard, JJ (reprint author), Queensland Museum, POB 3300, South Brisbane, Qld 4101, Australia.
EM jenny.beard@qm.qld.gov.au
FU Australian Biological Resources Study (ABRS); United States Department
of Agriculture's Animal and Plant Health Inspection Service (APHIS);
Plant Protection and Quarantine (PPQ) program's Centre for Plant Health
Science and Technology (CPHST); University of Maryland; Smithsonian
Natural History Museum; National Agricultural Library (NAL-USDA); USDA
National Program; APHIS
FX Beard was funded by the Australian Biological Resources Study (ABRS) and
by a Cooperative Agreement between the United States Department of
Agriculture's Animal and Plant Health Inspection Service (APHIS), Plant
Protection and Quarantine (PPQ) program's Centre for Plant Health
Science and Technology (CPHST) and the University of Maryland. The work
reported here may not necessarily express APHIS' views. We offer special
thanks to Farid Faraji, Tom Buys, Sakia van de Klundert and Karen van
Dorp in The Netherlands for their help with the collecting of, and
searching for specimens and types of, Brevipalpus phoenicis. Further
special thanks go to Nit Malikul, Debra Creel, Geoff White and David
Adamski (SEL-USDA) for their technical support; to Chris Pooley
(ECMU-USDA) and Tania Litwak (SEL-USDA) for their help with the figures
and images. In addition, we wish to thank the following for collecting
and/or lending valuable specimens: Lanni Zhang (NTDPIF, Australia); Dan
Papacek (Bugs for Bugs, Australia); Owen Seeman (QM, Australia); Bruce
Halliday (ANIC, Australia); David Hirst (SAM, Australia); Bill Crowe,
Jurgen Otto, Luke Halling ((Department of Agriculture, Australian
Government); Alba Briano, Marisa Regonat (Argentina); Mario Sato,
Jefferson Mineiro, Andre L. Matioli (Sao Paulo, Brazil); Reinaldo Feres,
Peterson R. Demite, Elizeu Castro (Rio Preto, Brazil); Giberto De
Moraes, Carlos H.W. Flectmann, Elliot Kitajima (Piracicaba, Brazil);
Denise Navia (Brasilia, Brazil); Roberto H. Gonzalez, Roberto Trincado
(Chile); Xu Yun and Qing-Hai Fan (Fujian Agriculture and Forestry
University, China); Nora Mesa, Guillermo Leon (Colombia); Hugo Aguilar,
William Villalobos and Laura Garita (Univ. de Costa Rica); James
Willmott, William McLaughlin (U. S. Botanical Gardens, Washington DC,
USA); Cal Welbourn (FSCA-DPI, Florida, USA); Ronald Brlansky, Carl C.
Childers, Jorge E. Pena (Univ. of Florida, USA); Jon Lee (Eng. High
Technology, Maryland); Jose Carlos Rodrigues (Univ. Puerto Rico);
Gabriel Otero-Colina (Mexico); Francisco Ferragut (Spain); Mike Melzer
(University of Hawaii); Robert G. Hollingsworth, Francis Zee (USDA,
Hawaii); John Hartung, Charlie Murphy, Roger Lawson (ARS-USDA); Rosita
De Leon, Eric McDonald, Gregory Evans, Joel Floyd, Annabella
Reszczynski, Yvette Perez (APHIS-USDA). Specimen collection in Northern
Territory National Parks (Australia) was made under permit (NT 29616).
Thank you to the Smithsonian Natural History Museum, National
Agricultural Library (NAL-USDA), USDA National Program and APHIS for
support and assistance with references, permits and funding for this
study. Mention of trade names or commercial products in this publication
is solely for the purpose of providing specific information and does not
imply recommendation or endorsement by the USDA; USDA is an equal
opportunity provider and employer.
NR 65
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PU MAGNOLIA PRESS
PI AUCKLAND
PA PO BOX 41383, AUCKLAND, ST LUKES 1030, NEW ZEALAND
SN 1175-5326
EI 1175-5334
J9 ZOOTAXA
JI Zootaxa
PD APR 7
PY 2015
VL 3944
IS 1
BP 1
EP +
DI 10.11646/zootaxa.3944.1.1
PG 66
WC Zoology
SC Zoology
GA CF1KR
UT WOS:000352304600001
PM 25947538
ER
PT J
AU Cottrell, TE
Tillman, PG
AF Cottrell, Ted E.
Tillman, P. Glynn
TI Spatiotemporal Distribution of Chinavia hilaris (Hemiptera:
Pentatomidae) in Corn Farmscapes
SO JOURNAL OF INSECT SCIENCE
LA English
DT Article
DE inverse distance weighting; SADIE methodology; spatial distribution;
field border; noncrop host plant
ID STINK BUGS HETEROPTERA; NEZARA-VIRIDULA HEMIPTERA; SEASONAL ABUNDANCE;
GEORGIA FARMSCAPES; EUSCHISTUS-SERVUS; PECAN ORCHARDS; TRAP CAPTURE;
FIELD EDGES; COTTON; DISPERSAL
AB The green stink bug, Chinavia hilaris (Say) (Hemiptera: Pentatomidae), is a pest of cotton in the southeastern United States but little is known concerning its spatiotemporal distribution in corn cropping systems. Therefore, the spatiotemporal distribution of C. hilaris in farmscapes, when corn was adjacent to cotton, peanut, or both, was examined weekly. The spatial patterns of C. hilaris counts were analyzed using Spatial Analysis by Distance Indices methodology. Interpolated maps of C. hilaris density were used to visualize abundance and distribution of C. hilaris in crops in corn-peanut-cotton farmscapes. This stink bug was detected in six of seven corn-cotton farmscapes, four of six corn-peanut farmscapes, and in both corn-peanut-cotton farmscapes. The frequency of C. hilaris in cotton (89.47%) was significantly higher than in peanut (7.02%) or corn (3.51%). This stink bug fed on noncrop hosts that grew in field borders adjacent to crops. The spatial distribution of C. hilaris in crops and the capture of C. hilaris adults and nymphs in pheromone-baited traps near noncrop hosts indicated that these hosts were sources of this stink bug dispersing into crops, primarily cotton. Significant aggregated spatial distributions were detected in cotton on some dates within corn-peanut-cotton farmscapes. Maps of local clustering indices depicted small patches of C. hilaris in cotton or cotton-sorghum at the peanut-cotton interface. Factors affecting the spatiotemporal dynamics of C. hilaris in corn farmscapes are discussed.
C1 [Cottrell, Ted E.] ARS, USDA, SE Fruit & Tree Nut Res Lab, Byron, GA 31008 USA.
[Tillman, P. Glynn] ARS, USDA, Crop Protect & Management Res Lab, Tifton, GA 31793 USA.
RP Cottrell, TE (reprint author), ARS, USDA, SE Fruit & Tree Nut Res Lab, 21 Dunbar Rd, Byron, GA 31008 USA.
EM Ted.Cottrell@ars.usda.gov
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U2 10
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 1536-2442
EI 2250-2645
J9 J INSECT SCI
JI J Insect Sci.
PD APR 5
PY 2015
VL 15
DI 10.1093/jisesa/iev017
PG 10
WC Entomology
SC Entomology
GA CF2WG
UT WOS:000352407800005
ER
PT J
AU Hoberg, EP
Brooks, DR
AF Hoberg, Eric P.
Brooks, Daniel R.
TI Evolution in action: climate change, biodiversity dynamics and emerging
infectious disease
SO PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
LA English
DT Article
DE ecological fitting; coevolution; host colonization; emerging infectious
disease; climate change
ID HOST-PARASITE SYSTEMS; HISTORICAL BIOGEOGRAPHY; GLOBAL CLIMATE; HUMAN
HEALTH; LAND-USE; COEVOLUTION; DIVERSIFICATION; PHYLOGEOGRAPHY;
COLONIZATION; CONSERVATION
AB Climatological variation and ecological perturbation have been pervasive drivers of faunal assembly, structure and diversification for parasites and pathogens through recurrent events of geographical and host colonization at varying spatial and temporal scales of Earth history. Episodic shifts in climate and environmental settings, in conjunction with ecological mechanisms and host switching, are often critical determinants of parasite diversification, a view counter to more than a century of coevolutionary thinking about the nature of complex host-parasite assemblages. Parasites are resource specialists with restricted host ranges, yet shifts onto relatively unrelated hosts are common during phylogenetic diversification of parasite lineages and directly observable in real time. The emerging Stockholm Paradigm resolves this paradox: Ecological Fitting (EF)-phenotypic flexibility and phylogenetic conservatism in traits related to resource use, most notably host preference-provides many opportunities for rapid host switching in changing environments, without the evolution of novel host-utilization capabilities. Host shifts via EF fuel the expansion phase of the Oscillation Hypothesis of host range and speciation and, more generally, the generation of novel combinations of interacting species within the Geographic Mosaic Theory of Coevolution. In synergy, an environmental dynamic of Taxon Pulses establishes an episodic context for host and geographical colonization.
C1 [Hoberg, Eric P.] ARS, US Natl Parasite Collect, USDA, Beltsville Area Res Ctr, Beltsville, MD 20705 USA.
[Brooks, Daniel R.] Univ Nebraska, State Museum Nat Hist, HW Manter Lab Parasitol, Lincoln, NE 68588 USA.
RP Brooks, DR (reprint author), Univ Nebraska, State Museum Nat Hist, HW Manter Lab Parasitol, Lincoln, NE 68588 USA.
EM dnlbrooks@gmail.com
FU National Science Foundation [1258010, 1256832, 1256493]
FX Some aspects discussed herein represent contributions of the Beringian
Coevolution Project and the Integrated Inventory of Biomes of the Arctic
supported by the National Science Foundation (DEB-Biodiversity Discovery
and Analysis-1258010-1256832-1256493) with funding to J. A. Cook (Museum
of Southwestern Biology), E.P.H., K. E. Galbreath (Northern Michigan
University), E. DeChaine (Western Washington University).
NR 65
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U2 122
PU ROYAL SOC
PI LONDON
PA 6-9 CARLTON HOUSE TERRACE, LONDON SW1Y 5AG, ENGLAND
SN 0962-8436
EI 1471-2970
J9 PHILOS T R SOC B
JI Philos. Trans. R. Soc. B-Biol. Sci.
PD APR 5
PY 2015
VL 370
IS 1665
AR UNSP 20130553
DI 10.1098/rstb.2013.0553
PG 7
WC Biology
SC Life Sciences & Biomedicine - Other Topics
GA CD1IY
UT WOS:000350829800003
ER
PT J
AU Zelinka, SL
Wiedenhoeft, AC
Glass, SV
Ruffinatto, F
AF Zelinka, Samuel L.
Wiedenhoeft, Alex C.
Glass, Samuel V.
Ruffinatto, Flavio
TI Anatomically informed mesoscale electrical impedance spectroscopy in
southern pine and the electric field distribution for pin-type electric
moisture metres
SO WOOD MATERIAL SCIENCE & ENGINEERING
LA English
DT Article
DE Equivalent circuit modelling; ionic diffusion; wood; impedance
spectroscopy; scalar effects; wood anatomy; earlywood; latewood;
mesoscale
ID WOOD
AB Electrical impedance spectra of wood taken at macroscopic scales below the fibre saturation point have led to inferences that the mechanism of charge conduction involves a percolation phenomenon. The pathways responsible for charge conduction would necessarily be influenced by wood structure at a variety of sub-macroscopic scales - at a mesoscale - but these questions have not yet been addressed. The goal of this work is to explore if mesoscale anatomical features in wood affect impedance spectra. Small (0.5 mm diameter) needles were used as electrodes and were configured such that the line segment between the electrodes could be oriented radially, tangentially, longitudinally and in combinations of those directions in both earlywood and latewood, including comparisons of earlywood-latewood transitions. The spectra were fit to an equivalent circuit model with a constant phase element in parallel with a resistor and Warburg element that describes ionic conduction. Finite element simulations were run to examine the effect of the fringing electric field near the electrodes. The simulations revealed that the current density was concentrated at the electrodes, resulting in a lack of dependence on electrode spacing thus explaining why measurements taken with pin-type electric moisture metres are nearly independent of electrode geometry.
C1 [Zelinka, Samuel L.; Glass, Samuel V.] US Forest Serv, Durabil & Wood Protect Res, USDA, Forest Prod Lab, Madison, WI 53726 USA.
[Wiedenhoeft, Alex C.] US Forest Serv, Ctr Wood Anat Res, USDA, Forest Prod Lab, Madison, WI 53726 USA.
[Ruffinatto, Flavio] Univ Turin, Dept Agr Forestry & Food Sci DiSAFA, Turin, Italy.
RP Zelinka, SL (reprint author), US Forest Serv, Durabil & Wood Protect Res, USDA, Forest Prod Lab, Madison, WI 53726 USA.
EM szelinka@fs.fed.us
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U1 1
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PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1748-0272
EI 1748-0280
J9 WOOD MATER SCI ENG
JI Wood Mater. Sci. Eng.
PD APR 3
PY 2015
VL 10
IS 2
BP 189
EP 196
DI 10.1080/17480272.2014.934282
PG 8
WC Materials Science, Paper & Wood
SC Materials Science
GA DB8BP
UT WOS:000368741700005
ER
PT J
AU Conkling, TJ
Belant, JL
Devault, TL
Wang, GM
Martin, JA
AF Conkling, Tara J.
Belant, Jerrold L.
Devault, Travis L.
Wang, Guiming
Martin, James A.
TI Assessment of variation of nest survival for grassland birds due to
method of nest discovery
SO BIRD STUDY
LA English
DT Article
ID CAPTURE-RECAPTURE; TALLGRASS PRAIRIE; SPIZA-AMERICANA; SITE SELECTION;
SUCCESS; BIAS; PREDATION; BEHAVIOR; POPULATIONS; SONGBIRD
AB Capsule Interpretation of nest survival estimates may be improved by incorporating the search method used to locate nests as a covariate.
Aims To compare annual survival estimates for Dickcissel Spiza americana nests and determine if incorporating search method (structured, opportunistic, or behavioural searches) improved model fit.
Methods Dickcissel nests were located using structured, opportunistic, or behavioural searches over three years (2011-2013) in Mississippi, USA. Models were used to estimate daily survival rates (DSRs) and to analyse factors influencing nest survival.
Results DSRs for Dickcissels were best explained by quadratic date, nest age, age found, and year, but incorporating search method improved model fit. Daily survival was 1.51 times greater for nests located using opportunistic search methods relative to structured searches, but was not significantly different between structured and behavioural searches.
Conclusions Survival estimates varied by search method, specifically between structured searches and opportunistically located nests. This might have arisen because heterogeneity in nest placement or parental behaviour may influence the sample of nests located with a given search method. Researchers may be able to account for this potential source of bias by including search method as a model covariate when using standard survey designs or modelling approaches.
C1 [Conkling, Tara J.; Belant, Jerrold L.; Wang, Guiming; Martin, James A.] Mississippi State Univ, Dept Wildlife Fisheries & Aquaculture, Mississippi State, MS 39762 USA.
[Devault, Travis L.] US Anim & Plant Hlth Inspect Serv, USDA, Wildlife Serv, Natl Wildlife Res Ctr, Sandusky, OH 44870 USA.
RP Conkling, TJ (reprint author), Mississippi State Univ, Dept Wildlife Fisheries & Aquaculture, Mississippi State, MS 39762 USA.
EM tjc191@msstate.edu
OI Conkling, Tara/0000-0003-1926-8106
FU Federal Aviation Administration; USDA-APHIS National Wildlife Research
Center [1374390735CA]; Forest and Wildlife Research Center; Department
of Wildlife, Fisheries, and Aquaculture at Mississippi State University
FX This work was supported by the Federal Aviation Administration and the
USDA-APHIS National Wildlife Research Center [1374390735CA]. The Forest
and Wildlife Research Center and Department of Wildlife, Fisheries, and
Aquaculture at Mississippi State University provided additional support.
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PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0006-3657
EI 1944-6705
J9 BIRD STUDY
JI Bird Stud.
PD APR 3
PY 2015
VL 62
IS 2
BP 223
EP 231
DI 10.1080/00063657.2015.1010140
PG 9
WC Ornithology
SC Zoology
GA CH3UW
UT WOS:000353957000010
ER
PT J
AU O'Malley, TB
Hay, FS
Scott, JB
Gent, DH
Shivas, RG
Pethybridge, SJ
AF O'Malley, Thomas B.
Hay, Frank S.
Scott, Jason B.
Gent, David H.
Shivas, Roger G.
Pethybridge, Sarah J.
TI Carpogenic germination of sclerotia of Sclerotinia minor and ascosporic
infection of pyrethrum flowers
SO CANADIAN JOURNAL OF PLANT PATHOLOGY
LA English
DT Article
ID PLANT HOSTS; DIVERSITY; DISEASES; INDEX; ROT
AB Carpogenic germination of sclerotia and infection of flowers by ascospores of Sclerotinia minor is rare and seldom documented in most hosts. During 2007-2009, S. minor isolates were obtained from surface-sterilized pyrethrum flowers collected from fields in Australia. The isolation frequency of S. minor from flowers in 2007, 2008 and 2009 was 15.8%, 5% and 1.4%, respectively. During these years, the prevalence of S. minor in flowers amongst pyrethrum fields varied between 10.3% and 60%. Sclerotia with apothecia, consistent in size with S. minor, were collected in one field. Colonies from individual ascospores from this isolate were identified as S. minor. A subsample of 10 S. minor isolates was selected for further studies. Phylogenetic analysis based on the internal transcribed spacer region grouped these isolates with S. minor, and distinct from published sequences of other Sclerotinia spp. Species-specific primers developed previously to differentiate the four major Sclerotinia spp. (S. sclerotiorum, S. minor, S. homoeocarpa and S. trifoliorum) were used to confirm identity. Of the 10 S. minor isolates, eight were able to carpogenically germinate in vitro. Pathogenicity of S. minor to flowers was confirmed in the greenhouse using ascospores. This study is one of the few instances documenting the ability of S. minor to infect floral tissues and the first documentation of S. minor causing flower disease of pyrethrum. These findings serve as a scaffold for further investigations into the mechanisms of flower infection by S. minor and have implications for the management of the Sclerotinia disease complex affecting pyrethrum in Australia.
C1 [O'Malley, Thomas B.; Hay, Frank S.; Scott, Jason B.] Univ Tasmania, Tasmanian Inst Agr, Burnie, Tas 7320, Australia.
[Gent, David H.] Forage Seed & Cereal Res Unit, Corvallis, OR 97331 USA.
[Gent, David H.] Oregon State Univ, Dept Bot & Plant Pathol, USDA ARS, Corvallis, OR 97331 USA.
[Shivas, Roger G.] Dept Agr & Fisheries, Dutton Pk, Qld 4102, Australia.
[Pethybridge, Sarah J.] Cornell Univ, Sch Integrat Plant Sci, Sect Plant Pathol & Plant Microbe Biol, Geneva, NY 14456 USA.
RP Pethybridge, SJ (reprint author), Cornell Univ, Sch Integrat Plant Sci, Sect Plant Pathol & Plant Microbe Biol, Geneva, NY 14456 USA.
EM sjp277@cornell.edu
RI Scott, Jason/C-2395-2014; Scott, Jason/D-4553-2011
OI Scott, Jason/0000-0001-9443-4384; Scott, Jason/0000-0001-9443-4384
FU Pyrethrum Growers' Research and Development Committee; Australian
Commonwealth Government [OT05002, PY09002]; Australian Postgraduate
Award programme of the University of Tasmania; United States Department
of Agriculture - Agricultural Research Service [CRIS 5358-21000-035-00]
FX We thank the financial supporters of our programmes, including the
Pyrethrum Growers' Research and Development Committee, matched funding
from the Australian Commonwealth Government through projects OT05002 and
PY09002 facilitated by Horticulture Australia Ltd, the Australian
Postgraduate Award programme of the University of Tasmania, and the
United States Department of Agriculture - Agricultural Research Service
CRIS 5358-21000-035-00.
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PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0706-0661
EI 1715-2992
J9 CAN J PLANT PATHOL
JI Can. J. Plant Pathol.
PD APR 3
PY 2015
VL 37
IS 2
BP 179
EP 187
DI 10.1080/07060661.2015.1036122
PG 9
WC Plant Sciences
SC Plant Sciences
GA CH4YA
UT WOS:000354038700005
ER
PT J
AU Kraus, F
Stahl, R
Pitt, W
AF Kraus, Fred
Stahl, Randal
Pitt, William
TI Chemical repellents appear non-useful for eliciting exit of brown tree
snakes from cargo
SO INTERNATIONAL JOURNAL OF PEST MANAGEMENT
LA English
DT Article
DE brown tree snake; alien species; naphthalene; carbon dioxide; essential
oils; fumigation; Boiga irregularis
ID CITRONELLA OIL; AEDES-AEGYPTI; DEGRADATION; GUAM
AB The brown tree snake (Boiga irregularis) is invasive in Guam, has imposed ecological and economic problems there, and threatens to be dispersed via cargo and vehicles to other islands in the Pacific, where it could be expected to inflict similar damages. Prevention of inadvertent snake export currently relies on cargo inspection and suppression of snake populations around ports, which are expensive and incompletely reliable. Hence, there has long been interest in developing additional tools to preclude snakes leaving in cargo, and fumigation with essential oils has been suggested for this role. We tested gaseous or aerosol deliveries of several essential oils and three other candidate irritants. We found none to work reliably in repelling snakes, and we discuss several limitations that make development of an effective fumigation tool from these chemicals improbable. Additional effort to develop an operational tool using essential oils would likely be misdirected, and effective fumigation methods for invasive snakes should be sought elsewhere.
C1 [Kraus, Fred] Mississippi State Univ, Dept Wildlife Fisheries & Aquaculture, Mississippi State, MS 39762 USA.
[Stahl, Randal] US Anim & Plant Hlth Inspect Serv, USDA, Wildlife Serv, Natl Wildlife Res Ctr, Ft Collins, CO USA.
[Pitt, William] US Anim & Plant Hlth Inspect Serv, USDA, Wildlife Serv, Natl Wildlife Res Ctr, Hilo, HI USA.
RP Kraus, F (reprint author), Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA.
EM fkraus@umich.edu
FU Department of Interior's Office for Insular Affairs
FX This work was supported by Department of Interior's Office for Insular
Affairs.
NR 27
TC 0
Z9 0
U1 4
U2 20
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0967-0874
EI 1366-5863
J9 INT J PEST MANAGE
JI Int. J. Pest Manage.
PD APR 3
PY 2015
VL 61
IS 2
BP 144
EP 152
DI 10.1080/09670874.2015.1023870
PG 9
WC Entomology
SC Entomology
GA CH5WY
UT WOS:000354107800008
ER
PT J
AU Sanchez-Murillo, R
Brooks, ES
Elliot, WJ
Boll, J
AF Sanchez-Murillo, Ricardo
Brooks, Erin S.
Elliot, William J.
Boll, Jan
TI Isotope hydrology and baseflow geochemistry in natural and human-altered
watersheds in the Inland Pacific Northwest, USA
SO ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES
LA English
DT Article
DE natural and human-altered watersheds; mean transit times; oxygen-18;
hydrogen-2; isotope hydrology; watershed management; baseflow
geochemistry
ID RING-DOWN SPECTROSCOPY; MEAN RESIDENCE TIME; TRANSIT-TIME; METEORIC
PRECIPITATION; MESOSCALE CATCHMENT; CLIMATE-CHANGE; RIVER-BASIN; FLOW
PATHS; GROUNDWATER; STREAMFLOW
AB This study presents a stable isotope hydrology and geochemical analysis in the inland Pacific Northwest (PNW) of the USA. Isotope ratios were used to estimate mean transit times (MTTs) in natural and human-altered watersheds using the FLOWPC program. Isotope ratios in precipitation resulted in a regional meteoric water line of delta H-2 = 7.42 center dot delta O-18 + 0.88 (n = 316; r(2) = 0.97). Isotope compositions exhibited a strong temperature-dependent seasonality. Despite this seasonal variation, the stream delta O-18 variation was small. A significant regression (tau = 0.11D(-1.09); r(2) = 0.83) between baseflow MTTs and the damping ratio was found. Baseflow MTTs ranged from 0.4 to 0.6 years (human-altered), 0.7 to 1.7 years (mining-altered), and 0.7 to 3.2 years (forested). Greater MTTs were represented by more homogenous aqueous chemistry whereas smaller MTTs resulted in more dynamic compositions. The isotope and geochemical data presented provide a baseline for future hydrological modelling in the inland PNW.
C1 [Sanchez-Murillo, Ricardo; Boll, Jan] Univ Idaho, Waters West Water Resources Program, Moscow, ID 83843 USA.
[Sanchez-Murillo, Ricardo] Univ Nacl, Dept Chem, Heredia, Costa Rica.
[Brooks, Erin S.; Boll, Jan] Univ Idaho, Dept Biol & Agr Engn, Moscow, ID 83843 USA.
[Elliot, William J.] USDA Forest Serv Rocky Mt Res Stn, Moscow, ID USA.
RP Sanchez-Murillo, R (reprint author), Univ Idaho, Waters West Water Resources Program, Moscow, ID 83843 USA.
EM sanc7767@vandals.uidaho.edu
FU USDA Forest Service Rocky Mountain Research Station
[10-JV-11221634-252]; University of Idaho [10-JV-11221634-252]
FX This project was funded by the joint venture agreement [No.
10-JV-11221634-252] between USDA Forest Service Rocky Mountain Research
Station and the University of Idaho.
NR 99
TC 4
Z9 4
U1 2
U2 15
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1025-6016
EI 1477-2639
J9 ISOT ENVIRON HEALT S
JI Isot. Environ. Health Stud.
PD APR 3
PY 2015
VL 51
IS 2
BP 231
EP 254
DI 10.1080/10256016.2015.1008468
PG 24
WC Chemistry, Inorganic & Nuclear; Environmental Sciences
SC Chemistry; Environmental Sciences & Ecology
GA CH5RS
UT WOS:000354093600003
PM 25692981
ER
PT J
AU Yan, XH
Fratamico, PM
Bono, JL
Baranzoni, GM
Chen, CY
AF Yan, Xianghe
Fratamico, Pina M.
Bono, James L.
Baranzoni, Gian Marco
Chen, Chin-Yi
TI Genome sequencing and comparative genomics provides insights on the
evolutionary dynamics and pathogenic potential of different H-serotypes
of Shiga toxin-producing Escherichia coli O104
SO BMC MICROBIOLOGY
LA English
DT Article
DE STEC serogroup O104; Virulence; Plasmids; Genotyping; Comparative
genomics; Next generation sequencing
ID HEMOLYTIC-UREMIC SYNDROME; VIRULENCE GENES; INTIMIN TYPES; STRAINS;
GERMANY; OUTBREAK; CATTLE; BACTERIOPHAGES; HUMANS; PHAGE
AB Background: Various H-serotypes of the Shiga toxin-producing Escherichia coli (STEC) O104, including H4, H7, H21, and H-, have been associated with sporadic cases of illness and have caused food-borne outbreaks globally. In the U.S., STEC O104: H21 caused an outbreak associated with milk in 1994. However, there is little known on the evolutionary origins of STEC O104 strains, and how genotypic diversity contributes to pathogenic potential of various O104 H-antigen serotypes isolated from different ecological niches and/or geographical regions.
Results: Two STEC O104: H21 (milk outbreak strain) and O104: H7 (cattle isolate) strains were shot-gun sequenced, and the genomes were closed. The intimin (eae) gene, involved in the attaching-effacing phenotype of diarrheagenic E. coli, was not found in either strain. Examining various O104 genome sequences, we found that two "complete" left and right end portions of the locus of enterocyte effacement (LEE) pathogenicity island were present in 13 O104 strains; however, the central portion of LEE was missing, where the eae gene is located. In O104: H4 strains, the missing central portion of the LEE locus was replaced by a pathogenicity island carrying the aidA (adhesin involved in diffuse adherence) gene and antibiotic resistance genes commonly carried on plasmids. Enteroaggregative E. coli-specific virulence genes and European outbreak O104: H4-specific stx2-encoding Escherichia P13374 or Escherichia TL-2011c bacteriophages were missing in some of the O104: H4 genome sequences available from public databases. Most of the genomic variations in the strains examined were due to the presence of different mobile genetic elements, including prophages and genomic island regions. The presence of plasmids carrying virulence-associated genes may play a role in the pathogenic potential of O104 strains.
Conclusions: The two strains sequenced in this study (O104: H21 and O104: H7) are genetically more similar to each other than to the O104: H4 strains that caused an outbreak in Germany in 2011 and strains found in Central Africa. A hypothesis on strain evolution and pathogenic potential of various H-serotypes of E. coli O104 strains is proposed.
C1 [Yan, Xianghe; Fratamico, Pina M.; Baranzoni, Gian Marco; Chen, Chin-Yi] USDA ARS, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
[Bono, James L.] USDA ARS, Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
RP Yan, XH (reprint author), USDA ARS, Eastern Reg Res Ctr, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM Xianghe.Yan@ars.usda.gov
NR 71
TC 2
Z9 2
U1 2
U2 20
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2180
J9 BMC MICROBIOL
JI BMC Microbiol.
PD APR 3
PY 2015
VL 15
AR 83
DI 10.1186/s12866-015-0413-9
PG 20
WC Microbiology
SC Microbiology
GA CF6QU
UT WOS:000352682000001
PM 25887577
ER
PT J
AU Jennings, E
van de Lindt, JW
Ziaei, E
Bahmani, P
Park, S
Shao, XY
Pang, WC
Rammer, D
Mochizuki, G
Gershfeld, M
AF Jennings, Elaina
van de Lindt, John W.
Ziaei, Ershad
Bahmani, Pouria
Park, Sangki
Shao, Xiaoyun
Pang, Weichiang
Rammer, Douglas
Mochizuki, Gary
Gershfeld, Mikhail
TI Full-Scale Experimental Verification of Soft-Story-Only Retrofits of
Wood-Frame Buildings using Hybrid Testing
SO JOURNAL OF EARTHQUAKE ENGINEERING
LA English
DT Article
DE Full-Scale Test; Hybrid Testing; Soft-Story; Wood-Frame; FEMA P-807;
Retrofit
AB The FEMA P-807 Guidelines were developed for retrofitting soft-story wood-frame buildings based on existing data, and the method had not been verified through full-scale experimental testing. This article presents two different retrofit designs based directly on the FEMA P-807 Guidelines that were examined at several different seismic intensity levels. The effects of the retrofits on damage to the upper stories were investigated. The results from the hybrid testing verify that designs following the FEMA P-807 Guidelines meet specified performance levels and appear to successfully prevent collapse at significantly higher seismic intensity levels well beyond for which they were designed. Based on the test results presented in this article, it is recommended that the soft-story-only retrofit procedure can be followed when financial or other constraints limit the retrofit from bringing the soft-story building up to current code or applying performance-based procedures.
C1 [Jennings, Elaina; van de Lindt, John W.; Bahmani, Pouria] Colorado State Univ, Dept Civil & Environm Engn, Ft Collins, CO 80523 USA.
[Ziaei, Ershad; Pang, Weichiang] Clemson Univ, Glenn Dept Civil Engn, Clemson, SC USA.
[Park, Sangki] Inst Construct Technol, Gyeonggi Do, South Korea.
[Shao, Xiaoyun] Western Michigan Univ, Civil & Construct Engn, Kalamazoo, MI 49008 USA.
[Rammer, Douglas] USDA, Forest Prod Lab, Madison, WI 53705 USA.
[Mochizuki, Gary] Simpson Strong Tie, Pleasanton, CA USA.
[Gershfeld, Mikhail] Calif State Polytech Univ Pomona, Dept Civil Engn, Pomona, CA 91768 USA.
RP van de Lindt, JW (reprint author), Colorado State Univ, Dept Civil & Environm Engn, Infrastruct, Ft Collins, CO 80523 USA.
EM jvw@engr.colostate.edu
FU National Science Foundation [EEC-1263155, CMMI-1314957]; NEES Operations
FX The material presented in this article is based upon work partially
funded by the National Science Foundation through EEC-1263155 and
CMMI-1314957 (NEES Research) and NEES Operations.
NR 10
TC 2
Z9 2
U1 2
U2 9
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 1363-2469
EI 1559-808X
J9 J EARTHQ ENG
JI J. Earthqu. Eng.
PD APR 3
PY 2015
VL 19
IS 3
BP 410
EP 430
DI 10.1080/13632469.2014.975896
PG 21
WC Engineering, Civil; Engineering, Geological; Geosciences,
Multidisciplinary
SC Engineering; Geology
GA CF1IN
UT WOS:000352298500003
ER
PT J
AU Wei, W
Xu, YL
Li, SX
Zhu, L
Song, J
AF Wei, Wei
Xu, Yanli
Li, Shuxian
Zhu, Lin
Song, Jie
TI Developing suppressive soil for root diseases of soybean with continuous
long-term cropping of soybean in black soil of Northeast China
SO ACTA AGRICULTURAE SCANDINAVICA SECTION B-SOIL AND PLANT SCIENCE
LA English
DT Article
DE suppressive soil; soybean root disease; soybean; biological control
agents
ID REAL-TIME PCR
AB Field experiments were set up in 1991 to test if suppressive soil to soybean root diseases could be developed with continuous long-term soybean cropping in black soil of Northeast China. Based on the field observation in 2007, 2009, and 2011, soybean root growth was promoted, and the severities of root disease were reduced in a field with continuous long-term cropping with soybean. Population densities of the pathogens (Fusarium spp. and Heterodera glycines) in the soybean cropping field were significantly (P < 0.05) lower than rotation of soybean with wheat or corn. Higher levels of biological control agents (Trichoderma harzianum, Pochonia chlamydosporia, or Paecilomyces lilacinus) also were found in the long-term soybean cropping field. Therefore, continuous long-term cropping of soybean in black soil of Northeast China could develop suppressive soil to soybean root diseases.
C1 [Wei, Wei; Xu, Yanli; Song, Jie] Chinese Acad Sci, Key Lab Mollisols Agroecol, Northeast Inst Geog & Agroecol, Harbin 150081, Peoples R China.
[Li, Shuxian] USDA ARS, Crop Genet Res Unit, Stoneville, MS 38776 USA.
[Zhu, Lin] Jiangsu Univ, Sch Food & Biol Engn, Zhenjiang 212013, Peoples R China.
RP Xu, YL (reprint author), Chinese Acad Sci, Key Lab Mollisols Agroecol, Northeast Inst Geog & Agroecol, Harbin 150081, Peoples R China.
EM xyll@neigaehrb.ac.cn; shuxian.li@ars.usda.gov
FU Chinese Academy of Sciences Knowledge Innovation Program [kzcx2-yw-408
3]; National Natural Science Foundation of China [30971900]; USDA-ARS
projects [6402-21220-012-00D]
FX The study was financially supported by the Chinese Academy of Sciences
Knowledge Innovation Program (kzcx2-yw-408 3), National Natural Science
Foundation of China (30971900), and partially supported by the USDA-ARS
projects (6402-21220-012-00D) to Li.
NR 16
TC 2
Z9 2
U1 4
U2 38
PU TAYLOR & FRANCIS AS
PI OSLO
PA KARL JOHANS GATE 5, NO-0154 OSLO, NORWAY
SN 0906-4710
EI 1651-1913
J9 ACTA AGR SCAND B-S P
JI Acta Agric. Scand. Sect. B-Soil Plant Sci.
PD APR 3
PY 2015
VL 65
IS 3
BP 279
EP 285
DI 10.1080/09064710.2014.992941
PG 7
WC Agronomy; Soil Science
SC Agriculture
GA CC5GB
UT WOS:000350386000001
ER
PT J
AU Azcarate, MP
Montoya, JC
Koskinen, WC
AF Azcarate, Mariela P.
Montoya, Jorgelina C.
Koskinen, William C.
TI Sorption, desorption and leaching potential of sulfonylurea herbicides
in Argentinean soils
SO JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART B-PESTICIDES FOOD
CONTAMINANTS AND AGRICULTURAL WASTES
LA English
DT Article
DE leaching potential; Argentinean soils; hysteresis; sulfonylurea
herbicides; Sorption
ID METSULFURON-METHYL; LANDSCAPE POSITION; COLORADO SOILS; ADSORPTION;
RIMSULFURON; CHLORSULFURON; NICOSULFURON; VARIABILITY; DEGRADATION;
PERSISTENCE
AB The sulfonylurea (SUs) herbicides are used to control broadleaf weeds and some grasses in a variety of crops. They have become popular because of their low application rates, low mammalian toxicity and an outstanding herbicidal activity. Sorption is a major process influencing the fate of pesticides in soil. The objective of this study was to characterize sorption-desorption of four sulfonylurea herbicides: metsulfuron-methyl (methyl 2-[(4-methoxy-6-methyl-1,3,5-triazin-2-yl)carbamoylsulfamoyl)]benzoate), sulfometuron-methyl (methyl 2-[(4,6-dimethylpyrimidin-2-yl)carbamoylsulfamoyl]benzoate), rimsulfuron (1-(4,6-dimethoxypyrimidin-2-yl)-3-(3-ethylsulfonyl-2-pyridylsulfonyl)urea) and nicosulfuron (2-[(4,6-dimethoxypyrimidin-2-yl)carbamoylsulfamoyl]-N,N-dimethylnicotinamide) from different soil horizons of different landscape positions. Sorption was studied in the laboratory by batch equilibration method. Sorption coefficients (Kd-SE) showed that rimsulfuron (Kd-SE = 1.18 to 2.08 L kg(-1)) and nicosulfuron (Kd-SE = 0.02 to 0.47 L kg(-1)) were more highly sorbed than metsulfuron-methyl (Kd-SE = 0.00 to 0.05 L kg(-1)) and sulfometuron-methyl (Kd-SE = 0.00 to 0.05 L kg(-1)). Sorption coefficients (Kd-SE) were correlated with pH and organic carbon content. All four herbicides exhibited desorption hysteresis where the desorption coefficients (Kd-D) > Kd-SE. To estimate the leaching potential, K-oc and ground-water ubiquity score (GUS) were used to calculate the half-life (t(1/2)) required to be classified as "leacher" or "nonleacher". According to the results, rimsulfuron and nicosulfuron herbicides would be classified as leachers, but factors such as landscape position, soil depth and the rate of decomposition in surface and subsurface soils could change the classification. In contrast, these factors do not affect classification of sulfometuron-methyl and metsulfuron-methyl; they would rank as leachers.
C1 [Azcarate, Mariela P.; Montoya, Jorgelina C.] Natl Inst Agr Technol INTA, Anguil Agr Expt Stn, RA-6326 Anguil, La Pampa, Argentina.
[Koskinen, William C.] ARS, Soil & Water Management Res Unit, USDA, St Paul, MN USA.
RP Azcarate, MP (reprint author), Natl Inst Agr Technol INTA, Anguil Agr Expt Stn, Ruta Nacl 5,Km 580,CC 11, RA-6326 Anguil, La Pampa, Argentina.
EM azcarate.pamela@inta.gob.ar
NR 39
TC 3
Z9 3
U1 7
U2 44
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 0360-1234
EI 1532-4109
J9 J ENVIRON SCI HEAL B
JI J. Environ. Sci. Health Part B-Pestic. Contam. Agric. Wastes
PD APR 3
PY 2015
VL 50
IS 4
BP 229
EP 237
DI 10.1080/03601234.2015.999583
PG 9
WC Environmental Sciences; Public, Environmental & Occupational Health
SC Environmental Sciences & Ecology; Public, Environmental & Occupational
Health
GA CC0TY
UT WOS:000350050900001
PM 25714454
ER
PT J
AU Jayakody, P
Parajuli, PB
Brooks, JP
AF Jayakody, Priyantha
Parajuli, Prem B.
Brooks, John P.
TI Assessing Climate Variability Impact on Thermotolerant Coliform Bacteria
in Surface Water
SO HUMAN AND ECOLOGICAL RISK ASSESSMENT
LA English
DT Article
DE climate change; bacteria; water quality; SWAT model; watershed
ID ESCHERICHIA-COLI; TRANSPORT; SOIL; SURVIVAL; RUNOFF; FATE;
PRECIPITATION; QUALITY; SLURRY; SWAT
AB This study investigated the impacts of climate variability on thermotolerant coliform bacteria (TCB) transport in the Upper Pearl River watershed (UPRW) in Mississippi. The Soil and Water Assessment Tool (SWAT) was applied using daily observed stream flows and TCB concentration data. The SWAT model was successfully calibrated and validated using both manual and automatic methods from February 2011 to June 2012 (NSE and R-2 up to 0.79). The Long Ashton Research Station Weather Generator (LARS-WG), a stochastic weather generator, with the global climate model, CCSM3, which was developed by the U.S. National Center for Atmospheric Research (NCAR) was used for future climate variability simulations. The Special Report on Emissions Scenarios (SRES) A1B of the Intergovernmental Panel on Climate Change (IPCC) was simulated for the mid (2046-2065) and late (2080-2099) 21st century. The SWAT model simulated TCB concentrations in surface water and demonstrated reasonable performances (R-2 up to 0.59 and NSE up to 0.58). During mid-century climate, average monthly TCB levels increase to 175%, while late-century average monthly TCB levels increase to 297% from the watershed. Although late-century climate variability impacts were determined more critical than mid-century climate impacts, appropriate watershed management practices are required to adapt to maintain and improve water quality.
C1 [Jayakody, Priyantha; Parajuli, Prem B.] Mississippi State Univ, Dept Agr & Biol Engn, Mississippi State, MS 39762 USA.
[Brooks, John P.] USDA ARS, Mississippi State, MS USA.
RP Parajuli, PB (reprint author), Mississippi State Univ, Dept Agr & Biol Engn, 130 Creelman St, Mississippi State, MS 39762 USA.
EM pparajuli@abe.msstate.edu
NR 58
TC 1
Z9 2
U1 0
U2 110
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1080-7039
EI 1549-7860
J9 HUM ECOL RISK ASSESS
JI Hum. Ecol. Risk Assess.
PD APR 3
PY 2015
VL 21
IS 3
BP 691
EP 706
DI 10.1080/10807039.2014.909188
PG 16
WC Biodiversity Conservation; Environmental Sciences
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA AT4NH
UT WOS:000344915500007
ER
PT J
AU Anderson, TK
Campbell, BA
Nelson, MI
Lewis, NS
Janas-Martindale, A
Killian, ML
Vincent, AL
AF Anderson, Tavis K.
Campbell, Brian A.
Nelson, Martha I.
Lewis, Nicola S.
Janas-Martindale, Alicia
Killian, Mary Lea
Vincent, Amy L.
TI Characterization of co-circulating swine influenza A viruses in North
America and the identification of a novel H1 genetic clade with
antigenic significance
SO VIRUS RESEARCH
LA English
DT Article
DE Influenza A virus; Antigenic drift; Swine; Zoonotic diseases; Vaccines;
Epidemiology
ID BINDING SITE DETERMINE; UNITED-STATES; US SWINE; INTERSPECIES
TRANSMISSION; RESPIRATORY-DISEASE; AGRICULTURAL FAIRS;
MAXIMUM-LIKELIHOOD; 2011-2012 H3N2V; COUNTY FAIR; JULY 2012
AB Multiple genetically and antigenically distinct hemagglutinin genes of the H1 and H3 influenza A virus (IAV) subtypes co-circulate in North American swine. This diversity has evolved by repeated transmission of IAVs from humans to swine and subsequent antigenic drift in swine. To understand the evolutionary dynamics of these diverse HA lineages in North American swine, we undertook a phylogenetic analysis of 1576 H1 and 607 H3 HA gene segments, as well as 834 N1 and 1293 N2 NA gene segments, and 2126 M gene segments. These data revealed yearly co-circulation of H1N1, H1N2, and H3N2 viruses, with three HA clades representing the majority of the HA sequences: of the H1 viruses, 42% were classified as H1 delta 1 and 40.6% were classified as H1 gamma; and of the H3 viruses 53% were classified as cluster IV-A H3N2. We detected a genetically distinct minor clade consisting of 37 H1 viruses isolated between 2003 and 2013, which we classified as H1 gamma-2. We estimated that this clade circulated in swine since approximately 1995, but it was not detected in swine until 2003. Though this clade only represents 1.07% of swine H1 sequences reported over the past 10 years, hemagglutination inhibition (HI) assays demonstrated that representatives of this clade of viruses are antigenically distinct, and, when measured using antigenic cartography, were as many as 7 antigenic units from other H1 gamma viruses. Therefore vaccines against the contemporary H1 gamma viruses are not likely to cross-protect against gamma-2 viruses. The long-term circulation of these gamma-2 viruses suggests that minor populations of viruses may be underreported in the national dataset given the long branch lengths and gaps in detections. The identification of these gamma-2 viruses demonstrates the need for robust surveillance to capture the full diversity IAVs in swine in the USA and the importance of antigenic drift in the diversification and emergence of new antigenic-variants in swine, which complicates vaccine design. Published by Elsevier B.V.
C1 [Anderson, Tavis K.] Georgia So Univ, Dept Biol, Statesboro, GA 30460 USA.
[Campbell, Brian A.; Vincent, Amy L.] USDA ARS, Virus & Prion Res Unit, Natl Anim Dis Ctr, Ames, IA 50010 USA.
[Nelson, Martha I.] NIH, Fogarty Int Ctr, Bethesda, MD 20892 USA.
[Nelson, Martha I.] Arizona State Univ, Sch Human Evolut & Social Change, Tempe, AZ USA.
[Lewis, Nicola S.] Univ Cambridge, Dept Zool, Cambridge, England.
[Janas-Martindale, Alicia; Killian, Mary Lea] USDA APHIS VS STAS, Natl Vet Serv Labs, Ames, IA USA.
RP Vincent, AL (reprint author), USDA ARS, Virus & Prion Res Unit, Natl Anim Dis Ctr, 1920 Dayton Ave,POB 70, Ames, IA 50010 USA.
EM amy.vincent@ars.usda.gov
OI Anderson, Tavis/0000-0002-3138-5535
FU USDA-ARS; USDA-APHIS-VS; USDA-ARS SCA [58-3625-2-103F, 58-3625-4-070];
EC [259949]
FX We gratefully acknowledge pork producers, swine veterinarians, and
laboratories for participating in the USDA Influenza Virus Surveillance
System for swine. We wish to thank Michelle Harland, Gwen Nordholm, and
Juan Carlos Mora for laboratory assistance and Jason Huegal, Jason
Crabtree and Tyler Standley for animal care and handling assistance.
Funding was provided by USDA-ARS and USDA-APHIS-VS by the Supplemental
Appropriations Act of 2009. NSL was funded by USDA-ARS SCA agreement
number 58-3625-2-103F and the EC FP7 award number 259949. TKA was funded
by USDA-ARS SCA agreement number 58-3625-4-070. Mention of trade names
or commercial products in this article is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the U.S. Department of Agriculture USDA is an equal
opportunity provider and employer.
NR 54
TC 7
Z9 7
U1 0
U2 6
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-1702
EI 1872-7492
J9 VIRUS RES
JI Virus Res.
PD APR 2
PY 2015
VL 201
BP 24
EP 31
DI 10.1016/j.virusres.2015.02.009
PG 8
WC Virology
SC Virology
GA CI8MP
UT WOS:000355026700004
PM 25701742
ER
PT J
AU Thekke-Veetil, T
Polashock, JJ
Marn, MV
Plesko, IM
Schilder, AC
Keller, KE
Martin, RR
Tzanetakis, IE
AF Thekke-Veetil, Thanuja
Polashock, James J.
Marn, Mojca V.
Plesko, Irena M.
Schilder, Annemiek C.
Keller, Karen E.
Martin, Robert R.
Tzanetakis, Ioannis E.
TI Population structure of blueberry mosaic associated virus: Evidence of
reassortment in geographically distinct isolates
SO VIRUS RESEARCH
LA English
DT Article
DE Diversity; Genetic variation; Selection; Ophiovirus; Reassortment
ID VEIN-ASSOCIATED-VIRUS; CITRUS-PSOROSIS-VIRUS; SPOTTED-WILT-VIRUS;
GENETIC-VARIABILITY; RECOMBINATION; DIVERSITY; PROTEIN; TOMATO;
TRANSMISSION; CALIFORNIA
AB The population structure of blueberry mosaic associated virus (BIMaV), a putative member of the family Ophioviridae, was examined using 61 isolates collected from North America and Slovenia. The studied isolates displayed low diversity in the movement and nucleocapsid proteins and low ratios of non-synonymous to synonymous nucleotide substitutions, indicative of strong purifying selection. Phylogenetic analyses revealed grouping primarily based on geography with some isolates deviating from this rule. Phylogenetic incongruence in the two regions, coupled with detection of reassortment events, indicated the possible role of genetic exchange in the evolution of BlMaV. (C) 2015 Elsevier B.V. All rights reserved.
C1 [Thekke-Veetil, Thanuja; Tzanetakis, Ioannis E.] Univ Arkansas Syst, Dept Plant Pathol, Div Agr, Fayetteville, AR 72701 USA.
[Polashock, James J.] USDA ARS, GIFVL, Chatsworth, NJ 08019 USA.
[Marn, Mojca V.; Plesko, Irena M.] Agr Inst Slovenia, Ljubljana, Slovenia.
[Schilder, Annemiek C.] Michigan State Univ, Dept Plant Soil & Microbial Sci, E Lansing, MI 48824 USA.
[Keller, Karen E.; Martin, Robert R.] USDA ARS, Corvallis, OR 97330 USA.
RP Tzanetakis, IE (reprint author), Univ Arkansas Syst, Dept Plant Pathol, Div Agr, Fayetteville, AR 72701 USA.
EM itzaneta@uark.edu
FU Southern Region Small Fruit Consortium [2011-13, 2012-07]; USDA-NCPN
[12-8100-1572-CA]; Slovenian Research Agency [P4-0072]; EU
[FP7-REGPOT-CT2012-316205]
FX The financial support for this study was provided by the Southern Region
Small Fruit Consortium (Projects #2011-13 and 2012-07), USDA-NCPN
(12-8100-1572-CA), Slovenian Research Agency (P4-0072) and EU
(FP7-REGPOT-CT2012-316205).
NR 46
TC 3
Z9 3
U1 2
U2 3
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-1702
EI 1872-7492
J9 VIRUS RES
JI Virus Res.
PD APR 2
PY 2015
VL 201
BP 79
EP 84
DI 10.1016/j.virusres.2015.02.022
PG 6
WC Virology
SC Virology
GA CI8MP
UT WOS:000355026700011
PM 25733053
ER
PT J
AU Calderon, FJ
Benjamin, J
Vigil, MF
AF Calderon, Francisco J.
Benjamin, Joseph
Vigil, Merle F.
TI A Comparison of Corn (Zea mays L.) Residue and Its Biochar on Soil C and
Plant Growth
SO PLOS ONE
LA English
DT Article
ID MIDINFRARED SPECTROSCOPY; ORGANIC-MATTER; GAS EMISSIONS; DAIRY MANURE;
CARBON; SEQUESTRATION; AVAILABILITY; PYROLYSIS; AMENDMENT; CELLULOSE
AB In order to properly determine the value of charring crop residues, the C use efficiency and effects on crop performance of biochar needs to be compared to the un-charred crop residues. In this study we compared the addition of corn stalks to soil, with equivalent additions of charred (300 degrees C and 500 degrees C) corn residues. Two experiments were conducted: a long term laboratory mineralization, and a growth chamber trial with proso millet plants. In the laboratory, we measured soil mineral N dynamics, C use efficiency, and soil organic matter (SOM) chemical changes via infrared spectroscopy. The 300 degrees C biochar decreased plant biomass relative to a nothing added control. The 500 degrees C biochar had little to no effect on plant biomass. With incubation we measured lower soil NO3 content in the corn stalk treatment than in the biochar-amended soils, suggesting that the millet growth reduction in the stalk treatment was mainly driven by N limitation, whereas other factors contributed to the biomass yield reductions in the biochar treatments. Corn stalks had a C sequestration use efficiency of up to 0.26, but charring enhanced C sequestration to values that ranged from 0.64 to 1.0. Infrared spectroscopy of the soils as they mineralized showed that absorbance at 3400, 2925-2850, 1737 cm(-1), and 1656 cm(-1) decreased during the incubation and can be regarded as labile SOM, corn residue, or biochar bands. Absorbances near 1600, 15001420, and 1345 cm(-1) represented the more refractory SOM moieties. Our results show that adding crop residue biochar to soil is a sound C sequestration technology compared to letting the crop residues decompose in the field. This is because the resistance to decomposition of the chars after soil amendment offsets any C losses during charring of the crop residues.
C1 [Calderon, Francisco J.; Benjamin, Joseph; Vigil, Merle F.] USDA ARS, Cent Great Plains Res Stn, Akron, CO 80720 USA.
RP Calderon, FJ (reprint author), USDA ARS, Cent Great Plains Res Stn, 40335 Co Rd GG, Akron, CO 80720 USA.
EM francisco.calderon@ars.usda.gov
NR 33
TC 3
Z9 3
U1 4
U2 39
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 2
PY 2015
VL 10
IS 4
AR e0121006
DI 10.1371/journal.pone.0121006
PG 16
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CE9BS
UT WOS:000352139000037
PM 25836653
ER
PT J
AU Folta, S
Seguin, R
Chui, K
Clark, V
Corbin, M
Goldberg, J
Heidkamp-Young, E
Lichtenstein, A
Wiker, N
Nelson, M
AF Folta, Sara
Seguin, Rebecca
Chui, Kenneth
Clark, Valerie
Corbin, Marilyn
Goldberg, Jeanne
Heidkamp-Young, Eleanor
Lichtenstein, Alice
Wiker, Nancy
Nelson, Miriam
TI NATIONAL DISSEMINATION OF THE STRONGWOMEN - HEALTHY HEARTS PROGRAM: A
RE-AIM ANALYSIS
SO ANNALS OF BEHAVIORAL MEDICINE
LA English
DT Meeting Abstract
C1 [Folta, Sara; Clark, Valerie; Goldberg, Jeanne; Heidkamp-Young, Eleanor] Tufts Univ, Friedman Sch Nutr, Boston, MA 02111 USA.
[Seguin, Rebecca] Cornell Univ, Div Nutr Sci, Ithaca, NY USA.
[Chui, Kenneth] Tufts Univ, Sch Med, Dept Publ Hlth & Community Med, Boston, MA 02111 USA.
[Corbin, Marilyn] Penn State Extens, University Pk, PA USA.
[Lichtenstein, Alice] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Wiker, Nancy] Penn State Extens, Lancaster, PA USA.
[Nelson, Miriam] Tufts Univ, Friedman Sch Nutr, Medford, MA 02155 USA.
EM sara.folta@tufts.edu
NR 0
TC 0
Z9 0
U1 0
U2 0
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0883-6612
EI 1532-4796
J9 ANN BEHAV MED
JI Ann. Behav. Med.
PD APR
PY 2015
VL 49
SU 1
BP S144
EP S144
PG 1
WC Psychology, Multidisciplinary
SC Psychology
GA DA5EH
UT WOS:000367825002055
ER
PT J
AU Pouyat, RV
Yesilonis, ID
Dombos, M
Szlavecz, K
Setala, H
Cilliers, S
Hornung, E
Kotze, DJ
Yarwood, S
AF Pouyat, Richard V.
Yesilonis, Ian D.
Dombos, Miklos
Szlavecz, Katalin
Setala, Heikki
Cilliers, Sarel
Hornung, Erzsebet
Kotze, D. Johan
Yarwood, Stephanie
TI A Global Comparison of Surface Soil Characteristics Across Five Cities:
A Test of the Urban Ecosystem Convergence Hypothesis
SO SOIL SCIENCE
LA English
DT Article
DE Anthropogenic soils; experimental network; soil carbon; urban soils
ID CHEMICAL-PROPERTIES; LAND-USE; NITROGEN; FOREST; URBANIZATION;
VEGETATION; BALTIMORE; CARBON; HOMOGENIZATION; COMPACTION
AB As part of the Global Urban Soil Ecology and Education Network and to test the urban ecosystem convergence hypothesis, we report on soil pH, organic carbon (OC), total nitrogen (TN), phosphorus (P), and potassium (K) measured in four soil habitat types (turfgrass, ruderal, remnant, and reference) in five metropolitan areas (Baltimore, Budapest, Helsinki, Lahti, Potchefstroom) across four biomes. We expected the urban soil characteristics to "converge" in comparison to the reference soils. Moreover, we expected cities in biomes with more limiting climatic conditions, or where local factors strongly affect soil characteristics, would exhibit the greatest variance across soil types within and among cities. In addition, soil characteristics related to biogenic factors (OC, TN) would vary the most because of differences in climate and human efforts to overcome limiting environmental conditions. The comparison of soils among and within the five cities suggests that anthropogenic, and to a lesser degree native, factors interact in the development of soils in urban landscapes. In particular, characteristics affected by anthropogenic processes and closely associated with biogenic processes (OC, TN) converged, while characteristics closely associated with parent material (K, P) did not converge, but rather diverged, across all soil habitat types. These results partially supported the urban ecosystem convergence hypothesis in that a convergence occurred for soil characteristics affected by climatic conditions. However, the divergence of K and P was unexpected and warrants adjusting the hypothesis to account for variations in anthropogenic effects (e.g., management) that may occur within soil habitat types impacted by humans.
C1 [Pouyat, Richard V.] Forest Serv, USDA, Res & Dev, 1400 Independence Ave SW, Washington, DC 20250 USA.
[Yesilonis, Ian D.] Forest Serv, USDA, Baltimore Ecosyst Study, Baltimore, MD USA.
[Dombos, Miklos] Hungarian Acad Sci, Agr Res Ctr, Inst Soil Sci & Agr Chem, Budapest, Hungary.
[Szlavecz, Katalin] Johns Hopkins Univ, Dept Earth & Planetary Sci, Baltimore, MD 21218 USA.
[Setala, Heikki; Kotze, D. Johan] Univ Helsinki, Dept Environm Sci, Lahti, Finland.
[Cilliers, Sarel] North West Univ, Unit Environm Sci & Management, Potchefstroom, South Africa.
[Hornung, Erzsebet] Szent Istvan Univ, Fac Vet Sci, Dept Ecol, Budapest, Hungary.
[Yarwood, Stephanie] Univ Maryland, Environm Sci & Technol, College Pk, MD 20742 USA.
RP Pouyat, RV (reprint author), Forest Serv, USDA, Res & Dev, 1400 Independence Ave SW, Washington, DC 20250 USA.
EM rpouyat@fs.fed.us
RI Kotze, David/A-2834-2008; Elisabeth, Hornung/S-4172-2016
OI Elisabeth, Hornung/0000-0002-9227-2673
FU Fulbright Specialist grant at the University of Helsinki; FEKUT of the
Hungarian Ministry of Human Resources [SZIE-AOTK-KK-UK 12007]
FX The idea for GLUSEEN was made possible by a Fulbright Specialist grant
to R. Pouyat at the University of Helsinki. The GLUSEEN network is
supported by a supplemental grant to NSF-ACI 1244820. Soil analyses were
supported by the FEKUT grant (SZIE-AOTK-KK-UK 12007) of the Hungarian
Ministry of Human Resources (E.H.). The use of trade, firm, or
corporation names in this publication is for the information and
convenience of the reader. Such use does not constitute an official
endorsement or approval by the U.S. Department of Agriculture or the
Forest Service of any product or service to the exclusion of others that
may be suitable.
NR 61
TC 1
Z9 1
U1 8
U2 20
PU LIPPINCOTT WILLIAMS & WILKINS
PI PHILADELPHIA
PA TWO COMMERCE SQ, 2001 MARKET ST, PHILADELPHIA, PA 19103 USA
SN 0038-075X
EI 1538-9243
J9 SOIL SCI
JI Soil Sci.
PD APR-MAY
PY 2015
VL 180
IS 4-5
BP 136
EP 145
DI 10.1097/SS.0000000000000125
PG 10
WC Soil Science
SC Agriculture
GA DD3YR
UT WOS:000369859900002
ER
PT J
AU Cheng, ZQ
Paltseva, A
Li, I
Morin, T
Huot, H
Egendorf, S
Su, Z
Yolanda, R
Singh, K
Lee, L
Grinshtein, M
Liu, Y
Green, K
Wai, W
Wazed, B
Shaw, R
AF Cheng, Zhongqi
Paltseva, Anna
Li, Ireyena
Morin, Tatiana
Huot, Hermine
Egendorf, Sara
Su, Zulema
Yolanda, Roxanne
Singh, Kishan
Lee, Leda
Grinshtein, Michael
Liu, Ying
Green, Kayo
Wai, Win
Wazed, Bushra
Shaw, Richard
TI Trace Metal Contamination in New York City Garden Soils
SO SOIL SCIENCE
LA English
DT Article
DE Urban; soil; trace metal; contamination
ID BLOOD LEAD LEVELS; HEAVY-METAL; URBAN SOILS; COMMUNITY GARDENS; SURFACE
SOILS; HONG-KONG; CHINA; TOPSOILS; GEOCHEMISTRY; 20TH-CENTURY
AB Urban gardening, urban agriculture, and urban farming provide healthy food and promote environmental, social, cultural, and educational benefits. However, urban soil is a natural sink for contaminants derived mainly from historical anthropogenic activities. This article reports a summary of trace metal concentrations (Cr, Co, Ni, Cu, Zn, As, Cd, and Pb) of 1,652 garden soil samples from 904 gardens in New York City. Based on the Soil Cleanup Objective (SCO) criteria developed by New York State Department of Environmental Conservation (6 NYCRR Part 375). Many of the soils analyzed exceeded the limits for Pb, Cr, As, and Cd levels. Higher percentages of home gardens are contaminated than community gardens. When accounting for Pb and As levels, about 21% of the community garden samples and 71% of the home garden samples exceed respective SCO limits. Among all home and community garden samples, less than 3% meet the criteria for unrestricted use when all trace metals are considered. There are controversies on the appropriateness of SCO criteria for urban gardening situations. Consistent soil trace metal guidelines pertaining to gardening need to be developed. Expanded soil screening, greater public awareness, and education are urgently needed to ensure safe and successful urban agriculture.
C1 [Cheng, Zhongqi; Paltseva, Anna; Li, Ireyena; Morin, Tatiana; Huot, Hermine; Egendorf, Sara; Su, Zulema; Yolanda, Roxanne; Singh, Kishan; Lee, Leda; Grinshtein, Michael; Liu, Ying; Green, Kayo; Wai, Win; Wazed, Bushra] CUNY Brooklyn Coll, Dept Earth & Environm Sci, 2900 Bedford Ave, Brooklyn, NY 11210 USA.
[Cheng, Zhongqi; Paltseva, Anna] CUNY, Grad Ctr, New York, NY USA.
[Shaw, Richard] USDA NRCS Soil Survey, Somerset, NJ USA.
RP Cheng, ZQ (reprint author), CUNY Brooklyn Coll, Dept Earth & Environm Sci, 2900 Bedford Ave, Brooklyn, NY 11210 USA.
EM zcheng@brooklyn.cuny.edu
NR 45
TC 1
Z9 1
U1 7
U2 20
PU LIPPINCOTT WILLIAMS & WILKINS
PI PHILADELPHIA
PA TWO COMMERCE SQ, 2001 MARKET ST, PHILADELPHIA, PA 19103 USA
SN 0038-075X
EI 1538-9243
J9 SOIL SCI
JI Soil Sci.
PD APR-MAY
PY 2015
VL 180
IS 4-5
BP 167
EP 174
DI 10.1097/SS.0000000000000126
PG 8
WC Soil Science
SC Agriculture
GA DD3YR
UT WOS:000369859900005
ER
PT J
AU Tishechkin, AK
Degallier, N
AF Tishechkin, Alexey K.
Degallier, Nicolas
TI Beetles (Coleoptera) of Peru: A Survey of the Families. Histeridae
SO JOURNAL OF THE KANSAS ENTOMOLOGICAL SOCIETY
LA English
DT Article
C1 [Tishechkin, Alexey K.] USDA, Systemat Entomol Lab, Natl Museum Nat Hist, Washington, DC 20013 USA.
RP Tishechkin, AK (reprint author), USDA, Systemat Entomol Lab, Natl Museum Nat Hist, MRC 168,POB 37012, Washington, DC 20013 USA.
EM atishe8@gmail.com
FU NSF-EPSCoR [66928]; University of Kansas Ecology' Evolutionary
Biology-General Research Fund
FX We are grateful to Matthew Gimmel for initiating the species list. We
wish to extend our gratitude to Angelico Asenjo, Caroline Chaboo, Zack
Falin, Greg Lamarre, Alexander Petrov and Jennifer Thomas, who provided
some recent Peruvian histerid material for our study. We acknowledge
NSF-EPSCoR #66928 (to Caroline S. Chaboo) for supporting the 'Beetles of
Peru' project and the University of Kansas Ecology' Evolutionary
Biology-General Research Fund (to Chaboo) for funding this publication.
NR 9
TC 0
Z9 0
U1 0
U2 2
PU KANSAS ENTOMOLOGICAL SOC
PI LAWRENCE
PA PO BOX 368, LAWRENCE, KS 66044 USA
SN 0022-8567
EI 1937-2353
J9 J KANSAS ENTOMOL SOC
JI J. Kans. Entomol. Soc.
PD APR
PY 2015
VL 88
IS 2
BP 173
EP 179
PG 7
WC Entomology
SC Entomology
GA CX6MY
UT WOS:000365816400009
ER
PT J
AU Nakasone, KK
AF Nakasone, Karen K.
TI Taxonomic studies in Chrysoderma, Corneromyces, Dendrophysellum,
Hyphoradulum, and Mycobonia
SO MYCOTAXON
LA English
DT Article
DE Amylocorticiales; cyanophilous basidiospores; Epithele; Favolus
curtipes; Polyporales
ID APHYLLOPHORALES; BASIDIOMYCOTA; POLYPORALES; BRAZIL; ISLAND; FUNGI; NOV
AB Eight poorly known or unusual crustose and pileate basidiomycete species were studied. These included the type specimens of three monotypic genera: Chrysoderma alboluteum from Reunion is conspecific with Cerocorticium molle; Dendrophysellum amurense from the Russian Far East is a species of Vararia; and Hyphoradulum conspicuum belongs in Pseudolagarobasidium and is the first representative of the genus from Europe. Corticium murrillii, from Mexico, is congeneric with Corneromyces kinabalui. New combinations Vararia amurensis, Pseudolagarobasidium conspicuum, and Corneromyces murrillii are proposed. Mycobonia flava and M. brunneoleuca are macroscopically similar species with diagnostically distinct basidiospore shape and size. Mycobonia disciformis is accepted in Mycothele, and Mycobonia winkleri represents a species of unknown affinities. Recent molecular phylogenetic studies indicate that Mycobonia is embedded in Polyporus sensu stricto and is a synonym of Polyporus. Transferring M. brunneoleuca and M. flava to Polyporus requires the creation of the replacement names, P. polyacanthophorus and P. epitheloides.
C1 [Nakasone, Karen K.] US Forest Serv, Ctr Forest Mycol Res, Madison, WI 53726 USA.
RP Nakasone, KK (reprint author), US Forest Serv, Ctr Forest Mycol Res, One Gifford Pinchot Dr, Madison, WI 53726 USA.
EM knakasone@fs.fed.us
NR 59
TC 1
Z9 1
U1 0
U2 0
PU MYCOTAXON LTD
PI ITHACA
PA PO BOX 264, ITHACA, NY 14851-0264 USA
SN 0093-4666
J9 MYCOTAXON
JI Mycotaxon
PD APR-JUN
PY 2015
VL 130
IS 2
BP 369
EP 397
DI 10.5248/130.369
PG 29
WC Mycology
SC Mycology
GA CW8XK
UT WOS:000365282500008
ER
PT J
AU Jew, S
Antoine, JM
Bourlioux, P
Milner, J
Tapsell, LC
Yang, YX
Jones, PJH
AF Jew, Stephanie
Antoine, Jean-Michel
Bourlioux, Pierre
Milner, John
Tapsell, Linda C.
Yang, Yuexin
Jones, Peter J. H.
TI Nutrient essentiality revisited
SO JOURNAL OF FUNCTIONAL FOODS
LA English
DT Review
DE Nutrient; Essentiality; Fibre; Plant sterols; Polyphenols
ID POLYPHENOLS; HEALTH
AB With increased understanding of the complex roles nutrients play within metabolic pathways, the purpose of this contribution is to explore the rationale for expanding the definitions and criteria for nutrient essentiality. A further objective was to develop three case study scenarios to probe issues surrounding the definition of essentiality using dietary fibre, plant sterols and polyphenols. Current definitions and criteria for "essentiality" were reviewed through an environmental scan of the scientific literature. Additionally, international regulatory bodies were asked whether the terms "nutrient" and/or "essential nutrient" are regulated in their respective jurisdictions. Regulatory bodies including the EFSA, the US FDA, HC and FSANZ were found not to currently possess regulated definitions for the term "essential nutrient". Case studies examining fibre, plant sterols and polyphenols served as a means of presenting evidence for expanding the list of functional food constituents regarded as meeting criteria for essentiality. For each example, certain instances applied where these case study bioactives met criteria of essentiality. Thus, in order to reflect advances in current science, a series of non-classical compounds known to have bioactivity should be considered for their potential essentiality under certain situations. (C) 2015 Elsevier Ltd. All rights reserved.
C1 [Jew, Stephanie; Antoine, Jean-Michel] Danone Inst Int, F-91767 Palaiseau, France.
[Bourlioux, Pierre] French Acad Pharm, F-75270 Paris 06, France.
[Milner, John] USDA, Beltsville Human Nutr Res Ctr, BARC East, Beltsville, MD 20705 USA.
[Tapsell, Linda C.] Univ Wollongong, Illawarra Hlth & Med Res Inst, Wollongong, NSW 2522, Australia.
[Yang, Yuexin] Natl Inst Nutr & Food Safety, Dept Food Nutr & Assessment, Beijing 100050, Peoples R China.
[Jones, Peter J. H.] Univ Manitoba, Richardson Ctr Funct Foods & Nutraceut, Winnipeg, MB R3T 6C5, Canada.
RP Jones, PJH (reprint author), Univ Manitoba, Richardson Ctr Funct Foods & Nutraceut, 196 Innovat Dr,SmartPk, Winnipeg, MB R3T 6C5, Canada.
EM peter.jones@umanitoba.ca
FU Danone Institute International
FX This article was supported by Danone Institute International.
NR 32
TC 5
Z9 5
U1 1
U2 5
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1756-4646
J9 J FUNCT FOODS
JI J. Funct. Food.
PD APR
PY 2015
VL 14
BP 203
EP 209
DI 10.1016/j.jff.2015.01.024
PG 7
WC Food Science & Technology
SC Food Science & Technology
GA CV8AX
UT WOS:000364500000021
ER
PT J
AU Carmody, LA
Zhao, JC
Kalikin, LM
LeBar, W
Simon, RH
Venkataraman, A
Schmidt, TM
Abdo, Z
Schloss, PD
LiPuma, JJ
AF Carmody, Lisa A.
Zhao, Jiangchao
Kalikin, Linda M.
LeBar, William
Simon, Richard H.
Venkataraman, Arvind
Schmidt, Thomas M.
Abdo, Zaid
Schloss, Patrick D.
LiPuma, John J.
TI The daily dynamics of cystic fibrosis airway microbiota during clinical
stability and at exacerbation
SO MICROBIOME
LA English
DT Article
DE Cystic fibrosis; Respiratory exacerbation; Lung microbiome; Airway
microbiome
ID PULMONARY EXACERBATION; INTRAVENOUS ANTIBIOTICS; RESPIRATORY VIRUSES;
COMMUNITIES; DIVERSITY; CHILDREN; LUNG; SPUTUM; INFECTIONS; PCR
AB Background: Recent work indicates that the airways of persons with cystic fibrosis (CF) typically harbor complex bacterial communities. However, the day-to-day stability of these communities is unknown. Further, airway community dynamics during the days corresponding to the onset of symptoms of respiratory exacerbation have not been studied.
Results: Using 16S rRNA amplicon sequencing of 95 daily sputum specimens collected from four adults with CF, we observed varying degrees of day-to-day stability in airway bacterial community structures during periods of clinical stability. Differences were observed between study subjects with respect to the degree of community changes at the onset of exacerbation. Decreases in the relative abundance of dominant taxa were observed in three subjects at exacerbation. We observed no relationship between total bacterial load and clinical status and detected no viruses by multiplex PCR.
Conclusion: CF airway microbial communities are relatively stable during periods of clinical stability. Changes in microbial community structure are associated with some, but not all, pulmonary exacerbations, supporting previous observations suggesting that distinct types of exacerbations occur in CF. Decreased abundance of species that are dominant at baseline suggests a role for less abundant taxa in some exacerbations. Daily sampling revealed patterns of change in microbial community structures that may prove useful in the prediction and management of CF pulmonary exacerbations.
C1 [Carmody, Lisa A.; Zhao, Jiangchao; Kalikin, Linda M.; LiPuma, John J.] Univ Michigan, Sch Med, Dept Pediat & Communicable Dis, Ann Arbor, MI 48109 USA.
[LeBar, William] Univ Michigan, Sch Med, Dept Pathol, Ann Arbor, MI 48109 USA.
[Simon, Richard H.] Univ Michigan, Sch Med, Dept Internal Med, Ann Arbor, MI 48109 USA.
[Venkataraman, Arvind; Schmidt, Thomas M.; Schloss, Patrick D.] Univ Michigan, Sch Med, Dept Microbiol & Immunol, Ann Arbor, MI 48109 USA.
[Abdo, Zaid] USDA ARS, South Atlantic Area, Athens, GA 30613 USA.
RP LiPuma, JJ (reprint author), Univ Michigan, Sch Med, Dept Pediat & Communicable Dis, Ann Arbor, MI 48109 USA.
EM jlipuma@umich.edu
RI Abdo, Zaid/E-5176-2017;
OI Abdo, Zaid/0000-0002-8272-7734; Schloss, Patrick/0000-0002-6935-4275;
Schmidt, Thomas/0000-0002-8209-6055
FU U.S. National Institutes of Health NHLBI [1RC1HL100809-01]; CTSA
[UL1RR024986]; Cystic Fibrosis Foundation; National Institutes of Health
NHLBI [HL007749]; Charles Woodson Pediatric Research Fund; Nesbitt
Program for Cystic Fibrosis Research
FX The authors thank the dedication of the study subjects whose generous
participation made this study possible. This work was supported by the
U.S. National Institutes of Health NHLBI grant 1RC1HL100809-01 and CTSA
grant UL1RR024986. JJL also was supported by the Cystic Fibrosis
Foundation. AV was supported by a T32 grant from National Institutes of
Health NHLBI (HL007749). Additional support was provided by the Charles
Woodson Pediatric Research Fund and the Nesbitt Program for Cystic
Fibrosis Research.
NR 33
TC 19
Z9 19
U1 0
U2 8
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 2049-2618
J9 MICROBIOME
JI Microbiome
PD APR 1
PY 2015
VL 3
AR 12
DI 10.1186/s40168-015-0074-9
PG 11
WC Microbiology
SC Microbiology
GA CU0TZ
UT WOS:000363232900001
PM 25834733
ER
PT J
AU Allen, L
Hampel, D
Shahab-Ferdows, S
AF Allen, Lindsay
Hampel, Daniela
Shahab-Ferdows, Setareh
TI Micronutrients in Human Milk: A Global Perspective
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Allen, Lindsay; Hampel, Daniela; Shahab-Ferdows, Setareh] ARS, Western Human Nutr Res Ctr, USDA, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 729.16
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722701452
ER
PT J
AU Barouei, J
Mishchuk, D
Kieffer, D
Martinic, A
Martin, R
Slupsky, C
Marco, M
AF Barouei, Javad
Mishchuk, Darya
Kieffer, Dorothy
Martinic, Alice
Martin, Roy
Slupsky, Carolyn
Marco, Maria
TI Resistant Starch and Lactobacillus Feeding Improve Metabolic Functions
in Diet-Induced Obese Mice
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Barouei, Javad; Mishchuk, Darya; Slupsky, Carolyn; Marco, Maria] Univ Calif, Food Sci & Tech, Davis, CA USA.
[Kieffer, Dorothy; Martinic, Alice; Martin, Roy; Slupsky, Carolyn] Univ Calif, Nutr, Davis, CA USA.
[Kieffer, Dorothy; Martin, Roy] ARS, WHNRC, USDA, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 924.29
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706176
ER
PT J
AU Brown-Ramos, M
Centi, A
Haytowitz, D
Booth, S
AF Brown-Ramos, Monica
Centi, Amanda
Haytowitz, David
Booth, Sarah
TI Trends in the Content and Forms of Vitamin K in Processed Foods
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Brown-Ramos, Monica; Centi, Amanda; Booth, Sarah] Tufts Univ, USDA, Human Nutr Res Ctr Aging, JM, Boston, MA 02111 USA.
[Haytowitz, David] USDA, Nutrient Data Lab, Beltsville Human Nutr Res Ctr, Beltsville, MD 20705 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 739.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702105
ER
PT J
AU Cao, J
AF Cao, Jay
TI Increased Circulating Estradiol in Mice Fed a High-Fat Diet does not
Attenuate Ovariectomy-Induced Bone Structural Deterioration
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Cao, Jay] ARS, Grand Forks Human Nutr Res Ctr, USDA, Grand Forks, ND USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 755.13
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702312
ER
PT J
AU Centi, A
Shea, K
Gundberg, C
Saltzman, E
Booth, S
AF Centi, Amanda
Shea, Kyla
Gundberg, Caren
Saltzman, Edward
Booth, Sarah
TI Decreases in Circulating Uncarboxylated Osteocalcin Are Not Associated
with HOMA-IR Changes in Humans
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Centi, Amanda; Shea, Kyla; Saltzman, Edward; Booth, Sarah] Tufts Univ, Human Nutr Res Ctr Aging, Vitamin Lab K, Boston, MA 02111 USA.
[Gundberg, Caren] Yale Univ, Sch Med, Orthopaed & Rehabil, New Haven, CT USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 758.10
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702349
ER
PT J
AU Chen, CM
Liu, JF
Huang, CL
Hsirh, AT
Weng, SF
Li, SC
Chao, TY
Chen, CY
AF Chen, C-M
Liu, J-F
Huang, C-L
Hsirh, A-T
Weng, S-F
Li, S-C
Chao, T-Y
Chen, C-Y
TI Effect of Almonds on Glucoregulation and CVD Risk Factors in Patients
with Type 2 Diabetes
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Chen, C-M; Chao, T-Y] Shih Chien Univ, Dept Food Sci Nutr & Nutraceut Biotechnol, Taipei, Taiwan.
[Liu, J-F] Chang Gung Univ Sci & Technol, Dept Nutr & Hlth Sci, Taoyuan, Taiwan.
[Huang, C-L; Weng, S-F] Taipei Med Univ Hosp, Div Endocrinol & Metab, Taipei, Taiwan.
[Hsirh, A-T] Taipei Med Univ, Shuang Ho Hosp, Dept Internal Med, Taipei, Taiwan.
[Li, S-C] Taipei Med Univ, Sch Nutr & Hlth Sci, Taipei, Taiwan.
[Chen, C-Y] Tufts Univ, HNRCA, USDA, JM, Medford, MA USA.
NR 0
TC 0
Z9 0
U1 2
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 912.3
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706001
ER
PT J
AU Chen, CY
Smith, A
Blumberg, J
Garlick, J
AF Chen, C-Y
Smith, Avi
Blumberg, Jeffrey
Garlick, Jonathan
TI Photoprotective Effects of Pistachio Antioxidants in a 3-Dimensional
Human Skin Equivalent Tissue Model
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Chen, C-Y; Blumberg, Jeffrey] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Medford, MA USA.
[Smith, Avi; Garlick, Jonathan] Tufts Univ, Ctr Integrated Tissue Engn, Sch Dent Med, Medford, MA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 922.24
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706119
ER
PT J
AU Chiu, CJ
Chang, ML
Li, T
Gensler, G
Taylor, A
AF Chiu, Chung-Jung
Chang, Min-Lee
Li, Tricia
Gensler, Gary
Taylor, Allen
TI American Minor Dietary Patterns and Age-related Macular Degeneration
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Chiu, Chung-Jung; Chang, Min-Lee; Taylor, Allen] Tufts Univ, JM, USDA, HNRCA, Boston, MA 02111 USA.
[Chiu, Chung-Jung; Taylor, Allen] Tufts Univ, Dept Ophthalmol, Boston, MA 02111 USA.
[Li, Tricia] Harvard Univ, Channing Div Network Med, Boston, MA 02115 USA.
[Gensler, Gary] EMMES Corp, AREDS Coordinating Ctr, Rockville, MD USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 736.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702049
ER
PT J
AU Claycombe, K
Vomhof-DeKrey, E
Roemmich, J
Rhen, T
Ghribi, O
AF Claycombe, Kate
Vomhof-DeKrey, Emilie
Roemmich, James
Rhen, Turk
Ghribi, Othman
TI Maternal Low Protein Diet Reduces Birth Weight And Increases Brown
Adipose Tissue UCP-1 and FNDC5 Gene Expression in Male Neonatal
Sprague-Dawley Rats
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Claycombe, Kate; Vomhof-DeKrey, Emilie; Roemmich, James] ARS, USDA, GFHNRC, Washington, DC USA.
[Rhen, Turk] Univ N Dakota, Biol, Grand Forks, ND 58201 USA.
[Ghribi, Othman] Univ N Dakota, Pharmacol, Grand Forks, ND 58201 USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 749.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702212
ER
PT J
AU Dashti, H
Aslibekyan, S
Smith, C
Arnett, D
Ordovas, J
AF Dashti, Hassan
Aslibekyan, Stella
Smith, Caren
Arnett, Donna
Ordovas, Jose
TI Seasonal and Diurnal Variations in Cardiometabolic Traits in the GOLDN
Study
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Dashti, Hassan; Smith, Caren; Ordovas, Jose] Tufts Univ, Nutr & Genom Lab, JM, USDA,Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Aslibekyan, Stella; Arnett, Donna] Univ Alabama Birmingham, Dept Epidemiol, Birmingham, AL USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 736.26
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702070
ER
PT J
AU Demmer, E
Van Loan, M
Rivera, N
Zivkovic, A
Smilowitz, J
German, J
Gertz, E
Rogers, T
AF Demmer, Elieke
Van Loan, Marta
Rivera, Nancy
Zivkovic, Angela
Smilowitz, Jennifer
German, J.
Gertz, Erik
Rogers, Tara
TI Effects of Consuming Dairy Fat vs Plant-based Fat with and without Milk
Fat Globule Membrane on Postprandial Inflammatory Markers in Overweight
and Obese Adults
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Demmer, Elieke; Van Loan, Marta; Rivera, Nancy; Zivkovic, Angela; Rogers, Tara] Univ Calif Davis, Nutr Biol, Davis, CA 95616 USA.
[Van Loan, Marta; Gertz, Erik] ARS, USDA, WHNRC, Davis, CA USA.
[Smilowitz, Jennifer; German, J.] Univ Calif Davis, Food Sci & Technol, Davis, CA 95616 USA.
[Smilowitz, Jennifer; German, J.] Univ Calif Davis, Foods Hlth Inst, Davis, CA 95616 USA.
NR 0
TC 0
Z9 0
U1 1
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 734.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702029
ER
PT J
AU Holt, R
Yim, S
Shearer, G
Keen, C
Djurica, D
Newman, J
Hackman, R
AF Holt, Roberta
Yim, Sun
Shearer, Gregory
Keen, Carl
Djurica, Dragana
Newman, John
Hackman, Robert
TI The Change in Human Microvascular Function and its Relationship to
Plasma Epoxide Content After Short-Term Walnut Intake
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Holt, Roberta; Yim, Sun; Keen, Carl; Djurica, Dragana; Newman, John; Hackman, Robert] Univ Calif Davis, Dept Nutr, Davis, CA 95616 USA.
[Shearer, Gregory] Penn State Univ, Dept Nutr Sci, University Pk, PA 16802 USA.
[Newman, John] USDA, Western Human Nutr Res Ctr, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 923.9
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706136
ER
PT J
AU Hou, RX
Parnell, L
Lai, CQ
Kamanu, F
Ordovas, J
Smith, C
AF Hou, Ruixue
Parnell, Laurence
Lai, Chao-Qiang
Kamanu, Frederick
Ordovas, Jose
Smith, Caren
TI Network Analysis Identifies NR4A2 with Gene-Environment Interactions
Influencing Inflammation Biomarkers Modified by Fatty Acid Intake in Two
Populations
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Hou, Ruixue; Parnell, Laurence; Lai, Chao-Qiang; Kamanu, Frederick; Ordovas, Jose; Smith, Caren] Tufts Univ, Nutr Genom Lab, JM USDA, HNRCA, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 750.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702225
ER
PT J
AU Hwang, D
Snodgrass, R
Huang, SR
AF Hwang, Daniel
Snodgrass, Ryan
Huang, Shurong
TI Activation of TLR2 or TLR4 Induces ER Stress Leading to
Inflammasome-mediated IL-1 beta Secretion in Monocytes
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Hwang, Daniel; Huang, Shurong] ARS, Western Human Nutr Res Ctr, USDA, Davis, CA USA.
[Hwang, Daniel; Snodgrass, Ryan] Univ Calif Davis, Dept Nutr, Davis, CA 95616 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 913.10
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706020
ER
PT J
AU Jahns, L
Raatz, S
Johnson, L
Kranz, S
Silverstein, J
Picklo, M
AF Jahns, Lisa
Raatz, Susan
Johnson, Luann
Kranz, Sibylle
Silverstein, Jeffrey
Picklo, Matthew, Sr.
TI Seafood Intake of US Adults
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Jahns, Lisa; Raatz, Susan; Johnson, Luann; Picklo, Matthew, Sr.] ARS, GFHNRC, USDA, New York, NY USA.
[Kranz, Sibylle] Univ Bristol, Ctr Exercise Nutr & Hlth Sci, Bristol BS8 1TH, Avon, England.
[Silverstein, Jeffrey] ARS, Off Natl Programs, USDA, New York, NY USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 736.30
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702074
ER
PT J
AU Jahns, L
Stote, K
Madanat, H
Cole, R
AF Jahns, Lisa
Stote, Kim
Madanat, Hala
Cole, Renee
TI Women's Motivations for Eating
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Jahns, Lisa] ARS, GFHNRC, USDA, New York, NY USA.
[Stote, Kim] SUNY Empire State Coll, Hlth Sci, New York, NY USA.
[Madanat, Hala] San Diego State Univ, Grad Sch Publ Hlth, San Diego, CA 92182 USA.
[Cole, Renee] US Army, Mil Nutr Div, Environm Med Res Inst, Washington, DC USA.
NR 0
TC 0
Z9 0
U1 2
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 736.20
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702064
ER
PT J
AU Jang, S
Sun, JH
Chen, P
Lakshman, S
Molokin, A
Harnly, J
Urban, J
Davis, C
Solano-Aguilar, G
AF Jang, Saebyeol
Sun, Jianghao
Chen, Pei
Lakshman, Sukla
Molokin, Aleksey
Harnly, James
Urban, Joseph, Jr.
Davis, Cindy
Solano-Aguilar, Gloria
TI Changes in the Intestinal Microbiota and Host Inflammatory Gene
Expression in Pigs Fed a Flavanol-Enriched Cocoa Powder
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Jang, Saebyeol; Lakshman, Sukla; Molokin, Aleksey; Urban, Joseph, Jr.; Solano-Aguilar, Gloria] ARS, Beltsville Human Nutr Res Ctr, Diet Genom & Immunol Lab, USDA, Beltsville, MD USA.
[Sun, Jianghao; Chen, Pei; Harnly, James] ARS, Beltsville Human Nutr Res Ctr, Food Composit & Methods Dev Lab, USDA, Beltsville, MD USA.
[Davis, Cindy] NIH, Off Dietary Supplements, Bethesda, MD 20892 USA.
NR 0
TC 0
Z9 0
U1 1
U2 3
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 914.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706029
ER
PT J
AU Kamanu, F
Zirkler, E
Obin, M
Ordovas, J
Parnell, L
Smith, C
AF Kamanu, Frederick
Zirkler, Estelle
Obin, Martin
Ordovas, Jose
Parnell, Laurence
Smith, Caren
TI Network-based Characterization of Inflammation Biomarkers,
Phytochemicals and Disease
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Kamanu, Frederick; Zirkler, Estelle; Obin, Martin; Ordovas, Jose; Parnell, Laurence; Smith, Caren] Tufts Univ, USDA, Human Nutr Res Ctr Aging, Inflammat Cluster & Nutr Genom Lab,JM, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 923.18
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706145
ER
PT J
AU Kao, M
Columbus, D
Suryawan, A
Steinhoff-Wagner, J
Hernandez-Garcia, A
Nguyen, H
Davis, S
Fiorotto, M
Davis, T
AF Kao, Michelle
Columbus, Daniel
Suryawan, Agus
Steinhoff-Wagner, Julia
Hernandez-Garcia, Adriana
Hanh Nguyen
Davis, Steven
Fiorotto, Marta
Davis, Teresa
TI Enteral Supplementation with beta-Hydroxy-beta-Methylbutyrate Increases
Muscle Protein Synthesis in Neonatal Pigs
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Kao, Michelle; Columbus, Daniel; Suryawan, Agus; Steinhoff-Wagner, Julia; Hernandez-Garcia, Adriana; Hanh Nguyen; Fiorotto, Marta; Davis, Teresa] ARS, USDA, Childrens Nutr Res Ctr, Houston, TX USA.
[Davis, Steven] Abbott Nutr, Columbus, OH USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 742.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702135
ER
PT J
AU Killion, E
Lee, MJ
Coleman, R
Greenberg, A
AF Killion, Elizabeth
Lee, Mi-Jeong
Coleman, Rosalind
Greenberg, Andrew
TI Adipocyte Ablation of Long-Chain Acyl-CoA Synthetase-4 (ACSL4) Protects
Against Diet-Induced Obesity
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Killion, Elizabeth; Greenberg, Andrew] Tufts Univ, Obes Metab Lab, USDA, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Lee, Mi-Jeong] Boston Univ, Sch Med, Boston, MA 02118 USA.
[Coleman, Rosalind] Univ N Carolina, Dept Nutr, Chapel Hill, NC USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 743.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702146
ER
PT J
AU Lessard, S
Rivas, D
So, K
Koh, HJ
Hirshman, M
Fielding, R
Goodyear, L
AF Lessard, Sarah
Rivas, Donato
So, Kawai
Koh, Ho-Jin
Hirshman, Michael
Fielding, Roger
Goodyear, Laurie
TI SNARK is a Novel Regulator of Muscle Mass and Myocyte Apoptosis
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Lessard, Sarah; So, Kawai; Koh, Ho-Jin; Hirshman, Michael; Goodyear, Laurie] Joslin Diabet Ctr, Integrat Physiol & Metab, Boston, MA USA.
[Rivas, Donato; Fielding, Roger] Tufts Univ, USDA Human Nutr Res Ctr, Medford, MA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 825.19
PG 2
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722703334
ER
PT J
AU Li, XL
Liu, C
Stice, C
Ip, B
Hu, KQ
Greenberg, A
Wang, XD
AF Li, Xinli
Liu, Chun
Stice, Camilla
Ip, Blanche
Hu, Kang-Quan
Greenberg, Andrew
Wang, Xiang-Dong
TI Tumor Progression Locus 2 Depletion Inhibits Hepatic Inflammation and
Steatosis and Incidence of Hepatocellular Carcinoma
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Li, Xinli; Liu, Chun; Stice, Camilla; Ip, Blanche; Hu, Kang-Quan; Greenberg, Andrew; Wang, Xiang-Dong] Tufts Univ, JM USDA HNRCA, NCB Lab, Boston, MA 02111 USA.
[Li, Xinli] Soochow Univ, Coll Med, Sch Publ Hlth, Nutr & Food Hyg, Suzhou, Peoples R China.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 752.11
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702247
ER
PT J
AU Lin, N
Smith, C
Frazier-Wood, A
Parnell, L
Noel, S
Maras, J
Lee, YC
Ma, YY
Hou, RX
Allison, M
Averill, M
Rotter, J
Tucker, K
Ordovas, J
Lai, CQ
AF Lin, Ning
Smith, Caren
Frazier-Wood, Alexis
Parnell, Laurence
Noel, Sabrina
Maras, Janice
Lee, Yu-Chi
Ma, Yi-Yi
Hou, Rui-Xue
Allison, Matthew
Averill, Michelle
Rotter, Jerome
Tucker, Katherine
Ordovas, Jose
Lai, Chao-Qiang
TI PNPLA3 Variants Are Associated with Obesity and Interact with Meat and
Dairy Intake in Hispanic and Non-Hispanic White Americans
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Lin, Ning; Smith, Caren; Parnell, Laurence; Lee, Yu-Chi; Ma, Yi-Yi; Hou, Rui-Xue; Ordovas, Jose; Lai, Chao-Qiang] Tufts Univ, Nutr Gen, JM USDA, HNRCA, Boston, MA 02111 USA.
[Frazier-Wood, Alexis] ARS, Dept Ped, USDA, Childrens Nutr Res Ctr, Houston, TX USA.
[Noel, Sabrina; Maras, Janice; Tucker, Katherine] UMass Lowell, Dept Clin Lab & Nutr Sci, Lowell, MA USA.
[Allison, Matthew] Univ Calif San Diego, Div Prev Med, San Diego, CA USA.
[Averill, Michelle] Univ Washington, Sch Pub Hlth, Seattle, WA 98195 USA.
[Rotter, Jerome] Harbor UCLA Med Ctr, LA Biomed Res Inst, Los Angeles, CA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 750.8
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702229
ER
PT J
AU Liu, C
Bronson, R
Wang, XD
AF Liu, Chun
Bronson, Roderick
Wang, Xiang-Dong
TI Effects of Lutein Supplementation on the Prevention of Colonic
Inflammation and Neoplasia in Mice
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Liu, Chun; Wang, Xiang-Dong] Tufts Univ, USDA HNRCA, Nutr & Canc Biol Lab JM, Boston, MA 02111 USA.
[Bronson, Roderick] Harvard Univ, Sch Med, Boston, MA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 767.3
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702424
ER
PT J
AU Ma, AG
He, LM
Sun, YY
Cai, J
Zhang, HQ
Wang, YJ
Wu, DY
AF Ma, Aiguo
He, Limin
Sun, Yongye
Cai, Jing
Zhang, Huaqi
Wang, Yajin
Wu, Dayong
TI Effects of iron supplementation on DNA damage of lymphocytes in rats
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Ma, Aiguo; He, Limin; Sun, Yongye; Cai, Jing; Zhang, Huaqi; Wang, Yajin] Qingdao Univ, Coll Med, Inst Human Nutr, Qingdao, Shandong, Peoples R China.
[Wu, Dayong] Tufts Univ, Human Nutr Res Ctr Aging, JM USDA, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 2
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 920.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706079
ER
PT J
AU Ma, AG
Cui, J
Jiang, Y
Sun, YY
Han, XX
Cai, J
Wu, DY
AF Ma, Aiguo
Cui, Jing
Jiang, Ying
Sun, Yongye
Han, Xiuxia
Cai, Jing
Wu, Dayong
TI Effect of maternal iron overload on offspring's liver injury in rats
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Ma, Aiguo; Cui, Jing; Jiang, Ying; Sun, Yongye; Han, Xiuxia; Cai, Jing] Qingdao Univ, Coll Med, Inst Human Nutr, Qingdao, Peoples R China.
[Wu, Dayong] Tufts Univ, JM USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 2
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 754.18
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702291
ER
PT J
AU Makarem, N
Nicholson, J
Bandera, E
McKeown, N
Parekh, N
AF Makarem, Nour
Nicholson, Joseph
Bandera, Elisa
McKeown, Nicola
Parekh, Niyati
TI Whole Grains and Cereal Fiber in Relation to Cancer Risk: A Systematic
Review
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Makarem, Nour; Parekh, Niyati] NYU, Dept Nutr, New York, NY 10003 USA.
[Nicholson, Joseph] NYU, Sch Med, Dept Med Lib, New York, NY 10003 USA.
[Bandera, Elisa] Rutgers State Univ, Canc Inst New Jersey, Piscataway, NJ 08855 USA.
[McKeown, Nicola] Tufts Univ, Jean Mayer USDA HNRCA, Medford, MA USA.
NR 0
TC 0
Z9 0
U1 1
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 906.27
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722705450
ER
PT J
AU Marini, J
Didelija, I
AF Marini, Juan
Didelija, Inka
TI Arginine disposal in health and endotoxemia
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Marini, Juan; Didelija, Inka] Baylor Coll Med, Crit Care Med, Houston, TX 77030 USA.
[Marini, Juan; Didelija, Inka] Baylor Coll Med, USDA ARS, Childrens Nutr Res Ctr, Houston, TX 77030 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 742.14
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702143
ER
PT J
AU Martinic, A
Mishchuk, D
Berouei, J
Kieffer, D
Martin, R
Marco, M
Slupsky, C
AF Martinic, Alice
Mishchuk, Darya
Berouei, Javad
Kieffer, Dorothy
Martin, Roy
Marco, Maria
Slupsky, Carolyn
TI NMR-Based Metabolomic Profiles of Mice Fed a High Fat Diet and
Supplemented with Resistant Starch and/or Lactobacillus
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Martinic, Alice; Kieffer, Dorothy; Slupsky, Carolyn] Univ Calif Davis, Nutr, Davis, CA 95616 USA.
[Mishchuk, Darya; Berouei, Javad; Marco, Maria; Slupsky, Carolyn] Univ Calif Davis, Food Sci & Technol, Davis, CA 95616 USA.
[Kieffer, Dorothy; Martin, Roy] ARS, Obes & Metab Res Unit, USDA, Western Human Nutr Res Ctr, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 924.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706151
ER
PT J
AU Mckay, D
Chen, CYO
Rasmussen, H
Blumberg, J
AF Mckay, Diane
Chen, C-Y Oliver
Rasmussen, Helen
Blumberg, Jeffrey
TI Whole Eggs Enhance Antioxidant Activity When Combined With Energy Dense,
Cooked Breakfast Foods
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Mckay, Diane; Chen, C-Y Oliver; Rasmussen, Helen; Blumberg, Jeffrey] Tufts Univ, Antioxidants Res Lab, Jean Mayer USDA, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 924.22
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706169
ER
PT J
AU McKay, D
Chen, CYO
Collins, FW
Blumberg, J
AF McKay, Diane
Chen, C-Y Oliver
Collins, F. William
Blumberg, Jeffrey
TI Avenanthramide-Enriched Oats Have an Anti-Inflammatory Action: A Pilot
Clinical Trial
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [McKay, Diane; Chen, C-Y Oliver; Blumberg, Jeffrey] Tufts Univ, Antioxidants Res Lab, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Collins, F. William] Agr & Agri Food Canada AAFC, Bioprod & Bioproc, Ottawa, ON, Canada.
NR 0
TC 0
Z9 0
U1 2
U2 6
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 922.18
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706113
ER
PT J
AU Miernyk, J
Wilson, R
Johnston, M
Thelen, J
AF Miernyk, Jan
Wilson, Rashaun
Johnston, Mark
Thelen, Jay
TI Systems Analysis of Soybean Seed Development; Lipid Body Ontogeny
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Miernyk, Jan; Johnston, Mark] ARS, Plant Genet Res Unit, USDA, Columbia, MO USA.
[Miernyk, Jan; Wilson, Rashaun; Thelen, Jay] Univ Missouri, Biochem, Columbia, MO USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 887.9
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722705040
ER
PT J
AU Miller, M
Fisher, D
Kelly, M
Bielinski, D
Shukitt-Hale, B
AF Miller, Marshall
Fisher, Derek
Kelly, Megan
Bielinski, Donna
Shukitt-Hale, Barbara
TI Effects of dietary blueberry on cognition and in vivo and in vitro
inflammatory status
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Miller, Marshall; Fisher, Derek; Kelly, Megan; Bielinski, Donna; Shukitt-Hale, Barbara] Tufts Univ, Neurosci & Aging, USDA, ARS,HNRCA, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 1
U2 3
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 900.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722705304
ER
PT J
AU Mujica-Coopman, M
Farias, D
Brito, A
Allen, L
Kac, G
Lamers, Y
AF Mujica-Coopman, Maria
Farias, Dayana
Brito, Alex
Allen, Lindsay
Kac, Gilberto
Lamers, Yvonne
TI Vitamin B6 status and its relationship with polyunsaturated fatty acid
concentrations during pregnancy
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Mujica-Coopman, Maria; Lamers, Yvonne] Univ British Columbia, Fac Land & Food Syst, Food Nutr & Hlth, Vancouver, BC V5Z 1M9, Canada.
[Mujica-Coopman, Maria] Univ Chile, INTA, Concepcion, Chile.
[Farias, Dayana; Kac, Gilberto] Univ Fed Rio de Janeiro, Nutr Inst, BR-21941 Rio De Janeiro, Brazil.
[Brito, Alex; Allen, Lindsay] ARS, USDA, WHNRC UC, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 919.21
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706075
ER
PT J
AU Nickle, M
Pehrsson, P
AF Nickle, Melissa
Pehrsson, Pamela
TI Variability of Portion Sizes within Popular Italian Restaurant Chains
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Nickle, Melissa; Pehrsson, Pamela] USDA, Nutrient Data Lab, Beltsville, MD 20705 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 739.3
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702102
ER
PT J
AU Olanrewaju, H
Purswell, J
Collier, S
Branton, S
AF Olanrewaju, Hammed
Purswell, Joseph
Collier, Stephanie
Branton, Scott
TI Effects of Light Sources and Intensity on Blood Physiological Variables
of Broilers Grown to Heavy Weights
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Olanrewaju, Hammed; Purswell, Joseph; Collier, Stephanie; Branton, Scott] USDA ARS, Poultry Res Unit, Starkville, MS USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 787.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702433
ER
PT J
AU Parker, E
Clemens, J
Moshfegh, A
AF Parker, Elizabeth
Clemens, John
Moshfegh, Alanna
TI Beverage Groups Consumed by US Children and Their Impact on Nutrient
Intake
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Parker, Elizabeth; Clemens, John; Moshfegh, Alanna] USDA, FSRG, Beltsville, MD 20705 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 739.8
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702107
ER
PT J
AU Pehrsson, P
Patterson, K
Haytowitz, D
Phillips, K
AF Pehrsson, Pamela
Patterson, Kristine
Haytowitz, David
Phillips, Katherine
TI Total Carbohydrate Determinations in USDA's National Nutrient Database
for Standard Reference
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Pehrsson, Pamela; Patterson, Kristine; Haytowitz, David] ARS, Nutrient Data Lab, USDA, Beltsville, MD USA.
[Phillips, Katherine] Virginia Tech, Food Anal Lab Control Ctr, Blacksburg, VA USA.
NR 0
TC 0
Z9 0
U1 2
U2 4
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 740.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702113
ER
PT J
AU Pfalzer, A
Iyer, L
Parnell, L
Tai, A
Liu, ZH
Mason, J
Crott, J
AF Pfalzer, Anna
Iyer, Lax
Parnell, Laurence
Tai, Albert
Liu, Zhenhua
Mason, Joel
Crott, Jimmy
TI Obesity-induced Intestinal Tumorigenesis is Associated with Inflammatory
Cytokines and Activation of Pro-tumorigenic Signaling Pathways in the
Colon
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Pfalzer, Anna; Parnell, Laurence; Mason, Joel; Crott, Jimmy] Tufts Univ, HNRCA, Canc Cluster, Boston, MA 02111 USA.
[Iyer, Lax; Tai, Albert; Mason, Joel] Tufts Univ, Sch Med, Boston, MA 02111 USA.
[Pfalzer, Anna; Mason, Joel; Crott, Jimmy] Tufts Univ, Sch Nutr Sci & Policy, Boston, MA 02111 USA.
[Liu, Zhenhua] UMass Amherst, Nutr, Amherst, MA USA.
[Parnell, Laurence] ARS, USDA, Boston, MA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 753.16
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702273
ER
PT J
AU Picklo, M
Rousova, J
Kubatova, A
Al-Naqeb, G
AF Picklo, Matthew
Rousova, Jana
Kubatova, Alena
Al-Naqeb, Ghanya
TI Pulicaria jaubertii Extract Prevents Triglyceride Deposition in 3T3-L1
Adipocytes
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Picklo, Matthew] ARS, USDA, Grand Forks Human Nutr Res Ctr, Grand Forks, ND USA.
[Picklo, Matthew; Rousova, Jana; Kubatova, Alena] Univ N Dakota, Chem, Grand Forks, ND 58201 USA.
[Al-Naqeb, Ghanya] Sanaa Univ, Food Sci & Technol, Sanaa, Yemen.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 924.19
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706166
ER
PT J
AU Poulose, S
Bielinski, D
Crott, J
Roe, A
Thangthaeng, N
Shukitt-Hale, B
AF Poulose, Shibu
Bielinski, Donna
Crott, Jimmy
Roe, Annie
Thangthaeng, Nopporn
Shukitt-Hale, Barbara
TI Effects of aging and walnut-rich diet on DNA methylation and expression
of immediate-early genes in critical brain regions.
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Poulose, Shibu; Bielinski, Donna; Crott, Jimmy; Roe, Annie; Thangthaeng, Nopporn; Shukitt-Hale, Barbara] Tufts Univ, HNRCA, Neurosci & Aging, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 749.7
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702218
ER
PT J
AU Reginaldo, C
Jacques, P
Scott, T
Oxenkrug, G
Selhub, J
Paul, L
AF Reginaldo, Christina
Jacques, Paul
Scott, Tammy
Oxenkrug, Gregory
Selhub, Jacob
Paul, Ligi
TI Xanthurenic acid is associated with higher insulin resistance and higher
odds of diabetes
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Reginaldo, Christina] Tufts Univ, Friedman Sch Nutr, Boston, MA 02111 USA.
[Jacques, Paul; Scott, Tammy; Selhub, Jacob; Paul, Ligi] Tufts Univ, JM USDA HNRCA, Boston, MA 02111 USA.
[Oxenkrug, Gregory] Tufts Univ, Sch Med, Psychiat, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 919.20
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706074
ER
PT J
AU Roemmich, J
Johnson, L
AF Roemmich, James
Johnson, LuAnn
TI Visitation and Physical Activity Intensity at Rural and Urban Parks
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Roemmich, James; Johnson, LuAnn] ARS, Grand Forks Human Nutr Res Ctr, USDA, Grand Forks, ND USA.
NR 0
TC 0
Z9 0
U1 1
U2 3
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 902.24
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722705377
ER
PT J
AU Rogers, T
Demmer, E
Rivera, N
Gertz, E
Zivkovic, A
Smilowitz, J
German, J
Van Loan, M
AF Rogers, Tara
Demmer, Elieke
Rivera, Nancy
Gertz, Erik
Zivkovic, Angela
Smilowitz, Jennifer
German, J.
Van Loan, Marta
TI Post-Prandial Changes in Bone Turnover after High Saturated Fat
Challenge Meals
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Rogers, Tara; Demmer, Elieke; Rivera, Nancy; Zivkovic, Angela] Univ Calif Davis, Dept Nutr, Davis, CA 95616 USA.
[Gertz, Erik; Van Loan, Marta] ARS, USDA, Western Human Nutr Res Ctr, Davis, CA USA.
[Smilowitz, Jennifer; German, J.] Univ Calif Davis, Foods Hlth Inst, Davis, CA 95616 USA.
[Smilowitz, Jennifer; German, J.] Univ Calif Davis, Dept Food Sci & Technol, Davis, CA 95616 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 734.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702027
ER
PT J
AU Rust, B
Gray, I
Kieffer, D
Newman, J
Cooper, D
Welch, L
Horn, W
Marco, M
Pelkman, C
Keim, N
AF Rust, Bret
Gray, Ira
Kieffer, Dorothy
Newman, John
Cooper, Danielle
Welch, Lucas
Horn, William
Marco, Maria
Pelkman, Christine
Keim, Nancy
TI Short Chain Fatty Acid Production and Glucose Responses by Methane
Producers
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Rust, Bret; Kieffer, Dorothy; Newman, John; Cooper, Danielle; Keim, Nancy] Univ Calif Davis, Nutr, Davis, CA USA.
[Gray, Ira; Newman, John; Welch, Lucas; Horn, William; Keim, Nancy] USDA ARS, WHNRC, Davis, CA USA.
[Marco, Maria] Univ Calif Davis, Food Sci, Davis, CA USA.
[Pelkman, Christine] Ingredion, Nutr R&D, Westchester, IL USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 744.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702167
ER
PT J
AU Sawicki, C
Livingston, K
Obin, M
Roberts, S
Chung, M
McKeown, N
AF Sawicki, Caleigh
Livingston, Kara
Obin, Martin
Roberts, Susan
Chung, Mei
McKeown, Nicola
TI Dietary Fiber and the Human Gut Microbiome: Application of Evidence
Mapping Methodology
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Sawicki, Caleigh; Livingston, Kara; Obin, Martin; Roberts, Susan; McKeown, Nicola] Tufts Univ, Nutr Epidemiol, JM, USDA,Human Nutr Res Ctr Aging, Boston, MA USA.
[Sawicki, Caleigh; McKeown, Nicola] Tufts Univ, Friedman Sch Nutr Sci & Policy, Boston, MA 02111 USA.
[Chung, Mei] Tufts Univ, Sch Med, Dept Publ Hlth & Community Med, Nutr Infect Unit, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 2
U2 3
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 736.27
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702071
ER
PT J
AU Schlossman, N
Batra, P
Balan, E
Pruzensky, W
Saltzman, E
Roberts, S
AF Schlossman, Nina
Batra, Payal
Balan, Ela
Pruzensky, William
Saltzman, Edward
Roberts, Susan
TI Effects Of Two Ready to Use Supplementary Foods (RUSF) Containing
Different Levels Of Dairy Protein On Mother's Nutritional Status In
Rural Guinea-Bissau
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Schlossman, Nina] Res Global Food & Nutr Inc, Washington, DC USA.
[Batra, Payal; Saltzman, Edward; Roberts, Susan] Tufts Univ, Jean Mayer USDA, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Balan, Ela; Pruzensky, William] Res Int Partnership Human Dev, Leesburg, VA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 898.40
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722705288
ER
PT J
AU Schlossman, N
Batra, P
Balan, E
Pruzensky, W
Shae, K
Schleicher, M
Urban, L
Saltzman, E
Roberts, S
AF Schlossman, Nina
Batra, Payal
Balan, Ela
Pruzensky, William
Shae, Kyla
Schleicher, Molly
Urban, Lorien
Saltzman, Edward
Roberts, Susan
TI The Effectiveness of Two Ready to Use Supplementary Foods (RUSFs)
Differing in Dairy Protein Content on Growth and Nutritional Status of
Young Children: A Pilot Study in Preschools in Guinea-Bissau
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Schlossman, Nina] Res Global Food & Nutr Inc, Washington, DC USA.
[Batra, Payal; Shae, Kyla; Schleicher, Molly; Urban, Lorien; Saltzman, Edward; Roberts, Susan] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Balan, Ela; Pruzensky, William] Res Int Partnership Human Dev, Leesburg, VA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 898.15
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722705263
ER
PT J
AU Scott, T
Chen, CYO
Vishwanathan, R
Mohn, E
Roe, A
Johnson, E
AF Scott, Tammy
Chen, C-Y Oliver
Vishwanathan, Rohini
Mohn, Emily
Roe, Annie
Johnson, Elizabeth
TI Resistance of LDL against Oxidation is Related to Macular Pigment
Density and Cognition in Healthy Older Adults
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Scott, Tammy; Chen, C-Y Oliver; Vishwanathan, Rohini; Mohn, Emily; Roe, Annie; Johnson, Elizabeth] Tufts Univ, JM USDA, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 900.7
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722705309
ER
PT J
AU Shaul, M
Shukitt-Hale, B
Rosenberg, I
AF Shaul, Merav
Shukitt-Hale, Barbara
Rosenberg, Irwin
TI Age-related changes in circulating microRNA profile and brain
endothelial microvascular cell response to oxidative insult
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Shaul, Merav; Shukitt-Hale, Barbara; Rosenberg, Irwin] Tufts Univ, JM USDA HNRCA, Neurosci & Aging Lab, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 786.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702431
ER
PT J
AU Shea, K
Booth, S
Brinkley, T
Kritchevsky, S
AF Shea, Kyla
Booth, Sarah
Brinkley, Tina
Kritchevsky, Stephen
TI Vitamin K Status in Black and White Older Adults and its Relationship
with Cardiovascular Disease Risk
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Shea, Kyla; Booth, Sarah] Tufts Univ, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Brinkley, Tina; Kritchevsky, Stephen] Wake Forest Med Ctr, Sticht Ctr Aging, Winston Salem, NC USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 906.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722705429
ER
PT J
AU Shearer, G
Newman, J
Holt, R
Keen, C
Hackman, R
AF Shearer, Gregory
Newman, John
Holt, Roberta
Keen, Carl
Hackman, Robert
TI Walnuts Rearrange the Lipid Mediator Composition of Lipoproteins
Independent of Changes in Fatty Acid Precursors
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Shearer, Gregory] Penn State Univ, Nutr Sci, University Pk, PA 16802 USA.
[Newman, John] USDA, Obes & Metab Res Unit, Western Human Nutr Res Ctr, Davis, CA USA.
[Newman, John; Holt, Roberta; Keen, Carl; Hackman, Robert] Univ Calif Davis, Internal Med, West Coast Metabol Ctr, Nutr, Davis, CA 95616 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 715.10
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722701099
ER
PT J
AU Somanchi, M
Simpson, T
Exler, J
Pehrsson, P
AF Somanchi, Meena
Simpson, Taylor
Exler, Jacob
Pehrsson, Pamela
TI Comparison of Select Nutrients in the Nutrition Facts Panel to
Analytical Values in Greek Yogurt
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Somanchi, Meena; Simpson, Taylor; Exler, Jacob; Pehrsson, Pamela] ARS, Nutrient Data Lab BHNRC, NEA, USDA, Beltsville, MD USA.
NR 0
TC 0
Z9 0
U1 2
U2 5
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 734.10
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702035
ER
PT J
AU Steinfeldt, L
Martin, C
Rhodes, D
Yirenkyi, K
Mattey, P
Lacomb, R
Moshfegh, A
AF Steinfeldt, Lois
Martin, Carrie
Rhodes, Donna
Yirenkyi, Kojoe
Mattey, Pranitha
Lacomb, Randy
Moshfegh, Alanna
TI Enhancing USDA's Food and Nutrient Database for Dietary Studies with
Branded Food Product Label Data
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Steinfeldt, Lois; Martin, Carrie; Rhodes, Donna; Yirenkyi, Kojoe; Mattey, Pranitha; Lacomb, Randy; Moshfegh, Alanna] ARS, Food Surveys Res Grp, Beltsville Human Nutr Res Ctr, USDA, Beltsville, MD USA.
NR 0
TC 0
Z9 0
U1 2
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 741.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702120
ER
PT J
AU Stote, K
Sweeney-Nixon, M
Kean, T
Baer, D
Novotny, J
Flaherty, NL
Chandrasekaran, A
Carrico, P
Melendez, JA
Gottschall-Pass, K
AF Stote, K.
Sweeney-Nixon, M.
Kean, T.
Baer, D.
Novotny, J.
Flaherty, N. L.
Chandrasekaran, A.
Carrico, P.
Melendez, J. A.
Gottschall-Pass, K.
TI The Effect of Wild Blueberry Juice Consumption in Women at Risk for Type
2 Diabetes
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Stote, K.] SUNY Empire State, Hlth Sci, Saratoga Springs, NY USA.
[Sweeney-Nixon, M.; Kean, T.; Gottschall-Pass, K.] Univ Prince Edward Isl, Biol, Charlottetown, PE C1A 4P3, Canada.
[Baer, D.; Novotny, J.] ARS, BHNRC, USDA, Beltsville, MD USA.
[Flaherty, N. L.; Chandrasekaran, A.; Melendez, J. A.] SUNY Polytech Inst, Biosci, Utica, NY USA.
[Carrico, P.] SUNY Albany, Biol, Albany, NY 12222 USA.
RI Shakerley, Nicole/C-1245-2015
OI Shakerley, Nicole/0000-0002-7880-3343
NR 0
TC 0
Z9 0
U1 3
U2 8
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 923.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722706131
ER
PT J
AU Tande, D
Kehn, A
Whigham, L
Roemmich, J
AF Tande, Desiree
Kehn, Andre
Whigham, Leah
Roemmich, James
TI Relationship of Nutritional Risk, Body Mass Index (BMI), and Cognitive
Functioning in Preschoolers
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Tande, Desiree] Univ N Dakota, Nutr & Dietet, Grand Forks, ND 58201 USA.
[Kehn, Andre] Univ N Dakota, Psychol, Grand Forks, ND 58201 USA.
[Whigham, Leah] Univ Texas El Paso, Paso del Norte Inst Hlth Living, El Paso, TX 79968 USA.
[Roemmich, James] ARS, Grand Forks Human Nutr Res Ctr, USDA, NPA, Grand Forks, ND USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 901.17
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722705341
ER
PT J
AU Taussig, D
Combs, G
AF Taussig, David
Combs, Gerald, Jr.
TI Conditional Effect of Selenium on the Mammalian Hind Gut Microbiota
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Taussig, David; Combs, Gerald, Jr.] ARS, USDA, Grand Forks, ND USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 759.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702356
ER
PT J
AU Tepaamorndech, S
Kirschke, C
Pedersen, T
Keyes, W
Newman, J
Huang, LP
AF Tepaamorndech, Surapun
Kirschke, Catherine
Pedersen, Theresa
Keyes, William
Newman, John
Huang, Liping
TI Increased Accumulation of Long-chain Fatty Acids in Skeletal Muscle May
Contribute Insulin Resistance in Znt7 Knockout Mice
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Kirschke, Catherine; Pedersen, Theresa; Keyes, William; Newman, John; Huang, Liping] ARS, Obes & Metab Res Unit, USDA, Western Human Nutr Res Ctr, Davis, CA USA.
[Tepaamorndech, Surapun; Huang, Liping] Univ Calif Davis, Integrat Genet & Genom Grad Grp, Davis, CA USA.
[Newman, John; Huang, Liping] Univ Calif Davis, Nutr, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 748.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702209
ER
PT J
AU Thangthaeng, N
Miller, M
Poulose, S
Bielinski, D
Fisher, D
Shukitt-Hale, B
AF Thangthaeng, Nopporn
Miller, Marshall
Poulose, Shibu
Bielinski, Donna
Fisher, Derek
Shukitt-Hale, Barbara
TI Differential effects of blueberry polyphenols on age-associated
neuroinflammation and cognition.
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Thangthaeng, Nopporn; Miller, Marshall; Poulose, Shibu; Bielinski, Donna; Fisher, Derek; Shukitt-Hale, Barbara] Tufts Univ, HNRCA, Neurosci & Aging, ARS,USDA, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 3
U2 8
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 756.8
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702328
ER
PT J
AU Thomas, R
Ahuja, J
AF Thomas, Robin
Ahuja, Jaspreet
TI How Do Popular Breakfast Cereals Measure Up?
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Thomas, Robin; Ahuja, Jaspreet] ARS, Nutrient Data Lab, USDA, Beltsville Human Nutr Res Ctr, Beltsville, MD USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 739.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702103
ER
PT J
AU Whitcomb, E
Taylor, A
AF Whitcomb, Elizabeth
Taylor, Allen
TI Ubiquitination Catalyzed by the Ubiquitin Conjugating Enzyme, UbcH7
Inhibits the Degradation of Proteasome Substrates
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Whitcomb, Elizabeth; Taylor, Allen] Tufts Univ, HNRCA, Lab Nutr & Vis Res, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 883.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722704405
ER
PT J
AU Wilcox, C
Alkan, Z
Hawkes, W
AF Wilcox, Christina
Alkan, Zeynep
Hawkes, Wayne
TI Selenoprotein W Inhibits the c-Met Oncogene by Regulating Receptor
Ubiquitination
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Wilcox, Christina; Hawkes, Wayne] Univ Calif Davis, Nutr, Davis, CA 95616 USA.
[Alkan, Zeynep] USDA ARS, Nutr, Western Human Nutr Res Ctr, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 752.17
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702253
ER
PT J
AU Zeng, HW
Claycombe, K
Reindl, K
AF Zeng, Huawei
Claycombe, Kate
Reindl, Katie
TI Butyrate and deoxycholic acid play common and distinct roles in HCT116
human colon cell proliferation
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Zeng, Huawei; Claycombe, Kate] ARS, GFHNRC, USDA, Grand Forks, ND USA.
[Reindl, Katie] N Dakota State Univ, Dept Biol Sci, Fargo, ND 58108 USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 752.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702240
ER
PT J
AU Zeng, HW
Grapov, D
Jackson, M
Fahrmann, J
Fiehn, O
Combs, G
AF Zeng, Huawei
Grapov, Dmitry
Jackson, Matthew
Fahrmann, Johannes
Fiehn, Oliver
Combs, Gerald, Jr.
TI Integrated Datasets Characterize Metabolic Interactions between Mouse's
Colonic Mucosa, Colonic-Cecal Contents and Feces
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, ASIP, ASN, ASPET
C1 [Zeng, Huawei; Combs, Gerald, Jr.] ARS, GFHNRC, USDA, Grand Forks, ND 58203 USA.
[Grapov, Dmitry; Fahrmann, Johannes; Fiehn, Oliver] Univ Calif Davis, West Coast Metabol Ctr, Davis, CA 95616 USA.
[Jackson, Matthew] Hills Pet Nutr Inc, Res Dept, Topeka, KS 66601 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 748.7
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CS0BT
UT WOS:000361722702211
ER
PT J
AU Arias-Gastelum, M
Lichtenstein, A
Matthan, N
Vega-Lopez, S
AF Arias-Gastelum, Mayra
Lichtenstein, Alice
Matthan, Nirupa
Vega-Lopez, Sonia
TI Dietary Fat Quality and Lipophilic Index among Mexican-American Adults
with and without Metabolic Syndrome
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Arias-Gastelum, Mayra; Vega-Lopez, Sonia] Arizona State Univ, Sch Nutr & Hlth Promot, Phoenix, AZ USA.
[Lichtenstein, Alice; Matthan, Nirupa] Tufts Univ, USDA, Human Nutr Res Ctr Aging, Cardiovasc Nutr Lab,JM, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 598.21
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505142
ER
PT J
AU Bowman, S
Friday, J
Clemens, J
Moshfegh, A
AF Bowman, Shanthy
Friday, James
Clemens, John
Moshfegh, Alanna
TI Vegetables, Fruit, and Whole Grains Consumption by US Adults at Meals
and Snacks: WWEIA, NHANES 2011-12
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Bowman, Shanthy; Friday, James; Clemens, John; Moshfegh, Alanna] ARS, USDA, Beltsville, MD USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 587.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470504466
ER
PT J
AU Bukhari, A
Das, SK
Montain, S
McGraw, S
Lutz, L
Sepowitz, J
Niro, P
Young, A
Roberts, S
AF Bukhari, Asma
Das, Sai Krupa
Montain, Scott
McGraw, Susan
Lutz, Laura
Sepowitz, John
Niro, Philip
Young, Andrew
Roberts, Susan
TI Weight Control Practices in Civilian Dependents of Active Duty Military
Personnel
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Bukhari, Asma; Montain, Scott; McGraw, Susan; Lutz, Laura; Sepowitz, John; Niro, Philip; Young, Andrew; Roberts, Susan] US Army Res Inst Environm Med, MND, Natick, MA USA.
[Das, Sai Krupa] Tufts Univ, USDA, Energy Metab Lab, JM,HNRCA, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 595.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505061
ER
PT J
AU Carey, A
Gildawie, K
Gilman, C
Rovnak, A
Shukitt-Hale, B
AF Carey, Amanda
Gildawie, Kelsea
Gilman, Casey
Rovnak, Abigail
Shukitt-Hale, Barbara
TI Blueberry Supplementation Attenuates Inflammation and Oxidative Stress
and Increases Brain-Derived Neurotrophic Factor in the Brains of
Middle-Aged Mice Consuming a High Fat Diet
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Carey, Amanda; Gildawie, Kelsea; Gilman, Casey; Rovnak, Abigail] Simmons Coll, Psychol, Boston, MA 02115 USA.
[Shukitt-Hale, Barbara] Tufts Univ, USDA, Human Nutr Res Ctr Aging, Neurosci & Aging Lab, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 3
U2 3
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA LB270
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470500268
ER
PT J
AU Chen, CY
Smith, D
Lucio, L
Braz, M
Blumberg, J
AF Chen, C-Y
Smith, Donald
Lucio, Lorena
Braz, Mariana
Blumberg, Jeffrey
TI Effect of Whole Wheat on the Development of Metabolic Syndrome in Rats
Fed Snack Foods
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Chen, C-Y; Smith, Donald; Blumberg, Jeffrey] Tufts Univ, USDA, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Lucio, Lorena; Braz, Mariana] Sao Paulo State Univ, UNESP, Botucatu Med Sch, Dept Anesthesiol, Sao Paulo, Brazil.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 402.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470503059
ER
PT J
AU Corella, D
Ordovas, J
Sorli, J
Asensio, E
Ortega, C
Carrasco, P
Portoles, O
Coltell, O
AF Corella, Dolores
Ordovas, Jose
Sorli, Jose
Asensio, Eva
Ortega, Carolina
Carrasco, Paula
Portoles, Olga
Coltell, Oscar
TI Effect of the Mediterranean Diet on DNA Methylation of Selected Genes in
the PREDIMED-Valencia Intervention Trial
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Corella, Dolores; Sorli, Jose; Asensio, Eva; Ortega, Carolina; Carrasco, Paula; Portoles, Olga] Valencia Univ CIBER OBN, Dept Prevent Med, Valencia, Spain.
[Ordovas, Jose] Tufts Univ, USDA, Human Nutr Res Ctr, Nutr & Genom Lab, Boston, MA 02111 USA.
[Coltell, Oscar] Univ Jaume 1, CIBERobn, Dept Comp Languages & Syst, Castellon de La Plana, Spain.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA LB242
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470500240
ER
PT J
AU Das, SK
Roberts, S
Saltzman, E
Yopchick, J
Power, S
Sen, S
Lowery, N
Norwitz, E
Urban, L
AF Das, Sai Krupa
Roberts, Susan
Saltzman, Edward
Yopchick, Jennelle
Power, Stephanie
Sen, Sarbattama
Lowery, Nina
Norwitz, Errol
Urban, Lorien
TI Effect of a Behavioral Intervention with Cereal Fiber or Resistant
Starch on Gestational Weight Gain: A Randomized Clinical Trial
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Das, Sai Krupa; Roberts, Susan; Saltzman, Edward; Yopchick, Jennelle; Power, Stephanie; Sen, Sarbattama; Lowery, Nina; Urban, Lorien] Tufts Univ, Energy Metab Lab, JM USDA HNRCA, Boston, MA 02111 USA.
[Norwitz, Errol] Tufts Med Ctr, Dept Obstet & Gynecol, Boston, MA USA.
NR 0
TC 0
Z9 0
U1 2
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 117.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501374
ER
PT J
AU De Leon, A
Giovanni, M
Horn, W
Burnett, D
Keim, N
AF De Leon, Angela
Giovanni, Maria
Horn, William
Burnett, Dustin
Keim, Nancy
TI Does Mere Exposure Mediate Sensitivity to Bitter Taste on Consumer
Liking and Acceptability of Whole Grain Foods?
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [De Leon, Angela; Burnett, Dustin; Keim, Nancy] Univ Calif Davis, Nutr, Davis, CA 95616 USA.
[Giovanni, Maria] Calif State Univ Chico, Food Sci & Management, Chico, CA 95929 USA.
[Horn, William; Keim, Nancy] USDA ARS, Obes & Metab Res Unit, Western Human Nutr Res Ctr, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 124.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501432
ER
PT J
AU Dyer, J
Yurchenko, O
Park, S
Gidda, S
Cai, YQ
Shockey, J
Goodman, J
Chapman, K
Mullen, R
AF Dyer, John
Yurchenko, Olga
Park, Sunjung
Gidda, Satinder
Cai, Yingqi
Shockey, Jay
Goodman, Joel
Chapman, Kent
Mullen, Robert
TI Production of Oil in Plant Vegetative Tissues
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Dyer, John; Yurchenko, Olga; Park, Sunjung] ARS, USDA, US Arid Land Agr Res Ctr, Maricopa, AZ USA.
[Park, Sunjung; Cai, Yingqi; Chapman, Kent] Univ N Texas, Dept Biol Sci, Denton, TX 76203 USA.
[Gidda, Satinder; Mullen, Robert] Univ Guelph, Dept Mol & Cellular Biol, Guelph, ON N1G 2W1, Canada.
[Shockey, Jay] ARS, USDA, Southern Reg Res Ctr, New Orleans, LA USA.
[Goodman, Joel] UT Southwestern Med Ctr Dallas, Dept Pharmacol, Dallas, TX USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 485.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470503138
ER
PT J
AU Faherty, M
Dupiton, K
Flanagan, W
Saltzman, E
AF Faherty, Meghan
Dupiton, Kimberly
Flanagan, William
Saltzman, Edward
TI Comparability of nutrition study volunteers to participants of the
Behavioral Risk Factor Surveillance System
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Faherty, Meghan; Dupiton, Kimberly; Flanagan, William; Saltzman, Edward] Tufts Univ, HNRCA, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 273.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502276
ER
PT J
AU Garcia, RG
Claycombe, K
Roemmich, J
AF Garcia, Rolando Garcia
Claycombe, Kate
Roemmich, James
TI Endocrine Modulators of Mouse Subcutaneous Adipose Tissue Beige
Adipocyte Markers
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Garcia, Rolando Garcia; Claycombe, Kate; Roemmich, James] ARS, USDA, Grand Forks Human Nutr Res Ctr, Grand Forks, ND USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 595.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505065
ER
PT J
AU Gusev, P
Andrews, K
Palachuvattil, J
Dang, P
Savarala, S
Han, F
Pehrsson, P
Douglass, L
Dwyer, J
Betz, J
Saldanha, L
Costello, R
Bailey, R
AF Gusev, P.
Andrews, K.
Palachuvattil, J.
Dang, P.
Savarala, S.
Han, F.
Pehrsson, P.
Douglass, L.
Dwyer, J.
Betz, J.
Saldanha, L.
Costello, R.
Bailey, R.
TI Analytical Content of Multivitamin/Mineral (MVM) Products Manufactured
for Different Consumer Categories
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Gusev, P.; Andrews, K.; Palachuvattil, J.; Dang, P.; Savarala, S.; Han, F.; Pehrsson, P.] ARS, Nutrient Data Lab BHNRC, USDA, Beltsville, MD USA.
[Douglass, L.] Statistician Consultant, Longmont, CO USA.
[Dwyer, J.; Betz, J.; Saldanha, L.; Costello, R.; Bailey, R.] NIH, Off Dietary Supplements, DHHS, Bethesda, MD 20892 USA.
RI Han, Fei/O-1980-2015
OI Han, Fei/0000-0003-2454-4187
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 586.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470504458
ER
PT J
AU Harshman, S
Smith, D
Centi, A
Karl, J
Shen, XH
Shea, M
Fu, XY
Booth, S
AF Harshman, Stephanie
Smith, Donald
Centi, Amanda
Karl, J.
Shen, Xiaohua
Shea, M.
Fu, Xueyan
Booth, Sarah
TI Tissue-Specific Proportions of Phylloquinone to Menaquinone-4
Concentrations Differ in Response to Dietary Phylloquinone Manipulation
in Lean Male Zucker Rats
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Harshman, Stephanie; Smith, Donald; Centi, Amanda; Karl, J.; Shen, Xiaohua; Shea, M.; Fu, Xueyan; Booth, Sarah] Tufts Univ, JM USDA HNRCA, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 263.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502229
ER
PT J
AU Hoffmann, A
Colby, S
Jahns, L
AF Hoffmann, A.
Colby, S.
Jahns, L.
TI Changes in Front-of-Pack Food Labeling from 2007-2014
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Hoffmann, A.; Colby, S.] Univ Tennessee, Nutr, Knoxville, TN USA.
[Jahns, L.] ARS, Grand Forks Human Nutr Res Ctr, USDA, New York, NY USA.
NR 0
TC 0
Z9 0
U1 2
U2 6
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 382.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502463
ER
PT J
AU Hoy, K
Goldman, J
Moshfegh, A
AF Hoy, Katherine
Goldman, Joseph
Moshfegh, Alanna
TI Two Methods to Estimate Fruit and Vegetable Intake of Adults, What We
Eat in America, NHANES 2009-2010
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Hoy, Katherine; Goldman, Joseph; Moshfegh, Alanna] ARS, USDA, Beltsville, MD USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 587.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470504467
ER
PT J
AU Hu, KQ
Mein, J
Wang, XD
AF Hu, Kang-Quan
Mein, Jonathan
Wang, Xiang-Dong
TI beta-Cryptoxanthin and Its Cleavage Metabolite, 3-OH-beta-Apo-10
'-Carotenal, can Inhibit LPS-induced Inflammatory Responses in Human
Bronchial Epithelial Cells
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Hu, Kang-Quan; Mein, Jonathan; Wang, Xiang-Dong] Tufts Univ, Nutr & Canc Biol Lab JM, USDA, HNRCA, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 603.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505178
ER
PT J
AU Huang, HQ
Xie, ZH
Yokoyama, W
Yu, LL
Wang, T
AF Huang, Haiqiu
Xie, Zhuohong
Yokoyama, Wallace
Yu, Liangli
Wang, Thomas
TI Molecular Analysis of Cholestyramine Treatment in Hamster Model
Identified CYP51 as Cholestyramine-Responsive Gene
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Huang, Haiqiu; Xie, Zhuohong; Yu, Liangli] Univ Maryland, Dept Nutr & Food Sci, College Pk, MD 20742 USA.
[Yokoyama, Wallace] USDA ARS, Processed Foods Res, Albany, CA USA.
[Wang, Thomas] USDA ARS, Diet Genom & Immunol Lab, Beltsville, MD USA.
NR 0
TC 0
Z9 0
U1 1
U2 3
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 607.13
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505236
ER
PT J
AU Huang, LP
Kirschke, C
AF Huang, Liping
Kirschke, Catherine
TI Expression and Cellular Distribution of SLC30A Zinc Transporter Family
Members in Human Normal and Diabetic Pancreases and in Human
Insulin-secreting b-cells
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Huang, Liping; Kirschke, Catherine] ARS, Obes & Metab Res Unit, USDA, Western Human Nutr Res Ctr, Davis, CA USA.
[Huang, Liping] Univ Calif Davis, Nutr, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 595.24
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505083
ER
PT J
AU Jarvis, A
Clemens, J
Rhodes, D
Moshfegh, A
AF Jarvis, Ashley
Clemens, John
Rhodes, Donna
Moshfegh, Alanna
TI Food, Beverage, and Nutrient Intakes of US Children Age 1-2 Years
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Jarvis, Ashley; Clemens, John; Rhodes, Donna; Moshfegh, Alanna] USDA, FSRG, Beltsville, MD 20705 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 404.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470503078
ER
PT J
AU Johnson, E
Vishwanathan, R
Mohn, E
Haddock, J
Rasmussen, H
Scott, T
AF Johnson, Elizabeth
Vishwanathan, Rohini
Mohn, Emily
Haddock, Jordan
Rasmussen, Helen
Scott, Tammy
TI Avocado Consumption Increases Neural Lutein and Improves Cognitive
Function
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Johnson, Elizabeth; Vishwanathan, Rohini; Mohn, Emily; Haddock, Jordan; Rasmussen, Helen; Scott, Tammy] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 1
U2 3
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 32.8
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501237
ER
PT J
AU Johnson, J
Sapkota, A
Lay, D
AF Johnson, Jay
Sapkota, Avi
Lay, Donald, Jr.
TI Comparing the effects of rapid and gradual cooling following acute
hyperthermia on body temperature and inflammatory response
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Johnson, Jay; Sapkota, Avi; Lay, Donald, Jr.] Purdue Univ, USDA ARS, Livestock Behav Res Unit, W Lafayette, IN 47907 USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA LB661
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501082
ER
PT J
AU Kahlon, T
Chiu, MC
AF Kahlon, Talwinder
Chiu, Mei-chen
TI Whole Grain Gluten-free Vegetable Spicy Snacks
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Kahlon, Talwinder; Chiu, Mei-chen] ARS, Hlth Proc Foods Res Unit, Western Reg Res Ctr, USDA, Albany, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 591.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505025
ER
PT J
AU Kahlon, T
Chiu, MC
AF Kahlon, Talwinder
Chiu, Mei-chen
TI Ancient Whole Grain Gluten-Free Egg-Free Teff, Buckwheat, Quinoa and
Amaranth Pasta
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Kahlon, Talwinder; Chiu, Mei-chen] ARS, Hlth Proc Foods Res Unit, Western Reg Res Ctr, USDA, Albany, CA USA.
NR 0
TC 0
Z9 0
U1 4
U2 11
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 591.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505024
ER
PT J
AU Karl, JP
Fu, XY
Wang, XX
Zhao, YF
Shen, J
Zhang, CH
Saltzman, E
Zhao, LP
Booth, S
AF Karl, J. Philip
Fu, Xueyan
Wang, Xiaoxin
Zhao, Yufeng
Shen, Jian
Zhang, Chenhong
Saltzman, Edward
Zhao, Liping
Booth, Sarah
TI Changes in Fecal Vitamin K Content are Associated with the Gut
Microbiota
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Karl, J. Philip; Fu, Xueyan; Saltzman, Edward; Booth, Sarah] Tufts Univ, Jean Mayer USDA HNRCA, Boston, MA 02111 USA.
[Wang, Xiaoxin; Zhao, Yufeng; Shen, Jian; Zhang, Chenhong; Zhao, Liping] Shanghai Jiao Tong Univ, State Key Lab Microbial Metab, Shanghai 200030, Peoples R China.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 262.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502221
ER
PT J
AU Karlsen, M
Troy, L
Rogers, G
Dwyer, J
McKeown, N
Jacques, P
AF Karlsen, Micaela
Troy, Lisa
Rogers, Gail
Dwyer, Johanna
McKeown, Nicola
Jacques, Paul
TI Protein sources, nutrient adequacy and diet quality
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Karlsen, Micaela; Troy, Lisa; Rogers, Gail; Dwyer, Johanna; McKeown, Nicola; Jacques, Paul] USDA, HNRCA, Washington, DC USA.
[Karlsen, Micaela; Troy, Lisa; Dwyer, Johanna; McKeown, Nicola; Jacques, Paul] Tufts Univ, Friedman Sch Nutr, Medford, MA USA.
[Troy, Lisa] UMass, Amherst, MA USA.
[Dwyer, Johanna] Tufts Med Ctr, Frances Stern Nutr Ctr, Boston, MA USA.
[Dwyer, Johanna] NIH, ODS, Bethesda, MD USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 599.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505149
ER
PT J
AU Kieffer, D
Piccolo, B
Liu, S
Lau, W
Khazaeli, M
Nazertehrani, S
Vaziri, N
Martin, R
Adams, S
AF Kieffer, D.
Piccolo, B.
Liu, S.
Lau, W.
Khazaeli, M.
Nazertehrani, S.
Vaziri, N.
Martin, R.
Adams, S.
TI Resistant Starch Alters Gut Microbiota and Reduces Uremic Retention
Solutes in Rats with Adenine-induced Chronic Kidney Disease
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Kieffer, D.; Martin, R.; Adams, S.] USDA, Obes & Metab, Res Unit, Western Human Nutr Res Ctr, Davis, CA USA.
[Kieffer, D.; Piccolo, B.; Adams, S.] Univ Calif Davis, Dept Nutr, Davis, CA 95616 USA.
[Liu, S.; Lau, W.; Khazaeli, M.; Nazertehrani, S.; Vaziri, N.] Univ Calif Irvine, Div Nephrol, Irvine, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 274.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502287
ER
PT J
AU Kieffer, D
Martin, R
Marco, M
Kim, E
Keenan, M
Knudsen, K
Dunn, T
Adams, S
Piccolo, B
AF Kieffer, D.
Martin, R.
Marco, M.
Kim, E.
Keenan, M.
Knudsen, K.
Dunn, T.
Adams, S.
Piccolo, B.
TI Enzyme-treated Wheat Bran Alters Gut Microbiota and Liver Metabolome in
Mice Fed a High Fat Diet
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Kieffer, D.; Martin, R.; Adams, S.; Piccolo, B.] USDA ARS, Obes & Metab Res Unit, Western Human Nutr Res Ctr, Davis, CA USA.
[Kieffer, D.; Dunn, T.; Adams, S.] Univ Calif Davis, Nutr Dept, Davis, CA 95616 USA.
[Marco, M.; Kim, E.] Univ Calif Davis, Food Sci & Tech Dept, Davis, CA 95616 USA.
[Keenan, M.] LSU, AgCtr, Baton Rouge, LA USA.
[Knudsen, K.] Aarhus Univ, Anim Sci, Aarhus, Denmark.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 258.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502195
ER
PT J
AU Kim, H
Arvik, T
Chon, JW
Nah, SY
Seo, KH
Bartley, G
Yokoyama, W
AF Kim, Hyunsook
Arvik, Torey
Chon, Jung-Whan
Nah, Seung-Yeol
Seo, Kun-Ho
Bartley, Glenn
Yokoyama, Wallace
TI Lower Weight Gain and Plasma and Liver Lipids in DIO Mice Fed Whole
Grape Seed Flour Are Associated with Decreased Adipose Inflammatory
Pathway Gene Expression
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Kim, Hyunsook] Konkuk Univ, Coll Vet Med, Dept Physiol, Seoul, South Korea.
[Bartley, Glenn; Yokoyama, Wallace] ARS, USDA, Albany, CA USA.
[Chon, Jung-Whan; Nah, Seung-Yeol; Seo, Kun-Ho] Konkuk Univ, Coll Vet Med, KU Ctr Food Food Safety, Seoul, South Korea.
[Arvik, Torey] Appl & Res Sci Sonomaceut LLC, Santa Rosa, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 608.28
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505273
ER
PT J
AU Kim, Y
Wang, T
AF Kim, Young
Wang, Thomas
TI The Suppressive Effects of Indole-3-carbinol (I3C)/3,3 '
Diindolylmethane (DIM) on LPS-induced IL1 Release May Be Associated with
Changes in CD84 in THP-1 Monocytes
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Kim, Young] NCI, NSRG, Rockville, MD USA.
[Wang, Thomas] USDA, Genom & Immunol Lab, Beltsville, MD 20705 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 593.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505037
ER
PT J
AU Kimble, L
Mathison, B
McKay, D
Chen, CYO
Walsh, J
Blumberg, J
Kaspar, K
Khoo, C
Chew, B
AF Kimble, Lindsey
Mathison, Bridget
McKay, Diane
Chen, C. Y. Oliver
Walsh, Jason
Blumberg, Jeffrey
Kaspar, Kerrie
Khoo, Christina
Chew, Boon
TI Chronic Consumption of High Polyphenol Content Cranberry Beverage
Improves Phenolic Acid and Flavonoid Bioavailability in Healthy
Overweight Humans
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Kimble, Lindsey; Mathison, Bridget; Chew, Boon] Washington State Univ, Sch Food Sci, Pullman, WA 99164 USA.
[McKay, Diane; Chen, C. Y. Oliver; Walsh, Jason; Blumberg, Jeffrey] Tufts Univ, USDA, Human Nutr Res Ctr, JM, Boston, MA 02111 USA.
[Kaspar, Kerrie; Khoo, Christina] R&D Ocean Spray Cranberries Inc, Middleboro, MA USA.
NR 0
TC 0
Z9 0
U1 2
U2 4
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 606.11
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505214
ER
PT J
AU Lieblein-Boff, J
Johnson, E
Kennedy, A
Lai, CS
Kuchan, M
AF Lieblein-Boff, Jacqueline
Johnson, Elizabeth
Kennedy, Adam
Lai, Chron-Si
Kuchan, Matthew
TI Lutein Accretion Corresponds to Activity of Metabolic Pathways during
Brain Development
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Lieblein-Boff, Jacqueline; Lai, Chron-Si; Kuchan, Matthew] Abbott Nutr, Res & Dev, Columbus, OH USA.
[Johnson, Elizabeth] Tufts Univ, Antioxidants Res Lab, Jean Mayer USDA, HNRCA, Boston, MA 02111 USA.
[Kennedy, Adam] Metabolon Inc, Project Management, Durham, NC USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 603.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505183
ER
PT J
AU Manjarin, R
Columbus, D
Suryawan, A
Hernandez-Garcia, A
Nguyen, H
Fiorotto, M
Hoang, NM
Davis, T
AF Manjarin, Rodrigo
Columbus, Daniel
Suryawan, Agus
Hernandez-Garcia, Adriana
Nguyen, Hanh
Fiorotto, Marta
Hoang, Nguyet-Minh
Davis, Teresa
TI Leucine Supplementation of a Protein and Energy Restricted Diet Enhances
mTORC1 Activation but not Protein Synthesis in Muscle of Neonatal Pigs
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Manjarin, Rodrigo; Columbus, Daniel; Suryawan, Agus; Hernandez-Garcia, Adriana; Nguyen, Hanh; Fiorotto, Marta; Hoang, Nguyet-Minh; Davis, Teresa] Baylor Coll Med, Pediat, USDA, ARS,Childrens Nutr Res Ctr, Houston, TX 77030 USA.
NR 0
TC 0
Z9 0
U1 2
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 123.8
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501428
ER
PT J
AU Marini, J
Didelija, I
AF Marini, Juan
Didelija, Inka
TI Dietary Arginine Requirements are Dependent on the Rate of Citrulline
Production in Mice
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Marini, Juan; Didelija, Inka] Baylor Coll Med, Crit Care Med, Houston, TX 77030 USA.
[Marini, Juan; Didelija, Inka] Baylor Coll Med, USDA ARS Childrens Nutr Res Ctr, Houston, TX 77030 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 129.8
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501444
ER
PT J
AU Miyazawa, T
Nakagawa, K
Harigae, T
Onuma, R
Kimura, F
Fujii, T
Miyazawa, T
AF Miyazawa, Taiki
Nakagawa, Kiyotaka
Harigae, Takahiro
Onuma, Ryo
Kimura, Fumiko
Fujii, Tomoyuki
Miyazawa, Teruo
TI Polysorbate-80 coated beta-carotene (encapsulated polymeric)
nanoparticles accumulate in rat lungs after intravenous injection
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Miyazawa, Taiki; Nakagawa, Kiyotaka] Tufts Univ, Vasc Biol Lab, Jean Mayer USDA, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Miyazawa, Taiki; Nakagawa, Kiyotaka; Harigae, Takahiro; Onuma, Ryo; Kimura, Fumiko; Miyazawa, Teruo] Tohoku Univ, Grad Sch Agr Sci, Food & Biodynam Chem Lab, Sendai, Miyagi 980, Japan.
[Fujii, Tomoyuki] Tohoku Univ, Grad Sch Agr Sci, Terahertz Opt & Food Engn Lab, Sendai, Miyagi 980, Japan.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 604.8
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505193
ER
PT J
AU Mohanty, I
Yuan, JL
Noratto, G
Balemba, O
Morris, C
AF Mohanty, Indira
Yuan, Jialing
Noratto, Giuliana
Balemba, Onesmo
Morris, Craig
TI Whole Wheat-supplemented Diet Prevents Risk Biomarkers of Cardiovascular
Diseases in Obese Diabetic Mice
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Mohanty, Indira; Yuan, Jialing; Noratto, Giuliana] Washington State Univ, Food Sci, Pullman, WA 99164 USA.
[Balemba, Onesmo] Univ Idaho, Biol Sci, Moscow, ID 83843 USA.
[Morris, Craig] USDA, Wheat Qual Lab, Manhattan, KS USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 254.3
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502184
ER
PT J
AU Mohn, E
Matthan, N
Neuringer, M
Crivello, N
Erdman, J
Kuchan, M
Johnson, E
AF Mohn, Emily
Matthan, Nirupa
Neuringer, Martha
Crivello, Natalia
Erdman, John
Kuchan, Matthew
Johnson, Elizabeth
TI Distribution of Lutein in Membranes of Rhesus Macaque Brain
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Mohn, Emily; Matthan, Nirupa; Crivello, Natalia; Johnson, Elizabeth] Tufts Univ, JM USDA, HNRCA, Boston, MA 02111 USA.
[Neuringer, Martha] Oregon Hlth & Sci Univ, Div Neurosci, Portland, OR 97201 USA.
[Erdman, John] Univ Illinois, Dept Food Sci & Human Nutr, Urbana, IL 61801 USA.
[Kuchan, Matthew] Abbott Nutr, Columbus, OH USA.
NR 0
TC 1
Z9 1
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 603.7
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505184
ER
PT J
AU Morris, MC
Booth, S
Dawson-Hughes, B
Barnes, L
Bennett, D
Wang, YM
AF Morris, Martha Clare
Booth, Sarah
Dawson-Hughes, Bess
Barnes, Lisa
Bennett, David
Wang, Yamin
TI Relations to Cognitive Change with Age of Micronutrients Found in Green
Leafy Vegetables
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Morris, Martha Clare; Wang, Yamin] Rush Univ, Internal Med, Chicago, IL 60612 USA.
[Booth, Sarah; Dawson-Hughes, Bess] Friedman Sch Nutr Sci & Policy, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA USA.
[Barnes, Lisa; Bennett, David] Rush Univ, Rush Alzheimers Dis Ctr, Chicago, IL 60612 USA.
NR 0
TC 1
Z9 1
U1 0
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 260.3
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502207
ER
PT J
AU Nakagawa, K
Miyazawa, T
Kim, S
Thomas, M
Kimura, F
Miyazawa, T
Zingg, JM
Azzi, A
Meydani, M
AF Nakagawa, Kiyotaka
Miyazawa, Taiki
Kim, Sharon
Thomas, Michael
Kimura, Fumiko
Miyazawa, Teruo
Zingg, Jean-Marc
Azzi, Angelo
Meydani, Mohsen
TI Attenuation of Inflammatory Markers in Plasma of Obese Mice by Caloric
Restriction (CR) and Combined Curcumin (Cur) and Piperine (Pip)
Supplementation
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Nakagawa, Kiyotaka; Miyazawa, Taiki; Kim, Sharon; Thomas, Michael; Zingg, Jean-Marc; Azzi, Angelo; Meydani, Mohsen] Tufts Univ, Vasc Biol Lab, Jean Mayer USDA, Human Nutr Res Ctr, Boston, MA 02111 USA.
[Nakagawa, Kiyotaka; Miyazawa, Taiki; Kimura, Fumiko; Miyazawa, Teruo] Tohoku Univ, Grad Sch Agr Sci, Food & Biodynam Chem Lab, Sendai, Miyagi 980, Japan.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 606.3
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505206
ER
PT J
AU Novello, S
Cash, S
Roberts, S
Masters, W
AF Novello, Sarah
Cash, Sean
Roberts, Susan
Masters, William
TI Self-Weighing Increases Weight Loss in Free-Living Adults: A
Double-Blind Randomized Field Trial among 200,000 Health App Users
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Novello, Sarah; Cash, Sean; Roberts, Susan; Masters, William] Tufts Univ, Friedman Sch Nutr Sci & Policy, Boston, MA 02111 USA.
[Novello, Sarah] Lose It, Boston, MA USA.
[Roberts, Susan] Tufts Univ, JM USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 594.9
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505056
ER
PT J
AU Oaks, B
Stewart, C
Laugero, K
Adu-Afarwuah, S
Lartey, A
Baldiviez, L
Vosti, S
Ashorn, P
Dewey, K
AF Oaks, Brietta
Stewart, Christine
Laugero, Kevin
Adu-Afarwuah, Seth
Lartey, Anna
Baldiviez, Lacey
Vosti, Steve
Ashorn, Per
Dewey, Kathryn
TI Associations of Maternal Cortisol, Inflammation, Hemoglobin, Iron
Status, and BMI with Birth Outcomes in Pregnant Women in Ghana
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Oaks, Brietta; Stewart, Christine; Laugero, Kevin; Baldiviez, Lacey; Dewey, Kathryn] Univ Calif Davis, Nutr, Davis, CA 95616 USA.
[Laugero, Kevin] ARS, Obes & Metab Res Unit, Western Human Nutr Res Ctr, USDA, Davis, CA USA.
[Adu-Afarwuah, Seth; Lartey, Anna] Univ Ghana, Nutr & Food Sci, Legon, Ghana.
[Vosti, Steve] Univ Calif Davis, Agr & Resource Econ, Davis, CA 95616 USA.
[Ashorn, Per] Univ Tampere, Sch Med, Int Hlth, FIN-33101 Tampere, Finland.
NR 0
TC 1
Z9 1
U1 0
U2 3
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 579.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470504338
ER
PT J
AU Paul, L
Sawaengsri, H
Reginaldo, C
Selhub, J
AF Paul, Ligi
Sawaengsri, Hathairat
Reginaldo, Christina
Selhub, Jacob
TI Effect of a High Folic Acid Diet on Telomere Length of Colonic Mucosa in
Mice
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Paul, Ligi; Sawaengsri, Hathairat; Reginaldo, Christina; Selhub, Jacob] JM USDA HNRC, Boston, MA USA.
[Paul, Ligi; Sawaengsri, Hathairat; Reginaldo, Christina; Selhub, Jacob] Tufts Univ, Friedman Sch Nutr, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA LB340
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470500338
ER
PT J
AU Piccolo, B
Graham, J
Fiehn, O
Havel, P
Adams, S
AF Piccolo, Brian
Graham, James
Fiehn, Oliver
Havel, Peter
Adams, Sean
TI Plasma Metabolomics Reveal Longitudinal Changes in Branched-Chain Amino
Acids and other Metabolites during Diabetes Progression in the
UCD-Type-2-Diabetes Rat Model
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Piccolo, Brian] USDA, Obes & Metab Res Unit, Western Human Nutr Res Ctr, Davis, CA USA.
[Graham, James; Havel, Peter] Univ Calif Davis, Sch Vet Med, Dept Mol Biosci, Davis, CA USA.
[Graham, James; Havel, Peter; Adams, Sean] Univ Calif Davis, Dept Nutr, Davis, CA USA.
[Fiehn, Oliver] Univ Calif Davis, West Coast Metabol, Davis, CA USA.
[Adams, Sean] UAMS, Arkansasa Childrens Nutr Ctr, Little Rock, AR USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 275.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502295
ER
PT J
AU Picklo, M
Newman, J
AF Picklo, Matthew
Newman, John
TI Hepatic Oxylipin Profiles in Obese Rats: Effect of Antioxidant
Supplementation
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Picklo, Matthew] USDA ARS, GFHNRC, Grand Forks, ND USA.
[Newman, John] USDA ARS, WHNRC, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 2
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 389.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502495
ER
PT J
AU Qin, BL
Zhao, AP
Liu, C
Anderson, R
AF Qin, Bolin
Zhao, Aiping
Liu, Chao
Anderson, Richard
TI Aqueous cinnamon extract protects against oxygen-glucose
deprivation-induced damage in bEnd.3 cells
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Qin, Bolin; Zhao, Aiping] Univ Maryland, Sch Med, Dept Med, Baltimore, MD 21201 USA.
[Qin, Bolin; Anderson, Richard] USDA, Beltsville Human Nutr Res Ctr, Beltsville, MD 20705 USA.
[Qin, Bolin] Res IN Ingredients Com, Columbia, TN USA.
[Qin, Bolin; Liu, Chao] Jiangsu Prov Hosp Integrat Chinese & Western Med, Endocrine & Diabet Ctr, Nanjing, Jiangsu, Peoples R China.
NR 0
TC 0
Z9 0
U1 2
U2 3
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 607.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505225
ER
PT J
AU Raatz, S
Johnson, L
Bibus, D
AF Raatz, Susan
Johnson, LuAnn
Bibus, Douglas
TI Effect of A Single Dose of Emulsified Versus Capsular Fish Oils on
Plasma Phospholipid Fatty Acids Over 48 Hours
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Raatz, Susan; Johnson, LuAnn] ARS, USDA, Grand Forks Human Nutr Ctr, Grand Forks, ND USA.
[Raatz, Susan; Bibus, Douglas] Univ Minnesota, Minneapolis, MN USA.
[Bibus, Douglas] Lipid Technol, Austin, MN USA.
NR 0
TC 0
Z9 0
U1 1
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 598.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505122
ER
PT J
AU Raatz, S
Beals, K
Johnson, L
Picklo, M
AF Raatz, Susan
Beals, Katherine
Johnson, Luann
Picklo, Matthew
TI Glycemic Effect of Nutritive Sweeteners: Honey, Sugar and High Fructose
Corn Syrup
SO FASEB JOURNAL
LA English
DT Meeting Abstract
CT Experimental Biology Meeting 2015
CY MAR 28-APR 01, 2015
CL Boston, MA
SP Amer Assoc Anatomists, Amer Physiol Soc, Amer Soc Biochem & Mol Biol, Amer Soc Investigat Pathol, Amer Soc Nutr, Amer Soc Pharmacol & Expt Therapeut
C1 [Raatz, Susan; Johnson, Luann; Picklo, Matthew] ARS, USDA, Grand Forks Human Nutr Ctr, Grand Forks, ND USA.
[Raatz, Susan] Univ Minnesota, Spiritual & Healing, Minneapolis, MN USA.
[Beals, Katherine] Univ Utah, Nutr, Salt Lake City, UT USA.
NR 0
TC 0
Z9 0
U1 3
U2 9
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 596.3
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505092
ER
PT J
AU Rhodes, D
Clemens, J
Moshfegh, A
AF Rhodes, Donna
Clemens, John
Moshfegh, Alanna
TI Nutrient Intakes and Eating Patterns of US Adults by Race/Ethnicity
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Rhodes, Donna; Clemens, John; Moshfegh, Alanna] ARS, Beltsville Human Nutr Res Ctr, USDA, Beltsville, MD USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 272.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502272
ER
PT J
AU Roubert, A
Lyu, L
Pfalzer, A
Gauger, K
Choi, W
Schneider, S
Liu, ZH
AF Roubert, Agathe
Lyu, Lin
Pfalzer, Anna
Gauger, Kelly
Choi, Woojung
Schneider, Sallie
Liu, Zhenhua
TI Obesity-induced Inflammation in Human Mammary Tissues: a
Microenvironment Favorable for the Development of Postmenopausal Breast
Cancer
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Roubert, Agathe; Lyu, Lin; Choi, Woojung; Liu, Zhenhua] Univ Massachusetts, Sch Publ Hlth & Hlth Sci, Amherst, MA 01003 USA.
[Gauger, Kelly; Schneider, Sallie] Baystate Med Ctr, Pioneer Valley Life Sci Inst, Springfield, MA USA.
[Pfalzer, Anna; Liu, Zhenhua] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 405.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470503086
ER
PT J
AU Rowan, S
Chang, ML
Jiang, SH
Cassalman, C
McGuire, C
Baleja, J
Nagel, B
Fliesler, S
Smith, D
Taylor, A
AF Rowan, Sheldon
Chang, Min-Lee
Jiang, Shuhong
Cassalman, Christa
McGuire, Christina
Baleja, James
Nagel, Barbara
Fliesler, Steven
Smith, Donald
Taylor, Allen
TI Dietary Glycemia Reversibly Contributes to Age-related Macular
Degeneration and Metabolic Disease in Aged C57Bl/6J Mice
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Rowan, Sheldon; Chang, Min-Lee; Jiang, Shuhong; Smith, Donald; Taylor, Allen] Tufts Univ, JM, USDA, HNRCA, Boston, MA 02111 USA.
[Cassalman, Christa] Tufts Univ, Sch Med, Dept Pathol & Lab Med, Boston, MA 02111 USA.
[McGuire, Christina; Baleja, James] Tufts Univ, Sch Med, Dept Biochem, Boston, MA 02111 USA.
[Nagel, Barbara] St Louis Univ, Dept Pathol, St Louis, MO 63103 USA.
[Fliesler, Steven] SUNY Buffalo, Dept Ophth, Buffalo, NY 14260 USA.
[Fliesler, Steven] SUNY Buffalo, Dept Biochem, Buffalo, NY 14214 USA.
[Fliesler, Steven] SUNY Eye Inst, Buffalo, NY USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 136.4
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501496
ER
PT J
AU Rozati, M
Barnett, J
Wu, DY
Handelman, G
Dallal, G
Saltzman, E
Wilson, T
Li, LJ
Wang, JP
Marcos, A
Ordovas, J
Lee, YC
Meydani, M
Meydani, S
AF Rozati, Mitra
Barnett, Junaidah
Wu, Dayong
Handelman, Garry
Dallal, Gerard
Saltzman, Edward
Wilson, Thomas
Li, Lijun
Wang, Junpeng
Marcos, Ascension
Ordovas, Jose
Lee, Yu-Chi
Meydani, Mohsen
Meydani, Simin
TI Cardiometabolic and Immunological Impacts of Extra Virgin Olive Oil
Consumption in Overweight and Obese Older Adults: A Randomized
Controlled Trial
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Rozati, Mitra; Barnett, Junaidah; Wu, Dayong; Dallal, Gerard; Saltzman, Edward; Li, Lijun; Wang, Junpeng; Ordovas, Jose; Lee, Yu-Chi; Meydani, Mohsen; Meydani, Simin] Tufts Univ, USDA, Human Nutr Res Ctr Aging, JM, Boston, MA 02111 USA.
[Rozati, Mitra; Handelman, Garry; Wilson, Thomas] Univ Massachusetts, Clin Lab & Nutr Sci, Lowell, MA USA.
[Marcos, Ascension] Inst Food Sci Technol & Nutr, Nutr & Metab, Madrid, Spain.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 252.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502172
ER
PT J
AU Saldanha, L
Dwyer, J
Andrews, K
Bailen, R
Bailey, R
Betz, J
Costello, R
Dang, P
Gahche, J
Gusev, P
Han, F
Palachuvattil, J
Savarala, S
Pehrsson, P
AF Saldanha, L.
Dwyer, J.
Andrews, K.
Bailen, R.
Bailey, R.
Betz, J.
Costello, R.
Dang, P.
Gahche, J.
Gusev, P.
Han, F.
Palachuvattil, J.
Savarala, S.
Pehrsson, P.
TI Comparison of Labeled Composition and Strength of Prenatal
Multivitamin/Mineral (MVM) Prescription (P) and Non-Prescription (N-P)
Supplements
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Andrews, K.; Dang, P.; Gusev, P.; Han, F.; Palachuvattil, J.; Savarala, S.; Pehrsson, P.] ARS, USDA, Washington, DC USA.
[Gahche, J.] CDC, NCHS, Atlanta, GA 30333 USA.
RI Han, Fei/O-1980-2015
OI Han, Fei/0000-0003-2454-4187
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 250.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502156
ER
PT J
AU Sang, SM
Fu, JS
Zhu, YD
Yerke, A
Wise, M
Johnson, J
Chu, YF
AF Sang, Shengmin
Fu, Junsheng
Zhu, Yingdong
Yerke, Aaron
Wise, Mitchell
Johnson, Jodee
Chu, YiFang
TI Oat Avenanthramides Induce Heme Oxygengase-1 Expression via
Nrf2-mediated Signaling in HK-2 Cells
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Sang, Shengmin; Fu, Junsheng; Zhu, Yingdong; Yerke, Aaron] North Carolina Agr & Tech State Univ, Ctr Excellence Postharvest Technol, Kannapolis, NC USA.
[Wise, Mitchell] USDA, Cereal Crops Res Unit, Madison, WI USA.
[Johnson, Jodee; Chu, YiFang] PepsiCo R&D Nutr, Quaker Oats Ctr Excellence, Barrington, IL USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 390.1
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470503003
ER
PT J
AU Sawaengsri, H
Qiu, WQ
Scott, T
Rosenberg, I
Jaques, P
Selhub, J
Paul, L
AF Sawaengsri, Hathairat
Qiu, Wei Qiao
Scott, Tammy
Rosenberg, Irwin
Jaques, Paul
Selhub, Jacob
Paul, Ligi
TI Association between Transcobalamin II C776G Polymorphism and Neuropathy
is Modified by Folate Intake in Vitamin B-12 Sufficient Elders
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Sawaengsri, Hathairat; Scott, Tammy; Rosenberg, Irwin; Jaques, Paul; Selhub, Jacob; Paul, Ligi] Tufts Univ, Friedman Sch Nutr, Boston, MA 02111 USA.
[Sawaengsri, Hathairat; Scott, Tammy; Rosenberg, Irwin; Jaques, Paul; Selhub, Jacob; Paul, Ligi] Tufts Univ, JM, USDA, HNRCA, Boston, MA 02111 USA.
[Qiu, Wei Qiao] Boston Univ, Dept Psychiat, Boston, MA 02215 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 134.7
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501483
ER
PT J
AU Schlossman, N
Saltzman, E
Shea, MK
Balan, E
Fuss, P
Batra, P
Pruzensky, W
Griffith, J
Coglianese, N
Wood, L
Santoso, M
Roberts, S
AF Schlossman, Nina
Saltzman, Edward
Shea, M. Kyla
Balan, Ela
Fuss, Paul
Batra, Payal
Pruzensky, William
Griffith, John
Coglianese, Nicole
Wood, Lauren
Santoso, Marianne
Roberts, Susan
TI Nutritional Status of Children in Primary Schools in the Oio and Cacheu
Regions in Guinea-Bissau
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Schlossman, Nina; Coglianese, Nicole; Wood, Lauren; Santoso, Marianne] Res Global Food & Nutr Inc, Washington, DC USA.
[Saltzman, Edward; Shea, M. Kyla; Fuss, Paul; Batra, Payal; Griffith, John; Roberts, Susan] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Balan, Ela; Pruzensky, William] Int Partnership Human Dev, Res, Leesburg, VA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 579.18
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470504355
ER
PT J
AU Shahab-Ferdows, S
Hampel, D
Islam, M
Allen, L
AF Shahab-Ferdows, Setareh
Hampel, Daniela
Islam, Munirul
Allen, Lindsay
TI Effects and kinetics of maternal supplementation on vitamin
concentrations in human milk
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Shahab-Ferdows, Setareh; Hampel, Daniela; Allen, Lindsay] ARS, WHNRC, USDA, Davis, CA USA.
[Hampel, Daniela; Allen, Lindsay] Univ Calif Davis, Nutr, Davis, CA USA.
[Islam, Munirul] Dhaka Hosp, ICDDR, B Dahka, Bangladesh.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 133.5
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501473
ER
PT J
AU Solano-Aguilar, G
Molokin, A
Botelho, C
Fiorino, AM
Vinyard, B
Urban, J
Haverkamp, M
Hibberd, P
AF Solano-Aguilar, Gloria
Molokin, Aleksey
Botelho, Christine
Fiorino, Anne-Maria
Vinyard, Bryan
Urban, Joseph
Haverkamp, Miriam
Hibberd, Patricia
TI Lactobacillus rhamnosus GG ATCC 53103 (LGG) as an Immune Adjuvant for
Influenza Vaccination in the Elderly
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Solano-Aguilar, Gloria; Molokin, Aleksey; Urban, Joseph] ARS, Beltsville Human Nutr Res Ctr, USDA, Beltsville, MD USA.
[Botelho, Christine; Fiorino, Anne-Maria; Haverkamp, Miriam; Hibberd, Patricia] Massachusetts Gen Hosp, Dept Pediat, Div Global Hlth, Boston, MA 02114 USA.
[Vinyard, Bryan] ARS, Biometr Consulting Serv, USDA, Belstville, MD USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 593.13
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505045
ER
PT J
AU Suryawan, A
Boutry, C
El-Kadi, S
Steinhoff-Wagner, J
Nguyen, H
Parada, R
Stoll, B
Orellana, R
Davis, T
AF Suryawan, Agus
Boutry, Claire
El-Kadi, Samer
Steinhoff-Wagner, Julia
Nguyen, Hanh
Parada, Rosemarie
Stoll, Barbara
Orellana, Renan
Davis, Teresa
TI Leucine Pulses during Long-term Continuous Feeding Enhance mTORC1 and
mTORC2 Activation in Skeletal Muscle of Neonatal Pigs
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Suryawan, Agus; Boutry, Claire; El-Kadi, Samer; Steinhoff-Wagner, Julia; Nguyen, Hanh; Parada, Rosemarie; Stoll, Barbara; Orellana, Renan; Davis, Teresa] Baylor Coll Med, Dept Pediat, USDA, ARS,Childrens Nutr Res Ctr, Houston, TX 77030 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 123.6
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470501426
ER
PT J
AU Vomhof-DeKrey, E
Roemmich, J
Claycombe, K
AF Vomhof-DeKrey, Emilie
Roemmich, James
Claycombe, Kate
TI Maternal low protein diet leads to dysregulation of placental iNKT cells
and M1/M2 macrophage ratio, body weight loss in male, neonate
Sprague-Dawley rats and increased UCP-1 mediated thermogenesis
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Vomhof-DeKrey, Emilie; Roemmich, James; Claycombe, Kate] USDA ARS, Human Nutr Res Ctr, Washington, DC 20250 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA LB257
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470500255
ER
PT J
AU Voruganti, VS
Chittoor, G
Laston, S
Haack, K
Cole, S
Comuzzie, A
Butte, N
AF Voruganti, V. Saroja
Chittoor, Geetha
Laston, Sandra
Haack, Karin
Cole, Shelley
Comuzzie, Anthony
Butte, Nancy
TI Pleiotropic Effects Of GCKR And ABCG2 On Serum Levels Of Uric Acid And
Triglycerides In Hispanic Children
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Voruganti, V. Saroja; Chittoor, Geetha] UNC, Nutr & Nutr Res Inst, Chapel Hill, NC USA.
[Laston, Sandra; Haack, Karin; Cole, Shelley; Comuzzie, Anthony] Texas Biomed Res Inst, Genet, San Antonio, TX USA.
[Butte, Nancy] Baylor Coll Med, Pediat, Houston, TX 77030 USA.
[Butte, Nancy] USDA ARS, Childrens Nutr Res Ctr, Washington, DC 20250 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 258.8
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502197
ER
PT J
AU Wang, JP
Niu, XL
Meydani, SM
Wu, DY
AF Wang, Junpeng
Niu, Xinli
Meydani, Simin
Wu, Dayong
TI Epigallocatechin-3-gallate (EGCG) Inhibits Murine CD4+T cell Division
and Cell Cycle Progression through Modulating Cell Cycle
Related-proteins
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Wang, Junpeng; Niu, Xinli; Meydani, Simin; Wu, Dayong] Tufts Univ, USDA, HNRCA, Nutr Immunol Lab, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 593.10
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470505042
ER
PT J
AU Wang, JP
Niu, XL
Meydani, S
Wu, DY
AF Wang, Junpeng
Niu, Xinli
Meydani, Simin
Wu, Dayong
TI Dietary Supplementation with Naringenin Attenuates Experimental
Autoimmune Encephalomyelitis in Mice
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Wang, Junpeng; Niu, Xinli; Meydani, Simin; Wu, Dayong] Tufts Univ, HNRCA, USDA, Nutr Immunol Lab, Boston, MA 02111 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 252.2
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502168
ER
PT J
AU Woodhouse, L
Adams, S
Keim, N
Van Loan, M
Zunino, S
AF Woodhouse, Leslie
Adams, S.
Keim, N.
Van Loan, M.
Zunino, S.
TI Plasma Zinc Correlations with Markers of Inflammation in Overweight and
Obese Adults; a Cross Sectional Phenotyping Study
SO FASEB JOURNAL
LA English
DT Meeting Abstract
C1 [Woodhouse, Leslie; Adams, S.; Keim, N.; Van Loan, M.; Zunino, S.] USDA ARS, WHNRC, Davis, CA USA.
NR 0
TC 0
Z9 0
U1 1
U2 2
PU FEDERATION AMER SOC EXP BIOL
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3998 USA
SN 0892-6638
EI 1530-6860
J9 FASEB J
JI Faseb J.
PD APR
PY 2015
VL 29
SU 1
MA 258.7
PG 1
WC Biochemistry & Molecular Biology; Biology; Cell Biology
SC Biochemistry & Molecular Biology; Life Sciences & Biomedicine - Other
Topics; Cell Biology
GA CR6PV
UT WOS:000361470502196
ER
PT J
AU Knepper, C
Mou, BQ
AF Knepper, Caleb
Mou, Beiquan
TI Semi-High Throughput Screening for Potential Drought-tolerance in
Lettuce (Lactuca sativa) Germplasm Collections
SO JOVE-JOURNAL OF VISUALIZED EXPERIMENTS
LA English
DT Article
DE Environmental Sciences; Issue 98; Lettuce; Lactuca sativa; drought;
water-stress; abiotic-stress; relative water content
AB This protocol describes a method by which a large collection of the leafy green vegetable lettuce (Lactuca sativa L.) germplasm was screened for likely drought-tolerance traits. Fresh water availability for agricultural use is a growing concern across the United States as well as many regions of the world. Short-term drought events along with regulatory intervention in the regulation of water availability coupled with the looming threat of long-term climate shifts that may lead to reduced precipitation in many important agricultural regions has increased the need to hasten the development of crops adapted for improved water use efficiency in order to maintain or expand production in the coming years. This protocol is not meant as a step-by-step guide to identifying at either the physiological or molecular level drought-tolerance traits in lettuce, but rather is a method developed and refined through the screening of thousands of different lettuce varieties. The nature of this screen is based in part on the streamlined measurements focusing on only three water-stress indicators: leaf relative water content, wilt, and differential plant growth following drought-stress. The purpose of rapidly screening a large germplasm collection is to narrow the candidate pool to a point in which more intensive physiological, molecular, and genetic methods can be applied to identify specific drought-tolerant traits in either the lab or field. Candidates can also be directly incorporated into breeding programs as a source of drought-tolerance traits.
C1 [Knepper, Caleb; Mou, Beiquan] USDA ARS, Washington, DC 20250 USA.
RP Mou, BQ (reprint author), USDA ARS, Washington, DC 20250 USA.
EM Beiquan.Mou@ARS.USDA.GOV
FU California Department of Food and Agriculture [CDFA SCB11019]
FX The authors would like to thank California Department of Food and
Agriculture for funding of the project which led to the development of
this protocol. CDFA SCB11019.
NR 12
TC 0
Z9 0
U1 1
U2 6
PU JOURNAL OF VISUALIZED EXPERIMENTS
PI CAMBRIDGE
PA 1 ALEWIFE CENTER, STE 200, CAMBRIDGE, MA 02140 USA
SN 1940-087X
J9 JOVE-J VIS EXP
JI J. Vis. Exp.
PD APR
PY 2015
IS 98
AR e52492
DI 10.3791/52492
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CR7MR
UT WOS:000361534800019
ER
PT J
AU McKeon, TA
He, XH
AF McKeon, Thomas A.
He, Xiaohua
TI Castor diacylglycerol acyltransferase type 1 (DGAT1) displays greater
activity with diricinolein than Arabidopsis DGAT1
SO BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY
LA English
DT Article
DE Castor; Arabidopsis thaliana; Ricinus communis; Triacylglycerol; Oil
biosynthesis; Ricinoleate
ID SEED OIL CONTENT; RICINUS-COMMUNIS; TRANSGENIC ARABIDOPSIS; FATTY-ACIDS;
CDNA; EXPRESSION; CLONING; PLANTS; TRIACYLGLYCEROL
AB Castor oil contains the hydroxy fatty acid ricinoleate as a major (90%) component. The cliacylglycerol acyltransferase (DGAT) carries out the final reaction step in the biosynthesis of triacylglycerol, the principal constituent of seed oil, and has been considered to be the step that controls the oil content of seeds. In order to better understand how castor is able to produce such an unusual oil, we have compared the substrate selectivity of the type 1 DGATs (DGAT1) from castor (RcDGAT1) and Arabidopsis thallana (AtDGAT1). This comparison of DGATs indicates that RcDGAT1 is more active than AtDGAT1 when the substrate is diricinolein, the predominant substrate for DGAT in the castor seed, while both are similarly active with dipalmitolein. The approximate twofold preference of RcDGAT in using diricinolein explains part of the sixfold preference displayed by a castor in vitro system For incorporating ricinoleate into castor oil. Published by Elsevier Ltd.
C1 [McKeon, Thomas A.; He, Xiaohua] USDA ARS WRRC, Albany, CA 94710 USA.
RP McKeon, TA (reprint author), USDA ARS WRRC, 800 Buchanan St, Albany, CA 94710 USA.
EM thomas.mckeon@ars.usda.gov
NR 18
TC 2
Z9 2
U1 1
U2 1
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1878-8181
J9 BIOCATAL AGRIC BIOTE
JI Biocatal. Agric. Biotechnol.
PD APR
PY 2015
VL 4
IS 2
BP 276
EP 278
DI 10.1016/j.bcab.2015.01.005
PG 3
WC Biotechnology & Applied Microbiology
SC Biotechnology & Applied Microbiology
GA CR1UY
UT WOS:000361111800020
ER
PT J
AU Widmer, TL
AF Widmer, T. L.
TI Differences in Virulence and Sporulation of Phytophthora kemoviae
Isolates Originating From Two Distinct Geographical Regions
SO PLANT DISEASE
LA English
DT Article
ID RAMORUM; SUSCEPTIBILITY; PATHOGEN; INFESTANS; HOST; AGGRESSIVENESS;
KERNOVIAE; POTATO; FOREST; FOLIAGE
AB Phytophthora kernoviae has only been isolated from the United Kingdom and New Zealand. To understand what differences may exist between isolates from these two distinct geographical regions, virulence studies on three host plants and sporulation on host leaves were conducted on select isolates. Three host plant species (Rhododendron ponticum, Magnolia stellata, and Annona cherimola) were inoculated individually with sporangia of six different isolates from each geographical region. Results showed an overall higher virulence on all three hosts from isolates originating from the United Kingdom. After inoculation, P. kernoviae sporangia and oospore formation on different host leaves were observed and compared with P. cactorum and P. syringae. Results were host dependent, with P. kernoviae producing generally similar or higher amounts of both propagules compared with the other U.S. indigenous species. These results have implications for regulatory agencies and scientists who are interested in preventing its entrance into the United States and learning more about its potential spread.
C1 USDA ARS, Foreign Dis Weed Sci Res Unit, Ft Detrick, MD 21702 USA.
RP Widmer, TL (reprint author), USDA ARS, Foreign Dis Weed Sci Res Unit, Ft Detrick, MD 21702 USA.
EM Tim.Widmer@ars.usda.gov
NR 51
TC 1
Z9 1
U1 2
U2 6
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
EI 1943-7692
J9 PLANT DIS
JI PLANT DIS.
PD APR
PY 2015
VL 99
IS 4
BP 460
EP 466
DI 10.1094/PDIS-09-14-0957-RE
PG 7
WC Plant Sciences
SC Plant Sciences
GA CQ8NT
UT WOS:000360865700004
ER
PT J
AU Xiang, Y
Scandiani, MM
Herman, TK
Hartman, GL
AF Xiang, Y.
Scandiani, M. M.
Herman, T. K.
Hartman, G. L.
TI Optimizing Conditions of a Cell-Free Toxic Filtrate Stem Cutting Assay
to Evaluate Soybean Genotype Responses to Fusarium Species that Cause
Sudden Death Syndrome
SO PLANT DISEASE
LA English
DT Article
ID F SP. GLYCINES; SOLANI; VIRGULIFORME; PHYTOTOXICITY; RESISTANCE; AGENT;
AGGRESSIVENESS; PURIFICATION; TUCUMANIAE; NITROGEN
AB Cell-free toxic culture filtrates from Fusarium virguliforme, the causal fungus of soybean sudden death syndrome (SDS), cause foliar symptoms on soybean stem cuttings similar to those obtained from root inoculations in whole plants and those observed in production fields. The objectives of this study were to (i) optimize the production conditions for F. virguliforme cell-free toxic culture filtrates and the incubation conditions of the stem cutting assay used to test the toxicity of the cell-free toxic culture filtrates, and (ii) use the optimized assay and a whole plant root inoculation assay to compare four SDS-causing isolates on a panel of selected soybean genotypes. Area under the disease progress curve (AUDPC) values were highest (P = 0.05) when cuttings were immersed in culture filtrate of fungus grown in soybean dextrose broth, in filtrate produced from the fungus grown for 18 or 22 days, and when stem cuttings were incubated at 30 degrees C. AUDPC values and shoot dry weights from the whole plant root inoculations and the AUDPC values from the stem cutting assay differed (P < 0.05) among nine soybean genotypes tested with F. virguliforme and F. tucumaniae isolates, and the AUDPC values from the two assays were positively correlated (r = 0.44 at P < 0.0001).
C1 [Xiang, Y.] Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
[Scandiani, M. M.] UNR, Ctr Referencia Micol, Fac Cs Biog & Farm, Rosario, Santa Fe, Argentina.
[Herman, T. K.] Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
[Hartman, G. L.] USDA ARS, Urbana, IL 61801 USA.
RP Hartman, GL (reprint author), USDA ARS, Urbana, IL 61801 USA.
EM ghartman@illinois.edu
FU North Central Soybean Research Program
FX We would like to thank the North Central Soybean Research Program for
funding support and Dr. M. Miller for the use of the anaerobic chamber.
NR 29
TC 1
Z9 1
U1 3
U2 12
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
EI 1943-7692
J9 PLANT DIS
JI PLANT DIS.
PD APR
PY 2015
VL 99
IS 4
BP 502
EP 507
DI 10.1094/PDIS-08-14-0791-RE
PG 6
WC Plant Sciences
SC Plant Sciences
GA CQ8NT
UT WOS:000360865700010
ER
PT J
AU Fountain, JC
Yang, L
Khera, P
Kemerait, RC
Lee, RD
Scully, BT
Varshney, RK
Guo, B
AF Fountain, J. C.
Yang, L.
Khera, P.
Kemerait, R. C.
Lee, R. D.
Scully, B. T.
Varshney, R. K.
Guo, B.
TI Aflatoxin production and oxidative stress in Aspergillus flavus
SO PHYTOPATHOLOGY
LA English
DT Meeting Abstract
CT Meeting of the Southern-Division of American-Phytopathological-Society
(APS)
CY FEB 01-02, 2015
CL Atlanta, GA
SP Amer Phytopathol Soc, So Div
C1 [Fountain, J. C.; Yang, L.; Kemerait, R. C.; Lee, R. D.] Univ Georgia, Tifton, GA USA.
[Khera, P.; Varshney, R. K.] Int Crops Res Inst Semi Arid Trop, Hyderabad, Andhra Pradesh, India.
[Scully, B. T.] USDA ARS, Ft Pierce, FL USA.
[Guo, B.] USDA ARS, Tifton, GA 31793 USA.
RI Varshney, Rajeev/C-5295-2014
OI Varshney, Rajeev/0000-0002-4562-9131
NR 0
TC 0
Z9 0
U1 1
U2 3
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
SU 2
PG 2
WC Plant Sciences
SC Plant Sciences
GA CP0VR
UT WOS:000359594700016
ER
PT J
AU Hu, D
Oh, DH
Dassanayake, M
Walker, D
Chen, Z
AF Hu, D.
Oh, D. H.
Dassanayake, M.
Walker, D.
Chen, Z.
TI RNA-seq analysis of soybean near-isogenic line carrying Asian soybean
rust-resistant and -susceptible alleles
SO PHYTOPATHOLOGY
LA English
DT Meeting Abstract
CT Meeting of the Southern-Division of American-Phytopathological-Society
(APS)
CY FEB 01-02, 2015
CL Atlanta, GA
SP Amer Phytopathol Soc, So Div
C1 [Hu, D.; Chen, Z.] Louisiana State Univ, Ctr Agr, Dept Plant Pathol & Crop Physiol, Baton Rouge, LA 70803 USA.
[Oh, D. H.; Dassanayake, M.] Louisiana State Univ, Dept Biol Sci, Baton Rouge, LA 70803 USA.
[Walker, D.] USDA ARS, Soybean Maize Germplasm Pathol & Genet Res Unit, Urbana, IL USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
SU 2
PG 1
WC Plant Sciences
SC Plant Sciences
GA CP0VR
UT WOS:000359594700025
ER
PT J
AU Torrance, TN
Brenneman, TB
Webster, TM
AF Torrance, T. N.
Brenneman, T. B.
Webster, T. M.
TI Fungicides for controlling sugar beet diseases in Georgia
SO PHYTOPATHOLOGY
LA English
DT Meeting Abstract
CT Meeting of the Southern-Division of American-Phytopathological-Society
(APS)
CY FEB 01-02, 2015
CL Atlanta, GA
SP Amer Phytopathol Soc, So Div
C1 [Torrance, T. N.; Brenneman, T. B.] Univ Georgia, Tifton, GA USA.
[Webster, T. M.] USDA, Tifton, GA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
SU 2
PG 1
WC Plant Sciences
SC Plant Sciences
GA CP0VR
UT WOS:000359594700057
ER
PT J
AU Wang, H
Khera, P
Culbreath, AK
Pandey, MK
Holbrook, C
Varshney, RK
Guo, B
AF Wang, H.
Khera, P.
Culbreath, A. K.
Pandey, M. K.
Holbrook, C.
Varshney, R. K.
Guo, B.
TI QTL analysis of disease resistance to leaf spots and TSWV in peanut
(Arachis hypogaea)
SO PHYTOPATHOLOGY
LA English
DT Meeting Abstract
CT Meeting of the Southern-Division of American-Phytopathological-Society
(APS)
CY FEB 01-02, 2015
CL Atlanta, GA
SP Amer Phytopathol Soc, So Div
C1 [Wang, H.; Culbreath, A. K.] Univ Georgia, Tifton, GA USA.
[Khera, P.; Pandey, M. K.; Varshney, R. K.] Int Crops Res Inst Semi Arid Trop, Patancheru, Andhra Pradesh, India.
[Holbrook, C.; Guo, B.] USDA ARS, Tifton, GA 31793 USA.
RI Varshney, Rajeev/C-5295-2014
OI Varshney, Rajeev/0000-0002-4562-9131
NR 0
TC 0
Z9 0
U1 0
U2 3
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
SU 2
PG 1
WC Plant Sciences
SC Plant Sciences
GA CP0VR
UT WOS:000359594700059
ER
PT J
AU Yang, L
Fountain, JC
Ni, X
Ji, P
Lee, RD
Scully, BT
Kemerait, RC
Guo, B
AF Yang, L.
Fountain, J. C.
Ni, X.
Ji, P.
Lee, R. D.
Scully, B. T.
Kemerait, R. C.
Guo, B.
TI Maize sensitivity to drought stress is associated with differential
responses to reactive oxygen species
SO PHYTOPATHOLOGY
LA English
DT Meeting Abstract
CT Meeting of the Southern-Division of American-Phytopathological-Society
(APS)
CY FEB 01-02, 2015
CL Atlanta, GA
SP Amer Phytopathol Soc, So Div
C1 [Yang, L.; Fountain, J. C.; Ji, P.; Lee, R. D.; Kemerait, R. C.; Guo, B.] Univ Georgia, Tifton, GA USA.
[Ni, X.] USDA ARS, Tifton, GA 31793 USA.
[Scully, B. T.] USDA ARS, Ft Pierce, FL USA.
NR 0
TC 0
Z9 0
U1 1
U2 3
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
SU 2
PG 1
WC Plant Sciences
SC Plant Sciences
GA CP0VR
UT WOS:000359594700068
ER
PT J
AU Baranowski, T
AF Baranowski, Tom
TI Sexual Health in the 21st Century
SO GAMES FOR HEALTH JOURNAL
LA English
DT Editorial Material
ID PREVENTION; GAMES
C1 ARS, Pediat Behav Nutr & Phys Act, USDA, Childrens Nutr Res Ctr,Dept Pediat,Baylor Coll Me, Houston, TX 77047 USA.
RP Baranowski, T (reprint author), ARS, Pediat Behav Nutr & Phys Act, USDA, Childrens Nutr Res Ctr,Dept Pediat,Baylor Coll Me, Houston, TX 77047 USA.
OI Baranowski, Tom/0000-0002-0653-2222
NR 11
TC 0
Z9 0
U1 1
U2 2
PU MARY ANN LIEBERT, INC
PI NEW ROCHELLE
PA 140 HUGUENOT STREET, 3RD FL, NEW ROCHELLE, NY 10801 USA
SN 2161-783X
EI 2161-7856
J9 GAMES HEALTH J
JI Games Health J.
PD APR
PY 2015
VL 4
IS 2
BP 67
EP 68
DI 10.1089/g4h.2014.0141
PG 2
WC Health Policy & Services; Public, Environmental & Occupational Health;
Rehabilitation
SC Health Care Sciences & Services; Public, Environmental & Occupational
Health; Rehabilitation
GA CJ9CN
UT WOS:000355800100001
PM 26181799
ER
PT J
AU Finkenstadt, VL
Fanta, GF
Felker, FC
Hornback, K
Selling, GW
AF Finkenstadt, Victoria L.
Fanta, George F.
Felker, Frederick C.
Hornback, Kathy
Selling, Gordon W.
TI Structure-Function Properties of Amylose-Oleic Acid Inclusion Complexes
Grafted with Poly(methyl acrylate)
SO JOURNAL OF BIOBASED MATERIALS AND BIOENERGY
LA English
DT Article; Proceedings Paper
CT 13th International Symposium on Bioplastics Biocomposites and
Biorefining: Moving Towards a Sustainable Bioeconomy
CY MAY 19-24, 2014
CL Guelph, CANADA
DE Starch; Spherulite; Inclusion Complex; Graft Copolymer; Poly(nnethyl
acrylate); Extrusion
ID STEAM JET COOKING; STARCH-G-POLYSTYRENE; STARCH-G-POLY(METHYL ACRYLATE);
MECHANICAL-PROPERTIES; METHYL ACRYLATE; COPOLYMERS; EXTRUSION;
CORNSTARCH; MORPHOLOGY
AB Spherulites, produced by steam jet-cooking high-amylose starch and oleic acid to form amylose inclusion complexes, were graft polymerized with methyl acrylate, both before and after removal of un-complexed amylopectin. For comparison, granular high-amylose corn starch was graft polymerized in a similar manner. The amount of grafted and ungrafted poly(methyl acrylate) were similar for all of the starch-graft-poly(methyl acrylate) copolymers. Starch graft copolymers were processed by extrusion, and tensile properties of the extrudates were determined. Although extruded ribbons with similar tensile strengths were obtained from the three starch-PMA graft copolymers, higher values for % elongation were obtained from the spherulite-containing copolymers. Analyses of the graft copolymers indicated that the molecular weights of grafted and ungrafted PMA were similar for the three copolymers. The interaction of the grafted starch material and the homopolymer in extrudates as revealed by iodine staining and scanning electron microscopy supported the conclusion that the higher % elongation values may be attributable to the smaller size of the amylose-oleic acid spherulites compared with unmodified starch granules.
C1 [Finkenstadt, Victoria L.; Fanta, George F.; Hornback, Kathy; Selling, Gordon W.] ARS, Plant Polymer Res, USDA, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
[Felker, Frederick C.] ARS, Funct Foods Res, USDA, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
RP Finkenstadt, VL (reprint author), ARS, Plant Polymer Res, USDA, Natl Ctr Agr Utilizat Res, 1815 N Univ St, Peoria, IL 61604 USA.
EM victoria.finkenstadt@ars.usda.gov
NR 21
TC 0
Z9 0
U1 2
U2 7
PU AMER SCIENTIFIC PUBLISHERS
PI VALENCIA
PA 26650 THE OLD RD, STE 208, VALENCIA, CA 91381-0751 USA
SN 1556-6560
EI 1556-6579
J9 J BIOBASED MATER BIO
JI J. Biobased Mater. Bioenergy
PD APR
PY 2015
VL 9
IS 2
BP 258
EP 265
DI 10.1166/jbmb.2015.1512
PG 8
WC Chemistry, Applied; Energy & Fuels; Materials Science, Biomaterials
SC Chemistry; Energy & Fuels; Materials Science
GA CN7OR
UT WOS:000358624400019
ER
PT J
AU Enloe, SF
Loewenstein, NJ
Streett, D
Lauer, DK
AF Enloe, Stephen F.
Loewenstein, Nancy J.
Streett, Douglas
Lauer, Dwight K.
TI Herbicide Treatment and Application Method Influence Root Sprouting in
Chinese Tallowtree (Triadica sebifera)
SO INVASIVE PLANT SCIENCE AND MANAGEMENT
LA English
DT Article
DE Basal bark; cut stump; foliar treatment; individual plant treatment;
invasive plant control
ID TREE SAPIUM-SEBIFERUM; EUPHORBIACEAE; MANAGEMENT; DISPERSAL
AB Chinese tallowtree is an invasive tree found throughout the southeastern United States and in California. Its negative effects can be seen in numerous natural and managed ecosystems, including bottomland hardwood forests, pastures, pine plantations, and along lakes, ponds, streams, and rivers. Despite its troublesome presence for many decades, relatively few effective control strategies are available. Root sprouting following management efforts is a major impediment to successful control. Studies were conducted in Alabama and Louisiana at three locations to test several herbicides for cut stump, basal bark, and foliar individual plant treatment (IPT) methods. Herbicide treatments included triclopyr amine and ester formulations, imazamox, aminopyralid, aminocyclopyrachlor, and fluroxypyr. Data were collected just before leaf senescence at one and two growing seasons after treatment and included Chinese tallowtree foliar cover, number of stump or root collar sprouts, and number of sprouts originating from lateral roots within a 1-m radius of each tree. For the cut stump and basal bark studies, most herbicide treatments prevented sprouting from the stump or root collar region better than they did from the lateral roots. Aminopyralid reduced total sprouting better than all other treatments in the cut stump study. The high rates of aminocyclopyrachlor and fluroxypyr resulted in the highest mortality in the basal bark study. Aminocyclopyrachlor reduced total sprouting better than all other herbicides in the foliar treatment study. Triclopyr amine and ester formulations, which are commercial standards, did not consistently control Chinese tallowtree across these IPT studies. These studies provide some promising treatments to increase the number of effective tools that can be used to manage Chinese tallowtree. Additional research is needed to address the prolific nature of lateral root sprouting following any of these treatment methods.
C1 [Enloe, Stephen F.] Univ Florida, Dept Agron, Gainesville, FL 32611 USA.
Auburn Univ, Sch Forestry & Wildlife Sci, Auburn, AL 36849 USA.
US Forest Serv, USDA, Insects Dis & Invas Plants, Pineville, LA 71360 USA.
Silvics Analyt, Wingate, NC 28174 USA.
RP Enloe, SF (reprint author), Univ Florida, Dept Agron, Gainesville, FL 32611 USA.
EM sfenloe@ufl.edu
FU USDA Forest Service, Southern Research Station
FX The authors would like to thank Randy Martin and Rusty Grayden for use
of the two Alabama sites. This study was funded under a cooperative
agreement with the USDA Forest Service, Southern Research Station.
NR 26
TC 1
Z9 1
U1 5
U2 11
PU WEED SCI SOC AMER
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 1939-7291
EI 1939-747X
J9 INVAS PLANT SCI MANA
JI Invasive Plant Sci. Manag.
PD APR-JUN
PY 2015
VL 8
IS 2
BP 160
EP 168
DI 10.1614/IPSM-D-14-00062.1
PG 9
WC Plant Sciences
SC Plant Sciences
GA CM8HU
UT WOS:000357940900006
ER
PT J
AU Madsen, JD
Wersal, RM
Woolf, TE
AF Madsen, John D.
Wersal, Ryan M.
Woolf, Thomas E.
TI Operational Control of Eurasian Watermilfoil (Myriophyllum spicatum) and
Impacts to the Native Submersed Aquatic Macrophyte Community in Lake
Pend Oreille, Idaho
SO INVASIVE PLANT SCIENCE AND MANAGEMENT
LA English
DT Article
DE Aquatic macrophyte management; herbicide selectivity; invasive species;
lake management; native macrophyte
ID SPECIES SELECTIVITY EVALUATION; PLANT COMMUNITY; ENVIRONMENTAL-FACTORS;
STUCKENIA-PECTINATA; ECOSYSTEM PROCESSES; INVASION SUCCESS; SAGO
PONDWEED; HERON LAKE; NEW-YORK; VEGETATION
AB Lake Pend Oreille is the largest (36,000 ha or 91,000 ac) freshwater lake in Idaho. Approximately 27% or 10,000 ha of the lake is littoral zone habitat supporting aquatic macrophyte growth. Eurasian watermilfoil has invaded large areas of this littoral zone habitat, with early estimates suggesting approximately 2,000 ha by the mid 2000s. Idaho State Department of Agriculture developed a state-wide eradication program in response to the threats posed by Eurasian watermilfoil, which attempts to quantify Eurasian watermilfoil infestations and its effects on the native plant community. Littoral zone point intercept surveys were conducted in 2007 and 2008 to monitor the trends in aquatic macrophyte community structure and assess management strategies against Eurasian watermilfoil. Lake Pend Oreille has a species-rich aquatic macrophyte community of more than 50 species. Lake-wide, the presence of Eurasian watermilfoil significantly decreased from 2007 (12.5%) to 2008 (7.9%). The native plant community has remained stable from 2007 to 2008 despite lake-wide management activities. In managed areas, the frequency of Eurasian watermilfoil during the 2008 assessment was 23.6% after herbicide applications. This represents a 63% reduction in Eurasian watermilfoil presence from the 2007 (64.5%) survey. When 2,4-D was combined with endothall, the presence of Eurasian watermilfoil declined from 63% (2007) to 36.5% in 2008. Eurasian watermilfoil treated with triclopyr also declined significantly, 64% to 18.2%. When all treatment methods were pooled and compared with areas that were not treated, the presence of Eurasian watermilfoil was significantly greater (52.5%) in untreated areas as opposed to treated areas (23%). The removal of Eurasian watermilfoil resulted in an increase in native species in most areas. Currently, there is as little as 200 ha of Eurasian watermilfoil remaining, which represents an overall reduction of 90% in approximately 7 yr of management.
C1 [Madsen, John D.] Univ Calif Davis, USDA ARS, Exot & Invas Weeds Res Unit, Dept Plant Sci, Davis, CA 95616 USA.
[Wersal, Ryan M.] Lonza, Alpharetta, GA 30004 USA.
[Woolf, Thomas E.] Idaho State Dept Agr, Boise, ID 83701 USA.
RP Madsen, JD (reprint author), Univ Calif Davis, USDA ARS, Exot & Invas Weeds Res Unit, Dept Plant Sci, Davis, CA 95616 USA.
EM jmadsen@ucdavis.edu
FU Idaho State Department of Agriculture through a contract with the
Aquatic Ecosystem Restoration Foundation
FX Funding was provided by the Idaho State Department of Agriculture
through a contract with the Aquatic Ecosystem Restoration Foundation,
Mr. Carlton Layne, Executive Director. We thank Brad Bluemer, who
provided historical information regarding Lake Pend Oreille and also
provided additional logistic support during our surveys, which was
invaluable. We also thank Dr. Wilfredo Robles, Joshua Cheshier, Jimmy
Peeples, and Waldemar Robles. Dr. Bill Haller, Dr. Kurt Getsinger, and
Dr. Wilfredo Robles provided reviews of an earlier version of this
manuscript. Mention of a manufacturer does not constitute a warranty or
guarantee of the product by the U.S. Department of Agriculture or an
endorsement over other products not mentioned.
NR 39
TC 3
Z9 3
U1 4
U2 26
PU WEED SCI SOC AMER
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 1939-7291
EI 1939-747X
J9 INVAS PLANT SCI MANA
JI Invasive Plant Sci. Manag.
PD APR-JUN
PY 2015
VL 8
IS 2
BP 219
EP 232
DI 10.1614/IPSM-D-14-00008.1
PG 14
WC Plant Sciences
SC Plant Sciences
GA CM8HU
UT WOS:000357940900012
ER
PT J
AU Smith, BS
Sheley, RL
AF Smith, Brenda S.
Sheley, Roger L.
TI Implementing Strategic Weed Prevention Programs to Protect Rangeland
Ecosystems
SO INVASIVE PLANT SCIENCE AND MANAGEMENT
LA English
DT Article
DE Containment zone; early detection; high-risk area; prevention framework;
protection zone; weed awareness
ID INVASIVE-PLANT MANAGEMENT; SAGEBRUSH-STEPPE; UNITED-STATES; ANNUAL
GRASS; SPREAD; COMMUNITIES; VEGETATION; DISPERSAL; LANDSCAPE; DIVERSITY
AB Weed prevention is recognized as one of the most cost-effective management strategies for invasive plants. In the field of invasive plant management increasing emphasis is being directed toward proactive management. However, land managers are still somewhat reluctant to aggressively employ prevention programs. Part of this reluctance could be due to lack of understanding of what a comprehensive prevention program entails. The purpose of this paper is to improve strategic decision-making for site-specific prevention programs, such as those on ranches or in watersheds. Our interest is in advancing prevention planning for land managers-the people who are faced with the constant pressure of potential invasive species infestations on a day-to-day basis. To facilitate more widespread use of prevention programs we are proposing definitions for key terminology to standardize and facilitate communication about prevention programs. Additionally, we present a flow model with the steps necessary to successfully implement such programs. The model has three categories from which specific prevention planning occurs: (1) education, (2) early detection and eradication, and (3) interruption of movement. The flow model directs users through a series of interlinked steps. Finally, we provide a case study in which a ranch manager implemented a prevention program using this framework. By using this model, managers are poised to conduct more strategic planning. This model also has applications in outreach and education programs to assist land managers in prevention planning.
C1 [Smith, Brenda S.; Sheley, Roger L.] USDA ARS, Eastern Oregon Agr Res Ctr, Burns, OR 97720 USA.
RP Smith, BS (reprint author), USDA ARS, Eastern Oregon Agr Res Ctr, 67826-A Hwy 205, Burns, OR 97720 USA.
EM brenda.smith@oregonstate.edu
NR 50
TC 0
Z9 0
U1 3
U2 14
PU WEED SCI SOC AMER
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 1939-7291
EI 1939-747X
J9 INVAS PLANT SCI MANA
JI Invasive Plant Sci. Manag.
PD APR-JUN
PY 2015
VL 8
IS 2
BP 233
EP 242
DI 10.1614/IPSM-D-13-00075.1
PG 10
WC Plant Sciences
SC Plant Sciences
GA CM8HU
UT WOS:000357940900013
ER
PT J
AU Miles, JR
Vallet, JL
Ford, JJ
Freking, BA
Oliver, WT
Rempel, LA
AF Miles, J. R.
Vallet, J. L.
Ford, J. J.
Freking, B. A.
Oliver, W. T.
Rempel, L. A.
TI Contributions of the maternal uterine environment and piglet genotype on
weaning survivability potential: II. Piglet growth, lactation
performance, milk composition, and piglet blood profiles during
lactation following reciprocal embryo transfers between Meishan and
White crossbred gilts
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE blood components; growth; lactation; piglet
ID SOW MILK; ALPHA-FETOPROTEIN; BIRTH-WEIGHT; PIGS; METABOLISM; COLOSTRUM;
PROTEIN; PARAMETERS; ALBUMIN; CROSSES
AB Crossbreeding studies between Meishan (MS) and Large White (LW) pigs have illustrated that increased piglet growth before weaning is attributed to the maternal genotype of LW dams. The objective of this study was to determine the contributions of the maternal uterine environment (MUE), piglet genotype (PigG), piglet age (PA), and their interactions on piglet growth, lactation performance, milk composition, and piglet blood profiles during lactation following reciprocal embryo transfers between MS and White crossbred (WC) gilts. Twenty-five successful pregnancies were generated by embryo transfer in 2 farrowing years representing all MUE x PigG combinations: MS x MS (n = 4 litters), MS x WC (n = 7 litters), WC x MS (n = 7 litters), and WC x WC (n = 7 litters). At d 1 and 10 and at weaning, piglets (n = 147, n = 96, and n = 94, respectively) were weighed and blood samples were collected and measured for hematocrit, hemoglobin, glucose, nitrogen, NEFA, albumin, lactate, and cortisol. In addition, sows were manually milked from a medial mammary gland to determine milk composition. All data were analyzed by ANOVA using MIXED model procedures with the fixed effects of MUE, PigG, PA, and their interactions. Piglet weight was greater (P < 0.001) in piglets from WC dams compared to MS dams at d 10 and weaning but not at d 1. In addition, ADG were greater (P < 0.05) from piglets from WC dams compared to MS dams throughout lactation. However, milk composition was greater (P < 0.05) for GE and fat content from MS dams compared to WC dams, illustrating differences in milk quality between the breeds. There were significant MUE x PigG x PA interactions for hematocrit and hemoglobin levels in which greater (P < 0.001) levels were observed in MS piglets, irrespective of MUE, at d 1 of lactation and in MS piglets from MS dams at d 10 of lactation. Blood glucose was greater (P = 0.01) at d 1 in piglets from WC dams regardless of PigG but, at weaning, glucose was greater (P = 0.01) in WC piglets regardless of MUE. Serum NEFA levels were greater (P = 0.02) in piglets from MS dams throughout the lactation period. This study demonstrated that WC dams were superior to MS dams for piglet growth during lactation, in agreement with previous crossbreeding studies. However, blood components measured displayed complex interactions between the piglet and maternal breed, which signify possible mechanisms for improved preweaning survivability but slower lactational growth of MS piglets.
C1 [Miles, J. R.; Vallet, J. L.; Ford, J. J.; Freking, B. A.; Oliver, W. T.; Rempel, L. A.] ARS, USDA, US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
RP Miles, JR (reprint author), ARS, USDA, US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
EM jeremy.miles@ars.usda.gov
FU USDA-ARS, CRIS [5438-31000-084]
FX Mention of trade names or commercial products in this article is solely
for the purpose of providing specific information and does not imply
recommendation or endorsement by the USDA. The authors would like to
thank Susan Hassler, Troy Gramke, and Jeff Waechter for technical
assistance in collection and processing of samples and data collection,
Linda Parnell for secretarial assistance, and the USMARC swine crew for
animal husbandry. Research supported by USDA-ARS, CRIS project no.
5438-31000-084.
NR 30
TC 0
Z9 0
U1 4
U2 11
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD APR
PY 2015
VL 93
IS 4
BP 1555
EP 1564
DI 10.2527/jas.2014-8426
PG 10
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA CL6QA
UT WOS:000357090700013
PM 26020177
ER
PT J
AU Villalba, JJ
Cabassu, R
Gunter, SA
AF Villalba, J. J.
Cabassu, R.
Gunter, S. A.
TI Forage choice in pasturelands: Influence on cattle foraging behavior and
performance
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE activity; grazing; legumes; mixed diets; tall fescue
ID INFECTED TALL FESCUE; GRAZING BEHAVIOR; DAIRY-COWS; IN-VITRO; FEEDING
MOTIVATION; BIRDSFOOT-TREFOIL; REED CANARYGRASS; DIVERSE PASTURES;
VARIED DIETS; SHEEP
AB We determined if combinations of adjacent pastures of 3 forage species led to complementary relationships that influenced animal behavior and performance over monocultures. Grazing bouts, behavioral levels of activity, blood urea N (BUN), chemical composition of feces, BW, and herbage biomass before and after grazing were monitored when beef calves strip-grazed 3 replications of 4 treatments from June 14 through August 23, 2013 (9 animals/treatment). Animals grazed monocultures of: 1) tall fescue (TF), 2) alfalfa (ALF), 3) sainfoin (SAN), or 4) a choice of strips of forages TF, ALF, and SAN (CHOICE). The lowest and greatest incidence of foraging bouts occurred for cattle in CHOICE and SAN, respectively (P < 0.01). Animals in CHOICE grazed SAN > ALF > TF (P < 0.01). Animals on TF and CHOICE took greater number of steps than animals grazing a monocultures of either legume (P = 0.01). Calves in TF had lower BUN (P < 0.01) and fecal CP concentration (P < 0.01) than calves grazing the remaining treatments, whereas animals in SAN showed the greatest concentrations of fecal CP (P < 0.01). Fecal NDF concentration was the greatest for animals grazing TF and the lowest for animals grazing SAN (P < 0.01), whereas fecal ADF concentration was greater for animals grazing TF and SAN than for animals grazing CHOICE and ALF (P = 0.02). Calcium, Mg, and Zn concentrations were the lowest in feces from calves grazing TF and the greatest for calves grazing a monoculture of either legume (P < 0.05). When averaging both periods, animals grazing SAN, ALF, or CHOICE gained more BW than animals grazing TF (P < 0.01). Thus, calves in CHOICE incorporated tall fescue into their diets, were more active, and displayed a lower number of grazing bouts than calves grazing monoculture of either legume. Herbage diversity may lead to levels of ADG comparable to legume monocultures with the potential benefit of maintaining plant species diversity in pasturelands.
C1 [Villalba, J. J.; Cabassu, R.] Utah State Univ, Dept Wildland Resources, Logan, UT 84322 USA.
[Gunter, S. A.] USDA ARS, Southern Plains Range Res Stn, Woodward, OK 73801 USA.
RP Gunter, SA (reprint author), USDA ARS, Southern Plains Range Res Stn, 2000 18th St, Woodward, OK 73801 USA.
EM juan.villalba@usu.edu
RI Villalba, Juan/A-5836-2010
OI Villalba, Juan/0000-0001-8868-8468
FU Utah Agricultural Experiment Station; Irrigated Pasture Grants Program;
Pleiades Foundation; ISARA-Lyon, France; Fulbright Scholar Program
FX This research was supported by grants from the Utah Agricultural
Experiment Station, the Utah Irrigated Pasture Grants Program, and the
Pleiades Foundation. Financial support for R. Cabassu from ISARA-Lyon,
France and for A. Boubaker from the Fulbright Scholar Program is
acknowledged. This paper is published with the approval of the Director,
Utah Agricultural Experiment Station, and Utah State University as
journal paper number 8737.
NR 52
TC 0
Z9 0
U1 2
U2 20
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD APR
PY 2015
VL 93
IS 4
BP 1729
EP 1740
DI 10.2527/jas.2014-8667
PG 12
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA CL6QA
UT WOS:000357090700031
PM 26020195
ER
PT J
AU Petersen, MK
Muscha, JM
Mulliniks, JT
Waterman, RC
Roberts, AJ
Rinella, MJ
AF Petersen, M. K.
Muscha, J. M.
Mulliniks, J. T.
Waterman, R. C.
Roberts, A. J.
Rinella, M. J.
TI Sources of variability in livestock water quality over 5 years in the
Northern Great Plains
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE beef cows; rangelands; water quality
ID DAIRY-COWS; DRINKING; CATTLE
AB Concentrated dissolved minerals in naturally occurring water accessible to livestock grazing semiarid landscapes can negatively influence animal productivity and well-being. Twelve indicators of water quality (Ca, Cl, Fe, F, Mg, Mn, Na, nitrate N, pH, SO4, total dissolved solids [TDS], and temperature) were measured at 45 livestock water sites over 5 yr from 2009 through 2013 at the 22,257 ha USDA-ARS Fort Keogh Livestock and Range Research Laboratory (Miles City, MT) to estimate variation. Water was sampled from 4 sources: 1) flowing surface water, 2) groundwater, 3) reservoirs, and 4) springs. The sampled area was classified by 3 cardinal compass bearings (locations): 1) north, 2) southeast, and 3) southwest of the Yellowstone River. Samples were collected twice yearly in 2 seasons, May (wet) and September (dry). Year, location, source, and season and their interactions were analyzed as a 5 x 3 x 4 x 2 factorial arrangement of treatments. A location x year interaction (P < 0.04) was found for Mg, Na, SO4, and TDS. The southwest location had the greatest concentrations in 2012 of Na, SO4, and TDS. A source x year interaction (P < 0.02) was found for Ca, Fe, F, Mg, Mn, Na, SO4, TDS, and temperature. Iron, Mg, and Mn had the greatest concentrations in flowing surface water in 2012. Greater and then lower precipitation in 2011 followed by below-average precipitation in 2012 was associated with elevated mineral concentrations in sources in the southwest location and flowing surface water sources demonstrating sources of water quality variability within time and space at the study site. Average concentrations of Ca, Cl, Mg, and nitrate N and pH levels across sources and locations did not exceed the upper maximum intake level for beef cattle. In contrast, concentrations of F, Fe, Na, SO4, and TDS at times exceeded the upper maximum level for beef cattle, indicating these minerals may negatively impact range beef cattle performance.
C1 [Petersen, M. K.; Muscha, J. M.; Waterman, R. C.; Roberts, A. J.; Rinella, M. J.] USDA ARS, Ft Keogh Livestock & Range Res Lab, Miles City, MT 59301 USA.
[Mulliniks, J. T.] Univ Tennessee, Dept Anim Sci, Crossville, TN 38571 USA.
RP Petersen, MK (reprint author), USDA ARS, Ft Keogh Livestock & Range Res Lab, Miles City, MT 59301 USA.
EM mark.petersen@ars.usda.gov
NR 23
TC 1
Z9 1
U1 2
U2 5
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD APR
PY 2015
VL 93
IS 4
BP 1792
EP 1801
DI 10.2527/jas.2014-8028
PG 10
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA CL6QA
UT WOS:000357090700036
PM 26020200
ER
PT J
AU Liu, T
Mays, AR
Turner, KE
Wu, JP
Brown, MA
AF Liu, T.
Mays, A. R.
Turner, K. E.
Wu, J. P.
Brown, M. A.
TI Relationships of milk yield and quality from six breed groups of beef
cows to preweaning average daily gain of their calves
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE beef cattle; milk yield; preweaning average daily gain; sire breed
ID RECIPROCAL-CROSS COWS; CALF WEANING WEIGHT; EFFICIENCY; ANGUS; BRAHMAN
AB Milk yield and quality influence calf preweaning growth and ultimately the sale value of the calf at weaning. This study was conducted to evaluate the relationships of milk production and quality of beef cows to calf preweaning ADG in beef cows sired by Bonsmara, Brangus, Charolais, Gelbvieh, Hereford, and Romosinuano and from Brangus dams to determine whether the relationships were homogeneous across cow breed group. Approximately 50 cows/yr were milked monthly for 6 mo in each of the 7 yr of this study. Milk traits were included in models as linear and quadratic covariates along with interactions of the covariates with sire breed. Tests for curvilinearity and homogeneity of regression coefficients indicated the relationship of calf preweaning ADG to milk yield and quality was quadratic and homogeneous across Charolais and Gelbvieh; linear and homogeneous across Bonsmara, Brangus, and Romosinuano; and linear and different from other sire breeds in Herefords (P < 0.05). Exceptions to this were in the regression of calf preweaning ADG on the natural logarithm of somatic cell count (SCC) and milk urea nitrogen (MUN). The relationship of calf preweaning ADG to SCC was quadratic in Brangus (P < 0.05) and linear in Gelbvieh (P < 0.05) with little evidence (P > 0.05) of a relationship in Bonsmara, Charolais, Hereford, or Romosinuano. There was little evidence (P > 0.05) of a relationship of calf preweaning ADG to MUN in any of the sire breed groups. Results from this study confirmed the importance of the influence of milk yield and quality on calf preweaning growth but indicated this influence can depend on the breed composition of the cow. Furthermore, results suggest that breed origin or adaptation may have influenced the relationships of calf preweaning ADG to cow milk yield and quality.
C1 [Liu, T.; Wu, J. P.] Gansu Agr Univ, Fac Anim Sci & Technol, Lanzhou 730070, Gansu, Peoples R China.
[Mays, A. R.] FL Emmert Co, Cincinnati, OH 45214 USA.
[Turner, K. E.; Brown, M. A.] USDA ARS, Grazinglands Res Lab, El Reno, OK 73036 USA.
RP Brown, MA (reprint author), USDA ARS, Grazinglands Res Lab, El Reno, OK 73036 USA.
EM michaelbrown@atlinkwifi.com
FU Gansu Agricultural University Project "Improved grassland animal
husbandry production system in Qi Lian mountain area" [1104WCGA191];
[USDA-ARS CRIS 6218-31630-006-00D]
FX Project was funded by USDA-ARS CRIS 6218-31630-006-00D and Gansu
Agricultural University Project "Improved grassland animal husbandry
production system in Qi Lian mountain area" (1104WCGA191). Mention of
trade names or commercial products in this publication is solely for the
purpose of providing specific information and does not imply
recommendation or endorsement by the U.S. Department of Agriculture or
collaborating Universities. The USDA is an equal opportunity provider
and employer.
NR 16
TC 1
Z9 1
U1 4
U2 12
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD APR
PY 2015
VL 93
IS 4
BP 1859
EP 1864
DI 10.2527/jas.2014-8220
PG 6
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA CL6QA
UT WOS:000357090700043
PM 26020207
ER
PT J
AU Taylor, JB
Smith, DJ
AF Taylor, J. B.
Smith, D. J.
TI Continuous, low-dose oral exposure to sodium chlorate reduces fecal
generic Escherichia coli in sheep feces without inducing clinical
chlorate toxicosis
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE antibiotic resistance; chlorate; diarrhea; Escherichia coli; shedding;
toxicity
ID O157-H7 POPULATIONS; PIGS; SUPPLEMENTATION; METHEMOGLOBIN; COLONIZATION;
ANIMALS; PRODUCT; BLOOD; FOOD; GUT
AB Our objectives were to determine an effective, yet safe, daily dose of sodium chlorate for reducing fecal shedding of generic Escherichia coli in mature ewes. In a completely randomized experimental design, 25 Targhee ewes (age similar to 18 mo; BW = 62.5 +/- 7.3 kg, mean +/- SD) were assigned randomly to 1 of 5 sodium chlorate treatments, which were administered in the drinking water for 5 consecutive days. Treatments were control group (no sodium chlorate) and 4 targeted levels of daily sodium chlorate intake: 30, 60, 90, and 120 mg.kg(-1) BW.d(-1) for 5 d. Individual ewe ad libitum intake of water (with treatments) was measured daily, and BW was measured at the beginning of and 15 and 51 d after the 5-d treatment period. Serum chlorate, whole blood methemoglobin and packed-cell volume (PCV), and fecal generic E. coli and general Enterobacteriaceae coliforms were measured from corresponding samples collected at the end of the 5-d treatment period. Average daily intakes of sodium chlorate from drinking water treatments were 95%, 91%, 90%, and 83% of the target treatment intakes of 30, 60, 90, and 120 mg.kg(-1) BW.d(-1), respectively. Daily sodium chlorate intake remained constant for all treatment groups except for ewes offered 120 mg NaClO3.kg(-1) BW.d(-1), which decreased (quadratic; P = 0.04) over the course of the 5-d treatment period. This decrease in sodium chlorate intake indicated that the 120-mg NaClO3 level may have induced either toxicity and/or an aversion to the drinking water treatment. Serum chlorate concentrations increased (quadratic; P < 0.001) with increasing sodium chlorate intake. At the end of the 5-d treatment period, mean (least squares +/- SEM) serum chlorate concentrations for ewes offered 30, 60, 90, and 120 mg NaClO3.kg(-1) BW.d(-1) were 15.6 +/- 14.1, 32.8 +/- 15.8, 52.9 +/- 14.1, and 90.3 +/- 14.1 mu g/mL, respectively. Whole blood methemoglobin and PCV were similar (P = 0.31 to 0.81) among the control group and ewes offered sodium chlorate. Likewise, BW was not affected by sodium chlorate (P > 0.27). Ewes consuming approximately 55 mg NaClO3.kg(-1) BW.d(-1) or more (i.e., ewes offered 60, 90, and 120 mg) had a > 1.4 log unit reduction in fecal E. coli and Enterobacteriaceae coliforms compared with control ewes. We suggest that for a short-term, 5-d dosing strategy, 55 to 81 mg NaClO3.kg(-1) BW.d(-1) is an effective, yet safe, daily oral dose range for mature ewes to achieve a 97% to 99% reduction in fecal shedding of generic E. coli.
C1 [Taylor, J. B.] USDA ARS, Range Sheep Prod Efficiency Res Unit, Dubois, ID 83423 USA.
[Smith, D. J.] USDA ARS, Anim Metab Agr Chem Res Unit, Fargo, ND 58102 USA.
RP Taylor, JB (reprint author), USDA ARS, Range Sheep Prod Efficiency Res Unit, Dubois, ID 83423 USA.
EM bret.taylor@ars.usda.gov
NR 21
TC 0
Z9 0
U1 2
U2 4
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD APR
PY 2015
VL 93
IS 4
BP 1942
EP 1951
DI 10.2527/jas.2014-8568
PG 10
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA CL6QA
UT WOS:000357090700053
PM 26020217
ER
PT J
AU Acharya, M
Burke, JM
Coffey, KP
Kegley, EB
Miller, JE
Huff, GR
Smyth, E
Terrill, TH
Mosjidis, JA
Rosenkrans, C
AF Acharya, M.
Burke, J. M.
Coffey, K. P.
Kegley, E. B.
Miller, J. E.
Huff, G. R.
Smyth, E.
Terrill, T. H.
Mosjidis, J. A.
Rosenkrans, C., Jr.
TI Changes in hematology, serum biochemistry, and gastrointestinal nematode
infection in lambs fed sericea lespedeza with or without dietary sodium
molybdate
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE hematology; molybdenum; sericea lespedeza; serum biochemistry; sheep
ID TANNIN-CONTAINING FORAGE; HAEMONCHUS-CONTORTUS; CONDENSED TANNINS;
NATURAL DEWORMER; GROWTH-RATE; GOATS; SHEEP; MOLYBDENUM; HAY; CUNEATA
AB Sericea lespedeza (SL; Lespedeza cuneata) is a legume rich in condensed tannins that can be grazed or fed to small ruminants for parasite control. Condensed tannins, a secondary plant compound in SL, may lead to unintended consequences such as changes in production. In our preliminary research, there was consistently a reduction in serum and liver concentrations of Mo. The objective of this study was to determine the effect of SL with or without Mo supplementation on changes in BW, hematology, and serum biochemistry in lambs. Thirty ram lambs weaned in May (84 +/- 1.5 d of age; 27 +/- 1.1 kg) were blocked by BW, breed type (full or three-fourths Katahdin), and EBV of parasite resistance and randomly assigned to be fed 900 g of alfalfa-based supplement (CON; n = 10) or SL-based supplement (n = 20) for 103 d. Supplements were formulated to be isonitrogenous and isocaloric and to meet trace mineral requirements. Within the SL diet, half of the lambs received 490 mg sodium molybdate weekly (SLMO). Body condition scores and BW were determined every 14 d and blood and feces collected to determine hematological and serum biochemical profiles and fecal egg counts (FEC). Data were analyzed using a mixed model with repeated measures and orthogonal contrasts. The white blood cell counts tended to be reduced in SL- and SLMO-fed lambs compared with CON-fed lambs (P < 0.06), which was associated with a reduction in neutrophils (P < 0.001). Red blood cell counts were also reduced in SL but not SLMO lambs compared with CON lambs (P < 0.04). There was a reduction in blood packed cell volume (P < 0.04) and serum concentrations of albumin (P < 0.001) and creatinine (P < 0.02) in both SL and SLMO lambs compared with CON lambs. Similarly, concentrations of blood urea nitrogen were reduced in both SL and SLMO lambs, but differences among dietary treatments disappeared after 42 d of feeding (treatment x day, P < 0.004). Serum concentrations of total proteins were reduced only in SLMO lambs compared with other lambs (P < 0.001). Body weight and FEC were similar among dietary treatments. Means of all measurements were within a normal range, even though there were subtle but significant differences between dietary groups. Feeding a diet high in condensed tannin-rich SL did not lead to serious effects on hematology or serum biochemistry in lambs.
C1 [Acharya, M.; Coffey, K. P.; Kegley, E. B.; Smyth, E.; Rosenkrans, C., Jr.] Univ Arkansas, Dept Anim Sci, Fayetteville, AR 72701 USA.
[Burke, J. M.; Smyth, E.] USDA ARS, Dale Bumpers Small Farms Res Ctr, Booneville, AR 72927 USA.
[Miller, J. E.] Louisiana State Univ, Sch Vet Med, Dept Pathobiol Sci, Baton Rouge, LA 70803 USA.
[Huff, G. R.] USDA ARS, Poultry Prod & Product Safety Res, Fayetteville, AR 72701 USA.
[Terrill, T. H.] Ft Valley State Univ, Agr Res Stn, Ft Valley, GA 31030 USA.
[Mosjidis, J. A.] Auburn Univ, Dept Agron & Soils, Auburn, AL 36849 USA.
RP Burke, JM (reprint author), USDA ARS, Dale Bumpers Small Farms Res Ctr, Booneville, AR 72927 USA.
EM joan.burke@ars.usda.gov
FU USDA NIFA Organic Research and Education Initiative [2010-51300-21641];
USDA NIFA Small Business Innovative Research program [2011-33610-30836]
FX Supported by USDA NIFA Organic Research and Education Initiative
(project no. 2010-51300-21641) and USDA NIFA Small Business Innovative
Research program (project no. 2011-33610-30836). Mention of trade names
or commercial products in this manuscript is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the U.S. Department of Agriculture. The USDA is an equal
opportunity provider and employer.
NR 49
TC 3
Z9 3
U1 3
U2 15
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD APR
PY 2015
VL 93
IS 4
BP 1952
EP 1961
DI 10.2527/jas.2014-8584
PG 10
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA CL6QA
UT WOS:000357090700054
PM 26020218
ER
PT J
AU Fayer, R
Esposito, DH
Dubey, JP
AF Fayer, Ronald
Esposito, Douglas H.
Dubey, Jitender P.
TI Human Infections with Sarcocystis Species
SO CLINICAL MICROBIOLOGY REVIEWS
LA English
DT Review
ID MUSCULAR SARCOCYSTOSIS; SKELETAL-MUSCLE; TIOMAN ISLAND; RISK-FACTOR;
MALAYSIA; NESBITTI; SARCOSPORIDIOSIS; MYOSITIS; PREVALENCE; OUTBREAK
AB Recurrent outbreaks of muscular sarcocystosis among tourists visiting islands in Malaysia have focused international attention on sarcocystosis, a disease once considered rare in humans. Sarcocystis species require two hosts, definitive and intermediate, to complete their life cycle. Humans can serve as definitive hosts, with intestinal sarcocystosis for two species acquired from eating undercooked meat: Sarcocystis hominis, from beef, and Sarcocystis suihominis, from pork. Symptoms such as nausea, stomachache, and diarrhea vary widely depending on the number of cysts ingested but appear more severe with pork than with beef. Humans serve as intermediate hosts for Sarcocystis nesbitti, a species with a reptilian definitive host, and possibly other unidentified species, acquired by ingesting sporocysts from feces-contaminated food or water and the environment; infections have an early phase of development in vascular endothelium, with illness that is difficult to diagnose; clinical signs include fever, headache, and myalgia. Subsequent development of intramuscular cysts is characterized by myositis. Presumptive diagnosis based on travel history to tropical regions, elevated serum enzyme levels, and eosinophilia is confirmed by finding sarcocysts in muscle biopsy specimens. There is no vaccine or confirmed effective antiparasitic drug for muscular sarcocystosis, but anti-inflammatory drugs may reduce symptoms. Prevention strategies are also discussed.
C1 [Fayer, Ronald] ARS, USDA, Beltsville, MD 20705 USA.
[Dubey, Jitender P.] ARS, USDA, Anim Parasit Dis Lab, Beltsville, MD USA.
[Esposito, Douglas H.] Ctr Dis Control & Prevent, Div Global Migrat & Quarantine, Natl Ctr Emerging & Zoonot Infect Dis, Atlanta, GA USA.
RP Fayer, R (reprint author), ARS, USDA, Beltsville, MD 20705 USA.
EM ronald.fayer@ars.usda.gov
NR 88
TC 19
Z9 20
U1 4
U2 15
PU AMER SOC MICROBIOLOGY
PI WASHINGTON
PA 1752 N ST NW, WASHINGTON, DC 20036-2904 USA
SN 0893-8512
EI 1098-6618
J9 CLIN MICROBIOL REV
JI Clin. Microbiol. Rev.
PD APR
PY 2015
VL 28
IS 2
BP 295
EP 311
DI 10.1128/CMR.00113-14
PG 17
WC Microbiology
SC Microbiology
GA CK6SY
UT WOS:000356359400002
PM 25715644
ER
PT J
AU Calancie, L
Leeman, J
Pitts, SBJ
Khan, LK
Fleischhacker, S
Evenson, KR
Schreiner, M
Byker, C
Owens, C
McGuirt, J
Barnidge, E
Dean, W
Johnson, D
Kolodinsky, J
Piltch, E
Pinard, C
Quinn, E
Whetstone, L
Ammerman, A
AF Calancie, Larissa
Leeman, Jennifer
Pitts, Stephanie B. Jilcott
Khan, Laura Kettel
Fleischhacker, Sheila
Evenson, Kelly R.
Schreiner, Michelle
Byker, Carmen
Owens, Clint
McGuirt, Jared
Barnidge, Ellen
Dean, Wesley
Johnson, Donna
Kolodinsky, Jane
Piltch, Emily
Pinard, Courtney
Quinn, Emilee
Whetstone, Lauren
Ammerman, Alice
TI Nutrition-Related Policy and Environmental Strategies to Prevent Obesity
in Rural Communities: A Systematic Review of the Literature, 2002-2013
SO PREVENTING CHRONIC DISEASE
LA English
DT Review
ID REDUCE CHILDHOOD OBESITY; ARKANSAS ACT 1220; DIABETES PREVENTION;
PHYSICAL-ACTIVITY; 1ST NATIONS; PSYCHOSOCIAL FACTORS; DISEASE
PREVENTION; UNITED-STATES; HEALTHY FOODS; INTERVENTION
AB Introduction
Residents of rural communities in the United States are at higher risk for obesity than their urban and suburban counterparts. Policy and environmental-change strategies supporting healthier dietary intake can prevent obesity and promote health equity. Evidence in support of these strategies is based largely on urban and suburban studies; little is known about use of these strategies in rural communities. The purpose of this review was to synthesize available evidence on the adaptation, implementation, and effectiveness of policy and environmental obesity-prevention strategies in rural settings.
Methods
The review was guided by a list of Centers for Disease Control and Prevention Recommended Community Strategies and Measurements to Prevent Obesity in the United States, commonly known as the "COCOMO" strategies. We searched PubMed, Cumulative Index of Nursing and Allied Health Literature, Public Affairs Information Service, and Cochrane databases for articles published from 2002 through 2013 that reported findings from research on nutrition-related policy and environmental strategies in rural communities in the United States and Canada. Two researchers independently abstracted data from each article, and resolved discrepancies by consensus.
Results
Of the 663 articles retrieved, 33 met inclusion criteria. The interventions most commonly focused on increasing access to more nutritious foods and beverages or decreasing access to less nutritious options. Rural adaptations included accommodating distance to food sources, tailoring to local food cultures, and building community partnerships.
Conclusions
Findings from this literature review provide guidance on adapting and implementing policy and environmental strategies in rural communities.
C1 [Leeman, Jennifer; Evenson, Kelly R.; Schreiner, Michelle; Owens, Clint; McGuirt, Jared; Ammerman, Alice] Univ N Carolina, Chapel Hill, NC 27599 USA.
[Pitts, Stephanie B. Jilcott; Whetstone, Lauren] E Carolina Univ, Elizabeth City, NC USA.
[Khan, Laura Kettel] Ctr Dis Control & Prevent, Div Nutr Phys Act & Obes, Atlanta, GA USA.
[Fleischhacker, Sheila] NIH, Div Nutr Res Coordinat, Bethesda, MD 20892 USA.
[Byker, Carmen] Montana State Univ, Billings, MT USA.
[Barnidge, Ellen] St Louis Univ, St Louis, MO 63103 USA.
[Dean, Wesley] Food & Nutr Serv, USDA, Washington, DC USA.
[Johnson, Donna; Quinn, Emilee] Univ Washington, Seattle, WA 98195 USA.
[Kolodinsky, Jane] Univ Vermont, Burlington, VT USA.
[Piltch, Emily] Tufts Univ, Boston, MA 02111 USA.
[Pinard, Courtney] Univ Nebraska, Lincoln, NE USA.
RP Calancie, L (reprint author), Univ N Carolina, Gillings Sch Global Publ Hlth, Dept Nutr, CB 7426,1700 MLK Airport Rd,Room 239, Chapel Hill, NC 27599 USA.
EM lcalancie@unc.edu
OI Byker Shanks, Carmen/0000-0002-9030-9938
FU CDC [5-37850, U48/DP000059]; National Institute of Nursing Research
[T32NR007091, 5T32NR008856]
FX This study was conducted as a joint project of the CDC-funded NOPREN
Rural Food Access Working Group (grant no. 5-37850). This work was also
supported by the CDC-funded University of North Carolina at Chapel Hill
Prevention Research Center (no. U48/DP000059). Michelle Schreiner's and
Clint Owens's work was supported by grants no. T32NR007091 and no.
5T32NR008856 from the National Institute of Nursing Research. The
findings and conclusions in this report are those of the authors and do
not necessarily represent the official position of the CDC, the USDA, or
the National Institutes of Health.
NR 60
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U1 2
U2 20
PU CENTERS DISEASE CONTROL
PI ATLANTA
PA 1600 CLIFTON RD, ATLANTA, GA 30333 USA
SN 1545-1151
J9 PREV CHRONIC DIS
JI Prev. Chronic Dis.
PD APR
PY 2015
VL 12
AR 140540
DI 10.5888/pcd12.140540
PG 16
WC Public, Environmental & Occupational Health
SC Public, Environmental & Occupational Health
GA CL0YS
UT WOS:000356669600015
ER
PT J
AU Simmons, AM
Weber, DC
Payton, ME
Hu, JS
Greenstone, MH
AF Simmons, Alvin M.
Weber, Donald C.
Payton, Mark E.
Hu, Jing S.
Greenstone, Matthew H.
TI Do Heteropterans Have Longer Molecular Prey Detectability Half-Lives
Than Other Predators? A Test With Geocoris punctipes (Heteroptera:
Geocoridae) and Orius insidiosus (Heteroptera: Anthocoridae)
SO JOURNAL OF ENTOMOLOGICAL SCIENCE
LA English
DT Article
DE biological control; Geocoris punctipes; gut-content analysis; Orius
insidiosus; predator-prey interactions
ID COLORADO POTATO BEETLE; IMMUNODOT ASSAY; APHIDS; LIFE; IDENTIFICATION;
SPIDERS; ELISA; DNA
AB Molecular gut-content analysis has revolutionized the study of predator prey interactions and yielded important insights into arthropod community processes. However, the raw data produced by most gut-content assays cannot be used to assess the relative impact of different predator taxa on prey population dynamics. They must first be weighted by the detectability half-lives for molecular prey remains for each predator prey combination. Otherwise, interpretations of predator impact will be biased toward those with the longest detectabilities. Molecular ecologists have noted taxonomic trends in the length of the half-life, in particular that they tend to be longer in spiders, staphylinids, and true bugs. We compare new data from feeding trials of two previously untested true bugs, Geocoris punctipes (Say) (Lygaeidae) and Orius insidiosus (Say) (Anthocoridae), with those from four other heteropterans and three coleopterans, in order to test the hypothesis that half-lives tend to be longer in predatory Heteroptera than in predators of other groups. At 18.4 h and 21.8 h, respectively, the new half-lives are statistically longer than those of the adult beetles, statistically indistinguishable from that of larval Coleomegilla maculata (DeGeer), and statistically shorter than three of the four previously published heteropteran half-lives. If only adults are considered, heteropterans and coleopterans are separable, but the range is still so large that there are multiple statistical differences among the half-lives, making generalization at the order level unsupportable. The hypothesis is rejected.
C1 [Simmons, Alvin M.; Weber, Donald C.; Payton, Mark E.; Hu, Jing S.; Greenstone, Matthew H.] USDA ARS, US Vegetable Lab, Charleston, SC 29414 USA.
RP Greenstone, MH (reprint author), USDA ARS, Invas Insect Biocontrol & Behav Lab, 10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM mattgreenstone@ars.usda.gov
NR 21
TC 0
Z9 0
U1 4
U2 18
PU GEORGIA ENTOMOLOGICAL SOC INC
PI TIFTON
PA PO BOX 748 DEPT ENTOMOLOGY COASTAL PLAIN EXPT STATION, TIFTON, GA
31793-0748 USA
SN 0749-8004
J9 J ENTOMOL SCI
JI J. Entomol. Sci.
PD APR
PY 2015
VL 50
IS 2
BP 99
EP 105
PG 7
WC Entomology
SC Entomology
GA CK9MJ
UT WOS:000356563900002
ER
PT J
AU Pfannenstiel, RS
AF Pfannenstiel, R. S.
TI Extended Survival of Spiders (Aranaeae) Feeding on Whitefly (Homoptera:
Aleyrodidae) Honeydew
SO JOURNAL OF ENTOMOLOGICAL SCIENCE
LA English
DT Article
DE honeydew; nonprey resources; spider
ID INCLUSUM ARANEAE MITURGIDAE; CURSORIAL SPIDER; WANDERING SPIDERS;
NECTAR; PLANT; CONSUMPTION; SALTICIDAE; EGGS
AB Honeydew produced by homopteran insects, such as aphids, whiteflies, and mealybugs, can be abundant in some crops and may represent an important food resource for spiders and other honeydew-feeding natural enemies. Woolly whiteflies (Aleurothrixus floccosus [Homoptera: Aleyrodidae]) are common in south Texas citrus, and spiders consistently compose a large percentage of the predatory arthropods in citrus and may benefit from honeydew resources. Feeding on woolly whitefly honeydew was assayed for its contribution to spider survival for five species from different arachnid families. When provided with whitefly honeydew, survival of all five species was significantly better than when provided water alone. However, the level of improvement in survival varied significantly among species. Honeydew supplementation increased survival by 73.5% for Apollophanes punctipes (Cambridge, O. P) (Philodromidae) (32.1 versus 18.5 d on water alone), 266.7% for Cesonia bilineata (Hentz) (Gnaphosidae), 352.6% for Dictyna sp. near bellans hatchi (Dictynidae), 130.9% for Thiodina sylvana (Hentz), and 1,102.5% for Hibana futilis (Banks) (Anyphaenidae) (48 versus 4 d on water alone).
C1 USDA ARS, Arthropod Borne Anim Dis Res Unit, Manhattan, KS 66502 USA.
RP Pfannenstiel, RS (reprint author), USDA ARS, Arthropod Borne Anim Dis Res Unit, 1515 Coll Ave, Manhattan, KS 66502 USA.
EM bob.pfannenstiel@ars.usda.gov
NR 28
TC 1
Z9 1
U1 1
U2 4
PU GEORGIA ENTOMOLOGICAL SOC INC
PI TIFTON
PA PO BOX 748 DEPT ENTOMOLOGY COASTAL PLAIN EXPT STATION, TIFTON, GA
31793-0748 USA
SN 0749-8004
J9 J ENTOMOL SCI
JI J. Entomol. Sci.
PD APR
PY 2015
VL 50
IS 2
BP 110
EP 118
PG 9
WC Entomology
SC Entomology
GA CK9MJ
UT WOS:000356563900004
ER
PT J
AU Feldlaufer, MF
Ulrich, KR
AF Feldlaufer, Mark F.
Ulrich, Kevin R.
TI Essential Oils as Fumigants for Bed Bugs (Hemiptera: Cimicidae)
SO JOURNAL OF ENTOMOLOGICAL SCIENCE
LA English
DT Article
DE bed bug; Cimex lectularius; essential oils; fumigation
ID PEST
AB Certain plant-derived essential oils are classified as 'minimum risk' pesticides that require no registration with the Environmental Protection Agency and, therefore, have become attractive in formulations of pest-control products. In Petri dish assays, fumigation of a pyrethroid-susceptible strain of bed bugs, Cimex lectularius L. (Hemiptera: Cimicidae), with various essential oils results in mortality that approaches or equals 100% after 5 d. However, when bed bugs were exposed to the same essential oils in sealed, commercial trash bags for 5 d, only rosemary oil killed greater than 99% of the bed bugs. These results are compared with a commercial product that contains cold-pressed neem oil that killed 100% of the exposed bed bugs in both the Petri dish and trash bag studies.
C1 [Feldlaufer, Mark F.; Ulrich, Kevin R.] USDA ARS, Invas Insect Biocontrol & Behav Lab, Beltsville, MD 20705 USA.
RP Feldlaufer, MF (reprint author), BARC East, Bldg 1040, Beltsville, MD 20705 USA.
EM mark.feldlaufer@ars.usda.gov
NR 26
TC 0
Z9 1
U1 4
U2 17
PU GEORGIA ENTOMOLOGICAL SOC INC
PI TIFTON
PA PO BOX 748 DEPT ENTOMOLOGY COASTAL PLAIN EXPT STATION, TIFTON, GA
31793-0748 USA
SN 0749-8004
J9 J ENTOMOL SCI
JI J. Entomol. Sci.
PD APR
PY 2015
VL 50
IS 2
BP 129
EP 137
PG 9
WC Entomology
SC Entomology
GA CK9MJ
UT WOS:000356563900006
ER
PT J
AU Mahmood, R
Jones, WA
Bajwa, BE
Rashid, K
AF Mahmood, Riaz
Jones, Walker A.
Bajwa, Babar E.
Rashid, Khalid
TI Egg Parasitoids from Pakistan as Possible Classical Biological Control
Agents of the Invasive Pest Bagrada hilaris (Heteroptera: Pentatomidae)
SO JOURNAL OF ENTOMOLOGICAL SCIENCE
LA English
DT Editorial Material
DE biological control; egg parasitoid; sentinel eggs; habitat preference;
Pentatomidae
C1 [Mahmood, Riaz; Jones, Walker A.; Bajwa, Babar E.; Rashid, Khalid] Commonwealth Agr Bur Int, Satellite Town, Rawalpindi, Pakistan.
RP Jones, WA (reprint author), USDA ARS, Biol Control Pests Res Unit, Natl Biol Control Lab, Stoneville, MS 38776 USA.
EM walker.jones@ars.usda.gov
NR 0
TC 1
Z9 1
U1 2
U2 13
PU GEORGIA ENTOMOLOGICAL SOC INC
PI TIFTON
PA PO BOX 748 DEPT ENTOMOLOGY COASTAL PLAIN EXPT STATION, TIFTON, GA
31793-0748 USA
SN 0749-8004
J9 J ENTOMOL SCI
JI J. Entomol. Sci.
PD APR
PY 2015
VL 50
IS 2
BP 147
EP 149
PG 3
WC Entomology
SC Entomology
GA CK9MJ
UT WOS:000356563900008
ER
PT J
AU McMahan, C
Lhamo, D
AF McMahan, Colleen
Lhamo, Dhondup
TI STUDY OF AMINO ACID MODIFIERS IN GUAYULE NATURAL RUBBER
SO RUBBER CHEMISTRY AND TECHNOLOGY
LA English
DT Article
ID INDUCED CRYSTALLIZATION; LATEX; DEGRADATION; PROTEINS; HEVEA
AB Guayule, a desert shrub indigenous to the United States, is under development as a source of natural rubber that can be used in place of petroleum-based rubber or Hevea rubber. In natural rubbers, physical and chemical properties can be strongly affected by nonrubber constituents, typically proteins and lipids, present in the material, depending on the plant species and postharvest processing. Hevea natural rubber typically contains high levels of nonrubber constituents that contribute to thermal-oxidative stability, cure acceleration, and especially strain-induced crystallization. The latter has been attributed to compound properties that render Hevea natural rubber uniquely suited for the most demanding rubber applications (e.g., aircraft tires). Hevea proteins are susceptible to hydrolysis, releasing free amino acids into the latex, which can affect rubber and compound properties. Here, low-protein guayule latex was blended with a series of amino acids varying in chemical structure. Bulk viscosity was reduced, thermal-oxidative stability was improved, and cure rate was influenced by the addition of amino acids. Generally, gel formation, green strength, and tensile strength were not affected. The results introduce a new perspective for amino acids as biobased rubber compound additives and provide insights into naturally occurring nonrubber constituents' interaction with natural rubber polymers.
C1 [McMahan, Colleen; Lhamo, Dhondup] USDA ARS, Western Reg Res Lab, Albany, CA 94710 USA.
RP McMahan, C (reprint author), USDA ARS, Western Reg Res Lab, Albany, CA 94710 USA.
EM colleen.mcmahan@ars.usda.gov
NR 29
TC 0
Z9 0
U1 1
U2 2
PU AMER CHEMICAL SOC INC
PI AKRON
PA RUBBER DIV UNIV AKRON PO BOX 499, AKRON, OH 44309-0499 USA
SN 0035-9475
EI 1943-4804
J9 RUBBER CHEM TECHNOL
JI Rubber Chem. Technol.
PD APR-JUN
PY 2015
VL 88
IS 2
BP 310
EP 323
DI 10.5254/rct.15.85931
PG 14
WC Polymer Science
SC Polymer Science
GA CK3PN
UT WOS:000356128100008
ER
PT J
AU Buffington, ML
Azevedo, CO
AF Buffington, Matthew L.
Azevedo, Celso O.
TI THE REDESCRIPTION AND PHYLOGENETIC POSITION OF STELEUCOELA KIEFFER,
1908, A REMARKABLE GENUS OF NEOTROPICAL GANASPINI (HYMENOPTERA:
FIGITIDAE: EUCOILINAE)
SO PROCEEDINGS OF THE ENTOMOLOGICAL SOCIETY OF WASHINGTON
LA English
DT Article
DE parasitoid; morphology; biodiversity; Espirito Santo; Atlantic primary
forest
ID ATLANTIC FOREST; CYNIPOIDEA
AB The eucoiline genus Steleucoela Kieffer is redescribed and illustrated, as well as the two species S. brasiliensis Diaz and S. piriformis Kieffer. Updated distribution data are provided, and include the new country records from Colombia and Costa Rica for S. piriformis. DNA sequence data are here combined with a morphological phylogenetic matrix to examine the phylogenetic placement of Stelecuoela. While morphologically rather apomorphic, Stelecuoela was recovered nested within Ganaspini. This study is a product of the NESH Project of Espirito Santo, and we discuss the future of Hymenoptera taxonomy within the state.
C1 [Buffington, Matthew L.] USDA, Systemat Entomol Lab, Smithsonian NMNH, Washington, DC 20013 USA.
[Azevedo, Celso O.] Univ Fed Espirito Santo, Dept Ciencias Biol, BR-29075910 Vitoria, ES, Brazil.
RP Buffington, ML (reprint author), USDA, Systemat Entomol Lab, Smithsonian NMNH, 10th & Constitution Ave NW, Washington, DC 20013 USA.
EM matt.buffington@ars.usda.gov; bethylidae@gmail.com
RI Azevedo, Celso/D-1295-2014
FU CNPq/FAPES [52263010/2011]; CNPq [301669/2010-4]; Systematic Entomology
Laboratory
FX COA recognizes CNPq/FAPES grant #52263010/2011 for the financial aid
from N.E.S.H, and CNPq grant #301669/2010-4 for his fellowship. MLB
thanks the Systematic Entomology Laboratory for support and funding;
Dylan Johnston-Jordan (SI intern) for images of S. piriformis; Taina
Litwak (Systematic Entomology Lab) for rendering the digital
illustration in Figure 1 of S. brasiliensis, and assisting with the
editing the SEM images of S. brasiliensis. Additional thanks are given
to Robert Zuparko (CASC) and Andrew Bennett (CNCI) for specimen loans
critical to this project; to John Noyes (NHM) for fruitful discussions
on Costa Rican habitat characteristics. Mattias Forshage (Natural
History Museum of Stockholm) and Thomas Henry (Systematic Entomology
Lab) significantly improved this manuscript. Mention of trade names or
commercial products in this publication is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the USDA. The USDA is an equal opportunity provider and
employer.
NR 16
TC 0
Z9 0
U1 0
U2 2
PU ENTOMOL SOC WASHINGTON
PI WASHINGTON
PA SMITHSONIAN INSTITUTION DEPT ENTOMOLOGY, WASHINGTON, DC 20560 USA
SN 0013-8797
J9 P ENTOMOL SOC WASH
JI Proc. Entomol. Soc. Wash.
PD APR
PY 2015
VL 117
IS 2
BP 95
EP 115
DI 10.4289/0013-8797.117.2.95
PG 21
WC Entomology
SC Entomology
GA CK4AC
UT WOS:000356158100002
ER
PT J
AU Bukejs, A
Chamorro, ML
AF Bukejs, Andris
Chamorro, Maria Lourdes
TI TWO NEW FOSSIL SPECIES OF CRYPTOCEPHALUS GEOFFROY (COLEOPTERA:
CHRYSOMELIDAE) FROM BALTIC AND DOMINICAN AMBER
SO PROCEEDINGS OF THE ENTOMOLOGICAL SOCIETY OF WASHINGTON
LA English
DT Article
DE leaf-beetles; Cryptocephalinae; new taxa; fossil resin
ID CALIBRATION UNCERTAINTY; EVOLUTION; ORIGIN
AB Two new species of Cryptocephalus Geoffroy (Coleoptera: Chrysomelidae) are described and illustrated from fossil resin: Cryptocephalus groehni sp. nov. (Baltic amber) and Cryptocephalus kheelorum sp. nov. (Dominican amber). These are the first described species of Cryptocephalinae from fossil resin. These new fossil species may serve with taxonomic certainty as calibration points in divergence dating estimates.
C1 [Bukejs, Andris] Daugavpils Univ, Inst Life Sci & Technol, LV-5401 Daugavpils, Latvia.
[Chamorro, Maria Lourdes] USDA ARS, Natl Museum Nat Hist, Smithsonian Inst, Systemat Entomol Lab, Washington, DC 20013 USA.
RP Bukejs, A (reprint author), Daugavpils Univ, Inst Life Sci & Technol, Vienibas 13, LV-5401 Daugavpils, Latvia.
EM carabidae@inbox.lv; lourdes.chamorro@ars.usda.gov
NR 29
TC 4
Z9 4
U1 1
U2 2
PU ENTOMOL SOC WASHINGTON
PI WASHINGTON
PA SMITHSONIAN INSTITUTION DEPT ENTOMOLOGY, WASHINGTON, DC 20560 USA
SN 0013-8797
J9 P ENTOMOL SOC WASH
JI Proc. Entomol. Soc. Wash.
PD APR
PY 2015
VL 117
IS 2
BP 116
EP 125
DI 10.4289/0013-8797.117.2.116
PG 10
WC Entomology
SC Entomology
GA CK4AC
UT WOS:000356158100003
ER
PT J
AU Henry, TJ
Sweet, MH
AF Henry, Thomas J.
Sweet, Merrill H.
TI WHEELERODEMUS MUHLENBERGIAE, A NEW GENUS AND NEW SPECIES OF BLISSIDAE
(HEMIPTERA: HETEROPTERA: LYGAEOIDEA) FROM OKLAHOMA AND TEXAS
SO PROCEEDINGS OF THE ENTOMOLOGICAL SOCIETY OF WASHINGTON
LA English
DT Article
DE Insecta; Hemiptera; Lygaeoidea; Blissidae; new genus and species; hosts;
distribution; key
ID BLISSUS HETEROPTERA; CHINCH BUG; LYGAEIDAE; AMERICA
AB The new blissid genus Wheelerodemus is described to accommodate the new species W. muhlenbergiae, based on specimens collected on the grasses Muhlenbergia lindheimeri and M. reverchonii from the Arbuckle Mountains in southcentral Oklahoma and the Edward's Plateau in westcentral Texas. Because the size of specimens from Oklahoma appeared consistently smaller than those from Texas, samples from each area were sequenced using the COI barcode region to help determine that only one variable species was involved. Diagnoses, descriptions, a color habitus illustration of the adult male, dorsal and lateral photographs of the adult male and female, photomicrographs of selected structures, illustrations of male and female genitalia, and a key to the U.S. blissid genera are provided to help distinguish this new genus and species from other Blissidae.
C1 [Henry, Thomas J.] USDA ARS, Systemat Entomol Lab, PSI, Natl Mus Nat Hist,Smithsonian Inst, Washington, DC 20013 USA.
[Sweet, Merrill H.] New Mexico State Univ, Dept Entomol Plant Pathol & Weed Sci, Las Cruces, NM 88003 USA.
RP Henry, TJ (reprint author), USDA ARS, Systemat Entomol Lab, PSI, Natl Mus Nat Hist,Smithsonian Inst, POB 37012,MRC-0168, Washington, DC 20013 USA.
EM thomas.henry@ars.usda.gov
NR 19
TC 1
Z9 1
U1 0
U2 0
PU ENTOMOL SOC WASHINGTON
PI WASHINGTON
PA SMITHSONIAN INSTITUTION DEPT ENTOMOLOGY, WASHINGTON, DC 20560 USA
SN 0013-8797
J9 P ENTOMOL SOC WASH
JI Proc. Entomol. Soc. Wash.
PD APR
PY 2015
VL 117
IS 2
BP 151
EP 161
DI 10.4289/0013-8797.117.2.151
PG 11
WC Entomology
SC Entomology
GA CK4AC
UT WOS:000356158100006
ER
PT J
AU Monjaras-Barrera, JI
Morales-Reyes, C
Smith, DR
AF Monjaras-Barrera, Jose Irving
Morales-Reyes, Celso
Smith, David R.
TI A NEW SPECIES OF SPHACOPHILUS (HYMENOPTERA: ARGIDAE) FROM MEXICO FEEDING
ON CHIPILIN, CROTALARIA LONGIROSTRATA (FABACEAE)
SO PROCEEDINGS OF THE ENTOMOLOGICAL SOCIETY OF WASHINGTON
LA English
DT Article
DE sawfly; Symphyta; agricultural pest
AB Sphacophilus monjarasi Smith and Morales-Reyes, n. sp., is described from Chiapas, Mexico. Larvae feed on chipilin, Crotalaria longirostrata Hook. & Am. (Fabaceae), an agricultural crop in Mexico and Central America.
C1 Univ Autonoma Agr Antonio Narro, Dept Parasitol, Saltillo 25315, Coahuila, Mexico.
[Smith, David R.] USDA ARS, Systemat Entomol Lab, Natl Museum Nat Hist, Smithsonian Inst, Washington, DC 20013 USA.
RP Monjaras-Barrera, JI (reprint author), Univ Autonoma Agr Antonio Narro, Dept Parasitol, Calzada Antonio Narro 1923 Col Buenavista, Saltillo 25315, Coahuila, Mexico.
EM irving_032@hotmail.com; vardenhevrer@hotmail.com; sawfly2@aol.com
NR 6
TC 1
Z9 1
U1 0
U2 3
PU ENTOMOL SOC WASHINGTON
PI WASHINGTON
PA SMITHSONIAN INSTITUTION DEPT ENTOMOLOGY, WASHINGTON, DC 20560 USA
SN 0013-8797
J9 P ENTOMOL SOC WASH
JI Proc. Entomol. Soc. Wash.
PD APR
PY 2015
VL 117
IS 2
BP 179
EP 182
DI 10.4289/0013-8797.117.2.179
PG 4
WC Entomology
SC Entomology
GA CK4AC
UT WOS:000356158100008
ER
PT J
AU Smith, DR
Wei, MC
AF Smith, David R.
Wei, Meicai
TI A NEW ASIAN MONOPHADNOIDES ASHMEAD (HYMENOPTERA: TENTHREDINIDAE) WITH
HIGH ANTENNAL CRESTS
SO PROCEEDINGS OF THE ENTOMOLOGICAL SOCIETY OF WASHINGTON
LA English
DT Article
DE Blennocampinae; Palearctic
AB Monophadnoides tuberculatus Smith and Wei, n. sp., is described from China and Korea. The unusual high antennal crests are diagnostic for the species.
C1 [Smith, David R.] ARS, Systemat Entomol Lab, USDA, Natl Museum Nat Hist,Smithsonian Inst, Washington, DC 20560 USA.
[Wei, Meicai] Cent South Univ Forestry & Technol, Minist Educ, Key Lab Cultivat & Protect Nonwood Forest Trees, Changsha 410004, Hunan, Peoples R China.
RP Smith, DR (reprint author), ARS, Systemat Entomol Lab, USDA, Natl Museum Nat Hist,Smithsonian Inst, POB 37012,MRC 168, Washington, DC 20560 USA.
EM sawfly2@aol.com; weimc@126.com
NR 5
TC 0
Z9 0
U1 3
U2 5
PU ENTOMOL SOC WASHINGTON
PI WASHINGTON
PA SMITHSONIAN INSTITUTION DEPT ENTOMOLOGY, WASHINGTON, DC 20560 USA
SN 0013-8797
J9 P ENTOMOL SOC WASH
JI Proc. Entomol. Soc. Wash.
PD APR
PY 2015
VL 117
IS 2
BP 203
EP 208
DI 10.4289/0013-8797.117.2.203
PG 6
WC Entomology
SC Entomology
GA CK4AC
UT WOS:000356158100011
ER
PT J
AU Larcenaire, CJ
Tomon, TJ
Turcotte, RM
Burton, KE
AF Larcenaire, Craig J.
Tomon, Timothy J.
Turcotte, Richard M.
Burton, Kandace E.
TI A new host and a new state record for Paralobesia piceana (Freeman)
(Lepidoptera: Tortricidae) on eastern hemlock in West Virginia
SO PROCEEDINGS OF THE ENTOMOLOGICAL SOCIETY OF WASHINGTON
LA English
DT Editorial Material
ID NEW-ENGLAND; PATTERNS; DECLINE
C1 [Larcenaire, Craig J.; Turcotte, Richard M.; Burton, Kandace E.] US Forest Serv, USDA, Morgantown, WV 26505 USA.
[Tomon, Timothy J.] Penn Bur Forestry, Div Forest Pest Management, Penfield, PA 15849 USA.
RP Larcenaire, CJ (reprint author), US Forest Serv, USDA, 180 Canfield St, Morgantown, WV 26505 USA.
EM rturcotte@fs.fed.us
NR 14
TC 0
Z9 0
U1 4
U2 4
PU ENTOMOL SOC WASHINGTON
PI WASHINGTON
PA SMITHSONIAN INSTITUTION DEPT ENTOMOLOGY, WASHINGTON, DC 20560 USA
SN 0013-8797
J9 P ENTOMOL SOC WASH
JI Proc. Entomol. Soc. Wash.
PD APR
PY 2015
VL 117
IS 2
BP 244
EP 246
DI 10.4289/0013-8797.117.2.244
PG 3
WC Entomology
SC Entomology
GA CK4AC
UT WOS:000356158100015
ER
PT J
AU Garvie, LAJ
Wilkens, B
Groy, TL
Glaeser, JA
AF Garvie, Laurence A. J.
Wilkens, Barry
Groy, Thomas L.
Glaeser, Jessie A.
TI Substantial production of drosophilin A methyl ether
(tetrachloro-1,4-dimethoxybenzene) by the lignicolous basidiomycete
Phellinus badius in the heartwood of mesquite (Prosopis juliflora) trees
SO SCIENCE OF NATURE
LA English
DT Article
DE DAME; Phellinus badius; Prosopis juliflora; Chlorinated hydroquinone
metabolites; Drosophilins; Organohalogen pollutants
ID WEATHERING PLANT-MATERIAL; ORGANOHALOGEN PRODUCTION; FUNGI;
BIOSYNTHESIS; CHLORINE; LIGNIN; WOOD; IDENTIFICATION; TRANSFORMATION;
ENVIRONMENTS
AB Toxic organohalogen pollutants produced as by-products of industrial processes, such as chloroform and polychlorinated dibenzo-p-dioxins, also have significant natural sources. A substantial terrestrial source of halogenated organics originates from fungal decay of wood and leaf litter. Here we show that the lignicolous basidiomycete Phellinus badius deposits up to 30,000 mg of the halogenated metabolite drosophilin A methyl ether (DAME, tetrachloro-1,4-dimethoxybenzene) per kilogram of decayed heartwood in the mesquite Prosopis juliflora. DAME occurs as clusters of glassy crystals up to 1 mm long within the decayed heartwood. In addition, the Phellinus badius basidiocarps contain an average of 24,000 mg DAME/kg dried fruiting body, testifying to the significant translocation and accumulation of Cl accompanied by DAME biosynthesis. The high DAME concentrations attest to the substantial Cl content of the heartwood, which averages near 5,000 ppm, with Cl/K near 1:1, consistent with an inorganic chloride precursor. Phellinus badius has a circumglobal distribution in the tropics and subtropics, where it is widely distributed on hardwoods and commonly associated with decay of mesquite. There is the potential for extensive DAME formation within decayed heartwood worldwide given the extensive range of Phellinus badius and its propensity to form DAME within mesquites. Further, DAME production is not limited to Phellinus badius but occurs in a range of lignicolous basidiomycetes, suggesting a significant natural reservoir for this chloroaromatic with potential environmental implications.
C1 [Garvie, Laurence A. J.] Arizona State Univ, Sch Earth & Space Explorat, Tempe, AZ 85287 USA.
[Wilkens, Barry] Arizona State Univ, LeRoy Eyring Ctr Solid State Sci, Tempe, AZ 85287 USA.
[Groy, Thomas L.] Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA.
[Glaeser, Jessie A.] US Forest Serv, Forest Prod Lab, Ctr Forest Mycol, Madison, WI 53726 USA.
RP Garvie, LAJ (reprint author), Arizona State Univ, Sch Earth & Space Explorat, 781 East Terrace Rd, Tempe, AZ 85287 USA.
EM lgarvie@asu.edu
NR 43
TC 0
Z9 0
U1 1
U2 5
PU SPRINGER HEIDELBERG
PI HEIDELBERG
PA TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY
SN 0028-1042
EI 1432-1904
J9 SCI NAT-HEIDELBERG
JI Sci. Nat.
PD APR
PY 2015
VL 102
IS 3-4
AR 18
DI 10.1007/s00114-015-1268-5
PG 8
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CK1CE
UT WOS:000355942200006
ER
PT J
AU Pecenka, JR
Lundgren, JG
AF Pecenka, Jacob R.
Lundgren, Jonathan G.
TI Non-target effects of clothianidin on monarch butterflies
SO SCIENCE OF NATURE
LA English
DT Article
DE Asclepias; Danaus plexippus; Neonicotinoid; Non-target; Seed treatment
ID LARVAE; CORN; MIGRATION; POLLEN
AB Monarch butterflies (Danaus plexippus) frequently consume milkweed in and near agroecosystems and consequently may be exposed to pesticides like neonicotinoids. We conducted a dose response study to determine lethal and sublethal doses of clothianidin using a 36-h exposure scenario. We then quantified clothianidin levels found in milkweed leaves adjacent to maize fields. Toxicity assays revealed LC10, LC50, and LC90 values of 7.72, 15.63, and 30.70 ppb, respectively. Sublethal effects (larval size) were observed at 1 ppb. Contaminated milkweed plants had an average of 1.14 +/- 0.10 ppb clothianidin, with a maximum of 4 ppb in a single plant. This research suggests that clothianidin could function as a stressor to monarch populations.
C1 [Pecenka, Jacob R.] S Dakota State Univ, Nat Resource Management, Brookings, SD 57007 USA.
[Lundgren, Jonathan G.] ARS, USDA, North Cent Agr Res Lab, Brookings, SD 57006 USA.
RP Lundgren, JG (reprint author), ARS, USDA, North Cent Agr Res Lab, 2923 Medary Ave, Brookings, SD 57006 USA.
EM Jonathan.Lundgren@ars.usda.gov
NR 16
TC 4
Z9 5
U1 5
U2 56
PU SPRINGER HEIDELBERG
PI HEIDELBERG
PA TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY
SN 0028-1042
EI 1432-1904
J9 SCI NAT-HEIDELBERG
JI Sci. Nat.
PD APR
PY 2015
VL 102
IS 3-4
AR 19
DI 10.1007/s00114-015-1270-y
PG 4
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CK1CE
UT WOS:000355942200007
ER
PT J
AU Ammar, ED
Hall, DG
Alvarez, JM
AF Ammar, El-Desouky
Hall, David G.
Alvarez, Juan M.
TI Effect of Cyantraniliprole, a Novel Insecticide, on the Inoculation of
Candidatus Liberibacter Asiaticus Associated with Citrus Huanglongbing
by the Asian Citrus Psyllid (Hemiptera: Liviidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE Diaphorina citri; Exirel; Cyazypyr; fenpropathrin; citrus greening
ID ANTHRANILIC DIAMIDE INSECTICIDE; REAL-TIME PCR; DETERMINE REDUCTION;
DIAPHORINA-CITRI; DISEASE; MANAGEMENT; TRANSMISSION; BEHAVIOR; TOMATO
AB The Asian citrus psyllid (Diaphorina citri Kuwayama) is the principal vector of 'Candidatus Liberibacter asiaticus' (CLas) associated with huanglongbing (HLB), the most serious citrus disease worldwide. New control measures including pesticides are urgently needed to combat HLB, especially to protect young or newly planted citrus trees from CLas-inoculation by vector psyllids. Here, we tested CLas-inoculation by D. citri adults (CLas-exposed, reared on infected plants) by feeding them for 7 d on excised healthy citrus leaves with dry residues of cyantraniliprole (Exirel), a novel insecticide, in comparison with fenpropathrin (Danitol 2.4EC), an insecticide commonly used against D. citri. Fewer adults settled (putatively feeding or probing) on leaves treated with cyantraniliprole than those treated with fenpropathrin or water controls. Also, psyllid adults died at a slower rate on leaves treated with cyantraniliprole than those treated with fenpropathrin, although the final cumulative mortality did not differ between the two treatments. In quantitative real-time polymerase chain reaction tests, 59.0-65.3% of the CLas-exposed psyllid adults were proven to be CLas-positive. Inoculation rates of CLas (using 10 adults per leaf) into untreated healthy citrus leaves (47.5-85%) were significantly higher than rates into leaves treated with cyantraniliprole or fenpropathrin (2.5-12.5%). Reduced inoculation rates to leaves treated with cyantraniliprole probably occurred as a result of reduced feeding or probing by D. citri. The excised leaf assay method, which took only a few weeks compared with up to a year or longer using whole plants, can be an effective tool for testing the effect of new pesticides or other treatments in reducing CLas inoculation or transmission by psyllid vectors.
C1 [Ammar, El-Desouky; Hall, David G.] USDA ARS, Ft Pierce, FL 34945 USA.
[Alvarez, Juan M.] DuPont Crop Protect, Newark, DE 19711 USA.
RP Hall, DG (reprint author), USDA ARS, Ft Pierce, FL 34945 USA.
EM david.hall@ars.usda.gov
NR 30
TC 5
Z9 5
U1 1
U2 13
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 399
EP 404
DI 10.1093/jee/tov016
PG 6
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600004
PM 26470150
ER
PT J
AU Goble, TA
Hajek, AE
Jackson, MA
Gardescu, S
AF Goble, Tarryn A.
Hajek, Ann E.
Jackson, Mark A.
Gardescu, Sana
TI Microsclerotia of Metarhizium brunneum F52 Applied in Hydromulch for
Control of Asian Longhorned Beetles (Coleoptera: Cerambycidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE biological control; Anoplophora glabripennis; entomopathogenic fungus;
bioassay; spraying
ID ANOPLOPHORA-GLABRIPENNIS COLEOPTERA; PAECILOMYCES-FARINOSUS;
BEAUVERIA-BASSIANA; ANISOPLIAE; TEMPERATURE; HUMIDITY; WATER; SOIL;
FERMENTATION; GERMINATION
AB The entomopathogenic fungus Metarhizium brunneum (Petch) strain F52 ( Hypocreales: Clavicipitaceae) is able to produce environmentally persistent microsclerotia (hyphal aggregates). Microsclerotia of strain F52 produced as granules and incorporated into hydromulch (hydro-seeding straw, water, and a natural glue) provides a novel mycoinsecticide that could be sprayed onto urban, forest, or orchard trees. We tested this formulation against adult Asian longhorned beetles (Anoplophora glabripennis (Motschulsky)) using three substrates (moistened bark, dry bark, absorbent bench liner) sprayed with a low rate (9 microsclerotia granules/cm(2)) of hydromulch. Median survival times of beetles continuously exposed to sprayed moist bark or absorbent liner were 17.5 and 19.5 d, respectively. Beetles exposed to sprayed dry bark, which had a lower measured water activity, lived significantly longer. When moist bark pieces were sprayed with increased rates of microsclerotia granules in hydromulch, 50% died by 12.5 d at the highest application rate, significantly sooner than beetles exposed to lower application rates (16.5-17.5 d). To measure fecundity effects, hydromulch with or without microsclerotia was sprayed onto small logs and pairs of beetles were exposed for a 2-wk oviposition period in containers with 98 or 66% relative humidity. At 98% humidity, oviposition in the logs was highest for controls (18.36 +/- 1.4 viable offspring per female) versus 3.9 +/- 0.8 for beetles exposed to microsclerotia. At 66% humidity, fecundities of controls and beetles exposed to microsclerotia were not significantly different. This article presents the first evaluation of M. brunneum microsclerotia in hydromulch applied for control of an arboreal insect pest.
C1 [Goble, Tarryn A.; Hajek, Ann E.; Gardescu, Sana] Cornell Univ, Dept Entomol, Ithaca, NY 14853 USA.
[Jackson, Mark A.] USDA ARS NCAUR, Crop Bioprotect Res Unit, Peoria, IL 61604 USA.
RP Goble, TA (reprint author), Cornell Univ, Dept Entomol, Ithaca, NY 14853 USA.
EM tazgoble@gmail.com
FU Litwin Foundation
FX We would like to thank our laboratory assistants and technicians,
especially Meghan Roblee, Jake Henry, Keith Shane, and Cyrus Moradi. A
very special thank you goes to Jeff Gardner for assisting in the
development of the spray applications. Thanks to Ed Lee for providing
hydromulch and technical support, Steve Vaughn for grinding and
preparing the hydromulch fractions, Cole Gilbert for stripping his
entire property devoid of bark for our use in this study, and the
reviewers for their helpful comments. Finally, we thank the Alphawood
Foundation for their support of the beetle colony and the Litwin
Foundation for research support.
NR 32
TC 4
Z9 4
U1 2
U2 19
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 433
EP 443
DI 10.1093/jee/tov013
PG 11
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600008
PM 26470154
ER
PT J
AU Jalinas, J
Guerri-Agullo, B
Mankin, RW
Lopez-Follana, R
Lopez-Llorca, LV
AF Jalinas, Johari
Gueerri-Agullo, Berenice
Mankin, R. W.
Lopez-Follana, R.
Lopez-Llorca, L. V.
TI Acoustic Assessment of Beauveria bassiana (Hypocreales: Clavicipitaceae)
Effects on Rhynchophorus ferrugineus (Coleoptera: Dryophthoridae) Larval
Activity and Mortality
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE detection; entomopathogenic fungi; biological control
ID RED PALM WEEVIL; METARHIZIUM-ANISOPLIAE; BIOACOUSTIC SENSOR; SOLID
FORMULATION; FIELD CONDITIONS; CURCULIONIDAE; PATTERNS; FEATURES;
OLIVIER
AB Rhynchophorus ferrugineus (Olivier) (Coleoptera: Dryophthoridae) is an economically important pest of palm trees in the subtropics. Beauveria bassiana (Balsamo-Crivelli) Vuillemin (Hypocreales: Clavicipitaceae), has been shown to be pathogenic against R. ferrugineus in laboratory and field studies. However, because they remain inside the trunks until adulthood, the slowing of feeding and increases in mortality of internally feeding R. ferrugineus larvae over time after B. bassiana treatment has not been established. To explore the potential of acoustic methods to assess treatment effects, sound impulses produced by untreated, 10(4)-, and 10(6)- conidia ml(-1) B. bassiana-treated larvae in palms were recorded for 23 d, after which the palms were dissected and the larvae examined. Analyses were performed to identify trains of impulses with characteristic patterns (bursts) produced frequently by moving and feeding larvae but only rarely (3-8% of the larval rate) by interfering background noise or tree vibrations. The rates of bursts, the counts of larval impulses per burst, and the rates of impulses in bursts decreased significantly over time in both B. bassiana treatments but not in the control. This supports a hypothesis that larvae had briefer movement and feeding bouts as they became weaker after infection, which reduced the counts of larval impulses per burst, the rates of bursts, and the rates of impulses in bursts. There is considerable potential for use of acoustic methods as tools for nondestructive assessment of effects of biological control treatments against internally feeding insect pests.
C1 [Jalinas, Johari; Gueerri-Agullo, Berenice; Lopez-Follana, R.; Lopez-Llorca, L. V.] Univ Alicante, Multidisciplinary Inst Environm Studies MIES Ramo, Plant Pathol Lab, Dept Marine Sci & Appl Biol, E-03080 Alicante, Spain.
[Jalinas, Johari] Univ Kebangsaan Malaysia, Fac Sci, Sch Environm & Nat Resource Sci, Bangi 43600, Malaysia.
[Gueerri-Agullo, Berenice; Lopez-Follana, R.; Lopez-Llorca, L. V.] Colegio Mayor Univ, Glen Biotech, Alicante 03080, Spain.
[Mankin, R. W.] ARS, USDA, Ctr Med Agr & Vet Entomol, Gainesville, FL 32608 USA.
RP Mankin, RW (reprint author), ARS, USDA, Ctr Med Agr & Vet Entomol, Gainesville, FL 32608 USA.
EM Richard.Mankin@ars.usda.gov
FU Glen Biotech SL. Co.; Spanish Ministry of Science and Innovation
[AGL2011-29297]; Universiti Kebangsaan Malaysia; Malaysia Ministry of
Education
FX This research was supported in part by the Glen Biotech SL. Co., the
Spanish Ministry of Science and Innovation AGL2011-29297 project, the
Universiti Kebangsaan Malaysia, and the Malaysia Ministry of Education.
The use of trade, firm, or corporation names in this publication does
not constitute an official endorsement or approval by the U.S.
Department of Agriculture, Agricultural Research Service of any product
or service to the exclusion of others that may be suitable. The USDA is
an equal opportunity provider and employer.
NR 28
TC 2
Z9 2
U1 1
U2 5
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 444
EP 453
DI 10.1093/jee/tov023
PG 10
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600009
PM 26470155
ER
PT J
AU Zou, DY
Coudron, TA
Wu, HH
Gu, XS
Xu, WH
Zhang, LS
Chen, HY
AF Zou, D. Y.
Coudron, T. A.
Wu, H. H.
Gu, X. S.
Xu, W. H.
Zhang, L. S.
Chen, H. Y.
TI Performance and Cost Comparisons for Continuous Rearing of Arma
chinensis (Hemiptera: Pentatomidae: Asopinae) on a Zoophytogenous
Artificial Diet and a Secondary Prey
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE beneficial insect; Arma chinensis; performance; cost efficiency;
artificial diet
ID PERILLUS-BIOCULATUS HETEROPTERA; LIFE TABLE PARAMETERS;
PODISUS-MACULIVENTRIS; HISTORY
AB The impact of a zoophytogenous, insect-free artificial diet and a secondary prey, pupae of Chinese oak silk moth Antheraea pernyi (Guerin-Meneville) (Lepidoptera: Saturniidae), on the developmental rate, life history parameters, and fertility was examined for F6, F9, and F12 consecutive generations for domesticated Arma chinensis (Fallou) (Heteroptera: Pentatomidae). This study showed that when fed an insect-free artificial diet during both the nymphal and adult stages, developmental times were prolonged, and fecundity, egg viability, net reproductive rates (R-0), and intrinsic rates of increase (r(m)) declined. As a result, the cost to rear A. chinensis on the artificial diet approached 2.0 times the cost of rearing A. chinensis on pupae of A. pernyi. Future diet improvements should attempt to reduce developmental time, increase fecundity, and egg viability and use less costly nutrient sources.
C1 [Zou, D. Y.; Gu, X. S.; Xu, W. H.] Tianjin Inst Plant Protect, Insect Pest Control Lab, Tianjin 300381, Peoples R China.
[Zou, D. Y.; Zhang, L. S.; Chen, H. Y.] Chinese Acad Agr Sci, Inst Plant Protect, Minist Agr, Key Lab Integrated Pest Management Crops, Beijing 100081, Peoples R China.
[Zou, D. Y.; Zhang, L. S.; Chen, H. Y.] USDA ARS, Sino Amer Biol Control Lab, Beijing 100081, Peoples R China.
[Coudron, T. A.] USDA ARS, Biol Control Insects Res Lab, Columbia, MO 65203 USA.
[Wu, H. H.] Tianjin Agr Univ, Agr Anal & Test Ctr, Tianjin 300384, Peoples R China.
RP Zou, DY (reprint author), Tianjin Inst Plant Protect, Insect Pest Control Lab, Tianjin 300381, Peoples R China.
EM zdyqiuzhen@126.com
FU National Natural Science Foundation of China [31401806]; Special Fund
for Agro-scientific Research in the Public Interest [201103002];
Sino-America Biocontrol International Cooperation Program
[58-4001-4-053]
FX We acknowledge and thank G. Y. Guo of Institute of Plant Protection,
Chinese Academy of Agricultural Sciences, Beijing, China, for her
support in this study. We also extend our thanks to all reviewers for
their useful comments. This research was partly supported by National
Natural Science Foundation of China (31401806), Special Fund for
Agro-scientific Research in the Public Interest (201103002), and
Sino-America Biocontrol International Cooperation Program
(58-4001-4-053).
NR 26
TC 4
Z9 5
U1 6
U2 18
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 454
EP 461
DI 10.1093/jee/tov024
PG 8
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600010
PM 26470156
ER
PT J
AU Bernklau, EJ
Hibbard, BE
Dick, DL
Rithner, CD
Bjostad, LB
AF Bernklau, E. J.
Hibbard, B. E.
Dick, D. L.
Rithner, C. D.
Bjostad, L. B.
TI Monogalactosyldiacylglycerols as Host Recognition Cues for Western Corn
Rootworm Larvae (Coleoptera: Chrysomelidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE Diabrotica virgifera virgifera; galactolipid; Zea mays;
monogalactosyldiacylglycerol; host recognition
ID FEEDING STIMULANTS; ENTOMOPATHOGENIC NEMATODES; BEHAVIORAL-RESPONSES;
LIPID-COMPOSITION; CARBON-DIOXIDE; MAIZE ROOTS; BEETLE; L.; HERBIVORES;
LEAVES
AB Monogalactosyldiacylglycerol (MGDG) was identified as a host recognition cue for larvae of the western corn rootworm Diabrotica virgifera virgifera LeConte. An active glycolipid fraction obtained from an extract of germinating maize roots was isolated with thin layer chromatography using a bioassay-driven approach. When analyzed with LC-MS (positive ion scanning), the assay-active spot was found to contain four different MGDG species: 18:3-18:3 (1,2-dilinolenoyl), 18:2-18:3 (1-linoleoyl, 2-linolenoyl), 18:2-18:2 (1,2-dilinoleoyl), and 18:2-16:0 (1-linoleoyl, 2-palmitoyl). A polar fraction was also needed for activity. When combined with a polar fraction containing a blend of sugars (glucose: fructose: sucrose: myoinositol), the isolated MGDG elicited a unique tight-turning behavior by neonate western corn rootworm larvae that is indicative of host recognition. In behavioral bioassays where disks treated with the active blend were exposed to successive sets of rootworm larvae, the activity of MGDG increased over four exposures, suggesting that larvae may be responding to compounds produced after enzymatic breakdown of MGDG. In subsequent tests with synthetic blends composed of theoretical MGDG-breakdown products, larval responses to four synthetic blends were not significantly different (P<0.5) than the response to isolated MGDG. GC-MS analysis showed modest increases in the amounts of the 16:0, 18:0, and 18:3 free fatty acids released from MGDG after a 30-min exposure to rootworm larvae, which is consistent with the enzymatic breakdown hypothesis.
C1 [Bernklau, E. J.; Bjostad, L. B.] Colorado State Univ, Dept Bioagr Sci & Pest Management, Ft Collins, CO 80523 USA.
[Hibbard, B. E.] Univ Missouri, USDA ARS, Columbia, MO 65211 USA.
[Dick, D. L.; Rithner, C. D.] Colorado State Univ, Dept Chem, Ft Collins, CO 80523 USA.
RP Bernklau, EJ (reprint author), Colorado State Univ, Dept Bioagr Sci & Pest Management, Ft Collins, CO 80523 USA.
EM ebernklau@lamar.colostate.edu
FU United States Department of Agriculture, National Institute of Food and
Agriculture (USDA-AFRI) [2009-35302-05256]; Colorado Agricultural
Experiment Station [622]
FX We thank Julie Barry (United States Department of
Agriculture-Agricultural Research Service, Columbia, MO) for assistance
in western corn rootworm colony rearing and for shipments of eggs for
experiments. We thank the United States Department of
Agriculture-Agricultural Research Service (USDA-ARS) North Central
Regional Plant Introduction Station for providing seed for evaluation.
Funding for this project was provided by the United States Department of
Agriculture, National Institute of Food and Agriculture (USDA-AFRI)
Grant Number 2009-35302-05256 and the Colorado Agricultural Experiment
Station (project number 622).
NR 41
TC 5
Z9 5
U1 5
U2 16
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 539
EP 548
DI 10.1093/jee/tov025
PG 10
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600018
PM 26470164
ER
PT J
AU Hock, V
Chouinard, G
Lucas, E
Cormier, D
Leskey, TC
Wright, SE
Zhang, AJ
Pichette, A
AF Hock, Virginia
Chouinard, Gerald
Lucas, Eric
Cormier, Daniel
Leskey, Tracy C.
Wright, Starker E.
Zhang, Aijun
Pichette, Andre
TI Behavioral Responses of Plum Curculio (Coleoptera: Curculionidae) to
Different Enantiomer Concentrations and Blends of the Synthetic
Aggregation Pheromone Grandisoic Acid
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE aggregation pheromone; attractant; repellent; odour; olfactometer
ID CONOTRACHELUS-NENUPHAR COLEOPTERA; BAITED TRAP TREES; EASTERN
UNITED-STATES; STRAWBERRY BLOSSOM WEEVIL; APPLE ORCHARDS; ADULTS
COLEOPTERA; BOLL-WEEVIL; HOST FRUIT; HERBST COLEOPTERA; SEX-PHEROMONE
AB The plum curculio, Conotrachelus nenuphar (Herbst) (Coleoptera: Curculionidae), is an important pest of fruit in North America. Males produce an aggregation pheromone (grandisoic acid) that attracts both sexes of the northern univoltine and the southern multivoltine strains. Grandisoic acid ((1R, 2S)-1-methyl-2-(1-methylethenyl)-cyclobutaneacetic acid) is a chiral molecule containing one chiral center. A synthetic racemic mixture will contain two optical isomers that are mirror images of each other with equal amounts of (+)- and (-)-enantiomeric isomers. Male plum curculio only produce the (+) enantiomer. Some enantiomers can have antagonistic effects on the attraction of weevils to pheromones. An understanding of the effect of both enantiomers on the behaviour of plum curculio is needed to develop more efficient trap baits. Behavioural bioassays were conducted in a dual-choice still-air vertical olfactometer using a quantity of 1.5 ml of both (+) and (-) synthetic enantiomers and the racemic mixture of grandisoic acid with live female responders to determine which concentration and enantiomeric purity is the most attractive and if there is an antagonistic effect of the unnatural (-) enantiomer. Results indicated that plum curculio were attracted to low concentrations of the (+) enantiomer at 72% enantiomeric excess, but that strains were attracted to different concentrations of the (+) enantiomer (2 x 10(-7) mg/ml for univoltine, 2 x 10(-9) mg/ml for multivoltine).
C1 [Hock, Virginia; Chouinard, Gerald; Cormier, Daniel] IRDA, Lab Prod Fruitiere Integree, St Bruno De Montarville, PQ J3V 0G7, Canada.
[Hock, Virginia; Lucas, Eric; Leskey, Tracy C.] Univ Quebec Montreal, Dept Sci Biol, Lab Lutte Biol, Montreal, PQ H3C 3P8, Canada.
[Wright, Starker E.] USDA ARS, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
[Zhang, Aijun] USDA ARS, Beltsville Agr Res Ctr, Invas Insect Biocontrol & Behav Lab, Beltsville, MD 20705 USA.
[Pichette, Andre] UQAC, Dept Sci Fondamentales, Chicoutimi, PQ G7H 2B1, Canada.
RP Hock, V (reprint author), IRDA, Lab Prod Fruitiere Integree, 335 Chemin Vingt Cinq Est, St Bruno De Montarville, PQ J3V 0G7, Canada.
EM vhbioresearch@gmail.com
FU Programme de soutien a l'innovation en agroalimentaire de le Ministere
de l'Agriculture, des Pecheries et de l'Alimentation du Quebec (Quebec,
QC, Canada); USDA-NIFA Specialty Crops Research Initiative
[2009-51181-06005]
FX We would like to thank Sylvie Bellerose and Franz Vanoosthuyse for their
assistance in the laboratory and field. These studies were supported by
a grant from Programme de soutien a l'innovation en agroalimentaire de
le Ministere de l'Agriculture, des Pecheries et de l'Alimentation du
Quebec (Quebec, QC, Canada), and, in part, by grant 2009-51181-06005
from USDA-NIFA Specialty Crops Research Initiative.
NR 63
TC 1
Z9 1
U1 4
U2 11
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 549
EP 558
DI 10.1093/jee/tov026
PG 10
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600019
PM 26470165
ER
PT J
AU Armstrong, JS
Rooney, WL
Peterson, GC
Villenueva, RT
Brewer, MJ
Sekula-Ortiz, D
AF Armstrong, J. Scott
Rooney, William L.
Peterson, Gary C.
Villenueva, Raul T.
Brewer, Michael J.
Sekula-Ortiz, Danielle
TI Sugarcane Aphid (Hemiptera: Aphididae): Host Range and Sorghum
Resistance Including Cross-Resistance From Greenbug Sources
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE host plant resistance; sugarcane aphid; greenbug; cross-resistance
ID REGISTRATION; HOMOPTERA
AB The graminous host range and sources of sorghum [Sorghum bicolor (L.) Moench.] plant resistance, including cross-resistance from greenbug, Schizaphis graminum (Rondani), were studied for the newly emerging sugarcane aphid, Melanaphis sacchari (Zehntner), in greenhouse no-choice experiments and field evaluations. The sugarcane aphid could not survive on field corn, Zea mays (L.), Teff grass, Eragrostis tef (Zucc.), proso millet, Panicum miliaceum L., barley, Hordeum vulgare L., and rye, Secale cereale L. Only sorghum genotypes served as hosts including Johnsongrass, Sorghum halepense (L.), a highly suitable noncrop host that generates high numbers of sugarcane aphid and maintains moderate phenotypic injury. The greenbug-resistant parental line RTx2783 that is resistant to greenbug biotypes C and E was resistant to sugarcane aphid in both greenhouse and field tests, while PI 55607 greenbug resistant to biotypes B, C, and E was highly susceptible. PI 55610 that is greenbug resistant to biotypes B, C, and E maintained moderate resistance to the sugarcane aphid, while greenbug-resistant PI 264453 was highly susceptible to sugarcane aphid. Two lines and two hybrids from the Texas A&M breeding program B11070, B11070, AB11055-WF1-CS1/RTx436, and AB11055-WF1-CS1/RTx437 were highly resistant to sugarcane aphid, as were parental types SC110, SC170, and South African lines Ent62/SADC, (Macia/TAM428)-LL9, (SV1*Sima/IS23250)-LG15. Tam428, a parental line that previously showed moderate resistance in South Africa and India, also showed moderate resistance in these evaluations. Overall, 9 of 20 parental sorghum entries tested for phenotypic damage in the field resulted in good resistance to the sugarcane aphid and should be utilized in breeding programs that develop agronomically acceptable sorghums for the southern regions of the United States.
C1 [Armstrong, J. Scott] ARS, USDA, Wheat Peanut & Other Field Crops Res Unit, Stillwater, OK 74075 USA.
[Rooney, William L.] Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA.
[Peterson, Gary C.] Texas AgriLife Res & Extens Ctr, Lubbock, TX 79403 USA.
[Villenueva, Raul T.; Sekula-Ortiz, Danielle] Texas A&M AgriLife Res & Extens Ctr, Weslaco, TX 78596 USA.
[Brewer, Michael J.] Texas A&M AgriLife Res & Extens Ctr, Corpus Christi, TX 78406 USA.
RP Armstrong, JS (reprint author), ARS, USDA, Wheat Peanut & Other Field Crops Res Unit, 1301 North Western Rd, Stillwater, OK 74075 USA.
EM scott.armstrong@ars.usda.gov
NR 20
TC 7
Z9 7
U1 8
U2 25
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 576
EP 582
DI 10.1093/jee/tou065
PG 7
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600022
PM 26470168
ER
PT J
AU Joseph, SV
Nita, M
Leskey, TC
Bergh, JC
AF Joseph, Shimat V.
Nita, Mizuho
Leskey, Tracy C.
Bergh, J. Christopher
TI Temporal Effects on the Incidence and Severity of Brown Marmorated Stink
Bug (Hemiptera: Pentatomidae) Feeding Injury to Peaches and Apples
during the Fruiting Period in Virginia
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE Halyomorpha halys; Malus domestica; Prunus persica; injury
ID MID-ATLANTIC APPLE; HALYOMORPHA-HALYS; AGGREGATION PHEROMONE; TREE
FRUIT; HETEROPTERA; ORCHARDS; INSECTICIDES; IMPACT
AB Exclusion cages were used to compare the incidence and severity of feeding injury from brown marmorated stink bug, Halyomorpha halys (Stal) (Hemiptera: Pentatomidae), on 'Redhaven' peaches, 'Golden Delicious' apples, and 'Smoothee Golden' apples at harvest, following sequential periods of exposure to natural H. halys populations during the 2011 and 2012 growing seasons in Virginia. The fruit used in these experiments were in orchards or on trees that were not managed for H. halys. Treatments were sets of 50 fruit that were always caged, never caged, or exposed during one interval during the fruiting period of peaches and apples in the Mid-Atlantic region of the United States. The cages effectively prevented feeding injury from H. halys. Peaches and apples that were never caged showed the highest percentages of injured fruit at harvest. Exposure treatment had a significant effect on the percentage of fruit showing external injury at harvest in both years for apples and in 2012 for peaches, and a significant effect on the percentage of apples and peaches showing internal injury at harvest in both years. There was no consistent effect of each exposure period on peach injury, but apples exposed during the mid-to latter portion of the season tended to show most injury. Across all exposure periods, more internal than external injuries were recorded at harvest from peaches, while apples tended to have equal or very similar numbers of both kinds of injury. The implications of these results to H. halys management in eastern apple orchards are discussed.
C1 [Joseph, Shimat V.; Nita, Mizuho; Bergh, J. Christopher] Virginia Tech, Alson H Smith Jr Agr Res & Extens Ctr, Winchester, VA 22602 USA.
[Leskey, Tracy C.] USDA ARS, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
RP Joseph, SV (reprint author), Univ Calif Cooperat Extens, 1432 Abbott St, Salinas, CA 93901 USA.
EM svjoseph@ucanr.edu
FU U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS)
[58-1931-0-109]; U.S. Department of Agriculture-National Institute of
Food and Agriculture-Specialty Crop Research Initiative (USDA-NIFA-SCRI)
[2011-51181-30937]; Virginia Apple Research Program
FX Thanks to J. Engelman for technical assistance, and to our summer
interns, A. Eakins, A. Smith, L. Williamson, S. Hover, K. Witte, T.
Eakins, and S. Poulose. This research was supported by U.S. Department
of Agriculture-Agricultural Research Service (USDA-ARS) Specific
Cooperative Agreement 58-1931-0-109, U.S. Department of
Agriculture-National Institute of Food and Agriculture-Specialty Crop
Research Initiative (USDA-NIFA-SCRI) Grant 2011-51181-30937, and the
Virginia Apple Research Program.
NR 30
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U1 4
U2 20
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 592
EP 599
DI 10.1093/jee/tou059
PG 8
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600024
PM 26470170
ER
PT J
AU Burks, CS
Higbee, BS
AF Burks, Charles S.
Higbee, Bradley S.
TI Impact of Trap Design and Density on Effectiveness of a Commercial
Pheromone Lure for Monitoring Navel Orangeworm (Lepidoptera: Pyralidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE almond; pistachio; walnut; Amyelois transitella; tree nut
ID CODLING MOTH LEPIDOPTERA; PREDICTING INFESTATION LEVELS;
EPIPHYAS-POSTVITTANA WALKER; CALIFORNIA ALMOND ORCHARDS; BAITED DELTA
TRAP; SEX-PHEROMONE; AMYELOIS-TRANSITELLA; IN-FIELD; TORTRICIDAE;
CAPTURES
AB The navel orangeworm is an important pest of almonds, pistachios, and walnuts. A commercial pheromone lure for this pest became publicly available in 2013. We compared effectiveness of this synthetic lure (NOW Biolure) between common commercial trap designs, and with unmated females in wing traps. Orange wing traps and delta traps captured similar numbers of males when each was baited with females, although there was a significantly greater density of captured males on the smaller glue area of the delta traps. In contrast, lure-baited wing traps captured about half the males captured in female-baited wing traps in single-night tests. In these single-night tests, wing traps baited with NOW Biolure captured significantly more males than delta traps baited with NOW Biolure, and bucket traps and delta traps baited with NOW Biolure captured similar numbers of males. When the sampling interval was extended to a week, the performance of lure-baited and female-baited wing traps was more similar. Delta and bucket traps baited with NOW Biolure generally performed more poorly than wing traps baited with NOW Biolure in these weekly monitoring tests. However, the bucket traps occasionally outperformed the other trap types during periods of peak abundance. Navel orangeworm traps at a density of one per 4 ha detected differences in abundance between adjacent walnut varieties, whereas such differences were not detected with one trap per 20 ha. The implications of these findings for monitoring for navel orangeworm in these different host crops are discussed.
C1 [Burks, Charles S.] USDA ARS, San Joaquin Valley Agr Sci Ctr, Parlier, CA 93648 USA.
[Higbee, Bradley S.] Paramount Farming Co, Shafter, CA 93263 USA.
RP Burks, CS (reprint author), USDA ARS, San Joaquin Valley Agr Sci Ctr, 9611 S Riverbend Ave, Parlier, CA 93648 USA.
EM charles.burks@ars.usda.gov
FU Almond Board of California; California Pistachio Research Board;
California Walnut Board
FX We gratefully acknowledge expert technical assistance from Steven Weir,
Mario Salinas, Ashlee Pedro, Emmanuel Higuera, and Eddie Placentia.
Suterra LLC provided NOW Biolure for this research. Partial support for
this research was provided by the Almond Board of California, the
California Pistachio Research Board, and the California Walnut Board.
NR 49
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PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 600
EP 610
DI 10.1093/jee/tou062
PG 11
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600025
PM 26470171
ER
PT J
AU Morato, S
Shelly, T
Rull, J
Aluja, M
AF Morato, Santiago
Shelly, Todd
Rull, Juan
Aluja, Martin
TI Sexual Competitiveness of Anastrepha ludens (Diptera: Tephritidae) Males
Exposed to Citrus aurantium and Citrus paradisi Essential Oils
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE Tephritidae; Mexican fruit fly; sexual competitiveness; aroma; host
ID MEDITERRANEAN FRUIT-FLY; CERATITIS-CAPITATA DIPTERA; GINGER ROOT OIL;
OPTIMIZING STERILITY INDUCTION; INSECT TECHNIQUE PROGRAMS; ENHANCES
MATING SUCCESS; FIELD-CAGE TRIALS; FLIES DIPTERA; AGGREGATION
PHEROMONES; PHYTOPHAGOUS INSECTS
AB Males of the Mediterranean fruit fly (Ceratitis capitata (Wiedemann)) display increased mating competitiveness following exposure to the odor of certain host and nonhost plants, and this phenomenon has been used in the sterile insect technique to boost the mating success of released, sterile males. Here, we aimed to establish whether males of the Mexican fruit fly (Anastrepha ludens (Loew)) gain a mating advantage when exposed to the aroma of two preferred hosts, grapefruit (Citrus paradisi Macfadyen) and bitter orange (Citrus aurantium L.). Under seminatural conditions, we observed that, in trials using wildish males (from a young laboratory colony started with wild flies) exclusively, exposure to the aroma of bitter orange had no effect on male mating success but exposure to the odor grapefruit oil increased male mating success significantly. In a separate test involving both exposed and nonexposed wildish and mass-reared, sterile males, although wildish males were clearly more competitive than sterile males, exposure to grapefruit oil had no detectable effect on either male type. Exposure to oils had no effect on copulation duration in any of the experiments. We discuss the possibility that the positive effect of grapefruit essential oils on wildish male competitiveness may have been linked to exposure of females to grapefruit as a larval food, which may have imprinted them with grapefruit odors during pupal eclosion and biased their response as adults to odors of their maternal host.
C1 [Morato, Santiago; Rull, Juan; Aluja, Martin] AC Red de Manejo Biorrac Plagas & Vectores, Inst Ecol, Xalapa 91000, Veracruz, Mexico.
[Shelly, Todd] USDA APHIS, Waimanalo, HI 96795 USA.
RP Aluja, M (reprint author), AC Red de Manejo Biorrac Plagas & Vectores, Inst Ecol, Apartado Postal 63, Xalapa 91000, Veracruz, Mexico.
EM martin.aluja@inecol.mx
FU Consejo Nacional de Ciencia y Tecnologia (CONACyT) [46846-Q]; Sistema
Nacional de Investigadores (SNI); Campana Nacional contra Moscas de la
Fruta
FX We are grateful to Alberto Anzures Dadda, Andrea Birke, Larissa Guillen,
and Delia Garibay for logistic and technical support; to Jose Manuel
Gutierrez Ruelas, Pablo Montoya, and Jose Arredondo Gordillo for sterile
fly supply; and to Emilio Acosta for wild fly collections. Funding was
obtained through the Consejo Nacional de Ciencia y Tecnologia (CONACyT)
project "Paso Numero Tres en Nuestro Esfuerzo por Armar el Rompecabezas
de la Biologia Reproductiva de las Moscas de la Fruta y sus Enemigos
Naturales" (46846-Q) and the Sistema Nacional de Investigadores (SNI),
as well as the Campana Nacional contra Moscas de la Fruta through
scientfic cooperative research agreements between the Campana Nacional
contra Moscas de la fruta, Secretaria de Agricultura Ganaderia
Desarrollo Rural Pesca y Alimentacion (SAGARPA)/Instituto Interamericano
de Cooperacion para la Agricultura (IICA) and the Instituto de Ecologia
A.C. (INECOL) 2008 and 2009. This work was part of Santiago Moratos Bsc
thesis under the direction of Martin Aluja.
NR 79
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PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 621
EP 628
DI 10.1093/jee/tou054
PG 8
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600027
PM 26470173
ER
PT J
AU Palumbo, JC
Prabhaker, N
Reed, DA
Perring, TM
Castle, SJ
Huang, TI
AF Palumbo, John C.
Prabhaker, Nilima
Reed, Darcy A.
Perring, Thomas M.
Castle, Steven J.
Huang, Ta-I
TI Susceptibility of Bagrada hilaris (Hemiptera: Pentatomidae) to
Insecticides in Laboratory and Greenhouse Bioassays
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE baseline data; insecticide; bioassay technique; invasive species
ID PAINTED BUG; HALYS HEMIPTERA; MANAGEMENT; BIOEFFICACY; BEHAVIOR;
MUSTARD; INJURY; IMPACT; BURM.
AB Field-collected nymphs and adults of Bagrada hilaris (Burmeister) (Hemiptera: Penatatomidae) from three locations were evaluated for susceptibility to insecticides representing 10 classes of insecticide chemistry. Although relative susceptibilities differed between leaf-spray and leaf-dip Petri dish bioassays, consistently low LC50 values were determined for chlorpyrifos, bifenthrin, and lambda-cyhalothrin. Fenpropathrin and methomyl had intermediate values. Susceptibility to dinotefuran varied depending on the bioassay, possibly owing to leaf substrates used in the two bioassays. In soil systemic bioassays, the LC50 value of dinotefuran was significantly greater than that of two other neonicotinoids, imidacloprid and thiamethoxam, and the anthranilic diamide, cyantraniliprole. Mortality and feeding damage of B. hilaris and plant growth on insecticide-treated plants in greenhouse trials were consistent with the laboratory bioassays; the best results were seen with bifenthrin, methomyl, and chlorpyrifos. Mortality to the neonicotinoids was not evident; however, feeding damage and plant growth responses on dinotefuran-treated plants damage were similar to the noninfested control. This highlights the apparent antifeedant properties of dinotefuran that may have prevented adults from injuring broccoli plants after exposure to foliar spray residues. Data presented serve as baseline susceptibilities that can be used to monitor for resistance development in field populations of B. hilaris.
C1 [Palumbo, John C.; Huang, Ta-I] Univ Arizona, Dept Entomol, Yuma Agr Ctr, Yuma, AZ 85364 USA.
[Prabhaker, Nilima; Reed, Darcy A.; Perring, Thomas M.] Univ Calif Riverside, Dept Entomol, Riverside, CA 92521 USA.
[Castle, Steven J.] USDA ARS, Arid Land Agr Res Ctr, Maricopa, AZ 85239 USA.
RP Palumbo, JC (reprint author), Univ Arizona, Dept Entomol, Yuma Agr Ctr, Yuma, AZ 85364 USA.
EM jpalumbo@cals.arizona.edu
FU U.S. Department of Agriculture-National Institute of Food and
Agriculture (USDA-NIFA) Western Region IPM Grants Program
[2011-34103-30851]; USDA-NIFA Critical Issues Grants Program
[2011-05298]; U.S. Department of Agriculture-Agricultural Marketing
Service (USDA-AMS) Specialty Crops Block Grants Program [SCRBP 11-02]
FX We gratefully acknowledge Leo Chavez, Luis Ledesma, Javier Ruiz, Gerardo
Villegas, Crystal Johnson, Lorena Basta-Pena, Timothy Lewis, and James
Hepler for their assistance in growing plants and maintaining B. hilaris
colonies. We also thank Dale Spurgeon (U.S. Department of
Agriculture-Agricultural Research Service [USDA-ARS], Maricopa, AZ) and
three anonymous reviewers for their constructive comments on an earlier
manuscript draft. This research was funded, in part, by the U.S.
Department of Agriculture-National Institute of Food and Agriculture
(USDA-NIFA) Western Region IPM Grants Program under award
2011-34103-30851, USDA-NIFA Critical Issues Grants Program under award
2011-05298, and U.S. Department of Agriculture-Agricultural Marketing
Service (USDA-AMS) Specialty Crops Block Grants Program administered by
the Arizona Department of Agriculture under award SCRBP 11-02. Mention
of trade names or commercial products in this publication is solely for
the purpose of providing specific information and does not imply
recommendation or endorsement by the University of Arizona, the
University of California, Arizona Department of Agriculture, or the U.S.
Department of Agriculture.
NR 43
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U1 1
U2 12
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 672
EP 682
DI 10.1093/jee/tov010
PG 11
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600032
PM 26470178
ER
PT J
AU Pinero, JC
Souder, SK
Smith, TR
Fox, AJ
Vargas, RI
AF Pinero, Jaime C.
Souder, Steven K.
Smith, Trevor R.
Fox, Abbie J.
Vargas, Roger I.
TI Ammonium Acetate Enhances the Attractiveness of a Variety of
Protein-Based Baits to Female Ceratitis capitata (Diptera: Tephritidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE beer waste; monitoring; suppression; integrated pest management
ID MEDITERRANEAN FRUIT-FLY; RHAGOLETIS-POMONELLA DIPTERA; FLIES DIPTERA;
ODOR; APPLE; LURES; FOOD; ATTRACTANTS; EFFICACY; SPHERES
AB Ammonia and its derivatives are used by female fruit flies (Diptera: Tephritidae) as volatile cues to locate protein-rich food needed to produce their eggs. This need for external protein sources has led to the development of behaviorally based control strategies such as food-based lures and insecticidal baits targeting pestiferous fruit fly species. In field cage studies conducted in Hawaii, we examined the behavioral response of laboratory-reared male and female Mediterranean fruit fly, Ceratitis capitata (Wiedemann), to seven commercially available protein baits and to beer waste, a relatively inexpensive and readily available substance. Each material was tested alone or in combination with either ammonium acetate or ammonium carbonate. For the majority of baits evaluated, the presence of ammonium acetate, but not ammonium carbonate, elicited a significantly greater level of response of female C. capitata compared with the protein baits alone. The addition of ammonium acetate to selected baits increased bait attractiveness to a level comparable with that elicited by the most widely used spinosad-based protein bait, GF-120. Our findings indicate that the addition of ammonium acetate to commercially available proteinaceous baits and to beer waste can greatly improve their attractiveness to C. capitata, potentially increasing the bait's effectiveness for fruit fly monitoring and suppression.
C1 [Pinero, Jaime C.] Lincoln Univ, Cooperat Res & Extens, Jefferson City, MO 65101 USA.
[Souder, Steven K.; Vargas, Roger I.] USDA ARS, US Pacific Basin Agr Res Ctr, Hilo, HI 96720 USA.
[Smith, Trevor R.] Florida Dept Agr & Consumer Serv, Div Plant Ind, Gainesville, FL 32608 USA.
[Fox, Abbie J.] USDA, APHIS, PPQ, Florida Fruit Fly Detect Program, Palmetto, FL 34221 USA.
RP Pinero, JC (reprint author), Lincoln Univ, Cooperat Res & Extens, 900 Chestnut St, Jefferson City, MO 65101 USA.
EM pineroj@lincolnu.edu
NR 39
TC 1
Z9 1
U1 0
U2 9
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 694
EP 700
DI 10.1093/jee/tov046
PG 7
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600034
PM 26470180
ER
PT J
AU Mullins, AJ
Messenger, MT
Hochmair, HH
Tonini, F
Su, NY
Riegel, C
AF Mullins, Aaron J.
Messenger, Matthew T.
Hochmair, Hartwig H.
Tonini, Francesco
Su, Nan-Yao
Riegel, Claudia
TI Dispersal Flights of the Formosan Subterranean Termite (Isoptera:
Rhinotermitidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE area-wide management; invasive species; IPM; modeling; nuptial flight
ID COPTOTERMES-FORMOSANUS; URBAN-ENVIRONMENT; UNITED-STATES; COLONY; AREA;
INFESTATIONS; POPULATIONS; ELIMINATION; MANAGEMENT; REINVASION
AB The Formosan subterranean termite, Coptotermes formosanus Shiraki, is a pest of major economic concern. This termite is particularly known for its tendency to establish populations in nonendemic areas via maritime vessels as well as human-aided transport of infested materials. The natural spread of this species after new introductions occurs in part by dispersal flights originating from mature colonies. Dispersal flight activity is also the primary variable for the evaluation of area-wide management programs. Few studies exist describing the dynamics and distribution of a typical dispersal flight for this species. The present study used data collected by mark-recapture of C. formosanus alates over 12 individual evenings of dispersal flights in the New Orleans French Quarter. In this study, we found that for one selected flight dispersal location, which was not affected by a high density of trap locations nearby, alates flew on average 621 m from their parent colony. A new record of a 1,300-m dispersal flight was recorded. Spatial analysis showed that neither wind nor light affected the direction of flight, which may, however, be attributed to scarce light and wind measurements in the study region.
C1 [Mullins, Aaron J.; Hochmair, Hartwig H.; Tonini, Francesco; Su, Nan-Yao] Univ Florida, Ft Lauderdale Res & Educ Ctr, Davie, FL 33314 USA.
[Messenger, Matthew T.] Vet Serv, USDA, APHIS, Riverdale, MD 20737 USA.
[Riegel, Claudia] New Orleans Mosquito Termite & Rodent Control Boa, New Orleans, LA 70122 USA.
RP Mullins, AJ (reprint author), Univ Florida, Ft Lauderdale Res & Educ Ctr, 3205 Coll Ave, Davie, FL 33314 USA.
EM amull81@ufl.edu
FU USDA-ARS [58-6435-8-105, 58-6435-8-108]
FX We would like to thank Edgar Bordes, Mike Carroll, and the staff and
technicians of the New Orleans Mosquito, Termite & Rodent Control Board
for labor and technical support of this project. Dennis Ring, Pete Levy,
and the LSU AgCenter were integral to this project by granting us access
to recaptured alates on glue-board traps. Funding for this project was
provided, in part, by the USDA-ARS under the grant agreement
58-6435-8-105 and 58-6435-8-108.
NR 29
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PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 707
EP 719
DI 10.1093/jee/tov022
PG 13
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600036
PM 26470182
ER
PT J
AU Wangila, DS
Gassmann, AJ
Petzold-Maxwell, JL
French, BW
Meinke, LJ
AF Wangila, David S.
Gassmann, Aaron J.
Petzold-Maxwell, Jennifer L.
French, B. Wade
Meinke, Lance J.
TI Susceptibility of Nebraska Western Corn Rootworm (Coleoptera:
Chrysomelidae) Populations to Bt Corn Events
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE genetically modified crop; evolution; resistance management; Bacillus
thuringiensis; Diabrotica virgifera virgifera
ID DIABROTICA-VIRGIFERA-VIRGIFERA; FIELD-EVOLVED RESISTANCE; INSECT
RESISTANCE; TRANSGENIC-MAIZE; CRY34/35AB1 PROTEINS; LARVAL INJURY;
CROPS; SELECTION; ADAPTATION; MORTALITY
AB Transgenic plants have been widely adopted by growers to manage the western corn rootworm, Diabrotica virgifera virgifera LeConte, in field corn. Because of reduced efficacy in some Nebraska fields after repeated use of Cry3Bb1-expressing hybrids, single plant bioassays were conducted in 2012 and 2013 to characterize the susceptibility of western corn rootworm populations to the rootworm-active proteins Cry3Bb1, mCry3A, and Cry34/35Ab1. Results demonstrate that there are heritable differences in susceptibility of Nebraska western corn rootworm populations to rootworm-active Bt traits. Proportional survival and corrected survival data coupled with field histories collectively support the conclusion that a level of field resistance to Cry3Bb1 has evolved in some Nebraska populations in response to selection pressure and that cross-resistance exists between Cry3Bb1 and mCry3A. There was no apparent cross-resistance between Cry34/35Ab1 and either Cry3Bb1 or mCry3A. The potential implications of these results on current and future corn rootworm management strategies are discussed.
C1 [Wangila, David S.; Meinke, Lance J.] Univ Nebraska, Dept Entomol, Lincoln, NE 68583 USA.
[Gassmann, Aaron J.; Petzold-Maxwell, Jennifer L.] Iowa State Univ, Dept Entomol, Ames, IA 50011 USA.
[French, B. Wade] USDA ARS, North Cent Agr Res Lab, Brookings, SD 57006 USA.
RP Meinke, LJ (reprint author), Univ Nebraska, Dept Entomol, Lincoln, NE 68583 USA.
EM lmeinke1@unl.edu
FU U.S. Department of Agriculture (USDA) National Institute of Food and
Agriculture [2012-33522-20010]; Nebraska Agricultural Experiment
Station-Enhanced Hatch-Multi State Project [NEB-28-106]
FX We thank James Brown and summer interns for helping with western corn
rootworm collection from the field and laboratory rearing. We also thank
Monsanto Company, St. Louis, MO; DuPont-Pioneer, Johnston, IA; and
Syngenta Seeds, Minnetonka, MN, for providing seed for this study. This
study was funded by Biotechnology Risk Assessment Grant Program
competitive grant 2012-33522-20010 from the U.S. Department of
Agriculture (USDA) National Institute of Food and Agriculture and by
Nebraska Agricultural Experiment Station-Enhanced Hatch-Multi State
Project NEB-28-106.
NR 60
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PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 742
EP 751
DI 10.1093/jee/tou063
PG 10
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600040
PM 26470186
ER
PT J
AU Rangasamy, M
Mcauslane, HJ
Backus, EA
Cherry, RH
AF Rangasamy, Murugesan
Mcauslane, Heather J.
Backus, Elaine A.
Cherry, Ronald H.
TI Differential Probing Behavior of Blissus insularis (Hemiptera:
Blissidae) on Resistant and Susceptible St. Augustinegrasses
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE electrical penetration graph; southern chinch bug; feeding monitor; host
plant resistance; turfgrass
ID CHINCH BUGS HEMIPTERA; ELECTRICAL PENETRATION GRAPHS; HOST-PLANT
RESISTANCE; FEEDING-BEHAVIOR; SCHIZAPHIS-GRAMINUM; STYLET PENETRATION;
APHID; LYGAEIDAE; HETEROPTERA; PHLOEM
AB Southern chinch bug, Blissus insularis Barber, is a severe pest of St. Augustinegrass throughout the southern United States. Host plant resistance is an environmentally friendly method to manage chinch bug infestations and is increasingly important, as the southern chinch bug develops resistance to insecticides. In this study, in an effort to understand resistance mechanisms in two varieties of St. Augustinegrass ('FX-10' and 'NUF-76'), we used the electrical penetration graph method to quantify stylet probing behaviors in two resistant and two susceptible St. Augustinegrass varieties. Overall, chinch bugs spent less time probing on resistant FX-10 and NUF-76 than on susceptible 'Floratam' and 'Palmetto', and individual probes were shorter in average duration but more numerous in resistant varieties than in susceptible varieties. During probing, chinch bugs spent more time in pathway-associated stylet activities (i.e., penetration through epidermal and mesophyll tissue) in the resistant varieties than in the susceptible varieties, likely indicating difficulty in finding and accessing an ingestion site. As a consequence, chinch bugs spent proportionately much less time engaged in xylem ingestion in both resistant varieties than in susceptible varieties but only in FX-10 were phloem-associated activities significantly reduced compared with those in susceptible varieties. We conclude that there is evidence for non-phloem-associated chinch-bug resistance factors in both NUF-76 and FX-10, and phloem-associated factors in FX-10.
C1 [Rangasamy, Murugesan; Mcauslane, Heather J.] Univ Florida, Dept Entomol & Nematol, Gainesville, FL 32611 USA.
[Backus, Elaine A.] USDA ARS, Crop Dis Pests & Genet, Parlier, CA 93648 USA.
[Cherry, Ronald H.] UF IFAS, Everglades Res & Educ Ctr, Belle Glade, FL 33430 USA.
RP Mcauslane, HJ (reprint author), Univ Florida, Dept Entomol & Nematol, Gainesville, FL 32611 USA.
EM hjmca@ufl.edu
FU Wedgeworth Family Foundation; Florida Agricultural Experiment Station
FX We thank Tim Ebert (University of Florida's Institute of Food and
Agricultural Sciences [UF/IFAS], Citrus Research and Education Center,
Lake Alfred, FL) for help with statistical analysis, Russell Nagata
(UF/IFAS, Everglades Research and Education Center, Belle Glade, FL) for
providing the St. Augustinegrass varieties, and the Wedgeworth Family
Foundation for funding M.R. This research was supported by the Florida
Agricultural Experiment Station.
NR 44
TC 1
Z9 1
U1 1
U2 5
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 780
EP 788
DI 10.1093/jee/tou061
PG 9
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600044
PM 26470190
ER
PT J
AU Puterka, GJ
Giles, KL
Brown, MJ
Nicholson, SJ
Hammon, RW
Peairs, FB
Randolph, TL
Michaels, GJ
Bynum, ED
Springer, TL
Armstrong, JS
Mornhinweg, DW
AF Puterka, G. J.
Giles, K. L.
Brown, M. J.
Nicholson, S. J.
Hammon, R. W.
Peairs, F. B.
Randolph, T. L.
Michaels, G. J.
Bynum, E. D.
Springer, T. L.
Armstrong, J. S.
Mornhinweg, D. W.
TI Change in Biotypic Diversity of Russian Wheat Aphid (Hemiptera:
Aphididae) Populations in the United States
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE host plant resistance; sustainable resistance; barley; wheat; host race
ID BARLEY GERMPLASM; RESISTANCE GENES; PLANT-RESPONSES; NORTH-AMERICA;
HOMOPTERA; INHERITANCE; VIRULENCE; COLORADO
AB A key component of Russian wheat aphid, Diuraphis noxia (Kurdjumov), management has been through planting resistant wheat cultivars. A new biotype, RWA2, appeared in 2003 which caused widespread damage to wheat cultivars containing the Dn4 gene. Biotypic diversity in Russian wheat aphid populations has not been addressed since 2005 when RWA2 dominated the biotype complex. Our objectives were to determine the biotypic diversity in the Central Great Plains and Colorado Plateau at regional (2010, 2011, 2013) and local (2012) levels and detect the presence of new Russian wheat aphid biotypes. Regional and within-field aphid collections were screened against Russian wheat aphid-resistant wheat genotypes containing genes Dn3, Dn4, Dn6, Dn7, Dn9, CI2401; and resistant barley STARS 9301B. In 2010, all aphid collections from Texas were avirulent to the Dn4 resistance gene in wheat. Regional results revealed Dn4 avirulent RWA6 was widespread (55-84%) in populations infesting wheat in both regions. Biotypes RWA1, 2, and 3/7 were equally represented with percentages < 20% each while RWA8 was rarely detected. Combining percentages of RWA1, 6, and 8 across regions to estimate avirulence to Dn4 gene revealed high percentages for both 2011 (64-80%) and 2013 (69-90%). In contrast, the biotype structure at the local level differed where biotype percentages varied up to >= 2-fold between fields. No new biotypes were detected; therefore, Dn7, CI2401, and STARS9301B remained resistant to all known Russian wheat aphid biotypes. This study documents a shift to Dn4 avirulent biotypes and serves as a valuable baseline for biotypic diversity in Russian wheat aphid populations prior to the deployment of new Russian wheat aphid-resistant wheat cultivars.
C1 [Puterka, G. J.; Brown, M. J.; Nicholson, S. J.; Armstrong, J. S.; Mornhinweg, D. W.] USDA ARS, Plant Sci Res Lab, Stillwater, OK 74074 USA.
[Giles, K. L.] Oklahoma State Univ, Dept Entomol & Plant Pathol, Stillwater, OK 74078 USA.
[Hammon, R. W.] Colorado State Univ, River Area Extens, Grand Junction, CO 81502 USA.
[Peairs, F. B.; Randolph, T. L.] Colorado State Univ, Dept Bioagr Sci & Pest Management, Ft Collins, CO 80523 USA.
[Michaels, G. J.; Bynum, E. D.] Texas A&M AgriLife Res & Extens Ctr, Amarillo, TX USA.
[Springer, T. L.] ARS, USDA, SPA, Range & Pasture Res, Woodward, OK 73801 USA.
RP Puterka, GJ (reprint author), USDA ARS, Plant Sci Res Lab, 1301 N Western, Stillwater, OK 74074 USA.
EM gary.puterka@ars.usda.gov
FU United States Department of Agriculture-National Initiative for Food and
Agriculture-Agricultural and Food Research Initiative (USDA-NIFA-AFRI)
[2010-51101-21642]
FX This research was partially supported by the following grant United
States Department of Agriculture-National Initiative for Food and
Agriculture-Agricultural and Food Research Initiative (USDA-NIFA-AFRI)
#2010-51101-21642.
NR 27
TC 2
Z9 2
U1 3
U2 9
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 798
EP 804
DI 10.1093/jee/tov008
PG 7
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600046
PM 26470192
ER
PT J
AU Arthur, FH
Starkus, LA
Mckay, T
AF Arthur, Frank H.
Starkus, Laura A.
Mckay, Tanja
TI Effects of Flour and Milling Debris on Efficacy of Beta-Cyfluthrin for
Control of Tribolium castaneum (Coleoptera: Tenebrionidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE beta-cyfluthrin; Tribolium castaneum; control
ID METHYL PLUS DELTAMETHRIN; STORED-PRODUCT INSECTS; SHORT-TIME INTERVALS;
WETTABLE POWDER; RESIDUAL TOXICITY; FOOD SOURCE; LABORATORY ASSESSMENT;
FIELD STRAINS; CONCRETE; CONFUSUM
AB Laboratory and field studies were conducted to determine if accumulation of a flour food source or milling debris affected residual efficacy of beta-cyfluthrin for control of Tribolium castaneum (Herbst), the red flour beetle. In the laboratory study, the high label rate of 20 mg active ingredient (AI)/m(2) gave effective control for 8 wks, regardless of whether or not the concrete was sealed prior to application or the presence of flour contamination. However, with the low label rate of 10 mg AI/m(2), the flour apparently absorbed the insecticide residues from the treated surface, and sealing the concrete did not have a beneficial effect on efficacy. Two field studies with the low label rate were conducted during autumn of 2012 and 2013 and summer of 2013, using only unsealed concrete. Accumulated milling debris caused a reduction in efficacy in the autumn studies, as shown by increased time to 100% knockdown, decreased mortality, and decreased residual efficacy. There was no such corresponding decrease in residual efficacy in the summer study. Overall, results of both studies show that accumulated food and milling debris can absorb residue of beta-cyfluthrin from a treated surface and have a negative impact on residual efficacy, particularly with the low label rate of 10 mg AI/m(2).
C1 [Arthur, Frank H.] ARS, USDA, Ctr Grain & Anim Hlth Res, Manhattan, KS 66502 USA.
[Starkus, Laura A.; Mckay, Tanja] Arkansas State Univ, Dept Biol Sci, State Univ, AR 72467 USA.
[Mckay, Tanja] Univ Arkansas, Arkansas Agr Expt Stn, State Univ, AR 72467 USA.
RP Arthur, FH (reprint author), ARS, USDA, Ctr Grain & Anim Hlth Res, 1515 Coll Ave, Manhattan, KS 66502 USA.
EM frank.arthur@ars.usda.gov
FU U. S. Department of Agriculture, National Institute of Food and
Agriculture (NIFA) [2011-51102-31125]; University of Arkansas
Agricultural Experiment Station
FX We thank B. Barnett of U.S. Department of Agriculture-Agricultural
Research Service (USDA-ARS) for technical assistance with the laboratory
study and for constructing the holding arenas used for the field study,
and also thank A. Cato, M. Bailey, S. Davis, B. Hale, R. Hampton, N.
Silva, and J. Wagner, at Arkansas State University for technical
assistance. This research was partially funded by the U. S. Department
of Agriculture, National Institute of Food and Agriculture (NIFA) Methyl
Bromide Transitions program (grant 2011-51102-31125) and the University
of Arkansas Agricultural Experiment Station.
NR 29
TC 3
Z9 3
U1 1
U2 5
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD APR
PY 2015
VL 108
IS 2
BP 811
EP 825
DI 10.1093/jee/tov015
PG 15
WC Entomology
SC Entomology
GA CJ1ZL
UT WOS:000355283600048
PM 26470194
ER
PT J
AU Crutcher, FK
Liu, JG
Puckhaber, LS
Stipanovic, RD
Bell, AA
Nichols, RL
AF Crutcher, Frankie K.
Liu, Jinggao
Puckhaber, Lorraine S.
Stipanovic, Robert D.
Bell, Alois A.
Nichols, Robert L.
TI FUBT, a putative MFS transporter, promotes secretion of fusaric acid in
the cotton pathogen Fusarium oxysporum f. sp vasinfectum
SO MICROBIOLOGY-SGM
LA English
DT Article
ID EFFLUX PUMP; SECONDARY METABOLISM; CERCOSPORA-KIKUCHII; GENE-CLUSTER;
PROTEIN; EXPRESSION; RESISTANCE; VIRULENCE; TOXIN; CELLS
AB Fusaric acid (FA) is a key component in virulence and symptom development in cotton during infection by Fusarium oxysporum. A putative major facilitator superfamily (MFS) transporter gene was identified downstream of the polyketide synthase gene responsible for the biosynthesis of FA in a region previously believed to be unrelated to the known FA gene cluster. Disruption of the transporter gene, designated FUBT, resulted in loss of FA secretion, decrease in FA production and a decrease in resistance to high concentrations of FA. Uptake of exogenous FA was unaffected in the disruption transformants, suggesting that FA enters the cell in Fusarium by an independent mechanism. Thus, FUBT is involved both in the extracellular transport of FA and in resistance of F. oxysporum to this non-specific toxin. A potential secondary resistance mechanism, the production of FA derivatives, was observed in FUBT deletion mutants. Molecular analysis of key biochemical processes in the production of FA could lead to future host plant resistance to Fusarium pathogens.
C1 [Crutcher, Frankie K.; Liu, Jinggao; Puckhaber, Lorraine S.; Stipanovic, Robert D.; Bell, Alois A.] USDA ARS, Southern Plains Agr Res Ctr, College Stn, TX 77845 USA.
[Nichols, Robert L.] Cotton Inc, Cary, NC 27513 USA.
RP Liu, JG (reprint author), USDA ARS, Southern Plains Agr Res Ctr, 2765 F&B Rd, College Stn, TX 77845 USA.
EM jinggao.liu@ars.usda.gov
FU Cotton Incorporated
FX We thank Cotton Incorporated for their partial support of this research
and Madeline Turnipseed for excellent technical support.
NR 32
TC 4
Z9 5
U1 4
U2 22
PU SOC GENERAL MICROBIOLOGY
PI READING
PA MARLBOROUGH HOUSE, BASINGSTOKE RD, SPENCERS WOODS, READING RG7 1AG,
BERKS, ENGLAND
SN 1350-0872
J9 MICROBIOL-SGM
JI Microbiology-(UK)
PD APR
PY 2015
VL 161
BP 875
EP 883
DI 10.1099/mic.0.000043
PN 4
PG 9
WC Microbiology
SC Microbiology
GA CJ3EQ
UT WOS:000355366600018
PM 25627440
ER
PT J
AU Creech, CF
Henry, RS
Fritz, BK
Kruger, GR
AF Creech, Cody F.
Henry, Ryan S.
Fritz, Bradley K.
Kruger, Greg R.
TI Influence of Herbicide Active Ingredient, Nozzle Type, Orifice Size,
Spray Pressure, and Carrier Volume Rate on Spray Droplet Size
Characteristics
SO WEED TECHNOLOGY
LA English
DT Article
DE Application; droplet size; herbicide; nozzle; spray solution
ID FLAT FAN NOZZLES; DRIFT; PERFORMANCE; ADJUVANTS; IMPACTION; SPECTRA;
SPEED
AB Recent concerns regarding herbicide spray drift, its subsequent effect on the surrounding environment, and herbicide efficacy have prompted applicators to focus on methods to reduce off-target movement of herbicides. Herbicide applications are complex processes, and as such, few studies have been conducted that consider multiple variables that affect the droplet spectrum of herbicide sprays. The objective of this study was to evaluate the effects of nozzle type, orifice size, herbicide active ingredient, pressure, and carrier volume on the droplet spectra of the herbicide spray. Droplet spectrum data were collected on 720 combinations of spray-application variables, which included six spray solutions (five herbicides and water alone), four carrier volumes, five nozzles, two orifice sizes, and three operating pressures. The laboratory study was conducted using a Sympatec laser diffraction instrument to determine the droplet spectrum characteristics of each treatment combination. When averaged over each main effect, nozzle type had the greatest effect on droplet size. Droplet size rankings for nozzles, ranked smallest to largest using volume median diameter (D-v0.5) values, were the XR, TT, AIXR, AI, and TTI nozzle with 176% change in D-v0.5 values from the XR to the TTI nozzle. On average, increasing the nozzle orifice size from a 11003 orifice to a 11005 increased the D-v0.5 values 8%. When compared with the water treatment, cloransulam (FirstRate) did not change the D-v0.5 value. Clethodim (Select Max), glyphosate (Roundup PowerMax), lactofen (Cobra), and glufosinate (Ignite) all reduced the D-v0.5 value 5, 11, 11, and 18%, respectively, when compared with water averaged over the other variables. Increasing the pressure of AIXR, TT, TTI, and XR nozzles from 138 to 276 kPa and the AI nozzle from 276 to 414 kPa decreased the D-v0.5 value 25%. Increasing the pressure from 276 to 414 kPa and from 414 to 552 kPa for the same nozzle group and AI nozzle decreased the D-v0.5 value 14%. Carrier volume had the least effect on the D-v0.5 value. Increasing the carrier volume from 47 to 187 L ha(-1) increased the D-v0.5 value 5%, indicating that droplet size of the herbicides tested were not highly dependent on delivery volume. The effect on droplet size of the variables examined in this study from greatest effect to least effect were nozzle, operating pressure, herbicide, nozzle orifice size, and carrier volume.
C1 [Creech, Cody F.; Henry, Ryan S.; Kruger, Greg R.] Univ Nebraska, West Cent Res & Extens Ctr, Dept Agron & Hort, North Platte, NE 69101 USA.
[Fritz, Bradley K.] USDA ARS, Southern Plains Agr Res Ctr, College Stn, TX 77845 USA.
RP Kruger, GR (reprint author), Univ Nebraska, West Cent Res & Extens Ctr, Dept Agron & Hort, North Platte, NE 69101 USA.
EM greg.kruger@unl.edu
FU Nebraska Soybean Board
FX The authors express their appreciation for the support received from
members of Dr. Kruger's laboratory in conducting this research. Annah
Geyer was instrumental in collecting data used for this experiment, and
we thank her for the assistance she provided. This work was generously
funded in part by the Nebraska Soybean Board, and we thank them for
their continued support of this work.
NR 36
TC 4
Z9 4
U1 3
U2 14
PU WEED SCI SOC AMER
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0890-037X
EI 1550-2740
J9 WEED TECHNOL
JI Weed Technol.
PD APR-JUN
PY 2015
VL 29
IS 2
BP 298
EP 310
DI 10.1614/WT-D-14-00049.1
PG 13
WC Agronomy; Plant Sciences
SC Agriculture; Plant Sciences
GA CJ2OT
UT WOS:000355325000014
ER
PT J
AU DeSiervo, MH
Jules, ES
Safford, HD
AF DeSiervo, Melissa H.
Jules, Erik S.
Safford, Hugh D.
TI Disturbance response across a productivity gradient: postfire vegetation
in serpentine and nonserpentine forests
SO ECOSPHERE
LA English
DT Article
DE disturbance; dynamic equilibrium model; fire ecology; fire severity;
intermediate disturbance hypothesis; mixed conifer forest; ordination;
productivity; serpentine; Sierra Nevada; ultramafic
ID SPECIES-RICHNESS; PLANT-COMMUNITIES; SIERRA-NEVADA; FIRE; DIVERSITY;
CALIFORNIA; SEVERITY; HETEROGENEITY; AVAILABILITY; FREQUENCY
AB Disturbances such as wildfire play a major role in the diversity, structure and composition of plant communities, however, little is known about the differential impacts of fire across landscapes that vary in characteristics such as soil nutrients and site productivity. Theory predicts that productivity can mediate the impacts of fire for reasons related to broad ecological processes and differential selective forces. For instance, ecosystems with lower site productivity are less limited by space and light and consequently experience less pronounced changes in these resources following a disturbance. Moreover, resource availability related to disturbance and productivity can affect the proportion of plants with competitive versus stress-tolerant life history strategies. In this study, we utilized a model system for testing predictions about productivity and disturbance that included a mixed conifer forest across a gradient of edaphically harsh, ultramafic "serpentine" soils and "nonserpentine" soils in the northern Sierra Nevada (California, USA). We predicted that the magnitude of fire effects on plant diversity from a 2008 wildfire would be positively related to productivity (higher on nonserpentine soils) and that these factors would interact as environmental filters driving post-fire species assemblage. In summer 2013 we established 90 vegetation plots in burned areas and 40 plots outside the fire perimeter as a proxy for pre-fire conditions. We found a unimodal relationship between species diversity and fire severity (peaking at low/moderate severity), and mild evidence post-fire changes were more pronounced on nonserpentine soils. In contrast, we found strong evidence that productivity and fire severity interact as drivers of species composition and functional traits with a higher proportion of resprouting shrubs on nonserpentine soils and, contrary to our prediction, more invaders on serpentine soils. We hypothesize that differences in biomass between serpentine and nonserpentine forests were not substantial enough to elicit a differential diversity response, possibly deriving from a weaker serpentine syndrome in this region that has been previously noted. Our study reveals that differences in productivity can mediate the outcome of disturbances in ways that cannot be detected through standard community diversity metrics, and that consideration of life history trait variation is necessary.
C1 [DeSiervo, Melissa H.; Jules, Erik S.] Humboldt State Univ, Dept Biol Sci, Arcata, CA 95521 USA.
[Safford, Hugh D.] USDA, Forest Serv, Vallejo, CA 94582 USA.
[Safford, Hugh D.] Univ Calif Davis, Dept Environm Sci & Policy, Davis, CA 95616 USA.
RP DeSiervo, MH (reprint author), Humboldt State Univ, Dept Biol Sci, Arcata, CA 95521 USA.
EM melissa.desiervo@humboldt.edu
FU USDA Forest Service Pacific Southwest Region; Plumas National Forest
FX We thank Dillon Davis, Maggie Mansfield, Tanner Harris, Luca Negoita,
Shawnee Gowan, Kyle Tibor and Erin Alvey for their assistance with
fieldwork and April Sahara, Lia Bottiani, Marissa Vossmer and Candace
Reynolds for their assistance with lab work. We also thank Kyle Merriam,
Michelle Coppoletta and Jim Belsher-Howe from the Plumas National Forest
for their support of this project; as well as Phil van Mangtem, Jeff
Kane and two anonymous reviewers for reviewing an earlier version of
this manuscript. This study was supported by the USDA Forest Service
Pacific Southwest Region, and the Plumas National Forest.
NR 59
TC 3
Z9 3
U1 42
U2 110
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 2150-8925
J9 ECOSPHERE
JI Ecosphere
PD APR
PY 2015
VL 6
IS 4
AR 60
DI 10.1890/ES14-00431.1
PG 19
WC Ecology
SC Environmental Sciences & Ecology
GA CI5EV
UT WOS:000354777300015
ER
PT J
AU Malone, SL
Keough, C
Staudhammer, CL
Ryan, MG
Parton, WJ
Olivas, P
Oberbauer, SF
Schedlbauer, J
Starr, G
AF Malone, Sparkle L.
Keough, Cynthia
Staudhammer, Christina L.
Ryan, Michael G.
Parton, William J.
Olivas, Paulo
Oberbauer, Steven F.
Schedlbauer, Jessica
Starr, Gregory
TI Ecosystem resistance in the face of climate change: a case study from
the freshwater marshes of the Florida Everglades
SO ECOSPHERE
LA English
DT Article
DE climate change; CO2 exchange rates; DAYCENT; ecosystem resistance; eddy
covariance; Florida Everglades
ID ELEVATED ATMOSPHERIC CO2; SOIL ORGANIC-MATTER; GLOBAL VEGETATION MODEL;
CARBON-DIOXIDE; PHOTOSYNTHETIC RESPONSE; CARBOXYLASE OXYGENASE; NITROGEN
NUTRITION; GAS EXCHANGES; UNITED-STATES; TEMPERATURE
AB Shaped by the hydrology of the Kissimmee-Okeechobee-Everglades watershed, the Florida Everglades is composed of a conglomerate of wetland ecosystems that have varying capacities to sequester and store carbon. Hydrology, which is a product of the region's precipitation and temperature patterns combined with water management policy, drives community composition and productivity. As shifts in both precipitation and air temperature are expected over the next 100 years as a consequence of climate change, CO2 dynamics in the greater Everglades are expected to change. To reduce uncertainties associated with climate change and to explore how projected changes in atmospheric CO2 concentration and climate can alter current CO2 exchange rates in Everglades freshwater marsh ecosystems, we simulated fluxes of carbon among the atmosphere, vegetation, and soil using the DAYCENT model. We explored the effects of low, moderate, and high scenarios for atmospheric CO2 (550, 850, and 950 ppm), mean annual air temperature (+1, +2.5, and +4.2 degrees C) and precipitation (-2, +7, and +14%), as predicted by the IPCC for the year 2100 for the region, on CO2 exchange rates in short- and long-hydroperiod wetland ecosystems. Under 100 years of current climate and atmospheric CO2 concentration, Everglades freshwater marsh ecosystems were estimated to be CO2-neutral. As atmospheric CO2 concentration increased and under climate change projections, there were slight shifts in the start and length of the wet season (-1 to +7 days) and a small enhancement in the sink capacity (by -169 to -573 g C m(-2) century(-1)) occurred at both short- and long-hydroperiod ecosystems compared to CO2 dynamics under the current climate regime. Over 100 years, rising temperatures increased net CO2 exchange rates (+1 to 13 g C m(-2) century(-1)) and shifts in precipitation patterns altered cumulative net carbon uptake by +13 to -46 g C m(-2) century(-1). While changes in ecosystem structure, species composition, and disturbance regimes were beyond the scope of this research, results do indicate that climate change will produce small changes in CO2 dynamics in Everglades freshwater marsh ecosystems and suggest that the hydrologic regime and oligotrophic conditions of Everglades freshwater marshes lowers the ecosystem sensitivity to climate change.
C1 [Malone, Sparkle L.; Staudhammer, Christina L.; Starr, Gregory] Univ Alabama, Dept Biol Sci, Tuscaloosa, AL 35487 USA.
[Malone, Sparkle L.; Ryan, Michael G.] US Forest Serv, Rocky Mt Res Stn, Ft Collins, CO 80526 USA.
[Keough, Cynthia; Ryan, Michael G.; Parton, William J.] Colorado State Univ, Nat Resource Ecol Lab, Ft Collins, CO 80523 USA.
[Olivas, Paulo; Oberbauer, Steven F.; Schedlbauer, Jessica] Florida Int Univ, Dept Biol Sci, Miami, FL 33199 USA.
[Schedlbauer, Jessica] W Chester Univ, Dept Biol, W Chester, PA 19383 USA.
RP Malone, SL (reprint author), Univ Alabama, Dept Biol Sci, Tuscaloosa, AL 35487 USA.
EM sparklelmalone@fs.fed.us
RI Ryan, Michael/A-9805-2008
OI Ryan, Michael/0000-0002-2500-6738
FU Department of Energy's (DOE) National Institute for Climate Change
Research (NICCR) [07-SC-NICCR-1059]; US Department of Education Graduate
Assistantships in Areas of National Need (GAANN) program; National
Science Foundation (NSF) Division of Atmospheric and Geospace Sciences
(AGS), Atmospheric Chemistry program [1233006]; NSF through the Florida
Coastal Everglades Long Term Ecological Research program [DBI-0620409,
DEB-9910514]; United States Forest Service Rocky Mountain Research
Station (RMRS)
FX This research is based in part on support from the Department of
Energy's (DOE) National Institute for Climate Change Research (NICCR)
through grant 07-SC-NICCR-1059, the US Department of Education Graduate
Assistantships in Areas of National Need (GAANN) program, and the
National Science Foundation (NSF) Division of Atmospheric and Geospace
Sciences (AGS), Atmospheric Chemistry program through grant 1233006.
This research was also supported by the NSF through the Florida Coastal
Everglades Long Term Ecological Research program under Cooperative
Agreements DBI-0620409 and DEB-9910514 and by the United States Forest
Service Rocky Mountain Research Station (RMRS). Any opinions, findings,
conclusions or recommendations expressed in this material are those of
the authors and do not necessarily reflect the views of the NSF, DOE, or
RMRS. Finally, the authors would like to recognize all those that have
advanced our predictive understanding of ecology, past, present and in
the future.
NR 127
TC 1
Z9 1
U1 10
U2 48
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 2150-8925
J9 ECOSPHERE
JI Ecosphere
PD APR
PY 2015
VL 6
IS 4
AR 57
DI 10.1890/ES14-00404.1
PG 23
WC Ecology
SC Environmental Sciences & Ecology
GA CI5EV
UT WOS:000354777300012
ER
PT J
AU Mateo-Sanchez, MC
Balkenhol, N
Cushman, S
Perez, T
Dominguez, A
Saura, S
AF Mateo-Sanchez, Maria C.
Balkenhol, Niko
Cushman, Sam
Perez, Trinidad
Dominguez, Ana
Saura, Santiago
TI Estimating effective landscape distances and movement corridors:
comparison of habitat and genetic data
SO ECOSPHERE
LA English
DT Article
DE circuit theory; connectivity; dispersal; habitat suitability; landscape
genetics; least-cost paths; resistance
ID BROWN BEAR SUBPOPULATIONS; URSUS-ARCTOS; RESISTANCE SURFACES; CANTABRIAN
RANGE; NORTHERN SPAIN; CIRCUIT-THEORY; ONE-MIGRANT; CONSERVATION;
DISPERSAL; CONNECTIVITY
AB Resistance models provide a key foundation for landscape connectivity analyses and are widely used to delineate wildlife corridors. Currently, there is no general consensus regarding the most effective empirical methods to parameterize resistance models, but habitat data (species' presence data and related habitat suitability models) and genetic data are the most widely used and advocated approaches. However, the practical consequences of applying one or the other approach have not been well studied. To address this knowledge gap, we performed a comparative study on the implications of using habitat suitability versus genetic data for determining effective landscape distances (a proxy inversely related to isolation among patches) based on least-cost and circuit-theoretic approaches, and for identifying potential movement corridors. For our comparison, we used data for the Cantabrian brown bear in Spain, an endangered population for which connectivity has been identified as a major conservation concern. Our results show that for brown bears, habitat models tend to overestimate resistance to movement through non-optimal areas, whereas genetic data yield higher estimates of effective distances within habitat areas. Therefore, our results suggest that (1) dispersal might be generally less constrained by landscape conditions than habitat utilization in home ranges, and that (2) dispersing animals might be more flexible in their movement behavior than residents are in their habitat resource utilization behavior, with records for residents dominating species occurrence data and subsequent habitat models. The assessed approaches provided dissimilar connectivity models with notable differences in patterns of predicted corridors across the study area, mainly due to differences in predicted connections between subpopulations. Our results highlight that the functional differences in habitat vs. genetic data, as well as the assumptions and potential limitations of different analytical approaches that use these data, need to be considered more carefully in connectivity modeling and subsequent corridor delineation.
C1 [Mateo-Sanchez, Maria C.; Saura, Santiago] Tech Univ Madrid, ETSI Montes Forestal & Medio Nat, Madrid 28040, Spain.
[Balkenhol, Niko] Univ Goettingen, Dept Wildlife Sci, D-337077 Gottingen, Germany.
[Cushman, Sam] US Forest Serv, Rocky Mt Res Stn, Flagstaff, AZ 86001 USA.
[Perez, Trinidad; Dominguez, Ana] Univ Oviedo, Dept Funct Biol, Oviedo 33006, Spain.
RP Mateo-Sanchez, MC (reprint author), Tech Univ Madrid, ETSI Montes Forestal & Medio Nat, Ciudad Univ S-N, Madrid 28040, Spain.
EM mc.mateo@upm.es
RI Dominguez, Ana/E-4412-2010; Perez, Trinidad/A-2861-2011; Saura,
Santiago/A-9994-2008;
OI Saura, Santiago/0000-0002-5239-0763; Dominguez-Sanjurjo,
Ana/0000-0002-8610-5553
FU Spanish Ministry of Science and Innovation through research grant GEFOUR
[AGL2012-31099]; Technical University of Madrid; DAAD
FX Funding was provided by the Spanish Ministry of Science and Innovation
through research grant GEFOUR (AGL2012-31099), Technical University of
Madrid and DAAD. We are also grateful to the Regional Administrations
involved in the brown bear management: Junta de Castilla y Leon,
Gobierno de Cantabria, Principado de Asturias and Xunta de Galicia for
providing data. Thanks also to the valuable support provided by
Fundacion Oso Pardo.
NR 59
TC 7
Z9 7
U1 7
U2 59
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 2150-8925
J9 ECOSPHERE
JI Ecosphere
PD APR
PY 2015
VL 6
IS 4
AR 59
DI 10.1890/ES14-00387.1
PG 16
WC Ecology
SC Environmental Sciences & Ecology
GA CI5EV
UT WOS:000354777300014
ER
PT J
AU Baxter, I
AF Baxter, Ivan
TI Should we treat the ionome as a combination of individual elements, or
should we be deriving novel combined traits?
SO JOURNAL OF EXPERIMENTAL BOTANY
LA English
DT Article
DE Elemental profiling; environment; GxE; genetics; ionomics; plant
nutrition
ID ARABIDOPSIS-THALIANA; MINERAL CONCENTRATIONS; METAL TRANSPORTER; YEAST
IONOME; RICE GRAIN; PROTEIN; ROOT; NUTRIENT; LOCI; IDENTIFICATION
AB It has been more than 10 years since the concept of the ionome, all of the mineral nutrients in a cell tissue or organism, was introduced. In the intervening years, ionomics, high throughput elemental profiling, has been used to analyse over 400 000 samples from at least 10 different organisms. There are now multiple published examples where an ionomics approach has been used to find genes of novel function, find lines or environments that produce foods with altered nutritional profiles, or define gene by environmental effects on elemental accumulation. In almost all of these studies, the ionome has been treated as a collection of independent elements, with the analysis repeated on each measured element. However, many elements share chemical properties, are known to interact with each other, or have been shown to have similar interactions with biological molecules. Accordingly, there is strong evidence from ionomic studies that the elements of the ionome do not behave independently and that combinations of elements should be treated as the phenotypes of interest. In this review, I will consider the evidence that we have for the interdependence of the ionome, some of its causes, methods for incorporating this interdependence into analyses and the benefits, drawbacks, and challenges of taking these approaches.
C1 USDA ARS, Plant Genet Res Unit, Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA.
RP Baxter, I (reprint author), USDA ARS, Plant Genet Res Unit, Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA.
EM ivan.baxter@ars.usda.gov
RI Baxter, Ivan/A-1052-2009
OI Baxter, Ivan/0000-0001-6680-1722
NR 36
TC 5
Z9 5
U1 5
U2 39
PU OXFORD UNIV PRESS
PI OXFORD
PA GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
SN 0022-0957
EI 1460-2431
J9 J EXP BOT
JI J. Exp. Bot.
PD APR
PY 2015
VL 66
IS 8
SI SI
BP 2127
EP 2131
DI 10.1093/jxb/erv040
PG 5
WC Plant Sciences
SC Plant Sciences
GA CH2ZN
UT WOS:000353895000002
PM 25711709
ER
PT J
AU Hancock, JF
Callow, PW
Mathey, MM
Mackey, T
Gunduz, K
Mookerjee, S
Cai, LC
Salnas, N
Bassil, NV
Hummer, KE
Finn, CE
AF Hancock, James F.
Callow, Peter W.
Mathey, Megan M.
Mackey, Ted
Gunduz, Kazim
Mookerjee, Sonali
Cai, Lichun
Salnas, Natalia
Bassil, Nahla V.
Hummer, Kim E.
Finn, Chad E.
TI Phenotypic variability in a panel of strawberry cultivars from North
America and the European Union
SO JOURNAL OF THE AMERICAN POMOLOGICAL SOCIETY
LA English
DT Article
DE flowering; fruit characteristics; plant characteristics; fruit chemistry
ID OCTOPLOID STRAWBERRY; ROSBREED; MARKERS; MAP
AB The phenotypic diversity in 96 antique and modern strawberry cultivars from the European Union and North America was evaluated in Michigan and Oregon, in 2011 and 2012. A total of thirty-five fruit and developmental characteristics were measured. Significant differences (p < 0.05) were observed among cultivars and environment for most of the characteristics, although only a few significant genotype x environment interactions were found. Several cultivars were superior for multiple traits including 'Aromas' from California (size, glossiness, crop load and weeks of flowering), 'Allstar from the Mid-Atlantic States (glossiness, firmness, drip loss and soluble solids concentration), 'Florida Radiance' (external color, skin strength, size, drip loss and acidity), 'Gorella' from the European Union (skin strength, internal color and soluble solids concentration) and 'Melody' from the European Union (external color, skin strength and drip loss). No antique cultivars carried superior traits that were not found in modem cultivars. The data in these trials will be combined with DNA diagnostic tests to identify genes of importance for strawberry breeding.
C1 [Hancock, James F.; Callow, Peter W.; Mookerjee, Sonali; Cai, Lichun] Michigan State Univ, Hort, E Lansing, MI 48824 USA.
[Mathey, Megan M.; Salnas, Natalia] Oregon State Univ, Dept Hort, Corvallis, OR 97331 USA.
[Mackey, Ted; Finn, Chad E.] ARS, USDA, Hort Corps Res Unit, Corvallis, OR 97330 USA.
[Gunduz, Kazim] Mustafa Kemal Univ, Fac Agr, Dept Hort, TR-31034 Antalya, Hatay, Turkey.
[Bassil, Nahla V.; Hummer, Kim E.] ARS, USDA, Natl Clonal Gcrmplasm Repository, Corvallis, OR 97333 USA.
RP Hancock, JF (reprint author), Michigan State Univ, Hort, 342 Plant & Soil Sci Bldg, E Lansing, MI 48824 USA.
FU USDA-NIFA-Specialty Crop Research [2009-51181-05808]
FX "RosBREED: Enabling marker-assisted breeding in Rosaceae" is supported
by the USDA-NIFA-Specialty Crop Research Initiative by a combination of
federal and matching funds (grant number 2009-51181-05808).
NR 20
TC 0
Z9 0
U1 3
U2 12
PU AMER POMOLOGICAL SOC
PI UNIVERSITY PK
PA 102 TYSON BUILDING, UNIVERSITY PK, PA 16802 USA
SN 1527-3741
J9 J AM POMOL SOC
JI J. Amer. Pomolog. Soc.
PD APR
PY 2015
VL 69
IS 2
BP 85
EP 101
PG 17
WC Agronomy; Horticulture
SC Agriculture
GA CH9DY
UT WOS:000354337400003
ER
PT J
AU Hyun, DY
Lee, GA
Kang, MJ
Burkart-Waco, D
Kim, SI
Kim, JY
Lee, MC
Gwag, JG
Kim, YG
Tai, TH
AF Hyun, Do Yoon
Lee, Gi An
Kang, Man Jung
Burkart-Waco, Diana
Kim, Sang Ic
Kim, Jae Yoon
Lee, Myung Chul
Gwag, Jae Gyun
Kim, Yeon Gyu
Tai, Thomas H.
TI Development of low-temperature germinability markers for evaluation of
rice (Oryza sativa L.) germplasm
SO MOLECULAR BREEDING
LA English
DT Article
DE Low-temperature germinability; Rice; Quantitative trait loci; Marker;
Association analysis
ID QUANTITATIVE TRAIT LOCUS; COLD TOLERANCE; QTL ANALYSIS; GERMINATION;
ASSOCIATION; QLTG3-1; GENES; VIGOR; STAGE; SNP
AB Low-temperature germinability (LTG) is an important trait for breeding of varieties for use in direct-seeding rice production systems. Although rice (Oryza sativa L.) is generally sensitive to low temperatures, genetic variation for LTG exists and several quantitative trait loci (QTLs) have been reported. Most notably, the gene underlying the major effect QTL qLTG3-1 has been cloned and implicated in tissue weakening. The objective of this study was to develop molecular markers for use in selecting rice germplasm with enhanced LTG. A panel of japonica rice accessions (n = 180) from temperate regions in Asia was evaluated for LTG and genotyped with markers from qLTG3-1 and regions previously reported to harbor other LTG QTLs. In addition to the germplasm evaluation using these markers, an association analysis was conducted using SNP data generated by reduced representation sequencing of the panel. Eight SNP markers were found to be significantly associated with LTG using general and mixed linear models. Two of these markers were in close proximity (similar to 35 kb) to each other on chromosome 4 in a region previously linked to LTG in rice. The identification of several markers strongly associated with LTG in locations not previously reported provides a foundation for further genetic dissection of this complex trait.
C1 [Hyun, Do Yoon; Lee, Gi An; Kang, Man Jung; Lee, Myung Chul; Gwag, Jae Gyun; Kim, Yeon Gyu] RDA, Natl Acad Agr Sci, Natl Agrobiodivers Ctr, Jeonju, South Korea.
[Burkart-Waco, Diana; Tai, Thomas H.] USDA ARS, Crops Pathol & Genet Res Unit, Davis, CA 95616 USA.
[Burkart-Waco, Diana; Kim, Sang Ic; Tai, Thomas H.] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[Kim, Jae Yoon] Korea Univ, Div Biotechnol, Seoul, South Korea.
RP Tai, TH (reprint author), Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
EM Thomas.Tai@ars.usda.gov
FU Rural Development Administration (RDA) of the Republic of Korea through
RDA/USDA-ARS Virtual Laboratory program; National Academy of
Agricultural Science, RDA [PJ008368, PJ010871]; USDA-ARS CRIS
[5306-21000-021-00D]; NIH [S10RR029668, S10RR027303]
FX This work was supported by the Rural Development Administration (RDA) of
the Republic of Korea through the RDA/USDA-ARS Virtual Laboratory
program (D.Y.H. and T.H.T.) and by the "Research Program for
Agricultural Science & Technology Development (Project No. PJ008368 and
PJ010871)" of the National Academy of Agricultural Science, RDA (D.Y.H).
Additional support was provided by USDA-ARS CRIS Project
5306-21000-021-00D (T.H.T.). This work used the Vincent J. Coates
Genomics Sequencing Laboratory at UC Berkeley, supported by NIH S10
Instrumentation Grants S10RR029668 and S10RR027303.
NR 43
TC 1
Z9 1
U1 6
U2 27
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 1380-3743
EI 1572-9788
J9 MOL BREEDING
JI Mol. Breed.
PD APR
PY 2015
VL 35
IS 4
AR 104
DI 10.1007/s11032-015-0298-1
PG 16
WC Agronomy; Plant Sciences; Genetics & Heredity; Horticulture
SC Agriculture; Plant Sciences; Genetics & Heredity
GA CI0DV
UT WOS:000354407200005
ER
PT J
AU Labate, JA
Robertson, LD
AF Labate, Joanne A.
Robertson, Larry D.
TI Nucleotide diversity estimates of tomatillo (Physalis philadelphica)
accessions including nine new inbred lines
SO MOLECULAR BREEDING
LA English
DT Article
DE Husk tomato; Germplasm; Single nucleotide polymorphism; Genotyping by
sequencing; Population genetics; Isolation by distance
ID GENETIC-STRUCTURE; IXOCARPA; TOMATOES; TREES
AB To help support utilization of germplasm resources for tomatillo (Physalis philadelphica) crop improvement, we characterized genetic diversity in the National Plant Germplasm System collection. Genotyping by sequencing, a method of high-throughput DNA sequencing of reduced representation genomic libraries, was performed on 190 plant samples. This yielded 77,340 high-quality filtered single nucleotide polymorphisms from 179 plants sampled from 125 accessions. Geographical information systems data on geospatial references were verified using web-and PC-based software tools. We found that multiple plants sampled per accession were closely related to each other, but there was no apparent pattern related to original sampling location with respect to state in Mexico. There was no evidence for isolation by distance in a 15-accession, 53 plant geodiversity panel. Average proportion of heterozygous sites was halved in samples from nine inbred lines relative to samples from open-pollinated accessions (0.04 vs. 0.08). The genetic characterization of these accessions can help end users choose germplasm to support increased production of fresh and processed tomatillo products for expanding niche markets.
C1 [Labate, Joanne A.; Robertson, Larry D.] ARS, Plant Genet Resources Unit, USDA, Geneva, NY 14456 USA.
RP Labate, JA (reprint author), ARS, Plant Genet Resources Unit, USDA, 630 W North St, Geneva, NY 14456 USA.
EM joanne.labate@ars.usda.gov
FU CRIS [1910-21000-024-00D]; Microsoft Corporation
FX We thank Susan M. Sheffer, William Garman, Jonathan Spencer, Paul Kisly,
Sherri Tennies and Bob Nearpass for their assistance and excellent
technical support. Sharon Mitchell and Robert Bukowski (Cornell
University) performed and analyzed the spike-in experiment to verify
library optimization. USDA is an equal opportunity provider and
employer. The use of trade, firm or corporation names in this
publication is for the information and convenience of the reader. Such
use does not constitute an official endorsement or approval by the
United States Department of Agriculture or the Agricultural Research
Service of any product or service to the exclusion of others that may be
suitable. This research was supported by CRIS Project No.
1910-21000-024-00D. Part of this work was carried out using the
resources of the Computational Biology Service Unit from Cornell
University which is partially funded by Microsoft Corporation.
NR 50
TC 1
Z9 1
U1 4
U2 13
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 1380-3743
EI 1572-9788
J9 MOL BREEDING
JI Mol. Breed.
PD APR
PY 2015
VL 35
IS 4
AR 106
DI 10.1007/s11032-015-0302-9
PG 10
WC Agronomy; Plant Sciences; Genetics & Heredity; Horticulture
SC Agriculture; Plant Sciences; Genetics & Heredity
GA CI0DV
UT WOS:000354407200008
ER
PT J
AU Zurn, JD
Newcomb, M
Rouse, MN
Jin, Y
Chao, SM
Sthapit, J
See, DR
Wanyera, R
Njau, P
Bonman, JM
Brueggeman, R
Acevedo, M
AF Zurn, Jason D.
Newcomb, Maria
Rouse, Matthew N.
Jin, Yue
Chao, Shiaoman
Sthapit, Jinita
See, Deven R.
Wanyera, Ruth
Njau, Peter
Bonman, J. Michael
Brueggeman, Robert
Acevedo, Maricelis
TI High-density mapping of a resistance gene to Ug99 from the Iranian
landrace PI 626573 (vol 34, pg 871, 2014)
SO MOLECULAR BREEDING
LA English
DT Correction
C1 [Zurn, Jason D.; Brueggeman, Robert; Acevedo, Maricelis] N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58108 USA.
[Newcomb, Maria; Rouse, Matthew N.; Jin, Yue] USDA ARS, Cereal Dis Lab, St Paul, MN 55108 USA.
[Chao, Shiaoman] USDA ARS, Cereal Crops Res Unit, Fargo, ND 58102 USA.
[Sthapit, Jinita] Washington State Univ, Dept Plant Pathol, Pullman, WA 99164 USA.
[See, Deven R.] Washington State Univ, USDA ARS, Wheat Genet, Wheat Genet Qual Physiol & Dis Res Unit, Pullman, WA 99164 USA.
[Wanyera, Ruth; Njau, Peter] Kenya Agr Res Inst, Njoro, Kenya.
[Bonman, J. Michael] USDA ARS, Small Grains & Potato Germplasm Res Unit, Aberdeen, ID 83210 USA.
RP Acevedo, M (reprint author), N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58108 USA.
EM Maricelis.Acevedo@ndsu.edu
RI Rouse, Matthew/G-5474-2011
NR 1
TC 0
Z9 0
U1 0
U2 3
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 1380-3743
EI 1572-9788
J9 MOL BREEDING
JI Mol. Breed.
PD APR
PY 2015
VL 35
IS 4
AR 109
DI 10.1007/s11032-015-0303-8
PG 1
WC Agronomy; Plant Sciences; Genetics & Heredity; Horticulture
SC Agriculture; Plant Sciences; Genetics & Heredity
GA CI0DV
UT WOS:000354407200009
ER
PT J
AU Wang, DG
Brewster, JD
Paul, M
Tomasula, PM
AF Wang, De-Guo
Brewster, Jeffrey D.
Paul, Moushumi
Tomasula, Peggy M.
TI Two Methods for Increased Specificity and Sensitivity in Loop-Mediated
Isothermal Amplification
SO MOLECULES
LA English
DT Article
DE loop-mediated isothermal amplification (LAMP); non-specific
amplification; dimethyl sulfoxide (DMSO); Touchdown LAMP
ID DNA AMPLIFICATION; ENZYMATIC AMPLIFICATION; RAPID DETECTION; TOUCHDOWN
PCR; IDENTIFICATION; POLYMERASE; VIRUS; LAMP
AB The technique of loop-mediated isothermal amplification (LAMP) utilizes four (or six) primers targeting six (or eight) regions within a fairly small segment of a genome for amplification, with concentration higher than that used in traditional PCR methods. The high concentrations of primers used leads to an increased likelihood of non-specific amplification induced by primer dimers. In this study, a set of LAMP primers were designed targeting the prfA gene sequence of Listeria monocytogenes, and dimethyl sulfoxide (DMSO) as well as Touchdown LAMP were employed to increase the sensitivity and specificity of the LAMP reactions. The results indicate that the detection limit of this novel LAMP assay with the newly designed primers and additives was 10 fg per reaction, which is ten-fold more sensitive than a commercial Isothermal Amplification Kit and hundred-fold more sensitive than previously reported LAMP assays. This highly sensitive LAMP assay has been shown to detect 11 strains of Listeria monocytogenes, and does not detect other Listeria species (including Listeria innocua and Listeria invanovii), providing some advantages in specificity over commercial Isothermal Amplification Kits and previously reported LAMP assay.
C1 [Wang, De-Guo] Xuchang Univ, Henan Postdoctoral Res Base, Food & Bioengn Coll, Xuchang 461000, Peoples R China.
[Brewster, Jeffrey D.; Paul, Moushumi; Tomasula, Peggy M.] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
RP Wang, DG (reprint author), Xuchang Univ, Henan Postdoctoral Res Base, Food & Bioengn Coll, Xuchang 461000, Peoples R China.
EM wangdg666@126.com; Jeffrey.Brewster@ARS.USDA.GOV;
Moushumi.Paul@ARS.USDA.GOV; Peggy.Tomasula@ARS.USDA.GOV
FU Natural Science Foundation of China [31172331]; NSFC-Henan Talent
Training Joint Foundation [U1204330]; Project for Scientific Research
and Innovation Team of Henan Universities [15IRTSTHN016]; Foundation of
Henan Province for Excellent Young Teachers of Colleges and Universities
[2012GGJS-172]; Xuchang University for Outstanding Young Backbone
Teachers; Training Project for Outstanding Youth Backbone Personnel of
Xuchang University
FX The authors would like to acknowledge the China Scholarship Council.
This work was supported by Natural Science Foundation of China
(31172331), NSFC-Henan Talent Training Joint Foundation (U1204330),
Project for Scientific Research and Innovation Team of Henan
Universities (15IRTSTHN016), Foundation of Henan Province for Excellent
Young Teachers of Colleges and Universities (2012GGJS-172), Project of
Xuchang University for Outstanding Young Backbone Teachers, and Training
Project for Outstanding Youth Backbone Personnel of Xuchang University.
NR 29
TC 8
Z9 8
U1 1
U2 20
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1420-3049
J9 MOLECULES
JI Molecules
PD APR
PY 2015
VL 20
IS 4
BP 6048
EP 6059
DI 10.3390/molecules20046048
PG 12
WC Chemistry, Organic
SC Chemistry
GA CI1DE
UT WOS:000354480700049
PM 25853320
ER
PT J
AU Cole, MR
Hobden, JA
Warner, IM
AF Cole, Marsha R.
Hobden, Jeffery A.
Warner, Isiah M.
TI Recycling Antibiotics into GUMBOS: A New Combination Strategy to Combat
Multi-Drug-Resistant Bacteria
SO MOLECULES
LA English
DT Article
DE chlorhexidine; -lactam antibiotic; multi-drug resistant; GUMBOS;
combination drug therapy; ion pair; antibacterial; synergy
ID GRAM-NEGATIVE INFECTIONS; OUTER-MEMBRANE; IONIC LIQUIDS; THERAPY;
EVOLUTION; EFFICACY; SOCIETY; SEPSIS
AB The emergence of multi-drug-resistant bacteria, coupled with the lack of new antibiotics in development, is fast evolving into a global crisis. New strategies utilizing existing antibacterial agents are urgently needed. We propose one such strategy in which four outmoded -lactam antibiotics (ampicillin, carbenicillin, cephalothin and oxacillin) and a well-known antiseptic (chlorhexidine di-acetate) were fashioned into a group of uniform materials based on organic salts (GUMBOS) as an alternative to conventional combination drug dosing strategies. The antibacterial activity of precursor ions (e.g., chlorhexidine diacetate and -lactam antibiotics), GUMBOS and their unreacted mixtures were studied with 25 clinical isolates with varying antibiotic resistance using a micro-broth dilution method. Acute cytotoxicity and therapeutic indices were determined using fibroblasts, endothelial and cervical cell lines. Intestinal permeability was predicted using a parallel artificial membrane permeability assay. GUMBOS formed from ineffective -lactam antibiotics and cytotoxic chlorhexidine diacetate exhibited unique pharmacological properties and profound antibacterial activity at lower concentrations than the unreacted mixture of precursor ions at equivalent stoichiometry. Reduced cytotoxicity to invasive cell types commonly found in superficial and chronic wounds was also observed using GUMBOS. GUMBOS show promise as an alternative combination drug strategy for treating wound infections caused by drug-resistant bacteria.
C1 [Cole, Marsha R.] ARS, Commod Utilizat, So Reg Res Ctr, USDA, New Orleans, LA 70124 USA.
[Hobden, Jeffery A.] Louisiana State Univ, Med Ctr, Dept Microbiol Immunol & Parasitol, New Orleans, LA 70112 USA.
[Warner, Isiah M.] Louisiana State Univ, Dept Chem, Baton Rouge, LA 70803 USA.
RP Cole, MR (reprint author), ARS, Commod Utilizat, So Reg Res Ctr, USDA, New Orleans, LA 70124 USA.
EM marsha.cole@ars.usda.gov; jhobde@lsuhsc.edu; iwarner@lsu.edu
FU United States Department of Agriculture (USDA) Cooperative State
Research, Education and Extension Service; National Institutes of Health
[R01 GM79670]; National Science Foundation [CHE-1307611]
FX The authors thank Brian Harrington and Demetria Henry for their
assistance in the microbiological studies. Additionally, we thank Karen
McDonough for assistance in cytotoxicity studies. Hobden is a member of
the Louisiana State University Musculoskeletal Scientific Research
Consortium. This research was supported in part by a grant from the
United States Department of Agriculture (USDA) Cooperative State
Research, Education and Extension Service; the National Institutes of
Health (Grant No. R01 GM79670); and the National Science Foundation
(Grant No. CHE-1307611).
NR 39
TC 4
Z9 4
U1 6
U2 14
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1420-3049
J9 MOLECULES
JI Molecules
PD APR
PY 2015
VL 20
IS 4
BP 6466
EP 6487
DI 10.3390/molecules20046466
PG 22
WC Chemistry, Organic
SC Chemistry
GA CI1DE
UT WOS:000354480700076
PM 25867831
ER
PT J
AU Cunniffe, NJ
Stutt, ROJH
DeSimone, RE
Gottwald, TR
Gilligan, CA
AF Cunniffe, Nik J.
Stutt, Richard O. J. H.
DeSimone, R. Erik
Gottwald, Tim R.
Gilligan, Christopher A.
TI Optimising and Communicating Options for the Control of Invasive Plant
Disease When There Is Epidemiological Uncertainty
SO PLOS COMPUTATIONAL BIOLOGY
LA English
DT Article
ID CITRUS CANKER EPIDEMIC; GLOBAL FOOD SECURITY; INFECTIOUS-DISEASES;
CONTROL STRATEGIES; ERADICATION ZONE; HOST-RESISTANCE; SPREAD;
LANDSCAPE; FLORIDA; MODELS
AB Although local eradication is routinely attempted following introduction of disease into a new region, failure is commonplace. Epidemiological principles governing the design of successful control are not well-understood. We analyse factors underlying the effectiveness of reactive eradication of localised outbreaks of invading plant disease, using citrus canker in Florida as a case study, although our results are largely generic, and apply to other plant pathogens (as we show via our second case study, citrus greening). We demonstrate how to optimise control via removal of hosts surrounding detected infection (i.e. localised culling) using a spatially-explicit, stochastic epidemiological model. We show how to define optimal culling strategies that take account of stochasticity in disease spread, and how the effectiveness of disease control depends on epidemiological parameters determining pathogen infectivity, symptom emergence and spread, the initial level of infection, and the logistics and implementation of detection and control. We also consider how optimal culling strategies are conditioned on the levels of risk acceptance/aversion of decision makers, and show how to extend the analyses to account for potential larger-scale impacts of a small-scale outbreak. Control of local outbreaks by culling can be very effective, particularly when started quickly, but the optimum strategy and its performance are strongly dependent on epidemiological parameters (particularly those controlling dispersal and the extent of any cryptic infection, i.e. infectious hosts prior to symptoms), the logistics of detection and control, and the level of local and global risk that is deemed to be acceptable. A version of the model we developed to illustrate our methodology and results to an audience of stakeholders, including policy makers, regulators and growers, is available online as an interactive, user-friendly interface at http://www.webidemics.com/. This version of our model allows the complex epidemiological principles that underlie our results to be communicated to a non-specialist audience.
C1 [Cunniffe, Nik J.; Stutt, Richard O. J. H.; DeSimone, R. Erik; Gilligan, Christopher A.] Univ Cambridge, Dept Plant Sci, Cambridge, England.
[Gottwald, Tim R.] ARS, USDA, Ft Pierce, FL USA.
RP Cunniffe, NJ (reprint author), Univ Cambridge, Dept Plant Sci, Cambridge, England.
EM njc1001@cam.ac.uk
OI Cunniffe, Nik/0000-0002-3533-8672
FU USDA-ARS; USDA-Aphis; BBSRC; Defra; BBSRC Professorial Fellowship
FX The authors gratefully acknowledge funding from USDA-ARS, USDA-Aphis,
BBSRC and Defra. CAG also acknowledges support of a BBSRC Professorial
Fellowship. The funders had no role in study design, data collection and
analysis, decision to publish, or preparation of the manuscript.
NR 51
TC 5
Z9 5
U1 5
U2 18
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1553-734X
EI 1553-7358
J9 PLOS COMPUT BIOL
JI PLoS Comput. Biol.
PD APR
PY 2015
VL 11
IS 4
AR e1004211
DI 10.1371/journal.pcbi.1004211
PG 24
WC Biochemical Research Methods; Mathematical & Computational Biology
SC Biochemistry & Molecular Biology; Mathematical & Computational Biology
GA CI1PX
UT WOS:000354517600052
PM 25874622
ER
PT J
AU Clark, MP
Nijssen, B
Lundquist, JD
Kavetski, D
Rupp, DE
Woods, RA
Freer, JE
Gutmann, ED
Wood, AW
Gochis, DJ
Rasmussen, RM
Tarboton, DG
Mahat, V
Flerchinger, GN
Marks, DG
AF Clark, Martyn P.
Nijssen, Bart
Lundquist, Jessica D.
Kavetski, Dmitri
Rupp, David E.
Woods, Ross A.
Freer, Jim E.
Gutmann, Ethan D.
Wood, Andrew W.
Gochis, David J.
Rasmussen, Roy M.
Tarboton, David G.
Mahat, Vinod
Flerchinger, Gerald N.
Marks, Danny G.
TI A unified approach for process-based hydrologic modeling: 2. Model
implementation and case studies
SO WATER RESOURCES RESEARCH
LA English
DT Article
DE unified model; scaling behavior; hydrometeorology
ID DYNAMIC TOPMODEL; SURFACE-ENERGY; PART I; THERMAL-CONDUCTIVITY;
RADIATIVE-TRANSFER; SNOW INTERCEPTION; SIMULTANEOUS HEAT; SUBSURFACE
FLOW; FOREST CANOPIES; SPECTRAL ALBEDO
AB This work advances a unified approach to process-based hydrologic modeling, which we term the Structure for Unifying Multiple Modeling Alternatives (SUMMA). The modeling framework, introduced in the companion paper, uses a general set of conservation equations with flexibility in the choice of process parameterizations (closure relationships) and spatial architecture. This second paper specifies the model equations and their spatial approximations, describes the hydrologic and biophysical process parameterizations currently supported within the framework, and illustrates how the framework can be used in conjunction with multivariate observations to identify model improvements and future research and data needs. The case studies illustrate the use of SUMMA to select among competing modeling approaches based on both observed data and theoretical considerations. Specific examples of preferable modeling approaches include the use of physiological methods to estimate stomatal resistance, careful specification of the shape of the within-canopy and below-canopy wind profile, explicitly accounting for dust concentrations within the snowpack, and explicitly representing distributed lateral flow processes. Results also demonstrate that changes in parameter values can make as much or more difference to the model predictions than changes in the process representation. This emphasizes that improvements in model fidelity require a sagacious choice of both process parameterizations and model parameters. In conclusion, we envisage that SUMMA can facilitate ongoing model development efforts, the diagnosis and correction of model structural errors, and improved characterization of model uncertainty.
C1 [Clark, Martyn P.; Gutmann, Ethan D.; Wood, Andrew W.; Gochis, David J.; Rasmussen, Roy M.] Natl Ctr Atmospher Res, Hydrometeorol Applicat Program, Res Applicat Lab, Boulder, CO 80307 USA.
[Nijssen, Bart; Lundquist, Jessica D.] Univ Washington, Dept Civil & Environm Engn, Seattle, WA 98195 USA.
[Kavetski, Dmitri] Univ Adelaide, Sch Civil Environm & Min Engn, Adelaide, SA, Australia.
[Rupp, David E.] Oregon State Univ, Coll Earth Ocean & Atmospher Sci, Oregon Climate Change Res Inst, Corvallis, OR 97331 USA.
[Woods, Ross A.] Univ Bristol, Fac Engn, Bristol, Avon, England.
[Freer, Jim E.] Univ Bristol, Sch Geog Sci, Bristol, Avon, England.
[Tarboton, David G.] Utah State Univ, Dept Civil & Environm Engn, Utah Water Res Lab, Logan, UT 84322 USA.
[Mahat, Vinod] Colorado State Univ, Dept Civil & Environm Engn, Ft Collins, CO 80523 USA.
[Flerchinger, Gerald N.; Marks, Danny G.] USDA ARS, Northwest Watershed Res Ctr, Boise, ID 83712 USA.
RP Clark, MP (reprint author), Natl Ctr Atmospher Res, Hydrometeorol Applicat Program, Res Applicat Lab, POB 3000, Boulder, CO 80307 USA.
EM mclark@ucar.edu
RI Woods, Ross/C-6696-2013; Freer, Jim/C-7335-2009; Clark,
Martyn/A-5560-2015; Rupp, David/G-8171-2014; Nijssen, Bart/B-1013-2012;
Gutmann, Ethan/I-5728-2012;
OI Woods, Ross/0000-0002-5732-5979; Clark, Martyn/0000-0002-2186-2625;
Nijssen, Bart/0000-0002-4062-0322; Gutmann, Ethan/0000-0003-4077-3430;
Tarboton, David/0000-0002-1998-3479
FU U.S. Army Corps of Engineers; National Oceanic and Atmospheric
Administration (NOAA) Modeling Analysis Predictions and Projections
(MAPP) program [R4310142]; National Science Foundation [EAR-1215809]
FX We thank Mary Hill, Michael Barlage, Fei Chen, David Lawrence, and Sean
Swenson for comments on an earlier draft of this manuscript, and Cindy
Halley-Gotway and Kevin Sampson for their help in producing the figures
for the paper. We thank the three anonymous reviewers and Keith Beven
for their detailed and constructive comments that substantially improved
the manuscript. This work was supported through a contract with the U.S.
Army Corps of Engineers, through a Cooperative Agreement with the Bureau
of Reclamation, through a grant from the National Oceanic and
Atmospheric Administration (NOAA) Modeling Analysis Predictions and
Projections (MAPP) program (R4310142), and through a grant from the
National Science Foundation (EAR-1215809). The data used in this study
are available from the authors upon request.
NR 114
TC 26
Z9 26
U1 5
U2 42
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0043-1397
EI 1944-7973
J9 WATER RESOUR RES
JI Water Resour. Res.
PD APR
PY 2015
VL 51
IS 4
BP 2515
EP 2542
DI 10.1002/2015WR017200
PG 28
WC Environmental Sciences; Limnology; Water Resources
SC Environmental Sciences & Ecology; Marine & Freshwater Biology; Water
Resources
GA CI4PH
UT WOS:000354733500037
ER
PT J
AU Guo, JQ
Riggins, CW
Hausman, NE
Hager, AG
Riechers, DE
Davis, AS
Tranel, PJ
AF Guo, Jiaqi
Riggins, Chance W.
Hausman, Nicholas E.
Hager, Aaron G.
Riechers, Dean E.
Davis, Adam S.
Tranel, Patrick J.
TI Nontarget-Site Resistance to ALS Inhibitors in Waterhemp (Amaranthus
tuberculatus)
SO WEED SCIENCE
LA English
DT Article
DE Herbicide metabolism; herbicide resistance; malathion; resistance
mechanisms; common waterhemp; tall waterhemp
ID CONFER HERBICIDE RESISTANCE; ACETOLACTATE-SYNTHASE; MULTIPLE RESISTANCE;
BIOTYPE; ETHAMETSULFURON; TRANSCRIPTOME; POPULATION; MUTATIONS;
POWELLII; ATRAZINE
AB A waterhemp population (MCR) previously characterized as resistant to 4-hydroxyphenylpyruvate dioxygenase and photosystem II inhibitors demonstrated both moderate and high levels of resistance to acetolactate synthase (ALS) inhibitors. Plants from the MCR population exhibiting high resistance to ALS inhibitors contained the commonly found Trp574Leu ALS amino acid substitution, whereas plants with only moderate resistance did not have this substitution. A subpopulation (JG11) was derived from the MCR population in which the moderate-resistance trait was isolated from the Trp574Leu mutation. Results from DNA sequencing and ALS enzyme assays demonstrated that resistance to ALS inhibitors in the JG11 population was not due to an altered site of action. This nontarget-site ALS-inhibitor resistance was characterized with whole-plant dose-response experiments using herbicides from each of the five commercialized families of ALS-inhibiting herbicides. Resistance ratios ranging from 3 to 90 were obtained from the seven herbicides evaluated. Nontarget-site resistance to ALS has been rarely documented in eudicot weeds, and adds to the growing list of resistance traits evolved in waterhemp.
C1 [Guo, Jiaqi; Riggins, Chance W.; Hausman, Nicholas E.; Hager, Aaron G.; Riechers, Dean E.; Tranel, Patrick J.] Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
[Davis, Adam S.] USDA ARS, Urbana, IL 61801 USA.
RP Tranel, PJ (reprint author), Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
EM tranel@illinois.edu
FU Syngenta Crop Protection
FX This research was supported by Syngenta Crop Protection.
NR 29
TC 5
Z9 5
U1 5
U2 25
PU WEED SCI SOC AMER
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0043-1745
EI 1550-2759
J9 WEED SCI
JI Weed Sci.
PD APR-JUN
PY 2015
VL 63
IS 2
BP 399
EP 407
DI 10.1614/WS-D-14-00139.1
PG 9
WC Agronomy; Plant Sciences
SC Agriculture; Plant Sciences
GA CI7VU
UT WOS:000354973700004
ER
PT J
AU Poffenbarger, HJ
Mirsky, SB
Teasdale, JR
Spargo, JT
Cavigelli, MA
Kramer, M
AF Poffenbarger, Hanna J.
Mirsky, Steven B.
Teasdale, John R.
Spargo, John T.
Cavigelli, Michel A.
Kramer, Matthew
TI Nitrogen Competition between Corn and Weeds in Soils under Organic and
Conventional Management
SO WEED SCIENCE
LA English
DT Article
DE De Wit replacement series; overyielding; resource partitioning
ID INTERSPECIFIC COMPETITION; SWEET CORN; ADDITIVE DESIGNS; CROPPING
SYSTEMS; GRAIN PRODUCTION; CRIMSON CLOVER; WINTER-WHEAT; FERTILIZER;
GROWTH; REPLACEMENT
AB Crop yields can be similar in organic and conventional systems even when weed biomass is greater in organic systems. Greater weed tolerance in organic systems may be due to differences in management-driven soil fertility properties. The goal of this experiment was to determine whether soil collected from a long-term organic cropping system with a diverse crop rotation and organic fertility inputs would support higher soil nitrogen (N) resource partitioning, as indicated by overyielding of corn-weed mixtures, than a cropping system with a less diverse crop rotation and inorganic N inputs. A replacement series greenhouse experiment was conducted using corn : smooth pigweed and corn : giant foxtail proportions of 0 : 1, 0.25 : 0.75, 0.5 : 0.5, 0.75 : 0.25, and 1 : 0 and harvested at 29, 40, or 48 d after experiment initiation (DAI). The monoculture density of corn was 4 plants pot 21 and the monoculture density of each weed species was 36 plants pot(-1). Corn was consistently more competitive than both weed species at 40 and 48 DAI when soil inorganic N was limiting to growth. Corn-smooth pigweed mixtures had greater shoot biomass and shoot N content than expected based on the shoot biomass and shoot N content of monocultures (i.e., overyielding) at the onset of soil inorganic N limitation, providing some evidence for N resource partitioning. However, soil management effects on overyielding were infrequent and inconsistent among harvest dates and corn-weed mixtures, leading us to conclude that management-driven soil fertility properties did not affect corn-weed N resource partitioning during the early stages of corn growth.
C1 [Poffenbarger, Hanna J.] Univ Maryland, Environm Sci & Technol Dept, College Pk, MD 20742 USA.
[Mirsky, Steven B.; Teasdale, John R.; Cavigelli, Michel A.] USDA ARS, Sustainable Agr Syst Lab, Beltsville, MD 20705 USA.
[Spargo, John T.] Penn State Univ, Coll Agr Sci, Agr Analyt Serv Lab, University Pk, PA 16802 USA.
[Kramer, Matthew] USDA ARS, Biometr Consulting Serv, Beltsville, MD 20705 USA.
RP Mirsky, SB (reprint author), USDA ARS, Sustainable Agr Syst Lab, Bldg 001 BARC West,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM steven.mirsky@usda.ars.gov
NR 66
TC 1
Z9 1
U1 7
U2 24
PU WEED SCI SOC AMER
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0043-1745
EI 1550-2759
J9 WEED SCI
JI Weed Sci.
PD APR-JUN
PY 2015
VL 63
IS 2
BP 461
EP 476
DI 10.1614/WS-D-14-00099.1
PG 16
WC Agronomy; Plant Sciences
SC Agriculture; Plant Sciences
GA CI7VU
UT WOS:000354973700010
ER
PT J
AU Teasdale, JR
Mirsky, SB
AF Teasdale, John R.
Mirsky, Steven B.
TI Tillage and Planting Date Effects on Weed Dormancy, Emergence, and Early
Growth in Organic Corn
SO WEED SCIENCE
LA English
DT Article
DE Cover crop; organic farming; periodicity; roller-crimper
ID NORTHEASTERN UNITED-STATES; COVER-CROP MANAGEMENT;
AMBROSIA-ARTEMISIIFOLIA; REDROOT PIGWEED; SECONDARY DORMANCY; WHEAT
STUBBLE; CEREAL RYE; SWEET CORN; GERMINATION; SYSTEMS
AB Insufficient weed control is a major constraint to adoption of reduced-tillage practices for organic grain production. Tillage, cover crop management, and crop planting date are factors that influence emergence periodicity and growth potential of important weed species in these systems. We assessed two hairy vetch cover crop management practices, disk-kill and roll-kill, across a range of corn planting dates from early May to late June in three experiments in Beltsville, MD. Patterns of seed dormancy, emergence, and early weed growth were determined for overseeded populations of common ragweed, giant foxtail, and smooth pigweed, three important species in the Mid-Atlantic states that represent early to late emergence. Common ragweed emergence was lowest and dormancy was highest of the three species across all planting dates. Giant foxtail emergence was higher than the other species in roll-killed hairy vetch and included a significant number of seeds that germinated before rolling operations in late June. Smooth pigweed had the highest emergence and lowest dormancy in disk-killed hairy vetch in June. Individual giant foxtail plant weight was higher in roll-killed than disk-killed hairy vetch in 2 of 3 yr, whereas that of smooth pigweed plants was higher in disk-killed than roll-killed vetch in 2 of 3 yr. Giant foxtail was the dominant species in roll-killed hairy vetch (averaged 79% of total weed biomass at corn silking), probably because of early germination and establishment before rolling operations. Smooth pigweed was the dominant species in disk-killed hairy vetch at June planting dates (averaged 77% of total weed biomass), probably because of high growth rates under warm conditions in tilled soil. This research demonstrated that cover crop management practices and the timing of planting operations can shift the dominant species of weed communities in organic farming systems and must be considered in long-term weed management planning.
C1 [Teasdale, John R.; Mirsky, Steven B.] ARS, Sustainable Agr Syst Lab, USDA, Beltsville, MD 20705 USA.
RP Teasdale, JR (reprint author), ARS, Sustainable Agr Syst Lab, USDA, Beltsville, MD 20705 USA.
EM john.teasdale@ars.usda.gov
FU U.S. Department of Agriculture Northeastern Regional Integrated Pest
Management competitive grants program
FX The U.S. Department of Agriculture Northeastern Regional Integrated Pest
Management competitive grants program provided partial financial support
of this research. We thank Ruth Mangum for her careful and expert
handling of procedures and data for this project, and Peter Ewashkow,
Sr.; Peter Ewashkow, Jr.; Ben Crockett; and Beth Currier for their
supporting labors.
NR 54
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Z9 0
U1 2
U2 28
PU WEED SCI SOC AMER
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0043-1745
EI 1550-2759
J9 WEED SCI
JI Weed Sci.
PD APR-JUN
PY 2015
VL 63
IS 2
BP 477
EP 490
DI 10.1614/WS-D-14-00112.1
PG 14
WC Agronomy; Plant Sciences
SC Agriculture; Plant Sciences
GA CI7VU
UT WOS:000354973700011
ER
PT J
AU Zielinski, WJ
Schlexer, FV
Dunk, JR
Lau, MJ
Graham, JJ
AF Zielinski, William J.
Schlexer, Fredrick V.
Dunk, Jeffrey R.
Lau, Matthew J.
Graham, James J.
TI A range-wide occupancy estimate and habitat model for the endangered
Point Arena mountain beaver (Aplodontia rufa nigra)
SO JOURNAL OF MAMMALOGY
LA English
DT Article
DE Aplodontia; California; habitat; modeling; mountain beaver; occupancy;
Point Arena
ID SPECIES DISTRIBUTION MODELS; ESTIMATING SITE OCCUPANCY; GRAIN-SIZE;
ABUNDANCE; CONSERVATION; PREDICTION; SELECTION; INDEXES; ABSENCE; SPACE
AB The mountain beaver (Aplodontia rufa) is notably the most primitive North American rodent with a restricted distribution in the Pacific Northwest based on its physiological limits to heat stress and water needs. The Point Arena subspecies (A. r. nigra) is federally listed as endangered and is 1 of 2 subspecies that have extremely small and disjunct distributions, putting the taxon at risk from habitat loss and warming global temperatures. We sought to understand their range-wide distribution, to predict the environmental features that best describe their occurrence, and to establish a foundation for monitoring their distribution. We randomly sampled the occurrence of Point Arena mountain beavers (PAMB) from the portion of their geographic range that was accessible (public lands plus private lands where permission was granted). We surveyed 127, 25-ha sample units for their distinctive burrows and estimated the probability of detecting burrows, if they were present, at >90% per visit. Using this information, we estimated occupancy across the accessible portion of the range to be 26.2%. Range-wide estimates of occupancy, combined with strategically selected locations where abundance and survival can be estimated noninvasively, may comprise a realistic monitoring program for this taxon. We also used the detection and nondetection locations to develop a habitat suitability model by relating these locations to remotely sensed predictors. We evaluated 53 a priori candidate habitat suitability models and the best-fitting model included gentle slopes, low terrain roughness indices, and the high density of rivers and streams. Selecting the probability value that best separated the sample units into suitable and nonsuitable habitat, we estimated a total of 70.5 km(2) of suitable habit, or approximately 40.4% of the original geographic range. New detections significantly expanded the known geographic range, moderating concerns about habitat loss, including that predicted by climate change. A substantial number of suitable areas were predicted to occur outside the current range. The identification of high suitability areas allows management agencies to prioritize areas for PAMB conservation planning, evaluate human impacts on habitat, and evaluate how a changing climate may affect distribution.
C1 [Zielinski, William J.; Schlexer, Fredrick V.] US Forest Serv, USDA, Pacific Southwest Res Stn, Redwood Sci Lab, Arcata, CA 95521 USA.
[Dunk, Jeffrey R.; Graham, James J.] Humboldt State Univ, Dept Environm Sci & Management, Arcata, CA 95521 USA.
[Lau, Matthew J.] Humboldt State Univ, Dept Wildlife, Arcata, CA 95521 USA.
RP Zielinski, WJ (reprint author), US Forest Serv, USDA, Pacific Southwest Res Stn, Redwood Sci Lab, 1700 Bayview Dr, Arcata, CA 95521 USA.
EM bzielinski@fs.fed.us
FU United States Fish and Wildlife Service (USFWS); California Department
of Fish and Wildlife (CDFW); USDA Forest Service [14-JV-11272138-006,
14-JV-11272138-007]; Redwood Sciences Laboratory of the USDA Forest
Service's Pacific Southwest Research Station
FX We thank the United States Fish and Wildlife Service (USFWS) and the
California Department of Fish and Wildlife (CDFW) for funding via
Section 6 of the Endangered Species Act. Funding for JRD and JJG was
from USDA Forest Service contract award numbers 14-JV-11272138-006 and
14-JV-11272138-007, respectively. B. Valentine of CDFW helped facilitate
the funding and provided valuable input and editorial review. Funding
also was provided by the Redwood Sciences Laboratory of the USDA Forest
Service's Pacific Southwest Research Station. J. Brice, B. Fahey, S.
Giordano, and W. Petersen served as field technicians, and D. Montoya
and J. Werren provided GIS assistance. We thank A. Liebenberg and R.
Pasquinelli of California State Parks, L. Morris of Redwood Coast Land
Conservancy, and J. Hunter of USFWS for assistance with contacting
landowners. The following provided access to private land they owned or
administered: L. Bammann and P. Terzoni, F. Beidler and T. McMahon
(Congaree River LLC), O. Darbro, P. and A. Dobbins, R. Douglas
(Mendocino Redwood Company), D. and A. Fisher, J. and M. Hooper (Oz
Farm), L. Hubbard and G. Jirak, H. Newberger and S. Kelly (The
Conservation Fund, Garcia River Forest), L. Stornetta, and N. Webb and
A. Levine.
NR 51
TC 1
Z9 1
U1 5
U2 21
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-2372
EI 1545-1542
J9 J MAMMAL
JI J. Mammal.
PD APR
PY 2015
VL 96
IS 2
BP 380
EP 393
DI 10.1093/jmammal/gyv039
PG 14
WC Zoology
SC Zoology
GA CH7XG
UT WOS:000354249300013
ER
PT J
AU Kellermayer, R
Nagy-Szakal, D
Harris, RA
Luna, RA
Pitashny, M
Schady, D
Mir, SAV
Lopez, ME
Gilger, MA
Belmont, J
Hollister, EB
Versalovic, J
AF Kellermayer, Richard
Nagy-Szakal, Dorottya
Harris, R. Alan
Luna, Ruth Ann
Pitashny, Milena
Schady, Deborah
Mir, Sabina A. V.
Lopez, Monica E.
Gilger, Mark A.
Belmont, John
Hollister, Emily B.
Versalovic, James
TI Serial Fecal Microbiota Transplantation Alters Mucosal Gene Expression
in Pediatric Ulcerative Colitis
SO AMERICAN JOURNAL OF GASTROENTEROLOGY
LA English
DT Letter
C1 [Kellermayer, Richard; Nagy-Szakal, Dorottya; Mir, Sabina A. V.; Gilger, Mark A.] Baylor Coll Med, Sect Pediat Gastroenterol, Dept Pediat, Houston, TX 77030 USA.
[Kellermayer, Richard; Nagy-Szakal, Dorottya; Mir, Sabina A. V.] Baylor Univ, USDA ARS, Childrens Nutr Res Ctr, Houston, TX 77030 USA.
[Harris, R. Alan; Belmont, John] Baylor Coll Med, Dept Human & Mol Genet, Houston, TX 77030 USA.
[Luna, Ruth Ann; Pitashny, Milena; Schady, Deborah; Hollister, Emily B.; Versalovic, James] Texas Childrens Hosp, Dept Pathol, Houston, TX 77030 USA.
[Luna, Ruth Ann; Pitashny, Milena; Schady, Deborah; Hollister, Emily B.; Versalovic, James] Baylor Coll Med, Dept Pathol & Immunol, Houston, TX 77030 USA.
[Lopez, Monica E.] Baylor Coll Med, Dept Surg, Houston, TX 77030 USA.
RP Kellermayer, R (reprint author), Baylor Coll Med, Sect Pediat Gastroenterol Hepatol & Nutr, Dept Pediat, 6621 Fannin St, Houston, TX 77030 USA.
EM kellerma@bcm.edu
FU NCI NIH HHS [U01 CA170930]; NIDDK NIH HHS [UH3 DK083990, P30 DK056338]
NR 5
TC 8
Z9 9
U1 0
U2 3
PU NATURE PUBLISHING GROUP
PI NEW YORK
PA 75 VARICK ST, 9TH FLR, NEW YORK, NY 10013-1917 USA
SN 0002-9270
EI 1572-0241
J9 AM J GASTROENTEROL
JI Am. J. Gastroenterol.
PD APR
PY 2015
VL 110
IS 4
BP 604
EP 606
DI 10.1038/ajg.2015.19
PG 4
WC Gastroenterology & Hepatology
SC Gastroenterology & Hepatology
GA CH4ZA
UT WOS:000354042000029
PM 25853207
ER
PT J
AU Fitzgerald, TL
Powell, JJ
Schneebeli, K
Hsia, MM
Gardiner, DM
Bragg, JN
McIntyre, CL
Manners, JM
Ayliffe, M
Watt, M
Vogel, JP
Henry, RJ
Kazan, K
AF Fitzgerald, Timothy L.
Powell, Jonathan J.
Schneebeli, Katharina
Hsia, M. Mandy
Gardiner, Donald M.
Bragg, Jennifer N.
McIntyre, C. Lynne
Manners, John M.
Ayliffe, Mick
Watt, Michelle
Vogel, John P.
Henry, Robert J.
Kazan, Kemal
TI Brachypodium as an emerging model for cereal-pathogen interactions
SO ANNALS OF BOTANY
LA English
DT Review
DE Brachypodium distachyon; barley stripe mosaic virus; cereal-pathogen
interaction; ecotypes; functional genomics; Fusarium; Magnaporthe; model
species; mutants; plant defence; Puccinia; Pyrenophora; Rhizoctonia;
Stagonospora; Xanthomonas
ID DISEASE-RESISTANCE GENES; GENOME-WIDE ASSOCIATION; FUSARIUM MYCOTOXIN
DEOXYNIVALENOL; QUANTITATIVE TRAIT LOCI; RHIZOCTONIA ROOT-ROT; TAN SPOT
RESISTANCE; MAGNAPORTHE-GRISEA; DEFENSE RESPONSES; POWDERY MILDEW;
UDP-GLUCOSYLTRANSFERASE
AB Background Cereal diseases cause tens of billions of dollars of losses annually and have devastating humanitarian consequences in the developing world. Increased understanding of the molecular basis of cereal host-pathogen interactions should facilitate development of novel resistance strategies. However, achieving this in most cereals can be challenging due to large and complex genomes, long generation times and large plant size, as well as quarantine and intellectual property issues that may constrain the development and use of community resources. Brachypodium distachyon (brachypodium) with its small, diploid and sequenced genome, short generation time, high transformability and rapidly expanding community resources is emerging as a tractable cereal model.
Scope Recent research reviewed here has demonstrated that brachypodium is either susceptible or partially susceptible to many of the major cereal pathogens. Thus, the study of brachypodium-pathogen interactions appears to hold great potential to improve understanding of cereal disease resistance, and to guide approaches to enhance this resistance. This paper reviews brachypodium experimental pathosystems for the study of fungal, bacterial and viral cereal pathogens; the current status of the use of brachypodium for functional analysis of cereal disease resistance; and comparative genomic approaches undertaken using brachypodium to assist characterization of cereal resistance genes. Additionally, it explores future prospects for brachypodium as a model to study cereal-pathogen interactions.
Conclusions The study of brachypodium-pathogen interactions appears to be a productive strategy for understanding mechanisms of disease resistance in cereal species. Knowledge obtained from this model interaction has strong potential to be exploited for crop improvement.
C1 [Fitzgerald, Timothy L.; Powell, Jonathan J.; Gardiner, Donald M.; McIntyre, C. Lynne; Kazan, Kemal] CSIRO, Agr Flagship, Brisbane, Qld 4067, Australia.
[Powell, Jonathan J.; Henry, Robert J.; Kazan, Kemal] Univ Queensland, Queensland Alliance Agr & Food Innovat, Brisbane, Qld 4072, Australia.
[Schneebeli, Katharina; Manners, John M.; Ayliffe, Mick; Watt, Michelle] CSIRO, Agr Flagship, Canberra, ACT 2601, Australia.
[Hsia, M. Mandy; Bragg, Jennifer N.] USDA ARS, WRRC, Albany, CA 94710 USA.
[Bragg, Jennifer N.] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94710 USA.
[Vogel, John P.] Dept Energy Joint Genome Inst, Walnut Creek, CA 94598 USA.
RP Fitzgerald, TL (reprint author), CSIRO, Agr Flagship, Brisbane, Qld 4067, Australia.
EM timothy.l.fitzgerald@gmail.com
RI Gardiner, Donald/A-1297-2010; Kazan, Kemal/B-8032-2008; Manners,
John/A-4922-2008; McIntyre, Cathrine/F-5782-2011; Watt,
Michelle/I-6226-2016; Henry, Robert/B-5824-2008; Schneebeli,
Katharina/A-9947-2011;
OI Gardiner, Donald/0000-0002-2162-8716; Watt,
Michelle/0000-0001-7843-0957; Henry, Robert/0000-0002-4060-0292;
Schneebeli, Katharina/0000-0002-2256-0645; Vogel,
John/0000-0003-1786-2689
FU Grains Research and Development Corporation, Australia
FX CSIRO-affiliated authors gratefully acknowledge support provided by the
Grains Research and Development Corporation, Australia.
NR 148
TC 6
Z9 6
U1 8
U2 52
PU OXFORD UNIV PRESS
PI OXFORD
PA GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
SN 0305-7364
EI 1095-8290
J9 ANN BOT-LONDON
JI Ann. Bot.
PD APR
PY 2015
VL 115
IS 5
BP 717
EP 731
DI 10.1093/aob/mcv010
PG 15
WC Plant Sciences
SC Plant Sciences
GA CH5HW
UT WOS:000354067300001
PM 25808446
ER
PT J
AU Gomez-Ruiz, J
Lopez-Guillen, G
Barrera, JF
Solis, AM
Zamarripa-Colmenero, A
AF Gomez-Ruiz, Jaime
Lopez-Guillen, Guillermo
Barrera, Juan F.
Solis, Alma M.
Zamarripa-Colmenero, Alfredo
TI First record of Ectomyelois muriscis (Lepidoptera: Pyralidae) on physic
nut (Jatropha curcas), a biofuel plant
SO BIOMASS & BIOENERGY
LA English
DT Article
DE Jatropha curcas; Ectomyelois muriscis; Host plant; Biodiesel; Chiapas
ID PYRALOIDEA LEPIDOPTERA
AB The natural infestation of fruits and stems of Jatropha curcas L. (Euphorbiaceae) by larvae of the pyralid moth Ectomyelois muriscis (Dyar) (Lepidoptera: Pyralidae) is reported for the first time. Populations of E. muriscis on J. curcas were observed in various parts of the state of Chiapas, southern Mexico. Feeding damage by larvae resulted in the destruction of J. curcas seeds. We conclude that this insect is a potential pest of J. curcas cultivation in this region. (C) 2015 Elsevier Ltd. All rights reserved.
C1 [Gomez-Ruiz, Jaime; Barrera, Juan F.] El Colegio Frontera Sur, Tapachula 30700, Chiapas, Mexico.
[Lopez-Guillen, Guillermo; Zamarripa-Colmenero, Alfredo] Inst Nacl Invest Forestales Agr & Pecuarias, Tuxtla Chico 30780, Chiapas, Mexico.
[Solis, Alma M.] ARS, Systemat Entomol Lab, PSI, USDA, Washington, DC USA.
[Solis, Alma M.] Smithsonian Inst, Natl Museum Nat Hist, Washington, DC 20560 USA.
RP Barrera, JF (reprint author), El Colegio Frontera Sur, Carretera Antiguo Aeropuerto Km 2-5, Tapachula 30700, Chiapas, Mexico.
EM jbarrera@ecosur.mx
RI Barrera, Juan/E-2212-2012; Gomez, Jaime/O-1717-2016
OI Barrera, Juan/0000-0002-8488-7782; Gomez, Jaime/0000-0002-9704-9761
FU Secretaria de Agricultura, Ganaderia, Desarrollo Rural, Pesca y
Alimentacion (SAGARPA)
FX We thank Eladio Garcia, Eduardo Chame and Higinio Lopez (El Colegio de
la Frontera Sur, ECOSUR) for technical assistance and Trevor Williams
(Instituto de Ecologia, INECOL) for suggestions to improve the
manuscript. This study was part of the project "Estudio de nuevas
especies con potencial agro-energetic en Mexico" coordinated by Alfredo
Zamarripa-Colmenero (Instituto Nacional de Investigaciones Forestales,
Agricolas y Pecuarias, INIFAP) and supported by Secretaria de
Agricultura, Ganaderia, Desarrollo Rural, Pesca y Alimentacion
(SAGARPA).
NR 24
TC 2
Z9 2
U1 1
U2 11
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0961-9534
EI 1873-2909
J9 BIOMASS BIOENERG
JI Biomass Bioenerg.
PD APR
PY 2015
VL 75
BP 150
EP 154
DI 10.1016/j.biombioe.2015.02.018
PG 5
WC Agricultural Engineering; Biotechnology & Applied Microbiology; Energy &
Fuels
SC Agriculture; Biotechnology & Applied Microbiology; Energy & Fuels
GA CH0WW
UT WOS:000353744100016
ER
PT J
AU Degenkolb, T
Nielsen, KF
Dieckmann, R
Branco-Rocha, F
Chaverri, P
Samuels, GJ
Thrane, U
von Dohren, H
Vilcinskas, A
Bruckner, H
AF Degenkolb, Thomas
Nielsen, Kristian Fog
Dieckmann, Ralf
Branco-Rocha, Fabiano
Chaverri, Priscila
Samuels, Gary J.
Thrane, Ulf
von Doehren, Hans
Vilcinskas, Andreas
Brueckner, Hans
TI Peptaibol, Secondary-Metabolite, and Hydrophobin Pattern of Commercial
Biocontrol Agents Formulated with Species of the Trichoderma harzianum
Complex
SO CHEMISTRY & BIODIVERSITY
LA English
DT Article
DE Trichoderma harzianum complex; Biocontrol; Peptaibols; Peptaibiomics;
Secondary metabolites; Mycotoxins; Hydrophobins
ID POLYPEPTIDE ANTIBIOTICS PEPTAIBIOTICS; COMPETITIVE SAPROPHYTIC ABILITY;
TOF MASS-SPECTROMETRY; TRICHOGIN GA IV; FUNGUS TRICHODERMA;
CONFIGURATIONAL ASSIGNMENT; SEQUENCE DETERMINATION;
BIOLOGICAL-ACTIVITIES; TOXICITY ASSESSMENT; ATROVIRIDE F80317
AB The production of bioactive polypeptides (peptaibiotics) in vivo is a sophisticated adaptation strategy of both mycoparasitic and saprotrophic Trichoderma species for colonizing and defending their natural habitats. This feature is of major practical importance, as the detection of peptaibiotics in plant-protective Trichoderma species, which are successfully used against economically relevant bacterial and fungal plant pathogens, certainly contributes to a better understanding of these complex antagonistic interactions. We analyzed five commercial biocontrol agents (BCAs), namely Canna((R)), Trichosan((R)), Vitalin((R)), Promot((R)) WP, and TrichoMax((R)), formulated with recently described species of the Trichoderma harzianum complex, viz. T. afroharzianum, T. simmonsii, and T. guizhouense. By using the well-established, HPLC/MS-based peptaibiomics approach, it could unequivocally be demonstrated that all of these formulations contained new and recurrent peptaibols, i.e., peptaibiotics carrying an acetylated N-terminus, the C-terminus of which is reduced to a 1,2-amino alcohol. Their chain lengths, including the amino alcohol, were 11, 14, and 18 residues, respectively. Peptaibols were also to be the dominating secondary metabolites in plate cultures of the four strains obtained from four of the Trichoderma- based BCAs, contributing 95% of the UHPLC-UV/VIS peak areas and 99% of the total ion count MS peak area from solid media. Furthermore, species-specific hydrophobins, as well as non-peptaibiotic secondary metabolites, were detected, the latter being known for their antifungal, siderophore, or plant-growth-promoting activities. Notably, none of the isolates produced low-molecular weight mycotoxins.
C1 [Degenkolb, Thomas; Brueckner, Hans] Univ Giessen, Interdisciplinary Res Ctr BioSyst Land Use & Nutr, Dept Food Sci, Inst Nutr Sci, DE-35392 Giessen, Germany.
[Nielsen, Kristian Fog; Thrane, Ulf] Tech Univ Denmark, Dept Syst Biol, DK-2800 Lyngby, Denmark.
[Dieckmann, Ralf; von Doehren, Hans] Tech Univ Berlin, Inst Chem, Biochem & Mol Biol OE 2, DE-10587 Berlin, Germany.
[Branco-Rocha, Fabiano] Univ Fed Reconcavo Bahia, Ctr Ciencias Agr Ambientais & Biol, Cruz Das Almas, BA, Brazil.
[Chaverri, Priscila] Univ Maryland, Dept Plant Sci & Landscape Architecture, College Pk, MD 20742 USA.
[Chaverri, Priscila] Univ Costa Rica, Escuela Biol, San Jose, Costa Rica.
[Samuels, Gary J.] ARS, USDA, Systemat Mycol & Microbiol Lab, Beltsville, MD 20705 USA.
[Vilcinskas, Andreas] Univ Giessen, Interdisciplinary Res Ctr BioSyst Land Use & Nutr, Dept Appl Entomol, IPAZ, DE-35392 Giessen, Germany.
[Vilcinskas, Andreas] LOEWE Ctr Insect Biotechnol & Bioresources ZIB, Fraunhofer Inst Mol Biol & Appl Ecol IME, DE-35394 Giessen, Germany.
RP Degenkolb, T (reprint author), Univ Giessen, Interdisciplinary Res Ctr BioSyst Land Use & Nutr, Dept Appl Entomol, IPAZ, Heinrich Buff Ring 26-32, DE-35392 Giessen, Germany.
EM thomas.degenkolb@ernaehrung.uni-giessen.de
RI Nielsen, Kristian/C-7233-2011; Thrane, Ulf/G-2978-2016
OI Nielsen, Kristian/0000-0002-5848-0911; Thrane, Ulf/0000-0002-6040-4141
FU Erwin Stein-Foundation (D-Giessen); Danish Research Agency for
Technology and Production [09-064967]; EEC project MycoRed
[KBBE-2007-222690-2]
FX T. D. gratefully acknowledges support by a grant of the Erwin
Stein-Foundation (D-Giessen). The Authors are indebted to R. Humm
(Vitalin Pflanzengesundheit GmbH, D-Ober-Ramstadt) and Dr. Jurgen
Kutscheidt (Sachverstandigenburo D Der gesunde Baum!?' D-Tonisvorst),
who provided samples of Vitalin (R) and TrichoMax (R), respectively. K.
F. N. and U. T. acknowledge support from the Danish Research Agency for
Technology and Production (grant No. 09-064967) and the EEC project
MycoRed (KBBE-2007-222690-2). K. F. N. and U. T. are grateful to Agilent
Technologies for the Thought Leader Donation of the UHPLC-QTOF system.
NR 106
TC 8
Z9 8
U1 14
U2 41
PU WILEY-V C H VERLAG GMBH
PI WEINHEIM
PA POSTFACH 101161, 69451 WEINHEIM, GERMANY
SN 1612-1872
EI 1612-1880
J9 CHEM BIODIVERS
JI Chem. Biodivers.
PD APR
PY 2015
VL 12
IS 4
BP 662
EP 684
DI 10.1002/cbdv.201400300
PG 23
WC Biochemistry & Molecular Biology; Chemistry, Multidisciplinary
SC Biochemistry & Molecular Biology; Chemistry
GA CH4YX
UT WOS:000354041700016
PM 25879509
ER
PT J
AU Staeben, JC
Sullivan, BT
Nowak, JT
Gandhi, KJK
AF Staeben, Jenny C.
Sullivan, Brian T.
Nowak, John T.
Gandhi, Kamal J. K.
TI Enantiospecific responses of southern pine beetle (Dendroctonus
frontalis) and its clerid predator, Thanasimus dubius, to alpha-pinene
SO CHEMOECOLOGY
LA English
DT Article
DE alpha-Pinene; Dendroctonus frontalis; endo-Brevicomin; Enantiomer;
Frontalin; Thanasimus dubius
ID BARK BEETLE; ENANTIOMERIC COMPOSITION; ENDO-BREVICOMIN; AGGREGATION
PHEROMONES; BEHAVIORAL CHEMICALS; HOST VOLATILES; NORTH-AMERICA;
COLEOPTERA; SCOLYTIDAE; CURCULIONIDAE
AB Multi-trophic interactions between pine bark beetles, their host trees, and predators are mediated in part by volatile terpenes in host tree oleoresin that can influence aggregation and/or host finding by both prey and predator species. The southern pine beetle, Dendroctonus frontalis Zimmermann, mass-attacks pine trees in response to its aggregation pheromone combined with host resin odors including alpha-pinene. We investigated discrimination of alpha-pinene enantiomers in olfactory responses of D. frontalis, and in behavioral responses of D. frontalis and its major clerid predator, Thanasimus dubius (Fabricius). Trapping trials in the spring and fall assessed attraction of both species to the D. frontalis aggregation pheromone components, frontalin and endo-brevicomin, either alone or in combination with alpha-pinene lures of differing enantiomeric compositions. alpha-Pinene lures enriched with the (+)-enantiomer (97.5 %) increased D. frontalis catches significantly more than (-)-enriched (93 %) lures, but did not differ from racemic lures. Sexes of D. frontalis did not differ from one another in their responses to the enantiomers, and there was no difference in lure discrimination by D. frontalis and T. dubius. Thanasimus dubius did not distinguish between different alpha-pinene enantiomers. Dose-response electroantennogram studies of D. frontalis indicated that their antennae had a slightly lower response threshold to (+) than (-)-alpha-pinene. Each enantiomer habituated the antennae more to itself than to its antipode, implying the existence of olfactory receptors with differing affinities for enantiomers. The preference of D. frontalis for (+)-alpha-pinene may affect its host selection behavior, and should be considered in population monitoring lures.
C1 [Staeben, Jenny C.] Landis Int Inc, Valdosta, GA 31602 USA.
[Sullivan, Brian T.] US Forest Serv, USDA, Southern Res Stn, Pineville, LA 71360 USA.
[Nowak, John T.] US Forest Serv, USDA, Forest Hlth Protect, Asheville, NC 28804 USA.
[Gandhi, Kamal J. K.] Univ Georgia, Daniel B Warnell Sch Forestry & Nat Resources, Athens, GA 30602 USA.
RP Staeben, JC (reprint author), Landis Int Inc, 3185 Madison Highway,POB 5126, Valdosta, GA 31602 USA.
EM jstaeben@landisintl.com; briansullivan@fs.fed.us; jnowak@fs.fed.us;
kjgandhi@uga.edu
FU USDA Forest Service, Forest Health Protection; Daniel B. Warnell School
of Forestry and Natural Resources, University of Georgia, Athens
FX We thank Matt P. Ayers (Dartmouth College, Hanover, New Jersey), Wayne
C. Berisford, Mark J. Dalusky (University of Georgia, Athens, Georgia),
and the USDA Forest Service, Forest Health Protection for project
trapping materials. We also thank Sean Meadows, Brittany Barnes, and
Jordan Burke (Forest Entomology Laboratory, University of Georgia) for
field assistance. Statistical support was provided by Kimberly
Love-Myers (Statistical Counseling Center, University of Georgia).
JoAnne Barrett and Emma Sullivan provided laboratory technical support.
Financial support for the project was provided by the USDA Forest
Service, Forest Health Protection, and Daniel B. Warnell School of
Forestry and Natural Resources, University of Georgia, Athens.
NR 66
TC 2
Z9 2
U1 1
U2 10
PU SPRINGER BASEL AG
PI BASEL
PA PICASSOPLATZ 4, BASEL, 4052, SWITZERLAND
SN 0937-7409
EI 1423-0445
J9 CHEMOECOLOGY
JI Chemoecology
PD APR
PY 2015
VL 25
IS 2
BP 73
EP 83
DI 10.1007/s00049-014-0175-0
PG 11
WC Biochemistry & Molecular Biology; Ecology
SC Biochemistry & Molecular Biology; Environmental Sciences & Ecology
GA CH6CH
UT WOS:000354122900003
ER
PT J
AU Mikota, SK
Gairhe, K
Giri, K
Hamilton, K
Miller, M
Paudel, S
Lyashchenko, K
Larsen, RS
Payeur, JB
Waters, WR
Greenwald, R
Dumonceaux, G
Vincent, B
Kaufman, GE
AF Mikota, Susan K.
Gairhe, Kamal
Giri, Kamal
Hamilton, Karin
Miller, Michele
Paudel, Sarad
Lyashchenko, Konstantin
Larsen, R. Scott
Payeur, Janet B.
Waters, W. Ray
Greenwald, Rena
Dumonceaux, Genevieve
Vincent, Barbara
Kaufman, Gretchen E.
TI Tuberculosis surveillance of elephants (Elephas maximus) in Nepal at the
captive-wild interface
SO EUROPEAN JOURNAL OF WILDLIFE RESEARCH
LA English
DT Article
DE Asian elephant; Elephas maximus; Tuberculosis; Serology; Multi-print
immunoassay (MAPIA)
ID ASIAN ELEPHANTS; MYCOBACTERIUM-TUBERCULOSIS; DIAGNOSIS; AFRICAN;
EPIDEMIOLOGY; INFECTION
AB A comprehensive elephant tuberculosis (TB) survey using culture and four serological screening tests was conducted in Nepal in response to concern raised by wildlife officials that TB could threaten wild populations of elephants, rhinos, and other susceptible species. Captive elephants come into close contact with wild animals during conservation and tourism activities inside Nepal's national parks. Private and government-owned male and female captive Asian elephants (Elephas maximus) were included in the study. The mean reported age was 38 years (range 5-60 years). A total of 289 samples from 120 elephants were collected for mycobacterial culture. Culture samples were processed at the National Tuberculosis Centre (NTC) in Nepal and the National Veterinary Services Laboratories (NVSL) in Ames, IA. Acid-fast organisms were observed in 11 and 21 samples processed at NTC and NVSL, respectively, and nontuberculous mycobacteria (NTMs) were isolated from six elephants. There were no isolations of Mycobacterium tuberculosis or Mycobacterium bovis. Blood samples were also collected from 115 of the elephants for serological testing using the Chembio ElephantTB STAT-PAK (R), the Chembio MultiAntigen Print Immunoassay test, a multi-antigen ELISA, and an immunoblot assay. Culture and serological results were variable and required careful interpretation to develop criteria to assess TB risk. Elephants were assigned to one of four disease risk groups (high, moderate, low, and undetermined), and management recommendations for each group were made to government authorities. Serological results were prioritized in developing recommendations because of culture limitations and inconclusive culture results. This strategy was based on evidence for the early predictive value of serological tests and the urgent need expressed by wildlife authorities in Nepal to protect their captive elephants, mitigate TB at the captive-wild interface, and safeguard tourism.
C1 [Mikota, Susan K.; Vincent, Barbara] Elephant Care Int, Hohenwald, TN 38462 USA.
[Gairhe, Kamal] Chitwan Natl Pk, Dept Natl Pk & Wildlife Conservat Sauraha, Biratnagar, Nepal.
[Giri, Kamal] Govt Nepal, Biratnagar, Nepal.
[Hamilton, Karin] Univ Minnesota, Coll Vet Med, St Paul, MN 55108 USA.
[Miller, Michele] Univ Stellenbosch, MRC Ctr Mol & Cellular Biol, DST NRF Ctr Excellence Biomed TB Res, Div Mol Biol & Human Genet,Fac Med & Hlth Sci, ZA-7505 Tygerberg, South Africa.
[Paudel, Sarad] Hokkaido Univ, Grad Sch Vet Med, Lab Wildlife Biol & Med, Kita Ku, Sapporo, Hokkaido 0600818, Japan.
[Lyashchenko, Konstantin; Greenwald, Rena] Chembio Diagnost Syst Inc, Medford, NY 11763 USA.
[Larsen, R. Scott] Denver Zoo, Denver, CO 80205 USA.
[Payeur, Janet B.] USDA, APHIS, Natl Vet Serv Labs, Ames, IA 50010 USA.
[Waters, W. Ray] ARS, Natl Anim Dis Ctr, USDA, Ames, IA 50010 USA.
[Dumonceaux, Genevieve] West Palm Beach Zoo, W Palm Beach, FL 33405 USA.
[Kaufman, Gretchen E.] Washington State Univ, Paul G Allen Sch Global Anim Hlth, Pullman, WA 99164 USA.
RP Mikota, SK (reprint author), Elephant Care Int, 166 Limo View Lane, Hohenwald, TN 38462 USA.
EM smikota@elephantcare.org
OI Miller, Michele/0000-0002-5883-6076
FU American Association of Zoo Veterinarians Mazuri Grant Fund; American
Veterinary Medical Foundation; Ernst Foundation
FX Funding for this project was provided by the American Association of Zoo
Veterinarians Mazuri Grant Fund, the American Veterinary Medical
Foundation, Ernst Foundation, and private donations to Elephant Care
International. The authors acknowledge the Department of National Park
and Wildlife Conservation, Government of Nepal for permission to conduct
this study, Mr. Balkrishna Giri for organizing our schedule, Dr. I.P.
Dhakal at the Institute of Agriculture and Animal Science for
supervising students, Dr. Jeffrey T. Nelson at NVSL and Joni Triantis at
Colorado State University for laboratory support, and Dr. D.D. Joshi
(deceased), National Zoonosis and Food Hygiene Research Center for
storing samples prior to shipment to the USA. We also extend our
gratitude to the National Trust for Nature Conservation for their
on-going support of the Nepal Elephant Healthcare and Tuberculosis
Surveillance Program.
NR 35
TC 0
Z9 0
U1 5
U2 21
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1612-4642
EI 1439-0574
J9 EUR J WILDLIFE RES
JI Eur. J. Wildl. Res.
PD APR
PY 2015
VL 61
IS 2
BP 221
EP 229
DI 10.1007/s10344-014-0890-4
PG 9
WC Ecology; Zoology
SC Environmental Sciences & Ecology; Zoology
GA CH7DO
UT WOS:000354196000004
ER
PT J
AU Garcia, RA
Clevenstine, SM
Piazza, GJ
AF Garcia, Rafael A.
Clevenstine, Shaina M.
Piazza, George J.
TI Ultrasonic processing for recovery of chicken erythrocyte hemoglobin
SO FOOD AND BIOPRODUCTS PROCESSING
LA English
DT Article
DE Blood; Flocculant; Ultrasonic processing; Hemoglobin; Cell lysis;
Bio-based products
ID ASSISTED EXTRACTION; PROTEIN RELEASE; WHEY PROTEINS; YEAST-CELLS;
SONOCHEMISTRY; DISRUPTION; POWER; TEMPERATURE; CAVITATION; SONICATION
AB Hemoglobin from chicken blood has been shown to be a good substitute for synthetic polymeric flocculants. One stage of processing the blood entails lysis of the cells to release the hemoglobin; in the present study, the use of ultrasonic processing at this stage is investigated. Washed chicken blood cells are suspended in buffer and run continuously through a chamber attached to an ultrasonic probe. Calorimetry is used to measure acoustic power input to the liquid. Ultrasonic cell lysis is tested using chamber residence times of 75-300 ms, and the equipment's entire range of power inputs. The hemoglobin release kinetic parameters are determined and it is shown that above a particular level, increasing power input can actually result in a decreased rate constant. Ultrasonic processing can damage proteins, so reduction of hemoglobin's flocculant activity is considered. Using a sensitive assay involving suspensions of kaolin clay, no effect of ultrasonic processing on hemoglobin flocculent activity is detected. Although the conversion of electrical power to acoustic power is inefficient, the electric power required to release greater than 90% of the hemoglobin is shown to be minimal. Published by Elsevier B.V. on behalf of The Institution of Chemical Engineers.
C1 [Garcia, Rafael A.; Clevenstine, Shaina M.; Piazza, George J.] ARS, USDA, Eastern Reg Res Ctr, Biobased & Other Anim Coprod Res Unit, Wyndmoor, PA 19038 USA.
RP Garcia, RA (reprint author), ARS, USDA, Eastern Reg Res Ctr, Biobased & Other Anim Coprod Res Unit, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM rafael.garcia@ars.usda.gov
OI Garcia, Rafael A./0000-0002-5452-3929
NR 41
TC 1
Z9 1
U1 1
U2 9
PU INST CHEMICAL ENGINEERS
PI RUGBY
PA 165-189 RAILWAY TERRACE, DAVIS BLDG, RUGBY CV21 3HQ, ENGLAND
SN 0960-3085
EI 1744-3571
J9 FOOD BIOPROD PROCESS
JI Food Bioprod. Process.
PD APR
PY 2015
VL 94
BP 1
EP 9
DI 10.1016/j.fbp.2014.12.002
PG 9
WC Biotechnology & Applied Microbiology; Engineering, Chemical; Food
Science & Technology
SC Biotechnology & Applied Microbiology; Engineering; Food Science &
Technology
GA CH6IO
UT WOS:000354140500001
ER
PT J
AU Milczarek, RR
Liu, K
AF Milczarek, Rebecca R.
Liu, Keshun
TI Drum drying performance of condensed distillers solubles and comparison
to that of physically modified condensed distillers solubles
SO FOOD AND BIOPRODUCTS PROCESSING
LA English
DT Article
DE Condensed distillers solubles (CDS); Dry grind processing; Corn (maize);
Fuel ethanol; Co-product; Drying performance
ID CHEMICAL-PROPERTIES; FUEL ETHANOL; DRIED GRAINS; BY-PRODUCTS; WET
GRAINS; CORN
AB Condensed distillers solubles (CDS) is a viscous, syrupy co-product of ethanol production from corn or other starchy grains; CDS exhibits strong recalcitrance to drying due to its chemical composition, which includes a substantial amount of glycerol. The objectives of this study were to determine the drum drying performance of CDS and to compare it to that of a physically modified CDS (MCDS) having a reduced glycerol level. Material type (CDS vs. MCDS), dwell time, drum internal steam temperature, and gap width were evaluated for their effects on the final moisture content, water activity, and color of the dried product. While both CDS and MCDS could be dried to a range of endpoint moisture contents, dried CDS exhibited a narrow range of water activity compared to that of MCDS. Gap width was found to be the predominant factor affecting dried product color. This work demonstrates that drum drying can effectively reduce the moisture content of CDS, even though the water activity of the dried product cannot be reduced beyond similar to 0.45. In contrast, MCDS can be readily drum-dried into a shelf-stable, flaked product with a pleasing appearance. Published by Elsevier B.V. on behalf of The Institution of Chemical Engineers.
C1 [Milczarek, Rebecca R.] USDA ARS, WRRC, PFRU, Albany, CA 94710 USA.
[Liu, Keshun] USDA ARS, Grain Chem & Utilizat Lab, Natl Small Grains & Potato Germplasm Res Unit, Aberdeen, ID 83210 USA.
RP Milczarek, RR (reprint author), USDA ARS, WRRC, PFRU, 800 Buchanan St, Albany, CA 94710 USA.
EM rebecca.milczarek@ars.usda.gov; keshun.liu@ars.usda.gov
NR 26
TC 2
Z9 2
U1 3
U2 5
PU INST CHEMICAL ENGINEERS
PI RUGBY
PA 165-189 RAILWAY TERRACE, DAVIS BLDG, RUGBY CV21 3HQ, ENGLAND
SN 0960-3085
EI 1744-3571
J9 FOOD BIOPROD PROCESS
JI Food Bioprod. Process.
PD APR
PY 2015
VL 94
BP 208
EP 217
DI 10.1016/j.fbp.2014.01.004
PG 10
WC Biotechnology & Applied Microbiology; Engineering, Chemical; Food
Science & Technology
SC Biotechnology & Applied Microbiology; Engineering; Food Science &
Technology
GA CH6IO
UT WOS:000354140500021
ER
PT J
AU Samala, A
Srinivasan, R
Yadav, M
AF Samala, Aditya
Srinivasan, Radhakrishnan
Yadav, Madhav
TI Comparison of xylo-oligosaccharides production by autohydrolysis of
fibers separated from ground corn flour and DDGS
SO FOOD AND BIOPRODUCTS PROCESSING
LA English
DT Article
DE Autohydrolysis; Corn fiber; DDGS; Ground corn flour;
Xylo-oligosaccharides
ID ACID
AB Xylo-oligosaccharides (XOS) are known to have beneficial health properties, and are considered to be functional food ingredients. The objective of this study is to compare corn fibers separated from ground corn flour and distillers dried grains with solubles (DDGS) for XOS yield and optimum autohydrolysis conditions. Based on the initial xylan content, the fiber separated from ground corn flour (PC) resulted in higher XOS yield (71.5%) than the fiber separated from DDGS (FD) (54.6%) at the maximum XOS production conditions. XOS produced were mainly xylobiose and xylotriose. Based on total initial material also, PC resulted in higher XOS yield (8.9%) than FD (8.0%), based on total original masses. Thus, fiber separated from ground corn flour would be a better feedstock for production of XOS than fiber separated from DDGS. The conditions for maximum XOS production from FD and PC were 180 C with 20 min hold-time and 190 degrees C with 10 min hold-time, respectively. (C) 2014 The Institution of Chemical Engineers. Published by Elsevier B.V. All rights reserved.
C1 [Samala, Aditya; Srinivasan, Radhakrishnan] Mississippi State Univ, Dept Agr & Biol Engn, Mississippi State, MS 39762 USA.
[Yadav, Madhav] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
RP Srinivasan, R (reprint author), 130 Creelman St,Box 9632, Mississippi State, MS 39762 USA.
EM rs634@msstate.edu
NR 14
TC 3
Z9 3
U1 1
U2 5
PU INST CHEMICAL ENGINEERS
PI RUGBY
PA 165-189 RAILWAY TERRACE, DAVIS BLDG, RUGBY CV21 3HQ, ENGLAND
SN 0960-3085
EI 1744-3571
J9 FOOD BIOPROD PROCESS
JI Food Bioprod. Process.
PD APR
PY 2015
VL 94
BP 354
EP 364
DI 10.1016/j.fbp.2014.04.004
PG 11
WC Biotechnology & Applied Microbiology; Engineering, Chemical; Food
Science & Technology
SC Biotechnology & Applied Microbiology; Engineering; Food Science &
Technology
GA CH6IO
UT WOS:000354140500037
ER
PT J
AU Blazier, MA
Scott, DA
Coleman, R
AF Blazier, Michael A.
Scott, D. Andrew
Coleman, Ryan
TI Mid-Rotation Silviculture Timing Influences Nitrogen Mineralization of
Loblolly Pine Plantations in the Mid-South USA
SO FORESTS
LA English
DT Article
ID SOUTHERN UNITED-STATES; DEHYDROGENASE-ACTIVITY; BIOCIDAL TREATMENTS;
VEGETATION CONTROL; MICROBIAL ACTIVITY; SOIL; FERTILIZATION; FOREST;
NITRIFICATION; DYNAMICS
AB Intensively managed loblolly pine (Pinus taeda L.) plantations often develop nutrient deficiencies near mid-rotation. Common silvicultural treatments for improving stand nutrition at this stage include thinning, fertilization, and vegetation control. It is important to better understand the influence of timing fertilization and vegetation control in relation to thinning as part of improving the efficiency of these practices. The objective of this study was to determine the effects of fertilization and vegetation control conducted within a year prior to thinning and within a year after thinning on soil N supply in mid-rotation loblolly pine plantations on a gradient of soil textures. Net N mineralization (N-min) and exchangeable N were measured monthly. Fertilization increased annual N-min at all sites irrespective of timing relative to thinning, with the increase more pronounced when combined with vegetation control. This finding suggests some management flexibility in the timing of mid-rotation fertilization relative to thinning for increasing soil N supply. However, the site with the highest total soil N and the lowest C:N ratio was more prone to NO3-N increases after fertilization conducted pre- and post-thinning. At all sites, fertilization with vegetation control promoted increases in NO3-N when done after thinning, which may indicate that this practice increased soil N supply to levels that exceeded stand N demand.
C1 [Blazier, Michael A.; Coleman, Ryan] Louisiana State Univ, Ctr Agr, Hill Farm Res Stn, Homer, LA 71040 USA.
[Scott, D. Andrew] US Forest Serv, Southern Res Stn, USDA, Normal, AL 35762 USA.
RP Blazier, MA (reprint author), Louisiana State Univ, Ctr Agr, Hill Farm Res Stn, Homer, LA 71040 USA.
EM mblazier@agcenter.lsu.edu; andyscott@fs.fed.us; rpcoleman2@gmail.com
FU USDA Agenda program; USDA Forest Service, Southern Research Station
FX The authors gratefully acknowledge funding from the USDA Agenda 2020
program and the USDA Forest Service, Southern Research Station, the
cooperation of Weyerhaeuser NR, International Paper, and Boise, and all
research technicians and students that assisted in field and laboratory
to make this project possible.
NR 42
TC 0
Z9 0
U1 4
U2 7
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1999-4907
J9 FORESTS
JI Forests
PD APR
PY 2015
VL 6
IS 4
BP 1061
EP 1082
DI 10.3390/f6041061
PG 22
WC Forestry
SC Forestry
GA CH1IR
UT WOS:000353775500010
ER
PT J
AU Sharma-Poudyal, D
Paulitz, TC
du Toit, LJ
AF Sharma-Poudyal, Dipak
Paulitz, Timothy C.
du Toit, Lindsey J.
TI Evaluation of Onion Genotypes for Resistance to Stunting Caused by
Rhizoctonia solani AG 8
SO HORTSCIENCE
LA English
DT Article
DE root pathogen; disease resistance; Columbia Basin
AB Thirty-five onion genotypes were evaluated for resistance to stunting caused by Rhizoctonia solani anastomosis group 8 (AG 8) in a growth chamber set at 15 +/- 1 degrees C. The trial was repeated. Resistance to R. solani AG 8 was defined as a lack of significant difference in plant height, root length, and/or total dry biomass between inoculated and noninoculated plants of the same genotype. Plant height was not reduced significantly by R. solani AG 8 for 14 and 7 of the 35 genotypes in Trials 1 and 2, respectively. In Trial 1, plant height reduction caused by R. solani ranged from 24% for the cv. Lasalle to 62% for the experimental line R14882, and in Trial 2 plant height reduction ranged from 22% for the experimental line PX07713218 to 53% for the cv. Montblanc. However, the extent of reduction in plant height caused by R. solani did not differ significantly among genotypes in either trial. Onion root length was not reduced by R. solani AG 8 for 26 and 18 of the 35 genotypes in Trials 1 and 2, respectively. The degree of reduction in root length ranged from 9% (114889) to 76%.(Sterling and SN232) in Trial 1, and 14% (SN325) to 74% (Sterling) in Trial 2. Onion dry biomass was not reduced by R. solani AG 8 for 19 and 7 of the 35 genotypes in Trials 1 and 2, respectively, and ranged from 18% (Elbrus) to 69% (Sterling) in Trial 1, and 29% (SN232) to 79% (Sterling) in Trial 2. The reduction in onion root length and total biomass did not differ Significantly among onion genotypes in Trial 1, but differed among genotypes in Trial 2. Of the 35 genotypes evaluated, 3, 16, and 3 demonstrated partial resistance to R. solani AG 8 for plant height, root length, and total biomass, respectively, in both trials. Only four genotypes displayed partial resistance to R. solani AG 8 for at least two of the three growth parameters: plant height, root length, and biomass of PX07713218 were unaffected by the fungus in either trial; and R14885, R14888, and SN307 displayed partial resistance in both trials for two of the three parameters, and in one of the two trials for the third parameter. These four genotypes could be used in onion breeding programs to develop cultivars partially resistant to stunting caused by R. solani AG 8.
C1 [Sharma-Poudyal, Dipak] Washington State Univ, Dept Plant Pathol, Pullman, WA 99164 USA.
[Paulitz, Timothy C.] ARS, USDA, Pullman, WA 99164 USA.
[du Toit, Lindsey J.] Washington State Univ Mt Vernon NWREC, Dept Plant Pathol, Mt Vernon, WA 98273 USA.
RP du Toit, LJ (reprint author), Washington State Univ Mt Vernon NWREC, Dept Plant Pathol, Mt Vernon, WA 98273 USA.
EM dutoit@wsu.edu
FU Pacific Northwest Vegetable Association; Washington State Commission for
Pesticide Registration, a Specialty Crop Block Grant from the Washington
State Depadnient of Agriculture; Washington State University Department
of Plant Pathology (PPNS) [0671]; College of Agricultural, Human, and
Natural Resource Sciences Agricultural Research Center, Pullman, WA
[0595]
FX This research was supported financially by the Pacific Northwest
Vegetable Association, the Washington State Commission for Pesticide
Registration, a Specialty Crop Block Grant from the Washington State
Depadnient of Agriculture, and Washington State University Department of
Plant Pathology (PPNS No. 0671) as well as the College of Agricultural,
Human, and Natural Resource Sciences Agricultural Research Center
(Hatch-Project No. 0595), Pullman, WA. The authors thank Bejo Seeds,
Inc.; Seminis Vegetable Seeds; and Bayer CropScience Vegetable Seeds for
providing seeds of onion genotypes for this study.
NR 14
TC 1
Z9 1
U1 2
U2 7
PU AMER SOC HORTICULTURAL SCIENCE
PI ALEXANDRIA
PA 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA
SN 0018-5345
EI 2327-9834
J9 HORTSCIENCE
JI Hortscience
PD APR
PY 2015
VL 50
IS 4
BP 551
EP 554
PG 4
WC Horticulture
SC Agriculture
GA CH5KO
UT WOS:000354074700008
ER
PT J
AU Altland, JE
Locke, JC
Zellner, WL
Boldt, JK
AF Altland, James E.
Locke, James C.
Zellner, Wendy L.
Boldt, Jennifer K.
TI Steel Slag Raises pH of Greenhouse Substrates
SO HORTSCIENCE
LA English
DT Article
DE dolomitic lime; sunflower; peatmoss; floriculture; electrical
conductivity
ID GROWTH; BARK
AB Dolomitic lime (DL) is the primary liming agent used for increasing pH in peatmoss-based substrates. Steel slag (SS) is a byproduct of the steel manufacturing industry that has been used to elevate field soil pH. The objective of this research was to determine the pH response of a peatmoss-based greenhouse substrate to varying rates of DL or SS. Two experiments were conducted with an 85 peatmoss : 15 perlite substrate. In the first experiment, the substrate was amended with 0, 2.4, 4.8, or 7.1 kg.m(-3) of either DL or SS. Half of the containers remained fallow and the-other half were potted with a single sunflower (Helianthus annuus L. 'Pacino Gold'). In the second experiment, fallow containers were only used with the substrate amended with 0, 2.4, 4.8, 9.5, or 14.2 kg.m(-3) DL or SS. Sunflower were measured for relative foliar chlorophyll content, shoot mass, root ratings, and foliar nutrient concentrations. Substrate electrical conductivity (EC) and pH were measured weekly using the pour-through procedure. All sunflower plants grew vigorously, although nonamended controls had less shoot dry weight than those amended with DL or SS. There were minor differences in foliar concentration of N, Ca, Mg, and Mn; however, these differences did not adversely affect plant growth. Summarizing across both experiments, EC was affected by treatment and time, although all substrates had EC readings within the range recommended for floriculture crop production (1.0-4.6 mS.cm(-1)). Substrate pH differed slightly in Expt. 1 between fallow and planted containers. Substrate pH increased exponentially with increasing rates of either DL or SS. Maximum pH in fallow DL and SS amended substrates was 6.57 and 6.93, respectively, in Expt. 1 and 6.85 and 7.67, respectively, in Expt. 2. The SS used in this experiment resulted in a greater pH response than DL with higher application rates. SS is a viable material for raising pH of soilless substrates.
C1 [Altland, James E.] USDA ARS, Applicat Technol Res Unit, Hort Insects Res Lab 27, Wooster, OH 44691 USA.
[Locke, James C.; Zellner, Wendy L.; Boldt, Jennifer K.] USDA ARS, Applicat Technol Res Unit, Greenhouse Prod Res Grp, Toledo, OH 43606 USA.
RP Locke, JC (reprint author), USDA ARS, Applicat Technol Res Unit, Greenhouse Prod Res Grp, 2801 West Bancroft St,Mail Stop 604, Toledo, OH 43606 USA.
EM jim.locke@ars.usda.gov
NR 24
TC 1
Z9 1
U1 0
U2 2
PU AMER SOC HORTICULTURAL SCIENCE
PI ALEXANDRIA
PA 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA
SN 0018-5345
EI 2327-9834
J9 HORTSCIENCE
JI Hortscience
PD APR
PY 2015
VL 50
IS 4
BP 603
EP 608
PG 6
WC Horticulture
SC Agriculture
GA CH5KO
UT WOS:000354074700017
ER
PT J
AU Moore, PP
Hoashi-Erhardt, W
Finn, CE
Martin, RR
Dossett, M
AF Moore, Patrick P.
Hoashi-Erhardt, Wendy
Finn, Chad E.
Martin, Robert R.
Dossett, Michael
TI 'Cascade Harvest' Red Raspberry
SO HORTSCIENCE
LA English
DT Editorial Material
DE Rubus idaeus; fruit breeding; yield; raspberry bushy dwarf virus;
Phytophthora root rot
C1 [Moore, Patrick P.; Hoashi-Erhardt, Wendy] Washington State Univ, Puyallup Res & Extens Ctr, Puyallup, WA 98371 USA.
[Finn, Chad E.; Martin, Robert R.] USDA ARS, Hort Crops Res Unit, Corvallis, OR 97730 USA.
[Dossett, Michael] Agr & Agri Food Canada, Pacific Agri Food Res Ctr, BC Blueberry Council, Agassiz, BC V0M 1A0, Canada.
RP Moore, PP (reprint author), Washington State Univ, Puyallup Res & Extens Ctr, 2606 West Pioneer, Puyallup, WA 98371 USA.
EM moorepp@wsu.edu
NR 4
TC 2
Z9 2
U1 2
U2 16
PU AMER SOC HORTICULTURAL SCIENCE
PI ALEXANDRIA
PA 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA
SN 0018-5345
EI 2327-9834
J9 HORTSCIENCE
JI Hortscience
PD APR
PY 2015
VL 50
IS 4
BP 624
EP 627
PG 4
WC Horticulture
SC Agriculture
GA CH5KO
UT WOS:000354074700021
ER
PT J
AU Zhang, DY
Chen, LP
Zhang, RR
Xu, G
Lan, YB
Hoffmann, WC
Wang, X
Xu, M
AF Zhang Dongyan
Chen Liping
Zhang Ruirui
Xu Gang
Lan Yubin
Hoffmann, Wesley Clint
Wang Xiu
Xu Min
TI Evaluating effective swath width and droplet distribution of aerial
spraying systems on M-18B and Thrush 510G airplanes
SO INTERNATIONAL JOURNAL OF AGRICULTURAL AND BIOLOGICAL ENGINEERING
LA English
DT Article
DE aerial spraying; effective swath width; droplet distribution;
coefficients of variation; agricultural airplane
ID DRIFT
AB Aerial spraying plays an important role in promoting agricultural production and protecting the biological environment due to its flexibility, high effectiveness, and large operational area per unit of time. In order to evaluate the performance parameters of the spraying systems on two fixed wing airplanes M-18B and Thrush 510G, the effective swath width and uniformity of droplet deposition under headwind flight were tested while the planes operated at the altitudes of 5 m and 4 m. The results showed that although wind velocities varied from 0.9 m/s to 4.6 m/s, and the directions of the atomizer switched upward and downward in eight flights, the effective swath widths were kept approximately at 27 m and 15 m for the M-18B and Thrush 510G, respectively, and the latter was more stable. In addition, through analyzing the coefficients of variation (CVs) of droplet distribution, it was found that the CVs of the M-18B were 39.57%, 33.54%, 47.95%, and 59.04% at wind velocities of 0.9, 1.1, 1.4 and 4.6 m/s, respectively, gradually enhancing with the increasing of wind speed; the CVs of Thrush 510G were 79.12%, 46.19%, 14.90%, and 48.69% at wind velocities of 1.3, 2.3, 3.0 and 3.4 m/s, respectively, which displayed the irregularity maybe due to change of instantaneous wind direction. Moreover, in terms of the CVs and features of droplet distribution uniformity for both airplanes in the spray swath, choosing smaller CV (20%-45%) as the standard of estimation, it was found that the Thrush 510G had a better uniform droplet distribution than the M-18B. The results provide a research foundation for promoting the development of aerial spraying in China.
C1 [Zhang Dongyan; Chen Liping; Zhang Ruirui; Xu Gang; Wang Xiu; Xu Min] Beijing Res Ctr Intelligent Equipment Agr, Beijing 100097, Peoples R China.
[Zhang Dongyan; Chen Liping; Zhang Ruirui; Xu Gang; Wang Xiu; Xu Min] Natl Res Ctr Intelligent Equipment Agr, Beijing 100097, Peoples R China.
[Zhang Dongyan; Wang Xiu] Minist Agr, Key Lab Agri Informat, Beijing 100097, Peoples R China.
[Zhang Dongyan; Wang Xiu] Beijing Key Lab Intelligent Equipment Technol Agr, Beijing 100097, Peoples R China.
[Chen Liping; Zhang Ruirui; Xu Gang; Lan Yubin; Hoffmann, Wesley Clint; Xu Min] Sino US Agr Aviat Cooperat Technol Ctr, Beijing, Peoples R China.
[Chen Liping; Zhang Ruirui; Xu Gang; Lan Yubin; Hoffmann, Wesley Clint; Xu Min] Sino US Agr Aviat Cooperat Technol Ctr, College Stn, TX USA.
[Lan Yubin; Hoffmann, Wesley Clint] ARS, USDA, Aerial Applicat Technol Res Unit, College Stn, TX 77840 USA.
RP Chen, LP (reprint author), Room 517,Bldg A,Shuguang Huayuan Middle Rd 11, Beijing, Peoples R China.
EM zhangdy@nercita.org.cn; chenlp@nercita.org.cn; zhangrr@nercita.org.cn;
xug@nercita.org.cn; ylan@scau.edu.cn; clint.hoffmann@ars.usda.gov;
wangx@nercita.org.cn; xum@nercita.org.cn
FU 863 National High-Tech R&D Program of China [2012AA101901]; National
Natural Science Foundation of China [41301471]; China Postdoctoral
Special Foundation [2013T60189]; International Postdoctoral Exchange
Fellowship Program [20130043]
FX We deeply thank the Beidahuang General Aviation Company (BGAC) for
providing the experimental site, aircrafts and corresponding materials,
and also thank reviewers and editors for giving relevant revision
advices for paper improving. The study was funded by the 863 National
High-Tech R&D Program of China (Grant No. 2012AA101901), National
Natural Science Foundation of China (Grant No. 41301471), China
Postdoctoral Special Foundation (Grant No. 2013T60189), and
International Postdoctoral Exchange Fellowship Program (Grant No.
20130043).
NR 23
TC 1
Z9 2
U1 2
U2 9
PU CHINESE ACAD AGRICULTURAL ENGINEERING
PI BEIJING
PA RM 506, 41, MAIZIDIAN ST, CHAOYANG DISTRICT, BEIJING, 100125, PEOPLES R
CHINA
SN 1934-6344
EI 1934-6352
J9 INT J AGR BIOL ENG
JI Int. J. Agric. Biol. Eng.
PD APR
PY 2015
VL 8
IS 2
BP 21
EP 30
DI 10.3965/j.ijabe.20150802.1493
PG 10
WC Agricultural Engineering
SC Agriculture
GA CH4AY
UT WOS:000353974200003
ER
PT J
AU Leskey, TC
Khrimian, A
Weber, DC
Aldrich, JC
Short, BD
Lee, DH
Morrison, WR
AF Leskey, Tracy C.
Khrimian, Ashot
Weber, Donald C.
Aldrich, Jeffrey C.
Short, Brent D.
Lee, Doo-Hyung
Morrison, William R., III
TI Behavioral Responses of the Invasive Halyomorpha halys (StAyenl) to
Traps Baited with Stereoisomeric Mixtures of
10,11-Epoxy-1-bisabolen-3-OL
SO JOURNAL OF CHEMICAL ECOLOGY
LA English
DT Article
DE Semiochemicals; Behavior; Halyomorpha halys; Monitoring; Integrated pest
management; Aggregation pheromones; Hemiptera; Pentatomidae; Invasive
pest
ID MARMORATED STINK BUG; HEMIPTERA-PENTATOMIDAE ANALYSIS; PINK HIBISCUS
MEALYBUG; AGGREGATION PHEROMONE; SEX-PHEROMONE; MURGANTIA-HISTRIONICA;
HARLEQUIN BUG; HETEROPTERA-PENTATOMIDAE; SYNANTHEDON-SCITULA; PEACH
ORCHARDS
AB The brown marmorated stink bug, Halyomorpha halys, is an invasive insect in the United States that is capable of inflicting significant yield losses for fruit, vegetable, and soybean growers. Recently, a male-produced aggregation pheromone of H. halys was identified as a 3.5:1 mixture of (3S,6S,7R,10S)-10,11-epoxy-1-bisabolen-3-ol and (3R,6S,7R,10S)-10,11-epoxy-1-bisabolen-3-ol, two stereoisomers of a natural sesquiterpene with a bisabolane skeleton, potentially existing in 16 stereoisomeric forms. In this study, we assessed attraction to pheromonal and non-pheromonal stereoisomeric mixtures of 10,11-epoxy-1-bisabolen-3-ol, which are easier to synthesize than single isomers, and evaluated dose-dependent responses to attractive mixtures in field trials. Some treatments not containing the natural pheromone components were moderately active in field-trapping studies, signifying that some stereoisomers of 10,11-epoxy-1-bisabolen-3-ol are sufficiently similar to the true pheromone in structure to trigger behavioral responses. Importantly, we found that mixtures of stereoisomers containing pheromone components were also highly attractive to H. halys, even in the presence of multiple "unnatural" stereoisomers. Further, adult and nymphal captures were dose-dependent, regardless of whether the lure contained pheromonal or non-pheromonal components. Our findings of attraction to pheromonal and non-pheromonal stereoisomers and lack of inhibition from non-pheromonal stereoisomers of 10,11-epoxy-1-bisabolen-3-ol increase the flexibility of developing pheromone-based products for H. halys.
C1 [Leskey, Tracy C.; Short, Brent D.; Morrison, William R., III] USDA ARS, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
[Khrimian, Ashot; Weber, Donald C.; Aldrich, Jeffrey C.] USDA ARS, Invas Insect Biocontrol & Behav Lab, Beltsville, MD USA.
[Lee, Doo-Hyung] Gachon Univ, Dept Life Sci, Songnam, Kyeonggi Do, South Korea.
RP Leskey, TC (reprint author), USDA ARS, Appalachian Fruit Res Stn, 45 Wiltshire Rd, Kearneysville, WV 25430 USA.
EM Tracy.Leskey@ars.usda.gov
FU USDA-NIFA SCRI [2011-51181-30937]
FX We thank Sean Wiles, Torri Hancock, John Cullum, Michael Athanas,
Anthony DiMeglio, and Filadelfo Guzman for excellent technical support.
This work was supported in part by USDA-NIFA SCRI # 2011-51181-30937
award. Mention of trade names or commercial products in this publication
is solely for the purpose of providing scientific information and does
not imply recommendation or endorsement by the US Department of
Agriculture.
NR 36
TC 8
Z9 8
U1 2
U2 24
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0098-0331
EI 1573-1561
J9 J CHEM ECOL
JI J. Chem. Ecol.
PD APR
PY 2015
VL 41
IS 4
BP 418
EP 429
DI 10.1007/s10886-015-0566-x
PG 12
WC Biochemistry & Molecular Biology; Ecology
SC Biochemistry & Molecular Biology; Environmental Sciences & Ecology
GA CI0CD
UT WOS:000354402400010
PM 25855524
ER
PT J
AU Torson, AS
Yocum, GD
Rinehart, JP
Kemp, WP
Bowsher, JH
AF Torson, Alex S.
Yocum, George D.
Rinehart, Joseph P.
Kemp, William P.
Bowsher, Julia H.
TI Transcriptional responses to fluctuating thermal regimes underpinning
differences in survival in the solitary bee Megachile rotundata
SO JOURNAL OF EXPERIMENTAL BIOLOGY
LA English
DT Article
DE Chill injury; Fluctuating thermal regime; Megachile rotundata; RNA-seq;
Temperature stress
ID ALFALFA LEAFCUTTING BEE; OXIDATIVE STRESS; HYMENOPTERA-MEGACHILIDAE; ION
HOMEOSTASIS; CHILL-COMA; PHENOCOPY INDUCTION; TEMPERATURE STRESS;
GENE-EXPRESSION; TRADE-OFFS; HEAT-SHOCK
AB The transcriptional responses of insects to long-term, ecologically relevant temperature stress are poorly understood. Long-term exposure to low temperatures, commonly referred to as chilling, can lead to physiological effects collectively known as chill injury. Periodically increasing temperatures during long-term chilling has been shown to increase survival in many insects. However, the transcripts responsible for this increase in survival have never been characterized. Here, we present the first transcriptome-level analysis of increased longevity under fluctuating temperatures during chilling. Overwintering post-diapause quiescent alfalfa leafcutting bees (Megachile rotundata) were exposed to a constant temperature of 6 degrees C, or 6 degrees C with a daily fluctuation to 20 degrees C. RNA was collected at two different time points, before and after mortality rates began to diverge between temperature treatments. Expression analysis identified differentially regulated transcripts between pairwise comparisons of both treatments and time points. Transcripts functioning in ion homeostasis, metabolic pathways and oxidative stress response were up-regulated in individuals exposed to periodic temperature fluctuations during chilling. The differential expression of these transcripts provides support for the hypotheses that fluctuating temperatures protect against chill injury by reducing oxidative stress and returning ion concentrations and metabolic function to more favorable levels. Additionally, exposure to fluctuating temperatures leads to increased expression of transcripts functioning in the immune response and neurogenesis, providing evidence for additional mechanisms associated with increased survival during chilling in M. rotundata.
C1 [Torson, Alex S.; Bowsher, Julia H.] N Dakota State Univ, Dept Biol Sci, Fargo, ND 58108 USA.
[Yocum, George D.; Rinehart, Joseph P.; Kemp, William P.] USDA ARS, Red River Valley Agr Res Ctr, Biosci Res Lab, Fargo, ND 58102 USA.
RP Torson, AS (reprint author), N Dakota State Univ, Dept Biol Sci, POB 6050, Fargo, ND 58108 USA.
EM Alex.S.Torson@ndsu.edu
FU United States Department of Agriculture, North Dakota State University
NSF FORWARD Grant [HRD-0811239]; North Dakota State University
Development Foundation; North Dakota State University Department of
Biological Sciences
FX This research was funded by the United States Department of Agriculture,
North Dakota State University NSF FORWARD Grant HRD-0811239 to J.H.B., a
Gordon A. Larson Agricultural Research Grant form the North Dakota State
University Development Foundation to J.H.B. and North Dakota State
University Department of Biological Sciences.
NR 45
TC 6
Z9 6
U1 3
U2 24
PU COMPANY OF BIOLOGISTS LTD
PI CAMBRIDGE
PA BIDDER BUILDING CAMBRIDGE COMMERCIAL PARK COWLEY RD, CAMBRIDGE CB4 4DL,
CAMBS, ENGLAND
SN 0022-0949
EI 1477-9145
J9 J EXP BIOL
JI J. Exp. Biol.
PD APR
PY 2015
VL 218
IS 7
BP 1060
EP 1068
DI 10.1242/jeb.113829
PG 9
WC Biology
SC Life Sciences & Biomedicine - Other Topics
GA CH5YX
UT WOS:000354113300021
PM 25657206
ER
PT J
AU Devi, MJ
Taliercio, EW
Sinclair, TR
AF Devi, M. Jyostna
Taliercio, Earl W.
Sinclair, Thomas R.
TI Leaf expansion of soybean subjected to high and low atmospheric vapour
pressure deficits
SO JOURNAL OF EXPERIMENTAL BOTANY
LA English
DT Article
DE Expansin; extensin; leaf expansion; soybean; transpiration; vapour
pressure deficit
ID CELL-WALL PROTEINS; TIME RT-PCR; GENE-EXPRESSION; TRANSPIRATION
RESPONSE; GROWTH; ELONGATION; TURGOR; PLANTS; SOIL; CONDUCTANCE
AB Vapour pressure deficit (VPD) is considered an important environmental factor that might affect leaf expansion and transpiration rate (TR) in plants. Two slow-wilting soybean (Glycine max (L.) Merr.) genotypes PI 416937 and PI 471938 along with commercial cultivar Hutcheson were subjected to low (1.2-1.6 kPa) and high VPD (2.8-3 kPa) environments to study their leaf expansion and TR over five days. Among the three genotypes, PI 416937 had the lowest increase in its TR (34%) at high VPD compared with low VPD and the greatest decrease in leaf area (31%). In contrast, Hutcheson had the highest increase in TR (87%) under high VPD and the lowest decrease in leaf expansion rate (18%). Expansin and extensin genes were isolated in PI 416937 to determine if changes in leaf expansion were associated with changes at the molecular level. The four studied genes were all suppressed after five days in the high VPD environment.
C1 [Devi, M. Jyostna; Sinclair, Thomas R.] N Carolina State Univ, Dept Crop Sci, Raleigh, NC 27695 USA.
[Taliercio, Earl W.] ARS, Soybean & Nitrogen Fixat Unit, USDA, Raleigh, NC 27695 USA.
RP Sinclair, TR (reprint author), N Carolina State Univ, Dept Crop Sci, Raleigh, NC 27695 USA.
EM trsincla@ncsu.edu
NR 33
TC 4
Z9 4
U1 2
U2 15
PU OXFORD UNIV PRESS
PI OXFORD
PA GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
SN 0022-0957
EI 1460-2431
J9 J EXP BOT
JI J. Exp. Bot.
PD APR
PY 2015
VL 66
IS 7
BP 1845
EP 1850
DI 10.1093/jxb/eru520
PG 6
WC Plant Sciences
SC Plant Sciences
GA CH2ZG
UT WOS:000353894100012
PM 25618144
ER
PT J
AU Rivera-Chavez, J
Figueroa, M
Gonzalez, MD
Glenn, AE
Mata, R
AF Rivera-Chavez, Jose
Figueroa, Mario
del Carmen Gonzalez, Maria
Glenn, Anthony E.
Mata, Rachel
TI alpha-Glucosidase Inhibitors from a Xylaria feejeensis Associated with
Hintonia latiflora
SO JOURNAL OF NATURAL PRODUCTS
LA English
DT Article
ID ENDOPHYTIC FUNGUS; MOLECULAR DOCKING; METABOLITES
AB Two new compounds, pestalotin 4'-O-methyl-beta-mannopyranoside (1) and 3S,4R-(+)-4-hydroxymellein (2), were isolated from an organic extract of a Xylaria feejeensis, which was isolated as an endophytic fungus from Hintonia latiflora. In addition, the known compounds 3S,4S-(+)-4-hydroxymellein (3), 3S-(+)-8-methoxymellein (4), and the quinone derivatives 2-hydroxy-5-methoxy-3-methylcyclohexa-2,5-diene-1,4-dione (5), 4S,5S,6S-4-hydroxy-3-methoxy-5-methyl-5,6-epoxycyclohex-2-en-1-one (6), and 4R,5R-dihydroxy-3-methoxy-5-methylcyclohexen-2-en-1-one (7) were obtained. The structures of 1 and 2 were elucidated using a set of spectroscopic and spectrometric techniques. The absolute configuration of the stereogenic centers of 1 and 2 was determined using ECD spectroscopy combined with time-dependent density functional theory calculations. In the case of 1, comparison of the experimental and theoretical (3)J(6-7) coupling constants provided further evidence for the stereochemical assignments. Compounds 2 and 3 inhibited Saccharomyces cerevisiae a-glucosidase (alpha GHY), with IC50 values of 441 +/- 23 and 549 +/- 2.5 mu M, respectively. Their activity was comparable to that of acarbose (IC50 = 545 +/- 19 mu M), used as positive control. Molecular docking predicted that both compounds bind to alpha GHY in a site different from the catalytic domain, which could imply an allosteric type of inhibition.
C1 [Rivera-Chavez, Jose; Figueroa, Mario; Mata, Rachel] Univ Nacl Autonoma Mexico, Fac Quim, Mexico City 04510, DF, Mexico.
[del Carmen Gonzalez, Maria] Univ Nacl Autonoma Mexico, Inst Biol, Mexico City 04510, DF, Mexico.
[Glenn, Anthony E.] ARS, Toxicol & Mycotoxin Res Unit, Richard B Russell Res Ctr, USDA, Athens, GA 30605 USA.
RP Mata, R (reprint author), Univ Nacl Autonoma Mexico, Fac Quim, Mexico City 04510, DF, Mexico.
EM rachel@.unammx
FU CONACyT [219765]
FX This work was supported by a grant from CONACyT (219765). We thank I.
Rivero, A. Perez, and S. Cristians for their valuable assistance.
J.R.-C. acknowledges a fellowship from CONACyT to pursue graduate
studies. We are indebted to Direccion General de Computo y de
Tecnologias de Informacion y Comunicacion (DGTIC), UNAM, for providing
the resources to carry out computational calculations through the Miztli
System.
NR 24
TC 6
Z9 6
U1 2
U2 18
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0163-3864
EI 1520-6025
J9 J NAT PROD
JI J. Nat. Prod.
PD APR
PY 2015
VL 78
IS 4
BP 730
EP 735
DI 10.1021/np500897y
PG 6
WC Plant Sciences; Chemistry, Medicinal; Pharmacology & Pharmacy
SC Plant Sciences; Pharmacology & Pharmacy
GA CG9UH
UT WOS:000353665100018
PM 25706243
ER
PT J
AU Cheng, S
Larson, MG
McCabe, EL
Murabito, JM
Rhee, EP
Ho, JE
Jacques, PF
Ghorbani, A
Magnusson, M
Souza, AL
Deik, AA
Pierce, KA
Bullock, K
O'Donnell, CJ
Melander, O
Clish, CB
Vasan, RS
Gerszten, RE
Wang, TJ
AF Cheng, Susan
Larson, Martin G.
McCabe, Elizabeth L.
Murabito, Joanne M.
Rhee, Eugene P.
Ho, Jennifer E.
Jacques, Paul F.
Ghorbani, Anahita
Magnusson, Martin
Souza, Amanda L.
Deik, Amy A.
Pierce, Kerry A.
Bullock, Kevin
O'Donnell, Christopher J.
Melander, Olle
Clish, Clary B.
Vasan, Ramachandran S.
Gerszten, Robert E.
Wang, Thomas J.
TI Distinct metabolomic signatures are associated with longevity in humans
SO NATURE COMMUNICATIONS
LA English
DT Article
ID MITOCHONDRIAL NADP(+)-ISOCITRATE DEHYDROGENASE; GENOME-WIDE ASSOCIATION;
BILE-ACIDS; CARDIOVASCULAR HEALTH; LIFE-SPAN; ISOCITRATE DEHYDROGENASE;
HYPERTROPHY DEVELOPMENT; CAENORHABDITIS-ELEGANS; GLUCOSE-HOMEOSTASIS;
CARDIAC-HYPERTROPHY
AB Alterations in metabolism influence lifespan in experimental models, but data in humans are lacking. Here we use liquid chromatography/mass spectrometry to quantify 217 plasma metabolites and examine their relation to longevity in a large cohort of men and women followed for up to 20 years. We find that, higher concentrations of the citric acid cycle intermediate, isocitrate, and the bile acid, taurocholate, are associated with lower odds of longevity, defined as attaining 80 years of age. Higher concentrations of isocitrate, but not taurocholate, are also associated with worse cardiovascular health at baseline, as well as risk of future cardiovascular disease and death. None of the metabolites identified are associated with cancer risk. Our findings suggest that some, but not all, metabolic pathways related to human longevity are linked to the risk of common causes of death.
C1 [Cheng, Susan; Larson, Martin G.; Murabito, Joanne M.; Ho, Jennifer E.; O'Donnell, Christopher J.; Vasan, Ramachandran S.] NHLBI, Framingham Heart Study, Framingham, MA 01702 USA.
[Cheng, Susan; Larson, Martin G.; Murabito, Joanne M.; Ho, Jennifer E.; O'Donnell, Christopher J.; Vasan, Ramachandran S.] Boston Univ, Sch Med, Framingham, MA 01702 USA.
[Cheng, Susan] Harvard Univ, Sch Med, Brigham & Womens Hosp, Div Cardiovasc, Boston, MA 02115 USA.
[Larson, Martin G.] Boston Univ, Dept Math & Stat, Boston, MA 02115 USA.
[McCabe, Elizabeth L.] Boston Univ, Sch Publ Hlth, Dept Biostat, Boston, MA 02118 USA.
[Murabito, Joanne M.] Boston Univ, Sch Med, Dept Med, Div Gen Internal Med, Boston, MA 02118 USA.
[Rhee, Eugene P.] Harvard Univ, Sch Med, Massachusetts Gen Hosp, Div Renal, Boston, MA 02116 USA.
[Ho, Jennifer E.; Ghorbani, Anahita; O'Donnell, Christopher J.; Gerszten, Robert E.] Harvard Univ, Sch Med, Massachusetts Gen Hosp, Div Cardiol, Boston, MA 02116 USA.
[Ho, Jennifer E.; Vasan, Ramachandran S.] Boston Univ, Sch Med, Dept Med, Div Cardiol, Boston, MA 02118 USA.
[Jacques, Paul F.] Tufts Univ, Jean Mayer US Dept Agr, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Magnusson, Martin; Melander, Olle] Lund Univ, Dept Clin Sci, SE-22100 Lund, Sweden.
[Souza, Amanda L.; Deik, Amy A.; Pierce, Kerry A.; Bullock, Kevin; Clish, Clary B.; Gerszten, Robert E.] Broad Inst MIT & Harvard, Cambridge, MA 02142 USA.
[O'Donnell, Christopher J.] NHLBI, Div Intramural Res, Bethesda, MD 20892 USA.
[Vasan, Ramachandran S.] Boston Univ, Sch Med, Dept Med, Div Prevent Med, Boston, MA 02118 USA.
[Gerszten, Robert E.] Harvard Univ, Sch Med, Massachusetts Gen Hosp, Cardiovasc Res Ctr, Boston, MA 02116 USA.
[Wang, Thomas J.] Vanderbilt Univ, Div Cardiovasc Med, Nashville, TN 37232 USA.
RP Gerszten, RE (reprint author), Harvard Univ, Sch Med, Massachusetts Gen Hosp, Div Cardiol, Boston, MA 02116 USA.
EM rgerszten@partners.org; thomas.j.wang@vanderbilt.edu
OI Ho, Jennifer/0000-0002-7987-4768; Magnusson, Martin/0000-0003-1710-5936;
Ramachandran, Vasan/0000-0001-7357-5970
FU NIH [N01-HC-25195, R00-HL-107642, R01-DK-HL-081572, R01-HL-098280,
U01-HL-107440, R01-AG-29451, K08-DK-090142, K23-HL-116780]; Ellison
Foundation; Lerner Award; Leducq Foundation; American Heart Association
[12IRG9130006]
FX This work was supported by NIH contract N01-HC-25195 and grants
R00-HL-107642 (S.C.), R01-DK-HL-081572 (R.E.G. and T.J.W.),
R01-HL-098280 (R.E.G.), U01-HL-107440 (R.E.G.), R01-AG-29451 (J.M.M.),
K08-DK-090142 (E.P.R.), K23-HL-116780 (J.E.H.), as well as the Ellison
Foundation (S.C.), Lerner Award (S.C.), Leducq Foundation (R.E.G.) and
American Heart Association grant 12IRG9130006 (R.E.G.).
NR 69
TC 9
Z9 9
U1 5
U2 22
PU NATURE PUBLISHING GROUP
PI LONDON
PA MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
SN 2041-1723
J9 NAT COMMUN
JI Nat. Commun.
PD APR
PY 2015
VL 6
AR 6791
DI 10.1038/ncomms7791
PG 9
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CH0IH
UT WOS:000353702500031
PM 25864806
ER
PT J
AU Combs, GF
AF Combs, Gerald F., Jr.
TI Biomarkers of Selenium Status
SO NUTRIENTS
LA English
DT Review
ID GLUTATHIONE-PEROXIDASE-ACTIVITY; NUTRITION INTERVENTION TRIALS;
SELENOPROTEIN P CONCENTRATION; LONG-TERM SUPPLEMENTATION; LEWIS
LUNG-CARCINOMA; PRIMARY LIVER-CANCER; NEW-ZEALAND WOMEN;
PROSTATE-CANCER; CHEMICAL FORM; METHYLSELENINIC ACID
AB The essential trace element, selenium (Se), has multiple biological activities, which depend on the level of Se intake. Relatively low Se intakes determine the expression of selenoenzymes in which it serves as an essential constituent. Higher intakes have been shown to have anti-tumorigenic potential; and very high Se intakes can produce adverse effects. This hierarchy of biological activities calls for biomarkers informative at different levels of Se exposure. Some Se-biomarkers, such as the selenoproteins and particularly GPX3 and SEPP1, provide information about function directly and are of value in identifying nutritional Se deficiency and tracking responses of deficient individuals to Se-treatment. They are useful under conditions of Se intake within the range of regulated selenoprotein expression, e.g., for humans <55 mu g/day and for animals <20 mu g/kg diet. Other Se-biomarkers provide information indirectly through inferences based on Se levels of foods, tissues, urine or feces. They can indicate the likelihood of deficiency or adverse effects, but they do not provide direct evidence of either condition. Their value is in providing information about Se status over a wide range of Se intake, particularly from food forms. There is need for additional Se biomarkers particularly for assessing Se status in non-deficient individuals for whom the prospects of cancer risk reduction and adverse effects risk are the primary health considerations. This would include determining whether supranutritional intakes of Se may be required for maximal selenoprotein expression in immune surveillance cells. It would also include developing methods to determine low molecular weight Se-metabolites, i.e., selenoamino acids and methylated Se-metabolites, which to date have not been detectable in biological specimens. Recent analytical advances using tandem liquid chromatography-mass spectrometry suggest prospects for detecting these metabolites.
C1 USDA ARS, Grand Forks Human Nutr Res Ctr, Grand Forks, ND 58202 USA.
RP Combs, GF (reprint author), USDA ARS, Grand Forks Human Nutr Res Ctr, 2420 2nd Ave N, Grand Forks, ND 58202 USA.
EM gerald.combs@ars.usda.gov
NR 145
TC 30
Z9 30
U1 8
U2 46
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 2072-6643
J9 NUTRIENTS
JI Nutrients
PD APR
PY 2015
VL 7
IS 4
BP 2209
EP 2236
DI 10.3390/nu7042209
PG 28
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA CH0KY
UT WOS:000353709800010
PM 25835046
ER
PT J
AU Chetta, KE
Hair, AB
Hawthorne, KM
Abrams, SA
AF Chetta, Katherine E.
Hair, Amy B.
Hawthorne, Keli M.
Abrams, Steven A.
TI Serum Phosphorus Levels in Premature Infants Receiving a Donor Human
Milk Derived Fortifier
SO NUTRIENTS
LA English
DT Article
ID BIRTH-WEIGHT; NECROTIZING ENTEROCOLITIS; PRETERM INFANTS; PRODUCTS;
FORMULA; DIET
AB An elevated serum phosphorus (P) has been anecdotally described in premature infants receiving human milk fortified with donor human milk-derived fortifier (HMDF). No studies have prospectively investigated serum P in premature infants receiving this fortification strategy. In this single center prospective observational cohort study, extremely premature infants <= 1250 grams (g) birth weight (BW) were fed an exclusive human milk-based diet receiving HMDF and serum P levels were obtained. We evaluated 93 infants with a mean gestational age of 27.5 +/- 2.0 weeks (Mean +/- SD) and BW of 904 +/- 178 g. Seventeen infants (18.3%) had at least one high serum P level with a mean serum P of 9.2 +/- 1.1 mg/dL occurring at 19 +/- 11 days of life. For all infants, the highest serum P was inversely correlated to the day of life of the infant (p < 0.001, R-2 = 0.175) and positively correlated with energy density of HMDF (p = 0.035). Serum P was not significantly related to gender, BW, gestational age, or days to full feeds. We conclude that the incidence of hyperphosphatemia was mild and transient in this population. The risk decreased with infant age and was unrelated to gender, BW, or ethnicity.
C1 [Chetta, Katherine E.; Hair, Amy B.; Hawthorne, Keli M.; Abrams, Steven A.] Texas Childrens Hosp, Baylor Coll Med, USDA ARS Childrens Nutr Res Ctr, Dept Pediat,Sect Neonatol, Houston, TX 77030 USA.
RP Chetta, KE (reprint author), Texas Childrens Hosp, Baylor Coll Med, USDA ARS Childrens Nutr Res Ctr, Dept Pediat,Sect Neonatol, Houston, TX 77030 USA.
EM kewiley@bcm.edu; abhair@bcm.edu; kelih@bcm.edu; sabrams@bcm.edu
OI Chetta, Katherine E/0000-0002-4669-6723; Hair, Amy/0000-0001-7570-0667;
Abrams, Steven/0000-0003-4972-9233
FU USDA/ARS [58-6250-6-001]; National Center for Research Resources General
Clinical Research for Children [RR00188]
FX We would like to thank Pam Gordon RNC-NIC and Geneva Shores RNC-LRN for
their dedication to the project. Funding source: This project has been
funded in part with federal funds from the USDA/ARS under Cooperative
Agreement 58-6250-6-001 and National Center for Research Resources
General Clinical Research for Children Grant RR00188. This work is a
publication of the Department of Pediatrics, Baylor College of Medicine,
and Texas Children's Hospital (Houston, TX, USA).
NR 17
TC 1
Z9 1
U1 0
U2 3
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 2072-6643
J9 NUTRIENTS
JI Nutrients
PD APR
PY 2015
VL 7
IS 4
BP 2562
EP 2573
DI 10.3390/nu7042562
PG 12
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA CH0KY
UT WOS:000353709800030
PM 25912036
ER
PT J
AU Lan, W
Lu, FC
Regner, M
Zhu, YM
Rencoret, J
Ralph, SA
Zakai, UI
Morreel, K
Boerjan, W
Ralph, J
AF Lan, Wu
Lu, Fachuang
Regner, Matthew
Zhu, Yimin
Rencoret, Jorge
Ralph, Sally A.
Zakai, Uzma I.
Morreel, Kris
Boerjan, Wout
Ralph, John
TI Tricin, a Flavonoid Monomer in Monocot Lignification
SO PLANT PHYSIOLOGY
LA English
DT Article
ID LIGNIN MODEL COMPOUNDS; WHEAT-STRAW; COUPLING REACTIONS; BIOMIMETIC
ROUTE; OXIDE OXIDATION; ERYTHRO RATIOS; NMR METHOD; ALCOHOL;
FLAVONOLIGNANS; BIOSYNTHESIS
AB Tricin was recently discovered in lignin preparations from wheat (Triticum aestivum) straw and subsequently in all monocot samples examined. To provide proof that tricin is involved in lignification and establish the mechanism by which it incorporates into the lignin polymer, the 4'-O- beta-coupling products of tricin with the monolignols (p-coumaryl, coniferyl, and sinapyl alcohols) were synthesized along with the trimer that would result from its 4'-O-beta-couplingwith sinapyl alcohol and then coniferyl alcohol. Tricin was also found to cross couple with monolignols to form tricin-(4'-O-beta)-linked dimers in biomimetic oxidations using peroxidase/hydrogen peroxide or silver (I) oxide. Nuclear magnetic resonance characterization of gel permeation chromatography-fractionated acetylated maize (Zeamays) lignin revealed that the tricin moieties are found in even the highest molecular weight fractions, ether linked to lignin units, demonstrating that tricin is indeed incorporated into the lignin polymer. These findings suggest that tricin is fully compatible with lignification reactions, is an authentic lignin monomer, and, because it can only start a lignin chain, functions as a nucleation site for lignification in monocots. This initiation role helps resolve a long-standing dilemma that monocot lignin chains do not appear to be initiated by monolignol homodehydrodimerization as they are in dicots that have similar syringyl-guaiacyl compositions. The term flavonolignin is recommended for the racemic oligomers and polymers of monolignols that start from tricin (or incorporate other flavonoids) in the cell wall, in analogy with the existing term flavonolignan that is used for the low-molecular mass compounds composed of flavonoid and lignan moieties.
C1 [Lan, Wu; Lu, Fachuang; Regner, Matthew; Zhu, Yimin; Rencoret, Jorge; Zakai, Uzma I.; Ralph, John] Univ Wisconsin, Wisconsin Energy Inst, Great Lakes Bioenergy Res Ctr, Dept Energy, Madison, WI 53726 USA.
[Lan, Wu; Ralph, John] Univ Wisconsin, Dept Biol Syst Engn, Madison, WI 53726 USA.
[Lu, Fachuang; Regner, Matthew; Ralph, John] Univ Wisconsin, Dept Biochem, Madison, WI 53726 USA.
[Ralph, Sally A.] US Forest Serv, Forest Prod Lab, Madison, WI 53726 USA.
[Morreel, Kris; Boerjan, Wout] Univ Ghent, Dept Plant Syst Biol, Vlaams Inst Biotechnol, B-9052 Ghent, Belgium.
[Morreel, Kris; Boerjan, Wout] Univ Ghent, Dept Plant Biotechnol & Bioinformat, B-9052 Ghent, Belgium.
RP Lu, FC (reprint author), Univ Wisconsin, Wisconsin Energy Inst, Great Lakes Bioenergy Res Ctr, Dept Energy, Madison, WI 53726 USA.
EM fachuanglu@wisc.edu; jralph@wisc.edu
RI RENCORET, JORGE/E-1747-2013;
OI RENCORET, JORGE/0000-0003-2728-7331; Boerjan, Wout/0000-0003-1495-510X
FU Department of Energy Great Lakes Bioenergy Research Center
[DE-FC02-07ER64494]; Ghent University [01MRB510W]
FX This work was supported by the Department of Energy Great Lakes
Bioenergy Research Center (grant no. DE-FC02-07ER64494) and the
Multidisciplinary Research Partnership Biotechnology for a Sustainable
Economy (grant no. 01MRB510W) of Ghent University.
NR 60
TC 36
Z9 37
U1 9
U2 81
PU AMER SOC PLANT BIOLOGISTS
PI ROCKVILLE
PA 15501 MONONA DRIVE, ROCKVILLE, MD 20855 USA
SN 0032-0889
EI 1532-2548
J9 PLANT PHYSIOL
JI Plant Physiol.
PD APR
PY 2015
VL 167
IS 4
BP 1284
EP U265
DI 10.1104/pp.114.253757
PG 22
WC Plant Sciences
SC Plant Sciences
GA CI0PC
UT WOS:000354438500008
PM 25667313
ER
PT J
AU Allen, DK
Bates, PD
Tjellstrom, H
AF Allen, Doug K.
Bates, Philip D.
Tjellstroem, Henrik
TI Tracking the metabolic pulse of plant lipid production with isotopic
labeling and flux analyses: Past, present and future
SO PROGRESS IN LIPID RESEARCH
LA English
DT Review
DE Metabolic flux analysis; Isotopic labeling; Acyl editing; Central
metabolism; Mass spectrometry
ID FATTY-ACID SYNTHESIS; TANDEM MASS-SPECTROMETRY; HETEROTROPHIC
ARABIDOPSIS CELLS; DEVELOPING SOYBEAN COTYLEDONS; BIDIRECTIONAL REACTION
STEPS; BRASSICA-NAPUS EMBRYOS; ACYL CARRIER PROTEIN;
GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ACTIVITY; CENTRAL
CARBOHYDRATE-METABOLISM; DEVELOPING SAFFLOWER SEEDS
AB Metabolism is comprised of networks of chemical transformations, organized into integrated biochemical pathways that are the basis of cellular operation, and function to sustain life. Metabolism, and thus life, is not static. The rate of metabolites transitioning through biochemical pathways (i.e., flux) determines cellular phenotypes, and is constantly changing in response to genetic or environmental perturbations. Each change evokes a response in metabolic pathway flow, and the quantification of fluxes under varied conditions helps to elucidate major and minor routes, and regulatory aspects of metabolism. To measure fluxes requires experimental methods that assess the movements and transformations of metabolites without creating artifacts. Isotopic labeling fills this role and is a long-standing experimental approach to identify pathways and quantify their metabolic relevance in different tissues or under different conditions. The application of labeling techniques to plant science is however far from reaching it potential. In light of advances in genetics and molecular biology that provide a means to alter metabolism, and given recent improvements in instrumentation, computational tools and available isotopes, the use of isotopic labeling to probe metabolism is becoming more and more powerful. We review the principal analytical methods for isotopic labeling with a focus on seminal studies of pathways and fluxes in lipid metabolism and carbon partitioning through central metabolism. Central carbon metabolic steps are directly linked to lipid production by serving to generate the precursors for fatty acid biosynthesis and lipid assembly. Additionally some of the ideas for labeling techniques that may be most applicable for lipid metabolism in the future were originally developed to investigate other aspects of central metabolism. We conclude by describing recent advances that will play an important future role in quantifying flux and metabolic operation in plant tissues. Published by Elsevier Ltd.
C1 [Allen, Doug K.] ARS, USDA, St Louis, MO 63132 USA.
[Allen, Doug K.] Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA.
[Bates, Philip D.] Univ So Mississippi, Dept Chem & Biochem, Hattiesburg, MS 39406 USA.
[Tjellstroem, Henrik] Michigan State Univ, Dept Plant Biol, E Lansing, MI 48824 USA.
[Tjellstroem, Henrik] Michigan State Univ, Great Lakes Bioenergy Res Ctr, E Lansing, MI 48824 USA.
RP Allen, DK (reprint author), ARS, USDA, Donald Danforth Plant Sci Ctr, 975 North Watson Rd, St Louis, MO 63132 USA.
EM doug.allen@ars.usda.gov
RI Bates, Philip/I-7550-2013; Allen, Doug/M-2836-2013
OI Bates, Philip/0000-0002-1291-3363; Allen, Doug/0000-0001-8599-8946
FU Department of Energy [DE-AR0000202]; Great Lakes Bioenergy Research
Center [DE-FC02-07ER64494]; National Science Foundation [EF-1105249];
USDA-ARS
FX We gratefully acknowledge conversations with Drs. John Ohlrogge and Jan
Jaworski on topics related to the review and its revision. Work in the
authors' labs was supported by a Department of Energy grant
(DE-AR0000202; D.K.A.) and the Great Lakes Bioenergy Research Center
Cooperative Agreement (DE-FC02-07ER64494; H.T.), the National Science
Foundation (EF-1105249; D.K.A.), and the USDA-ARS. Any product or
trademark mentioned here does not imply a warranty, guarantee, or
endorsement by the authors or their affiliations over other suitable
products.
NR 332
TC 15
Z9 15
U1 3
U2 37
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0163-7827
J9 PROG LIPID RES
JI Prog. Lipid Res.
PD APR
PY 2015
VL 58
BP 97
EP 120
DI 10.1016/j.plipres.2015.02.002
PG 24
WC Biochemistry & Molecular Biology; Nutrition & Dietetics
SC Biochemistry & Molecular Biology; Nutrition & Dietetics
GA CH6JH
UT WOS:000354142400007
PM 25773881
ER
PT J
AU Ching, KH
He, XH
Stanker, LH
Lin, AV
McGarvey, JA
Hnasko, R
AF Ching, Kathryn H.
He, Xiaohua
Stanker, Larry H.
Lin, Alice V.
McGarvey, Jeffery A.
Hnasko, Robert
TI Detection of Shiga Toxins by Lateral Flow Assay
SO TOXINS
LA English
DT Article
ID ESCHERICHIA-COLI O157-H7; HEMOLYTIC-UREMIC SYNDROME; UNITED-STATES;
INFECTIONS; DISEASE; VARIANT; IDENTIFICATION; EPIDEMIOLOGY; PREVALENCE;
PATHOGENS
AB Shiga toxin-producing Escherichia coli (STEC) produce shiga toxins (Stxs) that can cause human disease and death. The contamination of food products with STEC represents a food safety problem that necessitates rapid and effective detection strategies to mitigate risk. In this manuscript, we report the development of a colorimetric lateral flow assay (LFA) for the rapid detection of Stxs in <10 min using a pair of monoclonal antibodies that bind epitopes common to Stx1 and six Stx2 variants. This LFA provides a rapid and sensitive test for the detection of Stxs directly from STEC culture supernatants or at risk food samples with a 0.1 ng/mL limit of detection (LOD) for Stx2a. This Stx LFA is applicable for use in the rapid evaluation of Stx production from cultured E. coli strains or as a tool to augment current methods as part of food safety testing.
C1 [Ching, Kathryn H.; Lin, Alice V.; Hnasko, Robert] ARS, Produce Safety & Microbiol Res Unit, USDA, Albany, CA 94710 USA.
[He, Xiaohua; Stanker, Larry H.; McGarvey, Jeffery A.] ARS, Foodborne Toxin Detect & Prevent Res Unit, USDA, Albany, CA 94710 USA.
RP Hnasko, R (reprint author), ARS, Produce Safety & Microbiol Res Unit, USDA, 800 Buchanan St, Albany, CA 94710 USA.
EM kathryn.ching@ars.usda.gov; xiaohua.he@ars.usda.gov;
larry.stanker@ars.usda.gov; alice.lin@ars.usda.gov;
jeffery.mcgarvey@ars.usda.gov; robert.hnasko@ars.usda.gov
FU USDA-ARS National Program in Animal Health (CRIS) [2030-32000-009-00];
Food Safety (CRIS) [2030-42000-048-00]
FX This research was supported and administered under the USDA-ARS National
Program in Animal Health (CRIS # 2030-32000-009-00) and Food Safety
(CRIS # 2030-42000-048-00). The USDA is an equal opportunity provider
and employer.
NR 32
TC 2
Z9 2
U1 2
U2 3
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 2072-6651
J9 TOXINS
JI Toxins
PD APR
PY 2015
VL 7
IS 4
BP 1163
EP 1173
DI 10.3390/toxins7041163
PG 11
WC Toxicology
SC Toxicology
GA CH3XG
UT WOS:000353963700011
PM 25855129
ER
PT J
AU Freedman, LS
Commins, JM
Moler, JE
Willett, W
Tinker, LF
Subar, AF
Spiegelman, D
Rhodes, D
Potischman, N
Neuhouser, ML
Moshfegh, AJ
Kipnis, V
Arab, L
Prentice, RL
AF Freedman, Laurence S.
Commins, John M.
Moler, James E.
Willett, Walter
Tinker, Lesley F.
Subar, Amy F.
Spiegelman, Donna
Rhodes, Donna
Potischman, Nancy
Neuhouser, Marian L.
Moshfegh, Alanna J.
Kipnis, Victor
Arab, Lenore
Prentice, Ross L.
TI Pooled Results From 5 Validation Studies of Dietary Self-Report
Instruments Using Recovery Biomarkers for Potassium and Sodium Intake
SO AMERICAN JOURNAL OF EPIDEMIOLOGY
LA English
DT Review
DE attenuation factors; calibration models; dietary measurement error; food
frequency questionnaire; 24-hour recall; underreporting
ID FOOD FREQUENCY QUESTIONNAIRE; DOUBLY LABELED WATER; ENERGY-EXPENDITURE;
MEASUREMENT ERROR; INDIVIDUALS; COLLECTION; BALANCE; PROTEIN;
METAANALYSES; NUTRITION
AB We pooled data from 5 large validation studies (1999-2009) of dietary self-report instruments that used recovery biomarkers as referents, to assess food frequency questionnaires (FFQs) and 24-hour recalls (24HRs). Here we report on total potassium and sodium intakes, their densities, and their ratio. Results were similar by sex but were heterogeneous across studies. For potassium, potassium density, sodium, sodium density, and sodium: potassium ratio, average correlation coefficients for the correlation of reported intake with true intake on the FFQs were 0.37, 0.47, 0.16, 0.32, and 0.49, respectively. For the same nutrients measured with a single 24HR, they were 0.47, 0.46, 0.32, 0.31, and 0.46, respectively, rising to 0.56, 0.53, 0.41, 0.38, and 0.60 for the average of three 24HRs. Average underreporting was 5%-6% with an FFQ and 0%-4% with a single 24HR for potassium but was 28%-39% and 4%-13%, respectively, for sodium. Higher body mass index was related to underreporting of sodium. Calibration equations for true intake that included personal characteristics provided improved prediction, except for sodium density. In summary, self-reports capture potassium intake quite well but sodium intake less well. Using densities improves the measurement of potassium and sodium on an FFQ. Sodium: potassium ratio is measured much better than sodium itself on both FFQs and 24HRs.
C1 [Freedman, Laurence S.; Commins, John M.; Moler, James E.] Informat Management Syst Inc, Rockville, MD USA.
[Freedman, Laurence S.] Gertner Inst Epidemiol & Hlth Policy Res, Biostat Unit, Tel Hashomer, Israel.
[Arab, Lenore] Univ Calif Los Angeles, David Geffen Sch Med, Div Gen Internal Med, Los Angeles, CA 90095 USA.
[Rhodes, Donna; Moshfegh, Alanna J.] ARS, Beltsville Human Nutr Res Ctr, USDA, Beltsville, MD USA.
[Kipnis, Victor] NCI, Biometry Res Grp, Div Canc Prevent, Bethesda, MD 20892 USA.
[Tinker, Lesley F.; Neuhouser, Marian L.; Prentice, Ross L.] Fred Hutchinson Canc Res Ctr, Div Publ Hlth Sci, Seattle, WA 98104 USA.
[Subar, Amy F.; Potischman, Nancy] NCI, Div Canc Control & Populat Sci, Bethesda, MD 20892 USA.
[Willett, Walter; Spiegelman, Donna] Harvard Univ, Sch Publ Hlth, Dept Epidemiol, Boston, MA 02115 USA.
[Willett, Walter; Spiegelman, Donna] Harvard Univ, Sch Publ Hlth, Dept Nutr, Boston, MA 02115 USA.
[Spiegelman, Donna] Harvard Univ, Sch Publ Hlth, Dept Biostat, Boston, MA 02115 USA.
[Willett, Walter] Brigham & Womens Hosp, Dept Med, Channing Div Network Med, Boston, MA 02115 USA.
[Willett, Walter] Harvard Univ, Sch Med, Boston, MA USA.
RP Freedman, LS (reprint author), Chaim Sheba Med Ctr, Biostat Unit, Gertner Inst Epidemiol & Hlth Policy Res, IL-52621 Tel Hashomer, Israel.
EM lsf@actcom.co.il
OI Moler, James/0000-0001-8738-6898
FU National Heart, Lung, and Blood Institute [HHSN268201100046C,
HHSN268201100001C, HHSN268201100002C, HHSN268201100003C,
HHSN268201100004C, HHSN271201100004C]
FX The Women's Health Initiative (WHI) was funded by the National Heart,
Lung, and Blood Institute through contracts HHSN268201100046C,
HHSN268201100001C, HHSN268201100002C, HHSN268201100003C,
HHSN268201100004C, and HHSN271201100004C.
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PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0002-9262
EI 1476-6256
J9 AM J EPIDEMIOL
JI Am. J. Epidemiol.
PD APR 1
PY 2015
VL 181
IS 7
BP 473
EP 487
DI 10.1093/aje/kwu325
PG 15
WC Public, Environmental & Occupational Health
SC Public, Environmental & Occupational Health
GA CH1XD
UT WOS:000353815100005
PM 25787264
ER
PT J
AU Hatmaker, EA
Wadl, PA
Mantooth, K
Scheffler, BE
Ownley, BH
Trigiano, RN
AF Hatmaker, E. Anne
Wadl, Phillip A.
Mantooth, Kristie
Scheffler, Brian E.
Ownley, Bonnie H.
Trigiano, Robert N.
TI DEVELOPMENT OF MICROSATELLITES FROM FOTHERGILLA XINTERMEDIA
(HAMAMELIDACEAE) AND CROSS TRANSFER TO FOUR OTHER GENERA WITHIN
HAMAMELIDACEAE
SO APPLICATIONS IN PLANT SCIENCES
LA English
DT Article
DE Corylopsis; Hamamelidaceae; Hamamelis; Loropetalum; Parrotia; simple
sequence repeats
ID CULTIVARS
AB Premise of the study: We developed microsatellites from Fothergilla Xintermedia to establish loci capable of distinguishing species and cultivars, and to assess genetic diversity for use by ornamental breeders and to transfer within Hamamelidaceae.
Methods and Results: We sequenced a small insert genomic library enriched for microsatellites to develop 12 polymorphic microsatellite loci. The number of alleles detected ranged from four to 15 across five genera within Hamamelidaceae. Shannon's information index ranged from 0.07 to 0.14.
Conclusions: These microsatellite loci provide a set of markers to evaluate genetic diversity of natural and cultivated collections and assist ornamental plant breeders for genetic studies of five popular genera of woody ornamental plants.
C1 [Hatmaker, E. Anne; Wadl, Phillip A.; Mantooth, Kristie; Ownley, Bonnie H.; Trigiano, Robert N.] Univ Tennessee, Dept Entomol & Plant Pathol, Knoxville, TN 37996 USA.
[Scheffler, Brian E.] ARS, USDA, Genom & Bioinformat Res Unit, Stoneville, MS 38776 USA.
RP Wadl, PA (reprint author), Univ Tennessee, Dept Entomol & Plant Pathol, 2505 EJ Chapman Dr, Knoxville, TN 37996 USA.
EM pwadl@utk.edu
FU United States Department of Agriculture [58-6404-1637]
FX This study was supported by the United States Department of Agriculture
(grant no. 58-6404-1637). Mention of commercial products in this article
is solely for the purpose of providing specific information and does not
imply recommendation by The University of Tennessee or the United States
Department of Agriculture. We thank the J. C. Raulston Arboretum at
North Carolina State University, Spring Grove Cemetery and Arboretum,
and the Arnold Arboretum of Harvard University for plant tissue.
NR 15
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PU BOTANICAL SOC AMER INC
PI ST LOUIS
PA PO BOX 299, ST LOUIS, MO 63166-0299 USA
SN 2168-0450
J9 APPL PLANT SCI
JI Appl. Plant Sci.
PD APR
PY 2015
VL 3
IS 4
AR 1400123
DI 10.3732/apps.1400123
PG 4
WC Plant Sciences
SC Plant Sciences
GA CG8PJ
UT WOS:000353570700005
ER
PT J
AU Yildiz, M
Cuevas, HE
Sensoy, S
Erdinc, C
Baloch, FS
AF Yildiz, Mehtap
Cuevas, Hugo E.
Sensoy, Suat
Erdinc, Ceknas
Baloch, Faheem S.
TI Transferability of Cucurbita SSR markers for genetic diversity
assessment of Turkish bottle gourd (Lagenaria siceraria) genetic
resources
SO BIOCHEMICAL SYSTEMATICS AND ECOLOGY
LA English
DT Article
DE Bottle gourd; Cucurbits; Genetic diversity; Marker transferability;
Molecular markers
ID AMPLIFIED POLYMORPHIC DNA; MORPHOLOGICAL CHARACTERIZATION;
POPULATION-STRUCTURE; WILD RELATIVES; MOLINA STANDL.; RAPD MARKERS;
LINKAGE MAP; COLLECTION; LANDRACES; SRAP
AB The genetic diversity present in crop landraces represents a valuable genetic resource for breeding and genetic studies. Bottle gourd (Lagenaria siceraria) landraces in Turkey are highly genetically diverse. However, the limited genomic resources available for this crop hinder the molecular characterization of Turkish bottle gourd germplasm for its adequate conservation and management. Therefore, we evaluated the efficacy of 40 SSR markers from major cucurbit crops (Cucurbita pepo L. and Cucurbita moschata L.) in 30 bottle gourd landraces, together with 16 SRAP primer combinations. In addition, we compared the genetic relationship between bottle gourd and 31 other cucurbit accessions (11 Cucurbita maxima, 3 C. moschata, 5 C. pepo subsp. ovifera, 10 C. pepo and 2 Luffa cylindrica). Twenty-seven Cucurbita SSR markers showed transferability to bottle gourd. SSR markers amplified 59 alleles, in bottle gourd genome with an average of 1.64 alleles per locus. Together, SSR and SRAP markers amplified 453 fragments across the 61 accessions, and clearly discriminated L. siceraria and L. cylindrica from the other cucurbit species. Genetic diversity analysis separated edible cucurbit from ornamentals, while population structure analysis classified L. siceraria in two subpopulations defined by fruit shape, rather than geographical origin. The results indicated that the genomic resources available for Cucurbita species are valuable to study and preserve the genetic diversity of bottle gourd in Turkey. (C) 2015 Elsevier Ltd. All rights reserved.
C1 [Yildiz, Mehtap; Erdinc, Ceknas] Yuzuncu Yil Univ, Fac Agr, Dept Agr Biotechnol, TR-65080 Van, Turkey.
[Cuevas, Hugo E.] USDA ARS, Trop Agr Res Stn, Mayaguez, PR 00680 USA.
[Sensoy, Suat] Yuzuncu Yil Univ, Fac Agr, Dept Hort, TR-65080 Van, Turkey.
[Baloch, Faheem S.] Abant Izzet Baysal Univ, Fac Agr & Nat Sci, Dept Field Crops, Bolu, Turkey.
RP Yildiz, M (reprint author), Yuzuncu Yil Univ, Fac Agr, Dept Agr Biotechnol, TR-65080 Van, Turkey.
EM mehtapyildiz@gmail.com
OI BALOCH, Faheem Shehzad/0000-0002-7470-0080
FU Scientific Research Projects of Yuzuncu Yil University (BAP Project)
[2010-ZF-B012]
FX This work was supported by Scientific Research Projects of Yuzuncu Yil
University (BAP Project number: 2010-ZF-B012). We would like to express
our gratitude to Dr. Kazim Abak and Dr. Ertan S. Kurtar for providing
some seed samples.
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PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0305-1978
EI 1873-2925
J9 BIOCHEM SYST ECOL
JI Biochem. Syst. Ecol.
PD APR
PY 2015
VL 59
BP 45
EP 53
DI 10.1016/j.bse.2015.01.006
PG 9
WC Biochemistry & Molecular Biology; Ecology; Evolutionary Biology
SC Biochemistry & Molecular Biology; Environmental Sciences & Ecology;
Evolutionary Biology
GA CH1AM
UT WOS:000353753500008
ER
PT J
AU Yang, J
Farmer, LM
Agyekum, AAA
Hirschi, KD
AF Yang, Jian
Farmer, Lisa M.
Agyekum, Abia A. A.
Hirschi, Kendal D.
TI Detection of dietary plant-based small RNAs in animals
SO CELL RESEARCH
LA English
DT Letter
ID MICRORNAS
C1 [Yang, Jian; Farmer, Lisa M.; Agyekum, Abia A. A.; Hirschi, Kendal D.] USDA ARS, Childrens Nutr Res Ctr, Baylor Coll Med, Houston, TX 77030 USA.
RP Hirschi, KD (reprint author), USDA ARS, Childrens Nutr Res Ctr, Baylor Coll Med, 1100 Bates St, Houston, TX 77030 USA.
EM kendalh@bcm.edu
FU NICHD NIH HHS [T32 HD071839, 5T32HD071839-02]
NR 13
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U1 4
U2 18
PU INST BIOCHEMISTRY & CELL BIOLOGY
PI SHANGHAI
PA SIBS, CAS, 319 YUEYANG ROAD, SHANGHAI, 200031, PEOPLES R CHINA
SN 1001-0602
EI 1748-7838
J9 CELL RES
JI Cell Res.
PD APR
PY 2015
VL 25
IS 4
BP 517
EP 520
DI 10.1038/cr.2015.26
PG 4
WC Cell Biology
SC Cell Biology
GA CH3GN
UT WOS:000353917200008
PM 25721324
ER
PT J
AU Fahlgren, N
Gehan, MA
Baxter, I
AF Fahlgren, Noah
Gehan, Malia A.
Baxter, Ivan
TI Lights, camera, action: high-throughput plant phenotyping is ready for a
close-up
SO CURRENT OPINION IN PLANT BIOLOGY
LA English
DT Review
ID NATURAL GENETIC-VARIATION; ARABIDOPSIS-THALIANA; IMAGE-ANALYSIS;
CHLOROPHYLL FLUORESCENCE; ANALYSIS PLATFORM; LEAF GROWTH; STRESS;
TOLERANCE; PHENOMICS; DISEASES
AB Anticipated population growth, shifting demographics, and environmental variability over the next century are expected to threaten global food security. In the face of these challenges, crop yield for food and fuel must be maintained and improved using fewer input resources. In recent years, genetic tools for profiling crop germplasm has benefited from rapid advances in DNA sequencing, and now similar advances are needed to improve the throughput of plant phenotyping. We highlight recent developments in high-throughput plant phenotyping using robotic-assisted imaging platforms and computer vision-assisted analysis tools.
C1 [Fahlgren, Noah; Gehan, Malia A.] Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA.
[Baxter, Ivan] ARS, USDA, Donald Danforth Plant Sci Ctr, Washington, DC USA.
RP Fahlgren, N (reprint author), Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA.
EM nfahlgren@danforthcenter.org; mgehan@danforthcenter.org
RI Baxter, Ivan/A-1052-2009; Fahlgren, Noah/D-4404-2011;
OI Baxter, Ivan/0000-0001-6680-1722; Fahlgren, Noah/0000-0002-5597-4537;
Gehan, Malia/0000-0002-3238-2627
FU USDA NIFA [MOW-2012-01361]; NSF [IIA-1355406]; NSF PGRP [IOS-1202682];
USDA ARS Intramural Funds; DOE [DOE-SC-008796]
FX Our apologies to the authors whose work was not mentioned here due to
limited space. NF is supported by a fellowship from USDA NIFA (award
number MOW-2012-01361) and by NSF (award number IIA-1355406). MAG is
supported by a fellowship from NSF PGRP (award number IOS-1202682). IB
is supported by USDA ARS Intramural Funds and a grant from the DOE
(award number DOE-SC-008796).
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PU CURRENT BIOLOGY LTD
PI LONDON
PA 84 THEOBALDS RD, LONDON WC1X 8RR, ENGLAND
SN 1369-5266
EI 1879-0356
J9 CURR OPIN PLANT BIOL
JI Curr. Opin. Plant Biol.
PD APR
PY 2015
VL 24
BP 93
EP 99
DI 10.1016/j.pbi.2015.02.006
PG 7
WC Plant Sciences
SC Plant Sciences
GA CH1AS
UT WOS:000353754100014
PM 25733069
ER
PT J
AU Lipka, AE
Kandianis, CB
Hudson, ME
Yu, JM
Drnevich, J
Bradbury, PJ
Gore, MA
AF Lipka, Alexander E.
Kandianis, Catherine B.
Hudson, Matthew E.
Yu, Jianming
Drnevich, Jenny
Bradbury, Peter J.
Gore, Michael A.
TI From association to prediction: statistical methods for the dissection
and selection of complex traits in plants
SO CURRENT OPINION IN PLANT BIOLOGY
LA English
DT Review
ID GENOME-WIDE ASSOCIATION; STRUCTURED POPULATIONS; GENETIC ARCHITECTURE;
QUANTITATIVE TRAITS; RIDGE-REGRESSION; MODEL APPROACH; MAIZE; DISCOVERY;
PROSPECTS; LOCI
AB Quantification of genotype-to-phenotype associations is central to many scientific investigations, yet the ability to obtain consistent results may be thwarted without appropriate statistical analyses. Models for association can consider confounding effects in the materials and complex genetic interactions. Selecting optimal models enables accurate evaluation of associations between marker loci and numerous phenotypes including gene expression. Significant improvements in QTL discovery via association mapping and acceleration of breeding cycles through genomic selection are two successful applications of models using genome-wide markers. Given recent advances in genotyping and phenotyping technologies, further refinement of these approaches is needed to model genetic architecture more accurately and run analyses in a computationally efficient manner, all while accounting for false positives and maximizing statistical power.
C1 [Lipka, Alexander E.; Hudson, Matthew E.] Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
[Kandianis, Catherine B.] Michigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA.
[Kandianis, Catherine B.; Gore, Michael A.] Cornell Univ, Sch Integrat Plant Sci, Plant Breeding & Genet Sect, Ithaca, NY 14853 USA.
[Yu, Jianming] Iowa State Univ, Dept Agron, Ames, IA 50011 USA.
[Drnevich, Jenny] Univ Illinois, High Performance Biol Comp Grp, Urbana, IL 61801 USA.
[Drnevich, Jenny] Univ Illinois, Carver Biotechnol Ctr, Urbana, IL 61801 USA.
[Bradbury, Peter J.] ARS, USDA, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA.
RP Lipka, AE (reprint author), Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
EM alipka@illinois.edu
RI Hudson, Matthew/A-4438-2008;
OI Hudson, Matthew/0000-0002-4737-0936; Yu, Jianming/0000-0001-5326-3099;
Gore, Michael/0000-0001-6896-8024
FU National Science Foundation [0922493, 1238142]; University of Illinois;
Cornell University
FX This research was supported by National Science Foundation awards
#0922493 and #1238142, University of Illinois starting funds (A.E.L.),
and Cornell University startup funds (M.A.G.). We acknowledge the
assistance of Patrick J. Brown in providing insight into NGS
technologies and Christine H. Diepenbrock for invaluable feedback on the
GS section.
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PU CURRENT BIOLOGY LTD
PI LONDON
PA 84 THEOBALDS RD, LONDON WC1X 8RR, ENGLAND
SN 1369-5266
EI 1879-0356
J9 CURR OPIN PLANT BIOL
JI Curr. Opin. Plant Biol.
PD APR
PY 2015
VL 24
BP 110
EP 118
DI 10.1016/j.pbi.2015.02.010
PG 9
WC Plant Sciences
SC Plant Sciences
GA CH1AS
UT WOS:000353754100017
PM 25795170
ER
PT J
AU Higgins, N
Hintermann, B
Brown, ME
AF Higgins, Nathaniel
Hintermann, Beat
Brown, Molly E.
TI A model of West African millet prices in rural markets
SO FOOD POLICY
LA English
DT Article
DE Millet; Cereal; West Africa; Price forecasting; Remote sensing; NDVI;
Regional panel data
ID ESTIMATING CROP YIELDS; NDVI TIME-SERIES; UNIT-ROOT TESTS; PANEL-DATA;
AVHRR; VEGETATION; INFORMATION; SAHEL
AB In this article we specify a model of millet prices in the three West African countries of Burkina Faso, Mali, and Niger. Using data obtained from USAID's Famine Early Warning Systems Network (FEWS NET) we present a unique regional millet price forecasting model that takes advantage of the panel nature of our data and accounts for the distance of rural markets from capital cities. Another novel aspect of our analysis is our use of the Normalized Difference Vegetation Index (NDVI) to detect and control for variation in conditions for productivity. We find that including NDVI information significantly improves price forecasts. Published by Elsevier Ltd.
C1 [Higgins, Nathaniel] ERS, USDA, Washington, DC 20024 USA.
[Hintermann, Beat] Univ Basel, Fac Business & Econ, CH-4003 Basel, Switzerland.
[Brown, Molly E.] NASA Goddard Space Flight Ctr, Biospher Sci Lab, Greenbelt, MD USA.
RP Higgins, N (reprint author), ERS, USDA, 355 E St SW, Washington, DC 20024 USA.
EM nhiggins@ers.usda.gov; b.hintermann@unibas.ch; molly.brown@nasa.gov
RI Brown, Molly/E-2724-2010
OI Brown, Molly/0000-0001-7384-3314
NR 56
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PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0306-9192
EI 1873-5657
J9 FOOD POLICY
JI Food Policy
PD APR
PY 2015
VL 52
BP 33
EP 43
DI 10.1016/j.foodpol.2014.09.011
PG 11
WC Agricultural Economics & Policy; Economics; Food Science & Technology;
Nutrition & Dietetics
SC Agriculture; Business & Economics; Food Science & Technology; Nutrition
& Dietetics
GA CH0UG
UT WOS:000353737300004
ER
PT J
AU Meyer, SLF
Zasada, IA
Rupprecht, SM
VanGessel, MJ
Hooks, CRR
Morra, MJ
Everts, KL
AF Meyer, Susan L. F.
Zasada, Inga A.
Rupprecht, Shannon M.
VanGessel, Mark J.
Hooks, Cerruti R. R.
Morra, Matthew J.
Everts, Kathryne L.
TI Mustard Seed Meal for Management of Root-knot Nematode and Weeds in
Tomato Production
SO HORTTECHNOLOGY
LA English
DT Article
DE amendment; biofuel by-products; Brassica; glucosinolate; Meloidogyne
incognita; phytotoxicity; plant disease; soilborne plant-pathogenic
fungi; Sinapis
ID THIOCYANATE SCN-PRODUCTION; APPLE REPLANT DISEASE;
MELOIDOGYNE-INCOGNITA; HYDROLYSIS PRODUCTS; SOIL AMENDMENTS;
SUPPRESSION; EFFICACY; PYTHIUM; PHYTOTOXICITY; BIOFUMIGATION
AB Mustard seed meals of indian mustard [InM (Brassica juncea)] and yellow mustard [YeM (Sinapis alba)], alone and combined, were tested for effects on tomato (Solanum lycopersicum) plants and for suppression of southern root-knot nematode [RKN (Meloidogyne incognita)] and weed populations. In the greenhouse, with all seed meal treatments applied at 0.25% total w/w soil, low tomato plant stands (up to 60% dying/dead) resulted from amendment with 3 YeM:1 InM, 1 YeM:1 InIM, and YeM, applied right before transplant. Compared with untreated controls, low numbers of RKN eggs per gram root were consistently recorded from amendment with 3 YeM:1 InIM. In a 2012 field study, incorporation of 1 YeM:1 InM (1700 lb/acre) resulted in lower tomato root biomass than fertilizer application (504 lb/acre), YeM or InM (each 1700 lb/acre). All treatments were applied with added fertilizer to achieve 100-102 lb/acre nitrogen, 7.4 lb/acre phosphorus, 74.7 lb/acre potassium, 6.0 lb/acre sulfur, and 1.0 lb/acre boron. The lowest numbers of RKN eggs per gram root (harvest 2012) were collected from plots amended with InM (1700 lb/acre), YeM (850 lb/acre), and 3 YeM:1 InM (1700 lb/acre), but the numbers were not significantly different from fertilizer only (504 lb/acre) controls. Highest and lowest tomato yields (numbers of fruit) in 2012 were recorded from YeM (850 lb/acre) and 3 YeM:1 InM (1700 lb/acre) amendments, respectively. In 2013, there were no significant differences among treatments in eggs per gram root or in tomato yields. No mustard seed meal treatment affected weed populations. At the tested rates, YeM seed meal showed potential for use in tomato beds but results were inconsistent between years.
C1 [Meyer, Susan L. F.; Rupprecht, Shannon M.] USDA ARS, Henry A Wallace Beltsville Agr Res Ctr, Nematol Lab, Beltsville, MD 20705 USA.
[Zasada, Inga A.] USDA ARS, Hort Crops Res Lab, Corvallis, OR 97330 USA.
[VanGessel, Mark J.] Univ Delaware, Coll Agr & Nat Resources, Res & Educ Ctr, Georgetown, DE 19947 USA.
[Hooks, Cerruti R. R.] Univ Maryland, Dept Entomol, College Pk, MD 20742 USA.
[Morra, Matthew J.] Univ Idaho, Div Soil & Land Resources, Moscow, ID 83844 USA.
[Everts, Kathryne L.] Univ Maryland, Lower Eastern Shore Res & Educ Ctr, Dept Plant Sci & Landscape Architecture, Salisbury, MD USA.
RP Meyer, SLF (reprint author), USDA ARS, Henry A Wallace Beltsville Agr Res Ctr, Nematol Lab, BARC West,Bldg 010A,Room 112,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM Susan.L.Meyer@ars.usda.gov
RI Morra, Matthew/B-1723-2008
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PU AMER SOC HORTICULTURAL SCIENCE
PI ALEXANDRIA
PA 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA
SN 1063-0198
EI 1943-7714
J9 HORTTECHNOLOGY
JI HortTechnology
PD APR
PY 2015
VL 25
IS 2
BP 192
EP 202
PG 11
WC Horticulture
SC Agriculture
GA CH2PP
UT WOS:000353867400006
ER
PT J
AU Nakai, M
Harrison, RL
Uchida, H
Ukuda, R
Hikihara, S
Ishii, K
Kunimi, Y
AF Nakai, Madoka
Harrison, Robert L.
Uchida, Haruaki
Ukuda, Rie
Hikihara, Shohei
Ishii, Kazuo
Kunimi, Yasuhisa
TI Isolation of an Adoxophyes orana granulovirus (AdorGV) occlusion body
morphology mutant: biological activity, genome sequence and relationship
to other isolates of AdorGV
SO JOURNAL OF GENERAL VIROLOGY
LA English
DT Article
ID NUCLEAR POLYHEDROSIS-VIRUS; SINGLE-NUCLEOCAPSID NUCLEOPOLYHEDROVIRUS;
SMALLER TEA TORTRIX; GRANULOSIS-VIRUS; MULTIPLE NUCLEOPOLYHEDROVIRUS;
LEPIDOPTERA-TORTRICIDAE; INCLUSION-BODIES; VIRION OCCLUSION; PROTEIN;
GENES
AB A granulovirus (GV) producing occlusion bodies (OBs) with an unusual appearance was isolated from Adoxophyes spp. larvae in the field. Ultrastructural observations revealed that its OBs were significantly larger and cuboidal in shape, rather than the standard ovo-cylindrical shape typical of GVs. N-terminal amino acid sequence analysis of the OB matrix protein from this virus suggested that this new isolate was a variant of Adoxophyes orana granulovirus (AdorGV). Bioassays of this GV (termed AdorGV-M) and an English isolate of AdorGV (termed AdorGV-E) indicated that the two isolates were equally pathogenic against larvae of Adoxophyes honmai. However, AdorGV-M retained more infectivity towards larvae after irradiation with UV light than did AdorGV-E. Sequencing and analysis of the AdorGV-M genome revealed little sequence divergence between this isolate and AdorGV-E. Comparison of selected genes among the two AdorGV isolates and other Japanese AdorGV isolates revealed differences that may account for the unusual OB morphology of AdorGV-M.
C1 [Nakai, Madoka; Uchida, Haruaki; Ukuda, Rie; Hikihara, Shohei; Ishii, Kazuo; Kunimi, Yasuhisa] Tokyo Univ Agr & Technol, Fuchu, Tokyo 1838509, Japan.
[Harrison, Robert L.] USDA ARS, Invas Insect Biocontrol & Behav Lab, Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
[Ukuda, Rie] Okinawa Prefectural Plant Protect Ctr, Yaeyama Branch Off, Okinawa 9070003, Japan.
RP Nakai, M (reprint author), Tokyo Univ Agr & Technol, Fuchu, Tokyo 1838509, Japan.
EM madoka@cc.tuat.ac.jp
RI NAKAI, Madoka/G-1088-2013; Ishii, Kazuo/M-3099-2016;
OI NAKAI, Madoka/0000-0003-1929-9543; Ishii, Kazuo/0000-0002-8363-8266;
Harrison, Robert/0000-0002-8348-3874
FU JSPS KAKENHI [18380038, 21580064]; US Department of Agriculture
FX The authors sincerely acknowledge the contribution of Miku Suzuki and
Kento Abe for electron microscopy and DNA isolation. This work was
supported by the JSPS KAKENHI grant nos 18380038 and 21580064 and the US
Department of Agriculture. Mention of trade names or commercial products
in this publication is solely for the purpose of providing specific
information and does not imply recommendation or endorsement by the US
Department of Agriculture.
NR 51
TC 0
Z9 0
U1 0
U2 8
PU SOC GENERAL MICROBIOLOGY
PI READING
PA MARLBOROUGH HOUSE, BASINGSTOKE RD, SPENCERS WOODS, READING RG7 1AG,
BERKS, ENGLAND
SN 0022-1317
EI 1465-2099
J9 J GEN VIROL
JI J. Gen. Virol.
PD APR
PY 2015
VL 96
BP 904
EP 914
DI 10.1099/jgv.0.000023
PN 4
PG 11
WC Biotechnology & Applied Microbiology; Virology
SC Biotechnology & Applied Microbiology; Virology
GA CG9CE
UT WOS:000353611200020
PM 25524166
ER
PT J
AU Wang, RL
Xia, QQ
Baerson, SR
Ren, Y
Wang, J
Su, YJ
Zheng, SC
Zeng, RS
AF Wang, Rui-Long
Xia, Qing-Qing
Baerson, Scott R.
Ren, Yong
Wang, Jie
Su, Yi-Juan
Zheng, Si-Chun
Zeng, Ren-Sen
TI A novel cytochrome P450 CYP6AB14 gene in Spodoptera litura (Lepidoptera:
Noctuidae) and its potential role in plant allelochemical detoxification
SO JOURNAL OF INSECT PHYSIOLOGY
LA English
DT Article
DE Spodoptera litura; Cytochrome P450; Plant allelochemical; RNA
interference; CYP6AB14
ID DOUBLE-STRANDED-RNA; INSECTICIDE RESISTANCE; DEPRESSARIA-PASTINACELLA;
HELICOVERPA-ARMIGERA; BOMBYX-MORI; HOUSE-FLY; METABOLISM; MECHANISMS;
COTTON; P450S
AB Cytochrome P450 monooxygenases (P450s) play a prominent role in the adaptation of insects to host plant chemical defenses. To investigate the potential role of P450s in adaptation of the lepidopteran pest Spodoptera litura to host plant allelochemicals, an expressed sequence data set derived from 6th instar midgut tissues was first mined. One sequence identified from the S. litura 6th instar midgut EST database was determined by phylogenetic analysis to belong to the CYP6AB P450 subfamily, and named CYP6AB14. Dietary supplementation of S. litura larvae with either xanthotoxin (XAN), coumarin (COU) and flavone (FLA) led to elevated CYP6AB14 transcript levels in both midgut and fat body tissues. Injection of CYP6AB14-derived double-stranded RNA (dsRNA) into S. litura individuals significantly reduced CYP6AB14 transcript levels, and resulted in increased developmental abnormalities and higher mortality rates among XAN, COU and FLA-fed larvae. Our results strongly suggest a key role for CYP6AB14 in plant allelochemical detoxification in S. litura. (C) 2015 Elsevier Ltd. All rights reserved.
C1 [Wang, Rui-Long; Xia, Qing-Qing; Ren, Yong; Wang, Jie; Su, Yi-Juan; Zeng, Ren-Sen] South China Agr Univ, Minist Agr China, Key Lab Trop Agroenvironm, Guangzhou 510642, Guangdong, Peoples R China.
[Zeng, Ren-Sen] Fujian Agr & Forestry Univ, Coll Life Sci, Fuzhou 350002, Peoples R China.
[Baerson, Scott R.] USDA ARS, Nat Prod Utilizat Res Unit, University, MS 38677 USA.
[Zheng, Si-Chun] S China Normal Univ, Sch Life Sci, Guangzhou 510631, Guangdong, Peoples R China.
RP Zeng, RS (reprint author), South China Agr Univ, Minist Agr China, Key Lab Trop Agroenvironm, Guangzhou 510642, Guangdong, Peoples R China.
EM rszeng@scau.edu.cn
FU National Natural Science Foundation of China [31070388, 31100286,
31470576]; National 973 Program of China [2011CB100400]; Guangdong
Province Universities and Colleges Pearl River Scholar Funded Scheme;
Guangdong Natural Science Foundation of China [S2011040004336]
FX We thank three anonymous reviewers for their valuable comments and
suggestions. We thank Prof. Wenqing Zhang for kindly providing us a
plasmid vector containing GFP. This research was financially supported
by the National Natural Science Foundation of China (31070388, 31100286
and 31470576), the National 973 Program of China (2011CB100400), the
Guangdong Province Universities and Colleges Pearl River Scholar Funded
Scheme (2010), and the Guangdong Natural Science Foundation of China
(S2011040004336). The authors are grateful to Dr. David Nelson for his
assistance with cytochrome P450 nomenclature.
NR 65
TC 2
Z9 3
U1 1
U2 27
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0022-1910
EI 1879-1611
J9 J INSECT PHYSIOL
JI J. Insect Physiol.
PD APR
PY 2015
VL 75
BP 54
EP 62
DI 10.1016/j.jinsphys.2015.02.013
PG 9
WC Entomology; Physiology; Zoology
SC Entomology; Physiology; Zoology
GA CH0UY
UT WOS:000353739100008
PM 25783953
ER
PT J
AU Zheng, HY
Li, AY
Teel, PD
de Leon, AAP
Seshu, J
Liu, JZ
AF Zheng, Hongyuan
Li, Andrew Y.
Teel, Pete D.
de Leon, Adalberto A. Perez
Seshu, Janakiram
Liu, Jingze
TI Biological and physiological characterization of in vitro blood feeding
in nymph and adult stages of Ornithodoros turicata (Acari: Argasidae)
SO JOURNAL OF INSECT PHYSIOLOGY
LA English
DT Article
DE Relapsing fever tick; Ornithodoros turicata; Blood feeding; Pharyngeal
pump; Gas exchange; Water loss
ID AFRICAN-SWINE-FEVER; DISCONTINUOUS GAS-EXCHANGE; BORNE RELAPSING FEVER;
BORRELIA-HERMSII; LIFE-CYCLE; TICK; VIRUS; IXODIDAE; HOST; TRANSMISSION
AB Biological and physiological aspects of blood feeding in nymph and adult Ornithodoros turicata were investigated using an in vitro technique combined with electrophysiological recordings and respirometry. The duration of blood feeding through a Parafllm (R) membrane was similar (19.2-22.6 min) in both developmental stages. The mean (+/- SD) size of blood meal ingested by nymphs, females, and males was 44.2 +/- 17.9, 150.6 +/- 48.7, and 74.2 +/- 36.9 mg, respectively, representing a 2.5-, 2.8- and 3.0-fold increase from their respective unfed weights. Electrophysiological recordings of the pharyngeal pump during blood feeding revealed that ticks ingested blood at a rate of 6.1-6.4 suctions per second. Mean blood volume ingested per suction was 0.013 mu l in females and 0.007 mu l in both males and nymphs. Blood meal size (mg) correlated with unfed body weight (mg) (r(2) = 0.50, p < 0.05) and with blood volume ingested per suction (r(2) = 0.71, p < 0.05). Unfed ticks exhibited a circadian ventilation rhythm with discontinuous gas exchange pattern during the daytime and continuous pattern during nighttime. Mean standard metabolic rates (SMR, (V) over dot(co2)) in unfed nymphs, females and males of 1.4, 3.0 and 0.9 mu l h(-1) increased to 2.0, 5.7 and 2.4 mu l h(-1), respectively, after a blood meal. SMR correlated positively with blood meal size (r(2) = 0.89, p < 0.05). Mean coxal fluid weight excreted after a blood meal in nymphs, females, and males was 8.7, 20.0, and 7.7 mg, respectively, which represents 27.0%, 23.4% and 26.7% of their blood meal size. This study revealed biological and physiological characteristics of soft tick blood feeding and metabolism important to tick survival. Published by Elsevier Ltd.
C1 [Zheng, Hongyuan; Li, Andrew Y.; de Leon, Adalberto A. Perez] USDA ARS, Knipling Bushland US Livestock Insects Res Lab, Kerrville, TX 78028 USA.
[Zheng, Hongyuan; Liu, Jingze] Hebei Normal Univ, Coll Life Sci, Key Lab Anim Physiol Biochem & Mol Biol Hebei Pro, Shijiazhuang 050016, Peoples R China.
[Teel, Pete D.] Texas A&M Univ, Texas A&M AgriLife Res, Dept Entomol, College Stn, TX 77843 USA.
[Seshu, Janakiram] Univ Texas San Antonio, South Texas Ctr Emerging Infect Dis, San Antonio, TX 78249 USA.
[Seshu, Janakiram] Univ Texas San Antonio, Dept Biol, San Antonio, TX 78249 USA.
RP Li, AY (reprint author), ARS, USDA, Invas Insect Biocontrol & Behav Lab, Beltsville Agr Res Ctr, 10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM Andrew.Li@ars.usda.gov
FU China Scholarship Council; United States Department of Agriculture
(USDA), Agricultural Research Service (ARS) [6205-32000-034-00D]
FX The authors thank Darci Burchers for helping maintain the tick colony
and two anonymous reviewers for critical review of the manuscript. H.-Y.
Zheng was supported by a scholarship from China Scholarship Council.
A.Y. Li and A.A. Perez de Leon were funded by United States Department
of Agriculture (USDA), Agricultural Research Service (ARS) appropriated
project 6205-32000-034-00D.
NR 37
TC 4
Z9 4
U1 2
U2 7
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0022-1910
EI 1879-1611
J9 J INSECT PHYSIOL
JI J. Insect Physiol.
PD APR
PY 2015
VL 75
BP 73
EP 79
DI 10.1016/j.jinsphys.2015.03.005
PG 7
WC Entomology; Physiology; Zoology
SC Entomology; Physiology; Zoology
GA CH0UY
UT WOS:000353739100010
PM 25783956
ER
PT J
AU Lu, F
Romay, MC
Glaubitz, JC
Bradbury, PJ
Elshire, RJ
Wang, TY
Li, Y
Li, YX
Semagn, K
Zhang, XC
Hernandez, AG
Mikel, MA
Soifer, I
Barad, O
Buckler, ES
AF Lu, Fei
Romay, Maria C.
Glaubitz, Jeffrey C.
Bradbury, Peter J.
Elshire, Robert J.
Wang, Tianyu
Li, Yu
Li, Yongxiang
Semagn, Kassa
Zhang, Xuecai
Hernandez, Alvaro G.
Mikel, Mark A.
Soifer, Ilya
Barad, Omer
Buckler, Edward S.
TI High-resolution genetic mapping of maize pan-genome sequence anchors
SO NATURE COMMUNICATIONS
LA English
DT Article
ID COPY NUMBER VARIATION; TRANSPOSABLE ELEMENTS; WIDE ASSOCIATION;
WHOLE-GENOME; EVOLUTION; POPULATION; DIVERSITY; PLANTS; DUPLICATION;
ALIGNMENT
AB In addition to single-nucleotide polymorphisms, structural variation is abundant in many plant genomes. The structural variation across a species can be represented by a 'pan-genome', which is essential to fully understand the genetic control of phenotypes. However, the pan-genome's complexity hinders its accurate assembly via sequence alignment. Here we demonstrate an approach to facilitate pan-genome construction in maize. By performing 18 trillion association tests we map 26 million tags generated by reduced representation sequencing of 14,129 maize inbred lines. Using machine-learning models we select 4.4 million accurately mapped tags as sequence anchors, 1.1 million of which are presence/absence variations. Structural variations exhibit enriched association with phenotypic traits, indicating that it is a significant source of adaptive variation in maize. The ability to efficiently map ultrahigh-density pan-genome sequence anchors enables fine characterization of structural variation and will advance both genetic research and breeding in many crops.
C1 [Lu, Fei; Romay, Maria C.; Glaubitz, Jeffrey C.; Elshire, Robert J.; Buckler, Edward S.] Cornell Univ, Inst Genom Div, Ithaca, NY 14850 USA.
[Bradbury, Peter J.; Buckler, Edward S.] USDA ARS, Ithaca, NY 14850 USA.
[Wang, Tianyu; Li, Yu; Li, Yongxiang] Chinese Acad Agr Sci, Inst Crop Sci, Beijing 100081, Peoples R China.
[Semagn, Kassa] Int Maize & Wheat Improvement Ctr CIMMYT, Nairobi 00621, Kenya.
[Zhang, Xuecai] Int Maize & Wheat Improvement Ctr CIMMYT, Mexico City 06600, DF, Mexico.
[Hernandez, Alvaro G.; Mikel, Mark A.] Univ Illinois, Roy J Carver Biotechnol Ctr, Urbana, IL 61801 USA.
[Mikel, Mark A.] Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
[Soifer, Ilya; Barad, Omer] NRGENE, IL-7403648 Ness Ziona, Israel.
RP Lu, F (reprint author), Cornell Univ, Inst Genom Div, Ithaca, NY 14850 USA.
EM fl262@cornell.edu; esb33@cornell.edu
OI Semagn, Kassa/0000-0001-6486-5685; Buckler, Edward/0000-0002-3100-371X;
Elshire, Robert/0000-0003-1753-6920
FU National Science Foundation [DBI-0820619, DBI-0965342]; USDA-ARS; Bill
and Melinda Gates Foundation; Ministry of Science and Technology of
China [2011CB100105, 2011DFA30450]
FX This work was supported by the National Science Foundation (DBI-0820619,
DBI-0965342), the USDA-ARS, the Bill and Melinda Gates Foundation and
the Ministry of Science and Technology of China (2011CB100105 and
2011DFA30450). We thank J. Ross-Ibarra, Z. Zhang, J.G. Wallace, Q. Sun
and S. Miller for helpful discussions.
NR 42
TC 16
Z9 16
U1 9
U2 37
PU NATURE PUBLISHING GROUP
PI LONDON
PA MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
SN 2041-1723
J9 NAT COMMUN
JI Nat. Commun.
PD APR
PY 2015
VL 6
AR 6914
DI 10.1038/ncomms7914
PG 8
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CH0IW
UT WOS:000353704100022
PM 25881062
ER
PT J
AU Bhattacharyya, R
Ghosh, BN
Mishra, PK
Mandal, B
Rao, CS
Sarkar, D
Das, K
Anil, KS
Lalitha, M
Hati, KM
Franzluebbers, AJ
AF Bhattacharyya, Ranjan
Ghosh, Birendra Nath
Mishra, Prasanta Kumar
Mandal, Biswapati
Rao, Cherukumalli Srinivasa
Sarkar, Dibyendu
Das, Krishnendu
Anil, Kokkuvayil Sankaranarayanan
Lalitha, Manickam
Hati, Kuntal Mouli
Franzluebbers, Alan Joseph
TI Soil Degradation in India: Challenges and Potential Solutions
SO SUSTAINABILITY
LA English
DT Review
ID SOYBEAN-WHEAT ROTATION; CONSERVATION AGRICULTURE; GANGETIC PLAINS; SODIC
SOIL; CARBON SEQUESTRATION; CROPPING SYSTEMS; IRRIGATED AGROECOSYSTEM;
SEQUESTERING CARBON; PHYSICAL-PROPERTIES; WATER PRODUCTIVITY
AB Soil degradation in India is estimated to be occurring on 147 million hectares (Mha) of land, including 94 Mha from water erosion, 16 Mha from acidification, 14 Mha from flooding, 9 Mha from wind erosion, 6 Mha from salinity, and 7 Mha from a combination of factors. This is extremely serious because India supports 18% of the world's human population and 15% of the world's livestock population, but has only 2.4% of the world's land area. Despite its low proportional land area, India ranks second worldwide in farm output. Agriculture, forestry, and fisheries account for 17% of the gross domestic product and employs about 50% of the total workforce of the country. Causes of soil degradation are both natural and human-induced. Natural causes include earthquakes, tsunamis, droughts, avalanches, landslides, volcanic eruptions, floods, tornadoes, and wildfires. Human-induced soil degradation results from land clearing and deforestation, inappropriate agricultural practices, improper management of industrial effluents and wastes, over-grazing, careless management of forests, surface mining, urban sprawl, and commercial/industrial development. Inappropriate agricultural practices include excessive tillage and use of heavy machinery, excessive and unbalanced use of inorganic fertilizers, poor irrigation and water management techniques, pesticide overuse, inadequate crop residue and/or organic carbon inputs, and poor crop cycle planning. Some underlying social causes of soil degradation in India are land shortage, decline in per capita land availability, economic pressure on land, land tenancy, poverty, and population increase. In this review of land degradation in India, we summarize (1) the main causes of soil degradation in different agro-climatic regions; (2) research results documenting both soil degradation and soil health improvement in various agricultural systems; and (3) potential solutions to improve soil health in different regions using a variety of conservation agricultural approaches.
C1 [Bhattacharyya, Ranjan] Indian Agr Res Inst, Ctr Environm Sci & Climate Resilient Agr, New Delhi 110012, India.
[Ghosh, Birendra Nath; Mishra, Prasanta Kumar] Cent Soil & Water Conservat Res & Training Inst, Dehra Dun 248195, India.
[Mandal, Biswapati] Bidhan Chandra Krishi Viswa Vidayala, Kalyani 741235, W Bengal, India.
[Rao, Cherukumalli Srinivasa] Cent Res Inst Dryland Agr, Hyderabad 500059, Telangana, India.
[Sarkar, Dibyendu] ICAR Res Complex North Eastern Hill Reg, Imphal 795004, Manipur, India.
[Das, Krishnendu] Kolkata Reg Ctr, Natl Bur Soil Survey & Land Use Planning, Kolkata 700091, India.
[Anil, Kokkuvayil Sankaranarayanan; Lalitha, Manickam] Bangalore Reg Ctr, Natl Bur Soil Survey & Land Use Planning, Bangalore 560024, Karnataka, India.
[Hati, Kuntal Mouli] Indian Inst Soil Sci, Div Soil Phys, Bhopal 462038, India.
[Franzluebbers, Alan Joseph] ARS, USDA, Plant Sci Res Unit, Raleigh, NC 27695 USA.
RP Bhattacharyya, R (reprint author), Indian Agr Res Inst, Ctr Environm Sci & Climate Resilient Agr, NRL Bldg, New Delhi 110012, India.
EM ranjan_vpkas@yahoo.com; bnghosh62@rediffmail.com; pkmbellary@gmail.com;
mandalbiswapati@gmail.com; cherukumalli2011@gmail.com;
dsarkar04@rediffmail.com; das_krishnendu@hotmail.com;
anilsoils@yahoo.co.in; mslalit@yahoo.co.in; kuntalmouli@gmail.com;
alan.franzluebbers@ars.usda.gov
NR 124
TC 7
Z9 7
U1 17
U2 69
PU MDPI AG
PI BASEL
PA ST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND
SN 2071-1050
J9 SUSTAINABILITY-BASEL
JI Sustainability
PD APR
PY 2015
VL 7
IS 4
BP 3528
EP 3570
DI 10.3390/su7043528
PG 43
WC GREEN & SUSTAINABLE SCIENCE & TECHNOLOGY; Environmental Sciences;
Environmental Studies
SC Science & Technology - Other Topics; Environmental Sciences & Ecology
GA CH0MV
UT WOS:000353715400002
ER
PT J
AU Childers, DL
Cadenasso, ML
Grove, JM
Marshall, V
McGrath, B
Pickett, STA
AF Childers, Daniel L.
Cadenasso, Mary L.
Grove, J. Morgan
Marshall, Victoria
McGrath, Brian
Pickett, Steward T. A.
TI An Ecology for Cities: A Transformational Nexus of Design and Ecology to
Advance Climate Change Resilience and Urban Sustainability
SO SUSTAINABILITY
LA English
DT Article
ID ORGANIZATIONAL-STRUCTURE; ECOSYSTEM SERVICES; DECISION-MAKING;
STEWARDSHIP; GOVERNANCE; MANAGEMENT; PROGRAM; SCIENCE; SYSTEMS; POLICY
AB Cities around the world are facing an ever-increasing variety of challenges that seem to make more sustainable urban futures elusive. Many of these challenges are being driven by, and exacerbated by, increases in urban populations and climate change. Novel solutions are needed today if our cities are to have any hope of more sustainable and resilient futures. Because most of the environmental impacts of any project are manifest at the point of design, we posit that this is where a real difference in urban development can be made. To this end, we present a transformative model that merges urban design and ecology into an inclusive, creative, knowledge-to-action process. This design-ecology nexus-an ecology for cities-will redefine both the process and its products. In this paper we: (1) summarize the relationships among design, infrastructure, and urban development, emphasizing the importance of joining the three to achieve urban climate resilience and enhance sustainability; (2) discuss how urban ecology can move from an ecology of cities to an ecology for cities based on a knowledge-to-action agenda; (3) detail our model for a transformational urban design-ecology nexus, and; (4) demonstrate the efficacy of our model with several case studies.
C1 [Childers, Daniel L.] Arizona State Univ, Sch Sustainabil, Tempe, AZ 85287 USA.
[Cadenasso, Mary L.] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[Grove, J. Morgan] US Forest Serv, Baltimore, MD 21201 USA.
[Marshall, Victoria; McGrath, Brian] Parsons New Sch Design, New York, NY 10011 USA.
[Pickett, Steward T. A.] Cary Inst Ecosyst Studies, Millbrook, NY 12545 USA.
RP Childers, DL (reprint author), Arizona State Univ, Sch Sustainabil, Tempe, AZ 85287 USA.
EM dan.childers@asu.edu; mlcadenasso@ucdavis.edu; jmgrove@gmail.com;
marshalv@newschool.edu; mcgrath@newschool.edu;
picketts@caryinstitute.org
FU U.S. National Science Foundation (NSF) [1140070]; NSF [1026865, 1027188,
0844778]
FX The authors of this paper are members of the Urban Sustainability
Research Coordination Network that is supported by the U.S. National
Science Foundation (NSF) through Grant No. 1140070. Additional support
has been provided by the NSF to DLC through the CAP LTER Program (Grant
No. 1026865), to MLC, JMG, BM, and STAP through the BES LTER Program
(Grant No. 1027188), and to MLC through Grant No. 0844778.
NR 96
TC 15
Z9 15
U1 11
U2 66
PU MDPI AG
PI BASEL
PA ST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND
SN 2071-1050
J9 SUSTAINABILITY-BASEL
JI Sustainability
PD APR
PY 2015
VL 7
IS 4
BP 3774
EP 3791
DI 10.3390/su7043774
PG 18
WC GREEN & SUSTAINABLE SCIENCE & TECHNOLOGY; Environmental Sciences;
Environmental Studies
SC Science & Technology - Other Topics; Environmental Sciences & Ecology
GA CH0MV
UT WOS:000353715400014
ER
PT J
AU Hoberg, EP
Agosta, SJ
Boeger, WA
Brooks, DR
AF Hoberg, Eric P.
Agosta, Salvatore J.
Boeger, Walter A.
Brooks, Daniel R.
TI An integrated parasitology: revealing the elephant through tradition and
invention
SO TRENDS IN PARASITOLOGY
LA English
DT Review
DE biodiversity exploration; taxonomy; systematics; cryptic species;
archives; climate change; emerging diseases; 'parasite paradox';
ecological fitting; 'Stockholm Paradigm'
ID AROSTRILEPIS EUCESTODA HYMENOLEPIDIDAE; EMERGING INFECTIOUS-DISEASES;
MOLECULAR SYSTEMATICS; CLIMATE-CHANGE; PHYLOGENETIC ANALYSIS; SPECIES
DELIMITATION; CHANGING WORLD; NORTH-AMERICA; N. SP; BIODIVERSITY
AB The field of parasitology contributes to the elucidation of patterns and processes in evolution, ecology, and biogeography that are of fundamental importance across the biosphere, leading to a thorough understanding of biodiversity and varied responses to global change. Foundations from taxonomic and systematic information drive biodiversity discovery and foster considerable infrastructure and integration of research programs. Morphological, physiological, behavioral, life-history, and molecular data can be synthesized to discover and describe global parasite diversity, in a timely manner. In fully incorporating parasitology in policies for adaptation to global change, parasites and their hosts should be archived and studied within a newly emergent conceptual universe (the 'Stockholm Paradigm'), embracing the inherent complexity of host-parasite systems and improved explanatory power to understand biodiversity past, present, and future.
C1 [Hoberg, Eric P.] ARS, USDA, US Natl Parasite Collect, Beltsville, MD 20705 USA.
[Agosta, Salvatore J.] Virginia Commonwealth Univ, Ctr Environm Studies, Richmond, VA 23284 USA.
[Agosta, Salvatore J.] Virginia Commonwealth Univ, Dept Biol, Richmond, VA 23284 USA.
[Boeger, Walter A.; Brooks, Daniel R.] Univ Fed Parana, Lab Ecol Mol & Parasitol Evolutiva, BR-81531980 Curitiba, PR, Brazil.
RP Hoberg, EP (reprint author), ARS, USDA, US Natl Parasite Collect, BARC East 1180, Beltsville, MD 20705 USA.
EM eric.hoberg@ars.usda.gov
NR 80
TC 9
Z9 10
U1 5
U2 24
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 1471-4922
EI 1471-5007
J9 TRENDS PARASITOL
JI Trends Parasitol.
PD APR
PY 2015
VL 31
IS 4
BP 128
EP 133
DI 10.1016/j.pt.2014.11.005
PG 6
WC Parasitology
SC Parasitology
GA CH0YJ
UT WOS:000353748000004
PM 25488772
ER
PT J
AU Bergman, RD
Reed, DL
Taylor, AM
Harper, DP
Hodges, DG
AF Bergman, R. D.
Reed, D. L.
Taylor, A. M.
Harper, D. P.
Hodges, D. G.
TI CRADLE-TO-GATE LIFE CYCLE ASSESSMENT OF SWITCHGRASS FUEL PELLETS
MANUFACTURED IN THE SOUTHEASTERN UNITED STATES
SO WOOD AND FIBER SCIENCE
LA English
DT Article
DE Switchgrass; LCA; biomass; pellets; environmental impacts; life cycle
inventory; Tennessee
ID ALAMO SWITCHGRASS; BIOMASS; BIOFUELS; EMISSIONS; ENERGY; CROPS;
INVENTORY; BIOENERGY; ECONOMICS; RESIDUES
AB Developing renewable energy sources with low environmental impacts is becoming increasingly important as concerns about consuming fossil fuel sources grow. Cultivating, harvesting, drying, and densifying raw biomass feedstocks into pellets for easy handling and transport is one step forward in this endeavor. However, the corresponding environmental performances must be quantified. This study presents cradle-to-gate life cycle inventory and impact assessment data for switchgrass fuel pellets potentially manufactured in the US Southeast. Because there are no current manufacturers of switchgrass pellets, inventory data were based on field trials of cultivation and harvest of switchgrass combined with a separate study of wood pelletization. Energy inputs for cultivation and harvest of switchgrass were collected by survey from farmers in Tennessee and represent the years 2008, 2009, and 2010. Data for pelletization were taken from a report on wood pellet manufacturing in the US Southeast. To produce 1.0 Mg of pellets that contain 18.0 GJ of potential bioenergy, 4.1 GJ of fossil energy inputs were required. Switchgrass crops require relatively little energy and inputs for the cultivation and harvest processes. The majority of the environmental burdens are associated with drying and pelletizing the raw material.
C1 [Bergman, R. D.] US Forest Serv, Econ Stat & Life Cycle Anal Unit, Forest Prod Lab, USDA, Madison, WI 53726 USA.
[Reed, D. L.] Tennessee Dept Environm & Conservat, Jackson, TN 38305 USA.
[Taylor, A. M.; Harper, D. P.; Hodges, D. G.] Univ Tennessee, Dept Forestry Wildlife & Fisheries, Knoxville, TN 37920 USA.
RP Bergman, RD (reprint author), US Forest Serv, Econ Stat & Life Cycle Anal Unit, Forest Prod Lab, USDA, Madison, WI 53726 USA.
EM rbergman@fs.fed.us; Daniel.L.Reed@tn.gov; mtaylo29@utk.edu;
dharper4@utk.edu; dhodges2@utk.edu
FU University of Tennessee's Institute of Agriculture-Sun Grant Center
FX Special thanks are granted to the University of Tennessee's Institute of
Agriculture-Sun Grant Center for funding this project as well as The
Beck Group for providing consultant support. Participation from pellet
manufacturers was essential to meeting the goals of this study. We
express our gratitude to participating manufacturers for making this
inventory and analysis possible. Also, this study was made significantly
easier with the help of Chad Helwinkel in the Department of Agricultural
Economics at the University of Tennessee. Special thanks to the
UT-contracted switchgrass farmers for their cooperation in providing the
vital data that made this study possible.
NR 54
TC 0
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U1 3
U2 14
PU SOC WOOD SCI TECHNOL
PI MADISON
PA ONE GIFFORD PINCHOT DR, MADISON, WI 53705 USA
SN 0735-6161
J9 WOOD FIBER SCI
JI Wood Fiber Sci.
PD APR
PY 2015
VL 47
IS 2
BP 147
EP 159
PG 13
WC Forestry; Materials Science, Paper & Wood; Materials Science, Textiles
SC Forestry; Materials Science
GA CG9VO
UT WOS:000353668400003
ER
PT J
AU Rupasingha, A
Liu, YZ
Partridge, M
AF Rupasingha, Anil
Liu, Yongzheng
Partridge, Mark
TI Rural Bound: Determinants of Metro to Non-Metro Migration in the United
States
SO AMERICAN JOURNAL OF AGRICULTURAL ECONOMICS
LA English
DT Article
DE Metro to nonmetro migration; urban to rural migration; domestic
migration; county-to-county migration; USA counties; natural amenities;
industry-mix employment growth; retiree migration; Poisson regression
ID INDUSTRIAL-LOCATION; ECONOMIC-DEVELOPMENT; LINKED MIGRATION;
LABOR-MARKETS; AMENITIES; GROWTH; US; GENTRIFICATION; EQUILIBRIUM;
QUALITY
AB A general global precept is that agglomeration forces lead to migration from rural to urban areas. Yet for much of the time since the early 1970s, more people have moved from metro to nonmetro U.S. counties. The underlying causes of this pattern have changed over time with economic shocks and changing household preferences. For instance, the post 2000 period has seen a significant decline in domestic migration rates, a significant increase in commodity prices that favor rural areas, and potential changes in the valuation of natural amenities that would affect migration. This article investigates the determinants of U.S. gross migration from metro to nonmetro counties and nonmetro to metro counties for the 1995-2000 and 2005-2009 periods in order to compare the differences in rural to urban and urban to rural migration, as well as compare the 1990s to the 2005-2009 periods. More specifically, the present study extends the literature by more broadly examining the underlying factors associated with deconcentration and economic restructuring arguments of metro to nonmetro migration. The article uses (1) extensive county-to-county migration flows and (2) the utility maximization theory that extends the framework of a discrete choice model. The results show that population density, distance to urban areas, industry mix employment growth, natural amenities, and percentage of older people are key factors underlying these migration patterns. We also find a slight fading of effects of natural amenities and population density, and a slight increase in the effects of wage and employment growth from 2005-2009.
C1 [Rupasingha, Anil] USDA, Econ Res Serv, Washington, DC 20024 USA.
[Liu, Yongzheng] Renmin Univ China, Sch Finance, Beijing, Peoples R China.
[Partridge, Mark] Ohio State Univ, Dept Agr Environm & Dev Econ, Columbus, OH 43210 USA.
RP Rupasingha, A (reprint author), USDA, Econ Res Serv, Washington, DC 20024 USA.
EM anilrup@gmail.com
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PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0002-9092
EI 1467-8276
J9 AM J AGR ECON
JI Am. J. Agr. Econ.
PD APR
PY 2015
VL 97
IS 3
BP 680
EP 700
DI 10.1093/ajae/aau113
PG 21
WC Agricultural Economics & Policy; Economics
SC Agriculture; Business & Economics
GA CG7RF
UT WOS:000353501500002
ER
PT J
AU Prager, DL
Foltz, JD
Barham, BL
AF Prager, Daniel L.
Foltz, Jeremy D.
Barham, Bradford L.
TI Making Time for Agricultural and Life Science Research: Technical Change
and Productivity Gains
SO AMERICAN JOURNAL OF AGRICULTURAL ECONOMICS
LA English
DT Article
DE Faculty research productivity; production function estimations;
technological change; faculty time allocation
ID GROWTH RESURGENCE; US; INNOVATION; UNIVERSITY; INFORMATION; TECHNOLOGY
AB This work analyzes the research productivity of agricultural and life science faculty in U.S. Land Grant research universities from 1975 to 2005. Production function estimations that control for inputs and demographic characteristics reveal significant improvements after 1980 in faculty research productivity per unit time, especially in the non-top ten universities. Because, however, time available to faculty for research has decreased substantially in the past three decades, overall journal article output per faculty did not increase after the 1980s. Our findings demonstrate large productivity increases but raise concerns about the optimal allocation of faculty time.
C1 [Prager, Daniel L.] USDA, Econ Res Serv, Washington, DC 20250 USA.
[Foltz, Jeremy D.; Barham, Bradford L.] Univ Wisconsin, Dept Agr & Appl Econ, Madison, WI 53706 USA.
RP Prager, DL (reprint author), USDA, Econ Res Serv, Washington, DC 20250 USA.
FU National Science Foundation NSF [0424772]; USDA; University of
Wisconsin-Madison
FX Funding for this work comes from the National Science Foundation NSF
(Award 0424772, "The Rate and Direction of Agricultural Research at US
Land Grant Universities"), the USDA, and the University of
Wisconsin-Madison. The authors would like to thank two anonymous
reviewers, Jessica Goldberger, Frederick Buttel, Larry Busch, and
William Lacy. The views expressed here are those of the authors and do
not necessarily represent those of ERS or USDA.
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PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0002-9092
EI 1467-8276
J9 AM J AGR ECON
JI Am. J. Agr. Econ.
PD APR
PY 2015
VL 97
IS 3
BP 743
EP 761
DI 10.1093/ajae/aau089
PG 19
WC Agricultural Economics & Policy; Economics
SC Agriculture; Business & Economics
GA CG7RF
UT WOS:000353501500005
ER
PT J
AU Livingston, M
Roberts, MJ
Zhang, Y
AF Livingston, Michael
Roberts, Michael J.
Zhang, Yue
TI Optimal Sequential Plantings of Corn and Soybeans Under Price
Uncertainty
SO AMERICAN JOURNAL OF AGRICULTURAL ECONOMICS
LA English
DT Article
DE Crop rotations; dynamic programming; option value; supply response;
uncertainty
ID MORAL HAZARD; FARM SIZE; MODEL; RISK; AGRICULTURE; TECHNOLOGY;
IRRIGATION; MANAGEMENT; DECISIONS; INSURANCE
AB Optimal crop choice and fertilizer applications depend on the stochastic dynamics of commodity prices, fertilizer prices, and the agronomic effects of rotation versus monoculture. The efficient decision rule accounts for real option values associated with maintaining land disposition in an environment with highly uncertain future prices and irreversible past planting decisions. We parameterize a baseline model for a representative acre in Iowa and compare the model's predictions and profits to relatively naive, shorter horizon decision rules, and a field managed with optimal fertilizer applications conditional on corn and soybeans always being rotated. We also examine the effects of a permanently larger premium on corn prices relative to soybean prices, which has been observed in locations near recently established ethanol plants. We then compare the various decision rules to actual crop choices in a panel of over 6,500 Iowa plots during 1979-2007. As compared to less forward-looking objectives, we find the agronomic benefits of rotations coupled with real option values can lead to a more inelastic response of planting decisions to both transitory and permanent price changes. Always rotating, regardless of prices, is close to optimal, but so are shorter-horizon objectives. One implication is that reduced corn monoculture and fertilizer application rates might be implemented with modest incentive payments of $4 per acre or less.
C1 [Livingston, Michael] Promontory Financial Grp LLC, Washington, DC 20006 USA.
[Livingston, Michael] USDA, Econ Res Serv, Washington, DC USA.
[Roberts, Michael J.] Univ Hawaii Manoa, Honolulu, HI 96822 USA.
[Zhang, Yue] N Carolina State Univ, Dept Agr & Resource Econ, Raleigh, NC 27695 USA.
RP Livingston, M (reprint author), Promontory Financial Grp LLC, 801 17th St NW,Suite 1100, Washington, DC 20006 USA.
EM mlivingston@promontory.com; michael.roberts@hawaii.edu;
yzhang19@ncsu.edu
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PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0002-9092
EI 1467-8276
J9 AM J AGR ECON
JI Am. J. Agr. Econ.
PD APR
PY 2015
VL 97
IS 3
BP 855
EP 878
DI 10.1093/ajae/aau055
PG 24
WC Agricultural Economics & Policy; Economics
SC Agriculture; Business & Economics
GA CG7RF
UT WOS:000353501500010
ER
PT J
AU Goodwin, BK
Hungerford, A
AF Goodwin, Barry K.
Hungerford, Ashley
TI Copula-Based Models of Systemic Risk in US Agriculture: Implications for
Crop Insurance and Reinsurance Contracts
SO AMERICAN JOURNAL OF AGRICULTURAL ECONOMICS
LA English
DT Article
DE Copula models; crop insurance; systemic risk
ID CONSTRUCTIONS; DEPENDENCE; VARIABLES; SELECTION
AB The federal crop insurance program has been a major fixture of U.S. agricultural policy since the 1930s, and continues to grow in size and importance. Indeed, it now represents the most prominent farm policy instrument, accounting for more government spending than any other farm commodity program. The 2014 Farm Bill further expanded the crop insurance program and introduced a number of new county-level revenue insurance plans. In 2013, over $123 billion in crop value was insured under the program. Crop revenue insurance, first introduced in the 1990s, now accounts for nearly 70% of the total liability in the program. The available plans cover losses that result from a revenue shortfall that can be triggered by multiple, dependent sources of risk-either low prices, low yields, or a combination of both. The actuarial practices currently applied when rating these plans essentially involve the application of a Gaussian copula model to the pricing of dependent risks. We evaluate the suitability of this assumption by considering a number of alternative copula models. In particular, we use combinations of pair-wise copulas of conditional distributions to model multiple sources of risk. We find that this approach is generally preferred by model-fitting criteria in the applications considered here. We demonstrate that alternative approaches to modeling dependencies in a portfolio of risks may have significant implications for premium rates in crop insurance.
C1 [Goodwin, Barry K.] N Carolina State Univ, Dept Econ, Raleigh, NC 27695 USA.
[Goodwin, Barry K.] N Carolina State Univ, Dept Agr & Resource Econ, Raleigh, NC 27695 USA.
[Hungerford, Ashley] USDA, ERS, Washington, DC USA.
RP Goodwin, BK (reprint author), N Carolina State Univ, Dept Econ, Raleigh, NC 27695 USA.
EM barry_goodwin@ncsu.edu
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PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0002-9092
EI 1467-8276
J9 AM J AGR ECON
JI Am. J. Agr. Econ.
PD APR
PY 2015
VL 97
IS 3
BP 879
EP 896
DI 10.1093/ajae/aau086
PG 18
WC Agricultural Economics & Policy; Economics
SC Agriculture; Business & Economics
GA CG7RF
UT WOS:000353501500011
ER
PT J
AU D'Elia, J
Haig, SM
Johnson, M
Marcot, BG
Young, R
AF D'Elia, Jesse
Haig, Susan M.
Johnson, Matthew
Marcot, Bruce G.
Young, Richard
TI Activity-specific ecological niche models for planning reintroductions
of California condors (Gymnogyps californianus)
SO BIOLOGICAL CONSERVATION
LA English
DT Article
DE Activity-specific niche; California condor; Ecological niche model;
Endangered species; Habitat; MAXENT; Reintroduction
ID HABITAT SUITABILITY MODELS; VULTURE GYPAETUS-BARBATUS; SAMPLE SELECTION
BIAS; MAXIMUM-ENTROPY; CONSERVATION TOOL; NESTING HABITAT; SITE
SELECTION; GYPS-FULVUS; DISTRIBUTIONS; RECOVERY
AB Ecological niche models can be a useful tool to identify candidate reintroduction sites for endangered species but have been infrequently used for this purpose. In this paper, we (1) develop activity-specific ecological niche models (nesting, roosting, and feeding) for the critically endangered California condor (Gymnogyps californianus) to aid in reintroduction planning in California, Oregon, and Washington, USA, (2) test the accuracy of these models using empirical data withheld from model development, and (3) integrate model results with information on condor movement ecology and biology to produce predictive maps of reintroduction site suitability. Our approach, which disentangles niche models into activity-specific components, has applications for other species where it is routinely assumed (often incorrectly) that individuals fulfill all requirements for life within a single environmental space. Ecological niche models conformed to our understanding of California condor ecology, had good predictive performance when tested with data withheld from model development, and aided in the identification of several candidate reintroduction areas outside of the current distribution of the species. Our results suggest there are large unoccupied regions of the California condor's historical range that have retained ecological features similar to currently occupied habitats, and thus could be considered for future reintroduction efforts. Combining our activity-specific ENMs with ground reconnaissance and information on other threat factors that could not be directly incorporated into empirical ENMs will ultimately improve our ability to select successful reintroduction sites for the California condor. Published by Elsevier Ltd.
C1 [D'Elia, Jesse; Young, Richard] US Fish & Wildlife Serv, Pacific Reg Off, Portland, OR 97232 USA.
[D'Elia, Jesse] Oregon State Univ, Dept Fisheries & Wildlife, Corvallis, OR 97331 USA.
[Haig, Susan M.; Johnson, Matthew] US Geol Survey, Forest & Rangeland Ecosyst Sci Ctr, Corvallis, OR 97331 USA.
[Marcot, Bruce G.] US Forest Serv, Pacific NW Res Stn, Portland, OR 97205 USA.
RP D'Elia, J (reprint author), US Fish & Wildlife Serv, Pacific Reg Off, 911 NE 11th Ave, Portland, OR 97232 USA.
EM jesse_delia@fws.gov
FU USGS Forest and Rangeland Ecosystem Science Center; U.S. Fish and
Wildlife Service
FX We thank M. Betts and C. Epps for reviews of earlier versions of this
manuscript. Thanks to J. Brandt, J. Burnett, C. Cogan, D. George, and J.
Grantham who provided California condor occurrence data for this study.
J.W. Glendening provided atmospheric data which J. Kern helped compile.
S. Wilbur, J. Hamber, and J. Grantham provided information on historical
roost sites. We also thank C. Epps, M. Betts, P. Singleton, M. Raphael,
and G. Falxa for helpful discussions related to this paper. Funding for
this project was provided by USGS Forest and Rangeland Ecosystem Science
Center and the U.S. Fish and Wildlife Service. Any use of trade,
product, or firm names is for descriptive purposes only and does not
imply endorsement by the US Government. The findings and conclusions of
this article are those of the authors and do not necessarily represent
the views of the U.S. Fish and Wildlife Service.
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PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0006-3207
EI 1873-2917
J9 BIOL CONSERV
JI Biol. Conserv.
PD APR
PY 2015
VL 184
BP 90
EP 99
DI 10.1016/j.biocon.2015.01.002
PG 10
WC Biodiversity Conservation; Ecology; Environmental Sciences
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA CG1BE
UT WOS:000353007200011
ER
PT J
AU Hoban, S
Strand, A
Fraga, N
Richards, C
Schlarbaum, S
AF Hoban, Sean
Strand, Allan
Fraga, Naomi
Richards, Chris
Schlarbaum, Scott
TI Developing quantitative seed sampling protocols using simulations: A
reply to comments from Guja et al. and Guerrant et al.
SO BIOLOGICAL CONSERVATION
LA English
DT Letter
ID EX-SITU
C1 [Hoban, Sean] Univ Tennessee, Natl Inst Math & Biol Synth NIMBioS, Knoxville, TN 37919 USA.
[Strand, Allan] Coll Charleston, Dept Biol, Charleston, SC 29424 USA.
[Fraga, Naomi] Rancho Santa Ana Bot Garden, Claremont, CA 91711 USA.
[Richards, Chris] USDA ARS, Plant Germplasm Preservat Unit, Natl Ctr Genet Resources Preservat, Ft Collins, CO 80521 USA.
[Schlarbaum, Scott] Univ Tennessee, Dept Forestry Wildlife & Fisheries, Knoxville, TN 37919 USA.
RP Hoban, S (reprint author), Univ Tennessee, Natl Inst Math & Biol Synth NIMBioS, Knoxville, TN 37919 USA.
EM shoban@alumni.nd.edu; stranda@cofc.edu; nfraga@rsabg.org;
Chris.Richards@ars.usda.gov; tenntip@utk.edu
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PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0006-3207
EI 1873-2917
J9 BIOL CONSERV
JI Biol. Conserv.
PD APR
PY 2015
VL 184
BP 469
EP 470
DI 10.1016/j.biocon.2015.02.021
PG 2
WC Biodiversity Conservation; Ecology; Environmental Sciences
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA CG1BE
UT WOS:000353007200053
ER
PT J
AU Li, XH
Lee, WS
Li, MZ
Ehsani, R
Mishra, AR
Yang, CH
Mangan, RL
AF Li, Xiuhua
Lee, Won Suk
Li, Minzan
Ehsani, Reza
Mishra, Ashish R.
Yang, Chenghai
Mangan, Robert L.
TI Feasibility study on Huanglongbing (citrus greening) detection based on
WorldView-2 satellite imagery
SO BIOSYSTEMS ENGINEERING
LA English
DT Article
DE Huanglongbing; Library construction; Satellite multispectral image;
Supervised classification
ID SPECTRAL DIFFERENCE; DISEASE DETECTION; WINTER-WHEAT; RED EDGE;
NITROGEN; YIELD; CLASSIFICATION; VEGETATION; BIOMASS
AB Huanglongbing (HLB) is a devastating citrus disease worldwide, without known cure. Since this disease shows visible symptoms on newly developed canopies, remote sensing methods based on spectral principles are considered as an effective tool. To explore a fast way to monitor HLB in large citrus groves, a satellite multispectral (MS) image with a 2-m resolution acquired by WorldView-2 was studied to evaluate its capability on HLB detection. Ground truth was conducted and two spectral libraries were constructed. Library 1 was based on RTK GPS locations, and Library 2 was combined with prior knowledge from the ground spectral features. To compare with the classification accuracy of previous work using airborne spectral images, the same classification methods were carried out. In the satellite MS image, Library 2 had higher average overall accuracy, higher Kappa coefficient, and higher producer's and user's accuracies than Library 1, indicating Library 2 which combined with prior knowledge was more effective. Mahalanobis distance had the highest overall accuracy of 81% and a Kappa coefficient of 0.464 with Library 2. The accuracy comparison between the satellite MS image and the airborne spectral images showed that the satellite MS image had the highest average producer's accuracy with Library 2, followed by the airborne MS image and the satellite MS image with Library 1, indicating that construction of an effective library was the most important step, and that the satellite MS image with a proper spatial resolution showed good potential to be a better choice than the airborne spectral image. (C) 2015 IAgrE. Published by Elsevier Ltd. All rights reserved.
C1 [Li, Xiuhua] Guangxi Univ, Coll Elect Engn, Nanning 530004, Peoples R China.
[Li, Xiuhua] Guangxi Expt Ctr Sci & Technol, Nanning 530004, Peoples R China.
[Li, Xiuhua; Li, Minzan] China Agr Univ, Key Lab Modern Precis Agr Integrat Res, MOE, Beijing 100083, Peoples R China.
[Li, Xiuhua; Lee, Won Suk] Univ Florida, Dept Agr & Biol Engn, Gainesville, FL 32611 USA.
[Ehsani, Reza; Mishra, Ashish R.] Univ Florida, Ctr Citrus Res & Educ, Lake Alfred, FL 33850 USA.
[Yang, Chenghai] USDA ARS, Southern Plains Agr Res Ctr, College Stn, TX 77845 USA.
[Mangan, Robert L.] USDA ARS, Subtrop Hort Res Stn, Miami, FL 33158 USA.
RP Lee, WS (reprint author), Univ Florida, Dept Agr & Biol Engn, Gainesville, FL 32611 USA.
EM wslee@ufl.edu
OI Lee, Won Suk/0000-0002-9420-4789
FU Florida Department of Citrus; China High Technology Research,
Development Research Fund [2013AA102303]; 948 Project [2011-G32];
National Natural Science Foundation of China [31401290]; Guangxi
Experiment Centre of Science and Technology [YXKT2014003]
FX The authors would like to thank Dr. Ce Yang, Dr. Asish Skaria, Dr.
Ferhat Kurtulmus, Mr. Anurag Katti and Mr. John Simmons in the Precision
Agriculture Laboratory, Agricultural and Biological Engineering
Department, University of Florida for their kind support and assistance
on the ground truth experiment, and statistical analysis. This study was
supported by the Florida Department of Citrus, the China High Technology
Research, Development Research Fund (2013AA102303), 948 Project
(2011-G32), the National Natural Science Foundation of China (31401290),
and Guangxi Experiment Centre of Science and Technology (YXKT2014003).
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PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 1537-5110
EI 1537-5129
J9 BIOSYST ENG
JI Biosyst. Eng.
PD APR
PY 2015
VL 132
BP 28
EP 38
DI 10.1016/j.biosystemseng.2015.01.009
PG 11
WC Agricultural Engineering; Agriculture, Multidisciplinary
SC Agriculture
GA CG6PU
UT WOS:000353425000003
ER
PT J
AU Hadlocon, LJS
Soboyejo, ABO
Zhao, LY
Zhu, HP
AF Hadlocon, Lara Jane S.
Soboyejo, Alfred B. O.
Zhao, Lingying
Zhu, Heping
TI Statistical modelling of ammonia absorption in an acid spray scrubber
SO BIOSYSTEMS ENGINEERING
LA English
DT Article
DE Acid spray scrubbing; Ammonia; Ammonia absorption; Gas absorption;
Statistical modelling
ID LIVESTOCK OPERATIONS; EMISSIONS; AIR
AB The use of acid spray wet scrubbers for recovering ammonia (NH3) emissions is promising due to its high NH3 removal efficiency, simplicity in design, and minimal pressure drop contribution on fans. An experimental study was conducted to evaluate the performance of a lab-optimised acid spray scrubber using simple modelling tools. Important parameters that significantly affect scrubber efficiency were identified as inlet NH3 concentration, air retention time, Sauter mean diameter of spray droplets, and liquid flow rate. Two statistical models (additive and multiplicative models) were developed from the experimental data using regression analysis of scrubber efficiency as a function of the significant operating parameters. The additive model had better performance accuracy with an R-2 value of 0.93, MSE of 0, RMSE of 0.06, and MAPE of 8.89%. Both models have good predictive ability based on residual analysis, power analysis, and cross-evaluation. This study was able to develop simplified models to aid in predicting NH3 removal efficiency of an acid spray scrubber, which can be installed at animal facilities for NH3 abatement. (C) 2015 IAgrE. Published by Elsevier Ltd. All rights reserved.
C1 [Hadlocon, Lara Jane S.; Soboyejo, Alfred B. O.; Zhao, Lingying] Ohio State Univ, Dept Food Agr & Biol Engn, Columbus, OH 43210 USA.
[Zhu, Heping] ARS, USDA, Wooster, OH 44691 USA.
RP Zhao, LY (reprint author), Ohio State Univ, Dept Food Agr & Biol Engn, 590 Woody Hayes Dr, Columbus, OH 43210 USA.
EM hadlocon.1@osu.edu; soboyejo.2@osu.edu; zhao.119@osu.edu;
heping.zhu@ars.usda.gov
FU National Research Initiative Competitive Grant from the USDA Cooperative
State Research, Education, and Extension Service Air Quality Program
[2008-55112-1876]
FX This project was supported by National Research Initiative Competitive
Grant No. 2008-55112-1876 from the USDA Cooperative State Research,
Education, and Extension Service Air Quality Program. The authors would
also like to thank the help and contributions of Dr. Roderick Manuzon,
Barry Nudd of USDA-ARS, Carl Cooper, and Jared Felder.
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PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 1537-5110
EI 1537-5129
J9 BIOSYST ENG
JI Biosyst. Eng.
PD APR
PY 2015
VL 132
BP 88
EP 95
DI 10.1016/j.biosystemseng.2015.02.003
PG 8
WC Agricultural Engineering; Agriculture, Multidisciplinary
SC Agriculture
GA CG6PU
UT WOS:000353425000009
ER
PT J
AU Brantley, ST
Miniat, CF
Elliott, KJ
Laseter, SH
Vose, JM
AF Brantley, Steven T.
Miniat, Chelcy Ford
Elliott, Katherine J.
Laseter, Stephanie H.
Vose, James M.
TI Changes to southern Appalachian water yield and stormflow after loss of
a foundation species
SO ECOHYDROLOGY
LA English
DT Article
DE Adelges tsugae; flow duration curves; forest health; frequency pairing;
hemlock woolly adelgid; paired watersheds; storm hydrograph; Tsuga
canadensis; water yield
ID FOREST ECOSYSTEMS; TSUGA-CANADENSIS; EASTERN HEMLOCK; SNOW ENVIRONMENTS;
PARADIGM SHIFT; TREE MORTALITY; TIMBER HARVEST; CLIMATE-CHANGE;
STREAMFLOW; CATCHMENT
AB Few studies have examined how insect outbreaks affect landscape-level hydrologic processes. We report the hydrologic effects of the invasive, exotic hemlock woolly adelgid (HWA) in a headwater catchment in the southern Appalachian Mountains. The study watershed experienced complete mortality of an evergreen tree species, Tsuga canadensis (L.) Carr. (eastern hemlock), after infestation was first detected in 2003. Hemlock mortality resulted in a similar to 6% reduction in basal area in the watershed, and this loss was primarily concentrated in riparian zones. We used a paired-watershed approach to quantify changes in water yield and peak stormflow using streamflow data from the infested watershed and a nearby watershed with significantly lower hemlock basal area. We hypothesized that yield would increase shortly after hemlock infestation but decrease over the longer-term. We found that annual yield did not increase significantly in any year after infestation but decreased significantly by 120cm (similar to 8%) in 2010. Monthly yield also decreased after infestation, but changes were limited to the dormant season. The decline in yield is likely to persist as hemlock is replaced by species with higher transpiration rates. Peakflow increased significantly after infestation during the two largest flow events in the post-infestation period. Changes in stormflow during extreme events may have been temporary as another evergreen, Rhododendron maximum, may have mitigated some of the changes after hemlock loss. Thus, streams draining watersheds where eastern hemlock has been lost due to HWA infestation demonstrate permanent reductions in yield and transient increases in peakflow during large-flow events. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.
C1 [Brantley, Steven T.; Miniat, Chelcy Ford; Elliott, Katherine J.; Laseter, Stephanie H.] US Forest Serv, USDA, Southern Res Stn, Coweeta Hydrol Lab, Otto, NC 28763 USA.
[Brantley, Steven T.] Univ Minnesota, Dept Forest Resources, St Paul, MN 55108 USA.
[Vose, James M.] US Forest Serv, USDA, Southern Res Stn, Ctr Integrated Forest Sci, Raleigh, NC 27695 USA.
RP Brantley, ST (reprint author), Univ Minnesota, Dept Forest Resources, St Paul, MN 55108 USA.
EM sbrantle@umn.edu
OI Miniat, Chelcy/0000-0002-3266-9783
FU US Department of Agriculture Forest Service; Southern Research Station;
National Science Foundation [DEB0218001, DEB0823293]
FX This study was supported by the US Department of Agriculture Forest
Service, Southern Research Station, and by National Science Foundation
grants DEB0218001 and DEB0823293 to the Coweeta LTER programme at the
University of Georgia. Any opinions, findings, conclusions or
recommendations expressed in the material are those of the authors and
do not necessarily reflect the views of the National Science Foundation
or the University of Georgia. We are grateful to Mark Green, Jennifer
Knoepp and Wayne Swank for providing helpful comments on previous
versions of this manuscript. We are especially thankful to Younes Alila
for his guidance concerning the implementation and interpretation of the
FP analysis. We acknowledge the support of the long-term climate and
hydrologic data network at Coweeta Hydrologic Lab as well as many
individuals, past and present, especially P. Clinton and C. Marshall for
field and climate data collection and processing.
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PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1936-0584
EI 1936-0592
J9 ECOHYDROLOGY
JI Ecohydrology
PD APR
PY 2015
VL 8
IS 3
BP 518
EP 528
DI 10.1002/eco.1521
PG 11
WC Ecology; Environmental Sciences; Water Resources
SC Environmental Sciences & Ecology; Water Resources
GA CG4FE
UT WOS:000353238400016
ER
PT J
AU Uchimiya, M
Hiradate, S
Antal, MJ
AF Uchimiya, Minori
Hiradate, Syuntaro
Antal, Michael Jerry, Jr.
TI Influence of Carbonization Methods on the Aromaticity of Pyrogenic
Dissolved Organic Carbon
SO ENERGY & FUELS
LA English
DT Article
ID PARALLEL FACTOR-ANALYSIS; RESONANCE MASS-SPECTROMETRY; PYROLYSIS
TEMPERATURE; BLACK CARBON; FLUORESCENCE SPECTROSCOPY; FUNCTIONAL-GROUPS;
BIOCHAR; BIOMASS; CHARCOAL; MATTER
AB Dissolved organic carbon (DOC) components of soil amendments, such as biochar, will influence the fundamental soil chemistry, including the metal speciation, nutrient availability, and microbial activity. Quantitative correlation is necessary between (i) pyrogenic DOC components of varying aromaticity and ionizable (carboxyl and hydroxyl) substituents and (ii) bulk and solution properties of biochars. This study employed fluorescence excitationemission (EEM) spectrophotometry with parallel factor analysis (PARAFAC) to understand the influence of the pyrolysis platform (flash and high-yield carbonization, slow pyrolysis, and fast pyrolysis) and solution pH on the DOC structure of carbonaceous materials. The PARAFAC fingerprint representative of conjugated, polyaromatic DOC correlated (Pearsons r >= 0.6; p < 0.005) with (i) volatile matter content and (ii) total organic carbon and nitrogen concentrations in water and base (50100 mM NaOH) extracts. Electric conductivity of the extracts correlated with S (indicative of labile sulfate species) and Na + K concentrations (r > 0.9; p < 0.0005). The pH-dependent changes in fluorescence peak position and intensity suggested (i) protonation of carboxylate/phenolic functionalities and (ii) acid-induced aggregation of colloidal particles for <= 350 degrees C slow-pyrolysis biochars; DOC of high-yield/flash carbonization charcoals and >= 500 degrees C slow-pyrolysis biochars were less sensitive to pH. Solid-state 13C cross-polarization and magic angle spinning nuclear magnetic resonance analysis of bulk aromaticity (-C-C peak at 110-160 ppm) suggested that both recalcitrant and labile fluorescence DOC fingerprints are composed of polyaromatic structures that begin to form near 350 degrees C. These biochar-borne DOC components of varying aromaticity and carboxyl substituents will participate in hydrophobic and hydrogen-bonding interactions with soil components that will ultimately impact the biogeochemical cycles.
C1 [Uchimiya, Minori] ARS, Southern Reg Res Ctr, USDA, New Orleans, LA 70124 USA.
[Hiradate, Syuntaro] Natl Inst Agroenvironm Sci, Tsukuba, Ibaraki 3058604, Japan.
[Antal, Michael Jerry, Jr.] Univ Hawaii Manoa, Sch Ocean & Earth Sci & Technol, Hawaii Nat Energy Inst, Honolulu, HI 96822 USA.
RP Uchimiya, M (reprint author), ARS, Southern Reg Res Ctr, USDA, 1100 Robert E Lee Blvd, New Orleans, LA 70124 USA.
EM sophie.uchimiya@ars.usda.gov
FU National Science Foundation [CBET11-58965]; Coral Industries Endowment
of the University of Hawaii Foundation
FX This work was partly supported by the National Science Foundation (Award
CBET11-58965) and the Coral Industries Endowment of the University of
Hawaii Foundation. The authors acknowledge Drs. Isabel Lima and Keri
Cantrell for providing manure feedstocks and biochars.
NR 53
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U1 4
U2 43
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0887-0624
EI 1520-5029
J9 ENERG FUEL
JI Energy Fuels
PD APR
PY 2015
VL 29
IS 4
BP 2503
EP 2513
DI 10.1021/acs.energyfuels.5b00146
PG 11
WC Energy & Fuels; Engineering, Chemical
SC Energy & Fuels; Engineering
GA CG4JQ
UT WOS:000353251800050
ER
PT J
AU Kumar, V
Xiao, YF
McKenzie, CL
Osborne, LS
AF Kumar, Vivek
Xiao, Yingfang
McKenzie, Cindy L.
Osborne, Lance S.
TI Early establishment of the phytoseiid mite Amblyseius swirskii (Acari:
Phytoseiidae) on pepper seedlings in a Predator-in-First approach
SO EXPERIMENTAL AND APPLIED ACAROLOGY
LA English
DT Article
DE Banker plants; Prophylactic biological control; Predatory mites;
Beneficials; Pest management
ID DORSALIS THYSANOPTERA THRIPIDAE; TABACI HEMIPTERA ALEYRODIDAE;
BIOLOGICAL-CONTROL; BEMISIA-TABACI; LEAF DOMATIA; BANKER PLANT;
FRANKLINIELLA-OCCIDENTALIS; ORNAMENTAL PEPPER; PEST-MANAGEMENT; CHILLI
THRIPS
AB The establishment of biocontrol agents is critical for success of biological control strategies. Predator-in-First (PIF) is a prophylactic control strategy that aims to establish predators before the appearance of pests in an agro-ecosystem. PIF uses the ability of generalist phytoseiid mites to survive, develop and reproduce on pollen and thus establish in the absence of prey. The early establishment of populations of natural enemies helps control the pests at their incipient stage of infestation. The current study was undertaken to screen pepper cultivars for their ability to support populations of the predatory mite Amblyseius swirskii Athias-Henriot in the absence of prey. Twenty-nine pepper cultivars (11 hot and 18 sweet) were tested through a series of experiments, and four cultivars (7141, 992-7141, FPP7039 and FPP9048) were found to sustain A. swirskii populations throughout the study period. The initial application of pollen was important for establishment and maintenance of the predatory mites within the greenhouse system. Among the three screening experiments, high densities of mites were obtained in the experiment where 20 mites were released per plant, even reaching densities of [100 mites/plant. Recovery of predatory mites was significantly higher (ca. 2-3 fold) on the four pepper cultivars when predatory mites were mass released using an indirect method (banker plants) than when they were released directly on the seedlings, suggesting an advantage of passive continuous release. Future work will evaluate the selected pepper cultivars with the PIF strategy under greenhouse and field production conditions.
C1 [Kumar, Vivek; Xiao, Yingfang; Osborne, Lance S.] Univ Florida, Mid Florida Res & Educ Ctr, Dept Entomol & Nematol, Apopka, FL 32703 USA.
[McKenzie, Cindy L.] USDA ARS, US Hort Res Lab, Ft Pierce, FL 34945 USA.
RP Kumar, V (reprint author), Univ Florida, Mid Florida Res & Educ Ctr, Dept Entomol & Nematol, 2725 South Binion Rd, Apopka, FL 32703 USA.
EM vivekiari@ufl.edu
FU EPA; USDA/FDACS-Specialty Crop Block Grant Program; USDA-ARS
Floriculture and Nursery Research Initiative; IFAS/UF Line Item grants
program
FX The authors would like to thank Katherine Houben, John Prokop, Irma
Herrera, Fabieli Irizarry, and Younes Belmourd for their technical
assistance. We would also like to thank Dr. James Colee for assisting in
the statistical analysis and the internal reviewers Drs. Joseph Patt, J.
Howard Frank and Aaron Dickey for their constructive criticism and
helpful suggestions. Funding for this study was supported by Grants from
the EPA, USDA/FDACS-Specialty Crop Block Grant Program, the USDA-ARS
Floriculture and Nursery Research Initiative, and IFAS/UF Line Item
grants program.
NR 49
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Z9 6
U1 4
U2 20
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0168-8162
EI 1572-9702
J9 EXP APPL ACAROL
JI Exp. Appl. Acarol.
PD APR
PY 2015
VL 65
IS 4
BP 465
EP 481
DI 10.1007/s10493-015-9895-2
PG 17
WC Entomology
SC Entomology
GA CG4VY
UT WOS:000353286700005
PM 25772442
ER
PT J
AU Wei, Y
Bevers, M
Belval, E
Bird, B
AF Wei, Yu
Bevers, Michael
Belval, Erin
Bird, Benjamin
TI A Chance-Constrained Programming Model to Allocate Wildfire Initial
Attack Resources for a Fire Season
SO FOREST SCIENCE
LA English
DT Article
DE fire simulation; suppression; exceedance probability; stochastic
programming
ID STANDARD RESPONSE MODEL; UNITED-STATES; MANAGEMENT; SUPPRESSION;
CONTAINMENT; ONTARIO
AB This research developed a chance-constrained two-stage stochastic programming model to support wildfire initial attack resource acquisition and location on a planning unit for a fire season. Fire growth constraints account for the interaction between fire perimeter growth and construction to prevent overestimation of resource requirements. We used this model to examine daily resource stationing budget requirements and suppression resource types and deployments within a fire planning unit. A chance constraint ensures the conditional probability of one or more fire escapes on days with ignitions below a predefined threshold. This chance-constrained approach recognizes that funding for local resources is unlikely to be sufficient for containing all fires in initial attack. For test cases, we used 1,655 fires occurring over 935 historical fire days from the Black Hills Fire Planning Unit in South Dakota. We tested our model under a variety of fire suppression assumptions to estimate appropriate daily stationing budget levels and resource allocations.
C1 [Wei, Yu] Colorado State Univ, Forest Rangeland & Watershed Stewardship, Ft Collins, CO 80523 USA.
[Bevers, Michael; Bird, Benjamin] USDA, Forest Serv, Rocky Mt Res Stn, Logan, UT USA.
[Belval, Erin] Colorado State Univ, Ft Collins, CO 80523 USA.
RP Wei, Y (reprint author), Colorado State Univ, Forest Rangeland & Watershed Stewardship, Ft Collins, CO 80523 USA.
EM yu.wei@colostate.edu; michael.bevers@colostate.edu;
erin.belval@colostate.edu; bjbird@fs.fed.us
FU USDA Forest Service [11-CS-11221636-193]; Rocky Mountain Research
Station [11-CS-11221636-193]; Colorado State University
[11-CS-11221636-193]
FX This research was supported by Agreement 11-CS-11221636-193 between the
USDA Forest Service, Rocky Mountain Research Station and Colorado State
University. We thank the Northern Great Plains Emergency Coordination
Center and the Fire Program Analysis staff for the data they provided.
NR 41
TC 3
Z9 3
U1 1
U2 8
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
EI 1938-3738
J9 FOREST SCI
JI For. Sci.
PD APR
PY 2015
VL 61
IS 2
BP 278
EP 288
DI 10.5849/forsci.14-112
PG 11
WC Forestry
SC Forestry
GA CG2DI
UT WOS:000353084700008
ER
PT J
AU Paveglio, TB
Moseley, C
Carroll, MS
Williams, DR
Davis, EJ
Fischer, AP
AF Paveglio, Travis B.
Moseley, Cassandra
Carroll, Matthew S.
Williams, Daniel R.
Davis, Emily Jane
Fischer, A. Paige
TI Categorizing the Social Context of the Wildland Urban Interface:
Adaptive Capacity for Wildfire and Community "Archetypes"
SO FOREST SCIENCE
LA English
DT Article
DE wildland fire; adaptive capacity; wildland urban interface; social
diversity; hazards
ID RODEO-CHEDISKI FIRE; CLIMATE-CHANGE; RISK-MITIGATION; MANAGEMENT;
PREPAREDNESS; PERCEPTIONS; COMPLEXITY; CALIFORNIA; RESIDENTS; SCALE
AB Understanding the local context that shapes collective response to wildfire risk continues to be a challenge for scientists and policymakers. This study utilizes and expands on a conceptual approach for understanding adaptive capacity to wildfire in a comparison of 18 past case studies. The intent is to determine whether comparison of local social context and community characteristics across cases can identify community "archetypes" that approach wildfire planning and mitigation in consistently different ways. Identification of community archetypes serves as a potential strategy for collaborating with diverse populations at risk from wildfire and designing tailored messages related to wildfire risk mitigation. Our analysis uncovered four consistent community archetypes that differ in terms of the local social context and community characteristics that continue to influence response to wildfire risk. Differences among community archetypes include local communication networks, reasons for place attachment or community identity, distrust of government, and actions undertaken to address issues of forest health and esthetics. Results indicate that the methodological approach advanced in this study can be used to draw more consistent lessons across case studies and provide the means to test different communication strategies among archetypes.
C1 [Paveglio, Travis B.] Univ Idaho, Moscow, ID 83843 USA.
[Moseley, Cassandra] Univ Oregon, Eugene, OR 97403 USA.
[Carroll, Matthew S.] Washington State Univ, Pullman, WA 99164 USA.
[Williams, Daniel R.] USDA, Forest Serv, Washington, DC USA.
[Davis, Emily Jane] Oregon State Univ, Corvallis, OR 97331 USA.
[Fischer, A. Paige] Univ Michigan, Ann Arbor, MI 48109 USA.
RP Paveglio, TB (reprint author), Univ Idaho, Moscow, ID 83843 USA.
EM tpaveglio@uidaho.edu; cmoseley@uoregon.edu; carroll@wsu.edu;
drwilliams@fs.fed.us; EmilyJane.Davis@Oregonstate.edu; apfisch@umich.edu
FU USDA Disaster Resilience for Rural Communities grant [OREW-2011-03805]
FX This research was supported by a USDA Disaster Resilience for Rural
Communities grant, Project # OREW-2011-03805.
NR 92
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U1 4
U2 17
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
EI 1938-3738
J9 FOREST SCI
JI For. Sci.
PD APR
PY 2015
VL 61
IS 2
BP 298
EP 310
DI 10.5849/forsci.14-036
PG 13
WC Forestry
SC Forestry
GA CG2DI
UT WOS:000353084700010
ER
PT J
AU Sun, X
Zhang, DW
Butler, BJ
AF Sun, Xing
Zhang, Daowei
Butler, Brett J.
TI Timberland Ownerships and Reforestation in the Southern United States
SO FOREST SCIENCE
LA English
DT Article
DE institutional timberland ownership; reforestation behavior; forest
management; plot-level data; logistic regression
ID PRIVATE FOREST LANDOWNERS; MANAGEMENT INTENSITY; US SOUTH; INVESTMENT;
INDUSTRIAL; HARVEST; OBJECTIVES; BEHAVIOR; COST
AB Timberland owners have different objectives and apply different management methods and management intensities to their lands. In this study, we look into the reforestation behaviors of various timberland owners in the southern United States based on plot-level data from the latest complete USDA Forest Service Forest Inventory and Analysis cycle. Our results show that, after controlling for market and locational variables for all sampled plots in the study, the probability of reforestation was higher for institutional and industrial owners than for nonindustrial private forest owners and was the highest for timberland investment management organizations. These findings imply that the institutional timberland owners do reforest and embrace sustainable forestry practices.
C1 [Sun, Xing] Shanghai Univ Finance & Econ, Shanghai, Peoples R China.
[Zhang, Daowei] Auburn Univ, Auburn, AL 36849 USA.
[Butler, Brett J.] USDA, Forest Serv, Washington, DC USA.
RP Sun, X (reprint author), Shanghai Univ Finance & Econ, Shanghai, Peoples R China.
EM sun.xing@mail.shufe.edu.cn; zhangdw@auburn.edu; bbutler01@fs.fed.us
FU USDA Agriculture and Food Research Institute (AFRI) Competitive Grant
[2011-67023-30051]
FX This project is funded in part by USDA Agriculture and Food Research
Institute (AFRI) Competitive Grant No. 2011-67023-30051.
NR 51
TC 0
Z9 0
U1 2
U2 6
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
EI 1938-3738
J9 FOREST SCI
JI For. Sci.
PD APR
PY 2015
VL 61
IS 2
BP 336
EP 343
DI 10.5849/forsci.13-192
PG 8
WC Forestry
SC Forestry
GA CG2DI
UT WOS:000353084700014
ER
PT J
AU Ganey, JL
Bird, BJ
Baggett, LS
Jenness, JS
AF Ganey, Joseph L.
Bird, Benjamin J.
Baggett, L. Scott
Jenness, Jeffrey S.
TI Density of Large Snags and Logs in Northern Arizona Mixed-Conifer and
Ponderosa Pine Forests
SO FOREST SCIENCE
LA English
DT Article
DE human access; logs; management guidelines; ponderosa pine forest; snags
ID COARSE WOODY DEBRIS; HUMAN ACCESS; LONGITUDINAL DATA; FUEL LOADINGS;
UNITED-STATES; MODELS; USA; ECOSYSTEMS; ECOLOGY
AB Large snags and logs provide important biological legacies and resources for native wildlife, yet data on populations of large snags and logs and factors influencing those populations are sparse. We monitored populations of large snags and logs in mixed-conifer and ponderosa pine (Pinus ponderosa) forests in northern Arizona from 1997 through 2012. We modeled density of large snags and logs as a function of forest type, time period, and environmental characteristics of sampled plots. Our objective was to build models that best explained current densities of these structures using these available covariates. The best model for density of large snags indicated that snag density was greater in mixed-conifer than in ponderosa pine forests, lower in plots with evidence of past timber or fuelwood harvest than in plots lacking such evidence, and covaried positively with mean slope and distance to road. The best model for density of large logs indicated that log density was greater in mixed-conifer than in ponderosa pine forests and covaried positively with solar insolation and surface ratio (an index of topographic roughness). The best snag model predicted that current US Department of Agriculture (USDA) Forest Service guidelines for retention of large snags were met only in mixed-conifer forests lacking evidence of past harvest activity. In contrast, the USDA Forest Service guidelines for retention of large logs were met in both forest types. Our results suggest that ease of human access and management history influence density of large snags, that current snag guidelines are unlikely to be met without considering these impacts, and that those guidelines may not be readily attainable in much of the landscape.
C1 [Ganey, Joseph L.] US Forest Serv, USDA, Rocky Mt Res Stn, Flagstaff, AZ 86001 USA.
[Bird, Benjamin J.; Baggett, L. Scott] US Forest Serv, USDA, Flagstaff, AZ USA.
[Jenness, Jeffrey S.] Jenness Enterprises, Flagstaff, AZ USA.
RP Ganey, JL (reprint author), US Forest Serv, USDA, Rocky Mt Res Stn, Flagstaff, AZ 86001 USA.
EM jganey@fs.fed.us; bjbird@fs.fed.us; lsbaggett@fs.fed.us;
jeffj@jennessent.com
OI Jenness, Jeff/0000-0002-9448-1444
NR 52
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U1 2
U2 9
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
EI 1938-3738
J9 FOREST SCI
JI For. Sci.
PD APR
PY 2015
VL 61
IS 2
BP 353
EP 362
DI 10.5849/forsci.13-125
PG 10
WC Forestry
SC Forestry
GA CG2DI
UT WOS:000353084700016
ER
PT J
AU Haywood, JD
AF Haywood, James D.
TI Influence of Herbicides and Improvement Cutting, Fertilization, and
Prescribed Fire on Planted Longleaf Pine Development
SO FOREST SCIENCE
LA English
DT Article
DE diammonium phosphate; hexazinone; Pinus palustris Mill.; triclopyr;
understory cover; vegetation management
ID 6 GROWING SEASONS; HEIGHT GROWTH; SEEDLINGS; HEXAZINONE; SURVIVAL;
HERBAGE; USA
AB There is an interest in restoring longleaf pine (Pinus palustris Mill.) across its native range in the southeastern United States, and establishment of longleaf pine on much of its original range requires artificial regeneration and management of competing vegetation after planting. In Louisiana, two fertilization levels (No or Yes [36 kg/ha nitrogen and 40 kg/ha phosphorus]) in combination with three vegetation treatments (check, five prescribed fires [PFs], or multiyear vegetation control [IVM]) were applied to longleaf pine plantings established in a randomized complete block factorial design (alpha = 0.05). After 12 years, survival averaged 61% across the six-treatment combinations. Fertilization did not affect longleaf pine growth or stand production, and thus, native fertility was not limiting pine development. Longleaf pine bolewood production was significantly greater on IVM plots (165 m(3)/ha) than on check and PF plots (average of 113 m(3)/ha). In the 13th growing season, IVM plots had significantly less understory tree cover (51%) than checks (80%), but PF plots had the least tree cover (16%) and the most grass (5%) and forb (10%) cover. Fertilization significantly increased understory tree cover (58%) compared with that for unfertilized plots (40%), but woody vine cover was significantly less on fertilized plots (3%) than on unfertilized plots (6%).
C1 US Forest Serv, USDA, Southern Res Stn, Pineville, LA 71430 USA.
RP Haywood, JD (reprint author), US Forest Serv, USDA, Southern Res Stn, Pineville, LA 71430 USA.
EM jameshaywood@suddenlink.net
NR 51
TC 0
Z9 0
U1 2
U2 15
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
EI 1938-3738
J9 FOREST SCI
JI For. Sci.
PD APR
PY 2015
VL 61
IS 2
BP 363
EP 369
DI 10.5849/forsci.13-179
PG 7
WC Forestry
SC Forestry
GA CG2DI
UT WOS:000353084700017
ER
PT J
AU Pringle, RJ
Cerveny, LK
Bradley, GA
AF Pringle, Richard J.
Cerveny, Lee K.
Bradley, Gordon A.
TI Implementation of the Forest Service Open Space Conservation Strategy in
Washington State: Exploring the Role of the National Forest System
SO FOREST SCIENCE
LA English
DT Article
DE national forest management; planning; policy; landscape
ID POLICY IMPLEMENTATION; PUBLIC-POLICY; US; MANAGEMENT; AREAS
AB The loss of open space was declared one of the "four threats to the health of our nation's forests" by former USDA Forest Service Chief Dale Bosworth in 2004. Since then, the agencywide Open Space Conservation Strategy (OM) was released and the "four threats" were incorporated into the agency's National Strategic Plan. These actions indicate that the OSCS is in the implementation stage of the policy process; however, interviews conducted with line officers and program managers of the National Forest System (NFS) in Washington State revealed a more complex story. This research uses concepts from the policy implementation literature and the OSCS to explore how the NFS branch of the agency is engaging in open space conservation. The results indicate that there may be a lack of awareness of the OHS, partners are essential to successful implementation, and the role of the NFS is a "neighbor" and "final holder" of open space. Additional findings discuss barriers to the NFS engagement in open space conservation. Where appropriate, recommendations that could improve implementation are suggested and some new resources that aid implementation are shared.
C1 [Pringle, Richard J.] US Forest Serv, USDA, Salmon Challis Natl Forest, Salmon, ID 83467 USA.
[Cerveny, Lee K.] US Forest Serv, USDA, Pacific NW Res Stn, Salmon, ID USA.
[Bradley, Gordon A.] Univ Washington, Sch Environm & Forest Sci, Seattle, WA 98195 USA.
RP Pringle, RJ (reprint author), US Forest Serv, USDA, Salmon Challis Natl Forest, Salmon, ID 83467 USA.
EM rpringle@fs.fed.us; lcerveny@fs.fed.us; gbradley@uw.edu
NR 57
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Z9 0
U1 1
U2 6
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
EI 1938-3738
J9 FOREST SCI
JI For. Sci.
PD APR
PY 2015
VL 61
IS 2
BP 388
EP 396
DI 10.5849/forsci.13-512
PG 9
WC Forestry
SC Forestry
GA CG2DI
UT WOS:000353084700020
ER
PT J
AU Fan, ZF
Yao, Q
Dey, D
Spetich, M
Ezell, A
Shifley, S
Kabrick, J
Jensen, R
AF Fan, Zhaofei
Yao, Qi
Dey, Daniel
Spetich, Martin
Ezell, Andrew
Shifley, Stephen
Kabrick, John
Jensen, Randy
TI Efficacy and Associated Factors of Even- and Uneven-Aged Management to
Promote Oak Regeneration in the Missouri Ozarks
SO FOREST SCIENCE
LA English
DT Article
DE oak regeneration; advance reproduction; timber harvesting; Missouri
Ozarks; Missouri Ozarks Forest Ecosystem Project (MOFEP)
ID EASTERN NORTH-AMERICA; RED OAK; QUERCUS-RUBRA; SOUTHERN APPALACHIANS;
OVERSTORY DENSITY; UNITED-STATES; FORESTS; FIRE; LANDSCAPE; SEEDLINGS
AB Oak regeneration problems have been noted in the Missouri Ozarks and elsewhere in the eastern United States. Alteration of disturbance regimes, competition from nonoak species, and high overstory stocking are believed to be major barriers that impede oak regeneration. We studied regeneration in upland oak forests that were harvested by both even-aged (clearcutting) and uneven-aged (single-tree selection and group selection) regeneration methods, focusing on differences in oak regeneration among stands that received alternative harvest treatments. Ten years after treatments, the density of oak regeneration generally increased with increased removal of overstory trees, but only the clearcutting treatment resulted in a statistically significant increase in the density of oak seedlings and saplings over that in the no harvest treatment (the control). There were no differences among treatments in the relative proportions of oak seedlings and saplings as a whole or by size classes among the treatments. Successful oak regeneration after removal of overstory trees highly depends on the number and size of advance oak reproduction and is closely related to site conditions such as aspect and bedrock geology. Both site factors and advance oak reproduction must be considered when a regeneration method to promote oak is chosen. Compared with the uneven-aged methods (single-tree selection and group selection), clearcutting favored the red oak species over the white oak species.
C1 [Fan, Zhaofei] Auburn Univ, Sch Forestry & Wildlife Sci, Auburn, AL 36849 USA.
[Yao, Qi; Ezell, Andrew] Mississippi State Univ, Mississippi State, MS USA.
[Dey, Daniel; Spetich, Martin; Shifley, Stephen; Kabrick, John] US Forest Serv, USDA, No Res Stn, Washington, DC USA.
[Jensen, Randy] Missouri Dept Conservat, Jefferson City, MO USA.
RP Fan, ZF (reprint author), Auburn Univ, Sch Forestry & Wildlife Sci, Auburn, AL 36849 USA.
EM zzf0008@auburn.edu
FU USDA Forest Service, Northern Research Station
FX This study was funded by the USDA Forest Service, Northern Research
Station. The Missouri Department of Conservation provided the data. Drs.
Scott D. Roberts, Randy Rousseau, and Michael K. Crosby from the
Department of Forestry, Forestry and Wildlife Research Center,
Mississippi State University, reviewed this article. We thank them all.
NR 64
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Z9 2
U1 2
U2 13
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
EI 1938-3738
J9 FOREST SCI
JI For. Sci.
PD APR
PY 2015
VL 61
IS 2
BP 397
EP 408
DI 10.5849/forsci.13-069
PG 12
WC Forestry
SC Forestry
GA CG2DI
UT WOS:000353084700021
ER
PT J
AU Kobori, NN
Mascarin, GM
Jackson, MA
Schisler, DA
AF Kobori, Nilce N.
Mascarin, Gabriel M.
Jackson, Mark A.
Schisler, David A.
TI Liquid culture production of microsclerotia and submerged conidia by
Trichoderma harzianum active against damping-off disease caused by
Rhizoctonia solani
SO FUNGAL BIOLOGY
LA English
DT Article
DE Biofungicide; C:N ratio; Desiccation tolerance; Sclerotia; Soilborne
disease; Storage stability
ID BIOLOGICAL-CONTROL; COLLETOTRICHUM-TRUNCATUM; FERMENTATION; BIOCONTROL;
FUNGI; MEDIA; GERMINATION; PROPAGULES; MECHANISMS; EFFICACY
AB Media and culturing protocols were identified that supported the formation of submerged conidia and microsclerotia (MS) by Trichoderma harzianurn Rifai strain T-22 using liquid culture fermentation. Liquid media with a higher carbon concentration (36 g L-1) promoted MS formation at all C:N ratios tested. Hyphae aggregated to form MS after 2 d growth and after 7 d MS were fully melanized. This is the first report of MS formation by T. harzianum or any species of Trichodenna. Furthermore, submerged conidia formation was induced by liquid culture media, but yields, desiccation tolerance, and storage stability varied with C:N ratio and carbon rate. Air-dried MS granules (<4 % moisture) retained excellent shelf life under cool and unrefrigerated storage conditions with no loss in conidial production. A low-cost complex nitrogen source based on cottonseed flour effectively supported high MS yields. Amending potting mix with dried MS formulations reduced or eliminated damping-off of melon seedlings caused by Rhizoctonia solani. Together, the results provide insights into the liquid culture production, stabilization process, and bioefficacy of the hitherto unreported MS of T. harzianum as a potential biofungicide for use in integrated management programs against soilborne diseases. (C) 2014 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.
C1 [Kobori, Nilce N.; Mascarin, Gabriel M.; Jackson, Mark A.; Schisler, David A.] ARS, USDA, Crop Bioprotect Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
[Mascarin, Gabriel M.] Embrapa Rice & Beans, BR-75375000 Santo Antonio De Goias, Go, Brazil.
RP Mascarin, GM (reprint author), ARS, USDA, Crop Bioprotect Res Unit, Natl Ctr Agr Utilizat Res, 1815 N Univ St, Peoria, IL 61604 USA.
EM nnaomik@yahoo.com.br; gabriel.mascarin@embrapa.br;
mark.jackson@ars.usda.gov; david.schisler@ars.usda.gov
RI Mascarin, Gabriel/E-4646-2015
OI Mascarin, Gabriel/0000-0003-3517-6826
FU CNPq - Brasil (Conselho Nacional de Desenvolvimento Cientifico e
Tecnologico - Brazilian National Council for Scientific and
Technological Development); USDA
FX The first author was recipient of a post-doctoral scholarship from CNPq
- Brasil (Conselho Nacional de Desenvolvimento Cientifico e Tecnologico
- Brazilian National Council for Scientific and Technological
Development), and this work was partially sponsored by USDA.
NR 41
TC 6
Z9 6
U1 9
U2 33
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 1878-6146
EI 1878-6162
J9 FUNGAL BIOL-UK
JI Fungal Biol.
PD APR
PY 2015
VL 119
IS 4
BP 179
EP 190
DI 10.1016/j.funbio.2014.12.005
PG 12
WC Mycology
SC Mycology
GA CG0ZT
UT WOS:000353003500001
PM 25813507
ER
PT J
AU Lebel, T
Castellano, MA
Beever, RE
AF Lebel, Teresa
Castellano, Michael A.
Beever, Ross E.
TI Cryptic diversity in the sequestrate genus Stephanospora
(Stephanosporaceae: Agaricales) in Australasia
SO FUNGAL BIOLOGY
LA English
DT Article
DE Biodiversity; Corticioid; Cristinia; Lindtneria; Sequestrate fungi;
Systematics
ID MAXIMUM-LIKELIHOOD; POLYPORE FUNGI; MIXED MODELS; DIVERSIFICATION;
BASIDIOMYCOTA; SEQUENCES; HOST; PHYSALACRIACEAE; IDENTIFICATION;
COMBINATIONS
AB Historically a single name, Stephanospora flava, was applied to all collections of Stephanospora in Australasia. We used morphological characters with molecular support to differentiate and describe nine novel cryptic species, and refine the circumscription of S. flava. Stephanospora flava is herein restricted to bispored collections from Tasmania, and the quadrisporic Stephanospora tetraspora is raised to species level. Six species (four new) are endemic to Australia, S. flava s.s, S. tetraspora comb. nov., Stephanospora sheoak, Stephanospora cribbae, Stephanospora hystrispora, and Stephanospora occidentiaustralis. Three species Stephanospora poropingao, Stephanospora pounamu, and Stephanospora kanuka are endemic to New Zealand; and one species, Stephanospora aorangi occurs in both Australia and New Zealand. Two other new species, Stephanospora novae-caledoniae and Stephanospora papua, are endemic to New Caledonia or Papua New Guinea, respectively. Analyses of three nuclear gene regions (ITS, ef-1, and LSU) are consistent with current classifications of the family Stephanosporaceae. Athelidium aurantiacum is an outlier, with a strongly supported core of Cristinia (Glade I), Lindtneria (Clade II), Stephanospora, Mayamontana, and Lindtneria trachyspora (Clade III), and a novel lineage of environmental and sporocarp sequences (Clade IV). Taxonomic and nomenclatural issues raised by the presence of both type species of Stephanospora (Stephanospora caroticolor) and Lindtneria (L. trachyspora) in the same clade are discussed. (C) 2014 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.
C1 [Lebel, Teresa; Beever, Ross E.] Manaaki Whenua Landcare Res, Auckland 1142, New Zealand.
[Lebel, Teresa] Royal Bot Gardens Melbourne, Natl Herbarium Victoria, Melbourne, Vic 3141, Australia.
[Castellano, Michael A.] US Forest Serv, USDA, No Res Stn, Forest Sci Lab, Corvallis, OR 97331 USA.
RP Lebel, T (reprint author), Manaaki Whenua Landcare Res, Private Bag 92170, Auckland 1142, New Zealand.
EM lebelt@landcareresearch.co.nz
OI Lebel, Teresa/0000-0002-8592-1102
FU Foundation for Research, Science and Technology [CO9309]; Lottery
Science; New Zealand-United States Co-operative Science Programme;
National Science Foundation [BSR 9201421]; Commonwealth Scientific and
Industrial Research Organisation through ACIAR project [8736]; Royal
Botanic Gardens Melbourne; Landcare Research
FX We acknowledge support from Foundation for Research, Science and
Technology contract CO9309, Lottery Science, and the New Zealand-United
States Co-operative Science Programme. MAC acknowledges support from
National Science Foundation Grant BSR 9201421, and Commonwealth
Scientific and Industrial Research Organisation through ACIAR project
8736. Our sincere gratitude to staff of the National Herbarium of
Victoria (MEL), Western Australian Herbarium (PERTH), and Kew (K) for
help with collections, associated information and allowing DNA sampling
to take place. Thanks also to the Royal Botanic Gardens Melbourne and
Landcare Research for supporting TL in undertaking the Ross Beever
Memorial Fellowship (2012-2014), and thus finishing Ross' research on
this group. Thanks to reviewers for their comments.
NR 62
TC 6
Z9 6
U1 2
U2 10
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 1878-6146
EI 1878-6162
J9 FUNGAL BIOL-UK
JI Fungal Biol.
PD APR
PY 2015
VL 119
IS 4
BP 201
EP 228
DI 10.1016/j.funbio.2014.12.007
PG 28
WC Mycology
SC Mycology
GA CG0ZT
UT WOS:000353003500003
PM 25813509
ER
PT J
AU Melnikov, VM
Istok, MJ
Westbrook, JK
AF Melnikov, Valery M.
Istok, Michael J.
Westbrook, John K.
TI Asymmetric Radar Echo Patterns from Insects
SO JOURNAL OF ATMOSPHERIC AND OCEANIC TECHNOLOGY
LA English
DT Article
ID COLLECTIVE ORIENTATION; PLEXIPPUS LEPIDOPTERA; MONARCH BUTTERFLIES;
POLARIMETRIC RADAR; BOUNDARY-LAYER; DOPPLER RADAR; FREE-FLIGHT;
CLEAR-AIR; MECHANICS; MIGRATION
AB Radar echoes from insects, birds, and bats in the atmosphere exhibit both symmetry and asymmetry in polarimetric patterns. Symmetry refers to similar magnitudes of polarimetric variables at opposite azimuths, and asymmetry relegates to differences in these magnitudes. Asymmetry can be due to different species observed at different azimuths. It is shown in this study that when both polarized waves are transmitted simultaneously, asymmetric patterns can also be caused by insects of the same species that are oriented in the same direction. A model for scattering of simultaneously transmitted horizontally and vertically polarized radar waves by insects is developed. The model reproduces the main features of asymmetric patterns in differential reflectivity: the copolar correlation coefficient and the differential phase. The radar differential phase on transmit between horizontally and vertically polarized waves plays a critical role in the formations of the asymmetric patterns. The width-to-length ratios of insects' bodies and their orientation angles are retrieved from matching the model output with radar data.
C1 [Melnikov, Valery M.] Univ Oklahoma, CIMMS, Norman, OK 73072 USA.
[Melnikov, Valery M.] NOAA, Natl Severe Storms Lab, Norman, OK 73069 USA.
[Istok, Michael J.] US Natl Weather Serv, Silver Spring, MD USA.
[Westbrook, John K.] ARS, USDA, College Stn, TX USA.
RP Melnikov, VM (reprint author), Univ Oklahoma, CIMMS, 120 David L Boren Blvd,Room 4919, Norman, OK 73072 USA.
EM valery.melnikov@noaa.gov
FU NOAA's Office of Oceanic and Atmospheric Research under NOAA-University
of Oklahoma Cooperative Agreement, U.S. Department of Commerce
[NA11OAR4320072]
FX The authors thank the anonymous reviewers for their constructive
comments, which improved the presentation. Funding for this study was
provided in part by NOAA's Office of Oceanic and Atmospheric Research
under NOAA-University of Oklahoma Cooperative Agreement NA11OAR4320072,
U.S. Department of Commerce.
NR 35
TC 4
Z9 4
U1 1
U2 9
PU AMER METEOROLOGICAL SOC
PI BOSTON
PA 45 BEACON ST, BOSTON, MA 02108-3693 USA
SN 0739-0572
EI 1520-0426
J9 J ATMOS OCEAN TECH
JI J. Atmos. Ocean. Technol.
PD APR
PY 2015
VL 32
IS 4
BP 659
EP 674
DI 10.1175/JTECH-D-13-00247.1
PG 16
WC Engineering, Ocean; Meteorology & Atmospheric Sciences
SC Engineering; Meteorology & Atmospheric Sciences
GA CG0OT
UT WOS:000352966600002
ER
PT J
AU Bakota, EL
Winkler-Moser, JK
Berhow, MA
Eller, FJ
Vaughn, SF
AF Bakota, Erica L.
Winkler-Moser, Jill K.
Berhow, Mark A.
Eller, Fred J.
Vaughn, Steven F.
TI Antioxidant Activity and Sensory Evaluation of a Rosmarinic
Acid-Enriched Extract of Salvia officinalis
SO JOURNAL OF FOOD SCIENCE
LA English
DT Article
DE antioxidant; emulsion; SC-CO2 extraction; sensory evaluation; S;
officinalis
ID PERFORMANCE LIQUID-CHROMATOGRAPHY; CAFFEIC ACID; SAGE; COMPLEMENT;
LEAVES; HERBS
AB An extract of Salvia officinalis (garden sage) was prepared using supercritical carbon dioxide (SC-CO2) extraction, followed by hot water extraction. The resulting extract was enriched in polyphenols, including rosmarinic acid (RA), which has shown promising health benefits in animals. The extract contained RA at a concentration of 28.4 mg/g, representing a significant enrichment from the RA content in sage leaves. This extract was incorporated into oil-in-water emulsions as a source of lipid antioxidants and compared to emulsions containing pure rosmarinic acid. Both treatments were effective in suppressing lipid oxidation. The extract was evaluated by a trained sensory panel in a tea formulation. While the panel could discriminate among extract-treated and control samples, panelists demonstrated high acceptability of the sage extract in a tea.
Practical Application Rosmarinic acid (RA) is a compound that shows promising health benefits and is particularly high in some varieties of sage. In this work, we isolate an extract from garden sage that contains RA at 3 times the level at which is it found in sage leaves. This extract inhibited oxidation in a model food system and was well received by a sensory panel, making the extract attractive as a functional food ingredient.
C1 [Bakota, Erica L.; Winkler-Moser, Jill K.; Berhow, Mark A.; Eller, Fred J.; Vaughn, Steven F.] ARS, USDA, Natl Ctr Agr Utilizat Res, Funct Foods Res, Peoria, IL 61604 USA.
RP Bakota, EL (reprint author), ARS, USDA, Natl Ctr Agr Utilizat Res, Funct Foods Res, 1815 N Univ St, Peoria, IL 61604 USA.
EM Erica.Bakota@ars.usda.gov
FU United States Department of Agriculture
FX This work was supported by the United States Department of Agriculture.
The authors would like to thank Julie Anderson, Kathy Rennick, Jeff
Teel, Ray Holloway, Sandra Duval, and Patrick Schneider for their
excellent technical assistance.
NR 29
TC 3
Z9 3
U1 3
U2 27
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0022-1147
EI 1750-3841
J9 J FOOD SCI
JI J. Food Sci.
PD APR
PY 2015
VL 80
IS 4
BP C711
EP C717
DI 10.1111/1750-3841.12837
PG 7
WC Food Science & Technology
SC Food Science & Technology
GA CG1VH
UT WOS:000353062800008
PM 25808312
ER
PT J
AU Saldanha, L
Dwyer, J
Andrews, K
Betz, J
Harnly, J
Pehrsson, P
Rimmer, C
Savarala, S
AF Saldanha, Leila
Dwyer, Johanna
Andrews, Karen
Betz, Joseph
Harnly, James
Pehrsson, Pamela
Rimmer, Catherine
Savarala, Sushma
TI Feasibility of Including Green Tea Products for an Analytically Verified
Dietary Supplement Database
SO JOURNAL OF FOOD SCIENCE
LA English
DT Article
DE analytical methods; botanicals; databases; dietary supplements; green
tea; reference materials
ID SINGLE-LABORATORY VALIDATION; COCOA-BASED INGREDIENTS; EPICATECHIN
ENANTIOMERS; NIH OFFICE; CATECHINS; PROGRESS
AB The Dietary Supplement Ingredient Database (DSID) is a federally funded, publicly accessible dietary supplement database that currently contains analytically derived information on micronutrients in selected adult and children's multivitamin and mineral (MVM) supplements. Other constituents in dietary supplement products such as botanicals are also of interest and thus are being considered for inclusion in the DSID. Thirty-eight constituents, mainly botanicals were identified and prioritized by a federal interagency committee. Green tea was selected from this list as the botanical for expansion of the DSID. This article describes the process for prioritizing dietary ingredients in the DSID. It also discusses the criteria for inclusion of these ingredients, and the approach for selecting and testing products for the green tea pilot study.
Practical Application This article describes the available reference materials, analytical methods, and the program to qualify laboratories for analyzing the active constituents in green tea dietary supplement products, and how these criteria have been used to expand a dietary supplement composition database for green tea products. This information may be useful for product developers, chemists, and researchers involved in the analysis and formulation of products, and those making public policy decisions.
C1 [Saldanha, Leila; Dwyer, Johanna; Betz, Joseph] NIH, Off Dietary Supplements, Bethesda, MD 20892 USA.
[Andrews, Karen; Harnly, James; Pehrsson, Pamela; Savarala, Sushma] ARS, USDA, Beltsville, MD USA.
[Rimmer, Catherine] NIST, Div Chem Sci, Gaithersburg, MD 20899 USA.
RP Saldanha, L (reprint author), NIH, Off Dietary Supplements, Bldg 10, Bethesda, MD 20892 USA.
EM Saldanhl@mail.nih.gov
OI Dwyer, Johanna/0000-0002-0783-1769
FU Office of Dietary Supplements at the Natl. Inst. of Health
FX This study was funded by the Office of Dietary Supplements at the Natl.
Inst. of Health. We thank Julia Peterson, PhD, Adjunct Assistant
Professor at Tufts Univ.'s Friedman School of Nutrition Science and
Policy for her professional review of this article.
NR 25
TC 2
Z9 2
U1 1
U2 4
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0022-1147
EI 1750-3841
J9 J FOOD SCI
JI J. Food Sci.
PD APR
PY 2015
VL 80
IS 4
BP H883
EP H888
DI 10.1111/1750-3841.12838
PG 6
WC Food Science & Technology
SC Food Science & Technology
GA CG1VH
UT WOS:000353062800030
PM 25817236
ER
PT J
AU Bett-Garber, KL
Lea, JM
Watson, MA
Grimm, CC
Lloyd, SW
Beaulieu, JC
Stein-Chisholm, RE
Andrzejewski, BP
Marshall, DA
AF Bett-Garber, Karen L.
Lea, Jeanne M.
Watson, Michael A.
Grimm, Casey C.
Lloyd, Steven W.
Beaulieu, John C.
Stein-Chisholm, Rebecca E.
Andrzejewski, Brett P.
Marshall, Donna A.
TI Flavor of Fresh Blueberry Juice and the Comparison to Amount of Sugars,
Acids, Anthocyanidins, and Physicochemical Measurements
SO JOURNAL OF FOOD SCIENCE
LA English
DT Article
DE anthocyanidins; blueberry; flavor; organic acids; sugars
ID HIGHBUSH BLUEBERRIES; SENSORY QUALITY; FRUIT PULPS; CAPACITY; LEXICON
AB Six cultivars of southern highbush (SHB) and rabbiteye (RE) blueberry samples were harvested on 2 different dates. Each treatment combination was pressed 2 times for repeated measures. Fresh juice was characterized for 18 flavor/taste/feeling factor attributes by a descriptive flavor panel. Each sample was measured for sugars, acids, anthocyanidins, Folin-Ciocalteu, soluble solids (BRIX), titratable acidity (TA), and antioxidant capacity (ORAC(FL)). Flavors were correlated with the composition and physicochemical data. Blueberry flavor correlated with 3 parameters, and negatively correlated with 2. Strawberry correlated with oxalic acid and negatively correlated with sucrose and quinic acid. Sweet aroma correlated with oxalic and citric acid, but negatively correlated with sucrose, quinic, and total acids. Sweet taste correlated with 11 parameters, including the anthocyanidins; and negatively correlated with 3 parameters. Neither bitter nor astringent correlated with any of the antioxidant parameters, but both correlated with total acids. Sour correlated with total acids and TA, while negatively correlating with pH and BRIX:TA. Throat burn correlated with total acids and TA. Principal component analysis negatively related blueberry, sweet aroma, and sweet to sour, bitter, astringent, tongue tingle, and tongue numbness. The information in this component was related to pH, TA, and BRIX:TA ratio. Another principal component related the nonblueberry fruit flavors to BRIX. This PC, also divided the SHB berries from the RE. This work shows that the impact of juice composition on flavor is very complicated and that estimating flavor with physicochemical parameters is complicated by the composition of the juice.
Practical Application The impact of blueberry type, and harvest date variation on flavor are highlighted along with variation due to cultivar. Fresh blueberry juice flavor and compositional impact on flavor is useful to blueberry breeders, packers, and processors for understanding the flavor quality of the berries they are working with. It will help purchasers and processors make decisions on the quality of the blueberries they are acquiring for their products.
C1 [Bett-Garber, Karen L.; Lea, Jeanne M.; Watson, Michael A.; Grimm, Casey C.; Lloyd, Steven W.; Beaulieu, John C.] USDA ARS, New Orleans, LA 70124 USA.
[Stein-Chisholm, Rebecca E.] Act Organ, Lewisville, TX 75057 USA.
[Andrzejewski, Brett P.] USDA ARS, New Orleans, LA USA.
[Marshall, Donna A.] USDA ARS, Poplarville, MS 39470 USA.
RP Bett-Garber, KL (reprint author), USDA ARS, 1100 Robert E Lee Blvd, New Orleans, LA 70124 USA.
EM Karen.bett@ars.usda.gov
OI Beaulieu, John/0000-0001-7767-5901; Bett-Garber,
Karen/0000-0002-1453-2759
NR 18
TC 5
Z9 5
U1 5
U2 35
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0022-1147
EI 1750-3841
J9 J FOOD SCI
JI J. Food Sci.
PD APR
PY 2015
VL 80
IS 4
BP S818
EP S827
DI 10.1111/1750-3841.12821
PG 10
WC Food Science & Technology
SC Food Science & Technology
GA CG1VH
UT WOS:000353062800022
PM 25816898
ER
PT J
AU Lisle, TE
Buffington, JM
Wilcock, PR
Bunte, K
AF Lisle, Thomas E.
Buffington, John M.
Wilcock, Peter R.
Bunte, Kristin
TI CAN RAPID ASSESSMENT PROTOCOLS BE USED TO JUDGE SEDIMENT IMPAIRMENT IN
GRAVEL-BED STREAMS? A COMMENTARY
SO JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION
LA English
DT Review
DE rapid assessment; sediment impairment; contextual analysis; gravel-bed
channels
ID OREGON COAST RANGE; CHANNEL STABILITY THRESHOLDS; FINE SEDIMENT;
PACIFIC-NORTHWEST; SURFACE TEXTURES; HYDRAULIC ROUGHNESS; BEDLOAD
TRANSPORT; ALLUVIAL RIVERS; LOAD TRANSPORT; GRAIN-SIZE
AB Land management agencies commonly use rapid assessments to evaluate the impairment of gravel-bed streams by sediment inputs from anthropogenic sources. We question whether rapid assessment can be used to reliably judge sediment impairment at a site or in a region. Beyond the challenges of repeatable and accurate sampling, we argue that a single metric or protocol is unlikely to reveal causative relations because channel condition can result from multiple pathways, processes, and background controls. To address these concerns, a contextual analysis is needed to link affected resources, causal factors, and site history to reliably identify human influences. Contextual analysis is equivalent in principle to cumulative effects and watershed analyses and has a rich history, but has gradually been replaced by rapid assessment methods. Although the approaches differ, rapid assessment and contextual analysis are complementary and can be implemented in a two-tiered approach in which rapid assessment provides a coarse (first-tier) analysis to identify sites that deserve deeper contextual assessment (second-tier). Contextual analysis is particularly appropriate for site-specific studies that should be tailored to local conditions. A balance between rapid assessment and contextual analysis is needed to provide the most effective information for management decisions.
C1 [Lisle, Thomas E.] US Forest Serv, Pacific Southwest Res Stn, Arcata, CA 95521 USA.
[Buffington, John M.] US Forest Serv, Rocky Mt Res Stn, Boise, ID 83702 USA.
[Wilcock, Peter R.] Utah State Univ, Dept Watershed Sci, Logan, UT 84322 USA.
[Bunte, Kristin] Colorado State Univ, Dept Civil & Environm Engn, Ft Collins, CO 80523 USA.
RP Lisle, TE (reprint author), US Forest Serv, Pacific Southwest Res Stn, 1700 Bayview Dr, Arcata, CA 95521 USA.
EM thomas.lisle@gmail.com
FU U.S. Forest Service Stream Systems Technology Center
FX John Potyondy encouraged the authors to write this manuscript and
provided constructive comments for an earlier draft. Additional comments
from three anonymous reviewers further improved the manuscript. Funding
comes, in part, from the U.S. Forest Service Stream Systems Technology
Center.
NR 106
TC 1
Z9 1
U1 2
U2 10
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1093-474X
EI 1752-1688
J9 J AM WATER RESOUR AS
JI J. Am. Water Resour. Assoc.
PD APR
PY 2015
VL 51
IS 2
BP 373
EP 387
DI 10.1111/jawr.12255
PG 15
WC Engineering, Environmental; Geosciences, Multidisciplinary; Water
Resources
SC Engineering; Geology; Water Resources
GA CF8EX
UT WOS:000352789900007
ER
PT J
AU Kwan, H
Swanson, S
AF Kwan, Hilda
Swanson, Sherman
TI "Prediction of Annual Streambank Erosion for Sequoia National Forest,
California"
SO JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION
LA English
DT Letter
C1 [Kwan, Hilda] USDA, Mendocino Natl Forest, Upper Lake, CA 95485 USA.
[Kwan, Hilda] Sequoia Natl Forest, Porterville, CA 93257 USA.
[Swanson, Sherman] Univ Nevada, Nevada Agr Expt Stn, Reno, NV 89557 USA.
RP Kwan, H (reprint author), USDA, Mendocino Natl Forest, 10025 Elk Mt Rd, Upper Lake, CA 95485 USA.
EM hkwan@fs.fed.us
NR 0
TC 0
Z9 0
U1 3
U2 3
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1093-474X
EI 1752-1688
J9 J AM WATER RESOUR AS
JI J. Am. Water Resour. Assoc.
PD APR
PY 2015
VL 51
IS 2
BP 568
EP 568
DI 10.1111/jawr.12257
PG 1
WC Engineering, Environmental; Geosciences, Multidisciplinary; Water
Resources
SC Engineering; Geology; Water Resources
GA CF8EX
UT WOS:000352789900019
ER
PT J
AU Vikoren, T
Klevar, S
Li, H
Hauge, AG
AF Vikoren, Turid
Klevar, Siv
Li, Hong
Hauge, Anna Germundsson
TI A Geographic Cluster of Malignant Catarrhal Fever in Moose (Alces alces)
in Norway
SO JOURNAL OF WILDLIFE DISEASES
LA English
DT Article
DE Alces alces; malignant catarrhal fever virus; MCF; moose; PCR; red deer;
serology; wildlife
ID OVINE HERPESVIRUS-2; VIRUSES; ANTIBODY; DEER; PREVALENCE; WILDLIFE;
CERVIDS; PCR
AB Three cases of lethal sheep-associated malignant catarrhal fever (SA-MCF) in free-ranging moose (Aloes aloes) were diagnosed in Lesja, Norway, December 2008 February 2010. The diagnosis was based on PCR identification of ovine herpesvirus 2 (OvHV-2) DNA (n=3) and typical histopathologic lesions (n=1). To study the possibility of subclinical or latent MCF virus (MCFV) infection in this moose population and in red deer (Germs elaphus), we examined clinically normal animals sampled during hunting in Lesja 2010 by serology and PCR. Sera from 63 moose and 33 red deer were tested for antibodies against MCFV by competitive-inhibition enzyme-linked immunosorbent assay. To test for MCFVs, a consensus PCR for herpesviral DNA was run on spleen samples from 23 moose and 17 red deer. All samples were antibody and PCR negative. Thus, there is no evidence of previous exposure, subclinical infection, or latent infection in this sample. This seasonal cluster of SA-MCF cases (2008-10) may be attributable to exposure of moose to lambs when OvHV-2 shedding is presumed to be maximal, compounded by an unusual extended grazing period by sheep in the autumn.
C1 [Vikoren, Turid; Klevar, Siv; Hauge, Anna Germundsson] Norwegian Vet Inst, N-0106 Oslo, Norway.
[Li, Hong] Washington State Univ, Anim Dis Res Unit, USDA, ARS, Pullman, WA 99164 USA.
[Li, Hong] Washington State Univ, Dept Vet Microbiol & Pathol, Pullman, WA 99164 USA.
RP Vikoren, T (reprint author), Norwegian Vet Inst, POB 750 Sentrum, N-0106 Oslo, Norway.
EM turid.vikoren@vetinst.no
FU Directorate for Nature Management
FX Financial support was provided by the Directorate for Nature Management.
We thank Jon Norstebo, local hunters, and wildlife management
authorities for submission of specimens, Kjell Handeland for the
diagnostic work on one moose, and Marthe Opland, Kaia Dybdahl, and Wanda
Gajowniczek for technical assistance Thanks to Hans Petter Schwencke,
Norwegian Food Safety Authority, for providing sheep management data
from Lesja.
NR 18
TC 1
Z9 1
U1 1
U2 8
PU WILDLIFE DISEASE ASSOC, INC
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0090-3558
EI 1943-3700
J9 J WILDLIFE DIS
JI J. Wildl. Dis.
PD APR
PY 2015
VL 51
IS 2
BP 471
EP 474
DI 10.7589/2014-04-097
PG 4
WC Veterinary Sciences
SC Veterinary Sciences
GA CF9XT
UT WOS:000352921800018
PM 25574807
ER
PT J
AU Ahlers, AA
Mitchell, MA
Dubey, JP
Schooley, RL
Heske, EJ
AF Ahlers, Adam A.
Mitchell, Mark A.
Dubey, Jitender P.
Schooley, Robert L.
Heske, Edward J.
TI Risk Factors for Toxoplasma gondii Exposure in Semiaquatic Mammals in a
Freshwater Ecosystem
SO JOURNAL OF WILDLIFE DISEASES
LA English
DT Article
DE American mink; muskrat; Toxoplasma gondii; urbanization; watershed
health; wildlife diseases
ID ONDATRA-ZIBETHICUS; WILD MAMMALS; SEA OTTERS; PREVALENCE; INFECTION;
TRANSMISSION; ANTIBODIES; ESTUARINE; OOCYSTS; RIVER
AB We assessed risk factors for Toxoplasma gondii exposure in semiaquatic mammals in east-central Illinois, US. This agricultural region has extensive drainage systems that could potentially transport T. gondii oocysts into the watershed. We used muskrats (Ondatra zibethicus) and American mink (Neovison vison) as sentinels of watershed contamination. We predicted individuals from larger subwatersheds would more likely be antibody-positive for T. gondii, as they were exposed to drainage from larger areas. We also evaluated amount of urban land cover within the subwatershed, proximity to farmsteads, and age of individuals in competing models of T. gondii infection. Antibodies to T. gondii were assayed in animal sera by modified agglutination tests (titer 25 or higher) and detected in 18 (60%) of 30 muskrats and 20 (77%) of 26 mink. Infection rates were >= 1.7 times higher than those typical for mammals in upland habitats in this region. Subwatershed size and age class were important predictors of T. gondii infection in muskrats (R-2=0.35). Models incorporating urban land cover and proximity to farmsteads had little support. None of our models of antibody prevalence in mink were well supported, possibly because mink are less strictly associated with riparian habitats. Because similar to 91% of our study area is devoted to agricultural production and urbanization, transport of T. gondii into freshwater ecosystems is likely facilitated by modified drainage practices common in these areas.
C1 [Ahlers, Adam A.; Schooley, Robert L.] Univ Illinois, Dept Nat Resources & Environm Sci, Urbana, IL 61801 USA.
[Ahlers, Adam A.; Heske, Edward J.] Prairie Res Inst, Illinois Nat Hist Survey, Champaign, IL 61820 USA.
[Mitchell, Mark A.] Univ Illinois, Coll Vet Med, Urbana, IL 61820 USA.
[Dubey, Jitender P.] ARS, Anim Parasit Dis Lab, Beltsville Agr Res Ctr, USDA, Beltsville, MD 20705 USA.
RP Ahlers, AA (reprint author), Univ Illinois, Dept Nat Resources & Environm Sci, 1102 S Goodwin Ave, Urbana, IL 61801 USA.
EM aahlers2@illinois.edu
FU Illinois Department of Natural Resources; Illinois Department of
Transportation; Illinois Trappers Association
FX This work was supported by the Illinois Department of Natural Resources,
Illinois Department of Transportation, and the Illinois Trappers
Association. We thank G. Batzli, M. Samuel, and two anonymous reviewers
for helpful comments.
NR 20
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Z9 6
U1 2
U2 28
PU WILDLIFE DISEASE ASSOC, INC
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0090-3558
EI 1943-3700
J9 J WILDLIFE DIS
JI J. Wildl. Dis.
PD APR
PY 2015
VL 51
IS 2
BP 488
EP 492
DI 10.7589/2014-03-071
PG 5
WC Veterinary Sciences
SC Veterinary Sciences
GA CF9XT
UT WOS:000352921800022
PM 25574808
ER
PT J
AU Kistler, WM
Stallknecht, DE
Lebarbenchon, C
Pedersen, K
Marks, DR
Mickley, R
DeLiberto, TJ
Yabsley, MJ
AF Kistler, Whitney M.
Stallknecht, David E.
Lebarbenchon, Camille
Pedersen, Kerri
Marks, David R.
Mickley, Randy
DeLiberto, Thomas J.
Yabsley, Michael J.
TI Influenza A Virus H5-specific Antibodies in Mute Swans (Cygnus olor) in
the USA
SO JOURNAL OF WILDLIFE DISEASES
LA English
DT Article
DE Cygnus olor; H5-specific ELISA; hemagglutination inhibition; Mute Swan;
serology
ID LINKED-IMMUNOSORBENT-ASSAY; SERUM ANTIBODIES; CANADA GEESE; H5N1;
SUBTYPE; SURVEILLANCE; INFECTION; MALLARDS
AB The use of serologic assays for influenza A virus (IAV) surveillance in wild birds has increased because of the availability of commercial enzyme-linked immunosorbent assays (ELISAs). Recently, an H5-specific blocking ELISA (bELISA) was shown to reliably detect H5-specific antibodies to low- and high-pathogenic H5 viruses in experimentally infected waterfowl. Mute Swans (Cygnus olor) were frequently associated with highly pathogenic H5N1 outbreaks in Europe and may have a similar role if highly pathogenic H5N1 is introduced into North America. We measured the prevalence of antibodies to the nucleoprotein and H5 protein in Mute Swans using three serologic assays. We collected 340 serum samples from Mute Swans in Michigan, New Jersey, New York, and Rhode Island, US. We detected antibodies to the IAV nucleoprotein in 66.2% (225/340) of the samples. We detected H5-specific antibodies in 62.9% (2141340) and 18.8% (64/340) using a modified H5 bELISA protocol and hemagglutination inhibition (HI) assay, respectively. The modified H5 bELISA protocol detected significantly more positive samples than did the manufacturer's protocol. We also tested 46 samples using virus neutralization. Neutralization results had high agreement with the modified H5 bELISA protocol and detected a higher prevalence than did the HI assay. These results indicate that North American Mute Swans have high nucleoprotein and H5 antibody prevalences.
C1 [Kistler, Whitney M.; Yabsley, Michael J.] Univ Georgia, Daniel B Warnell Sch Forestry & Nat Resources, Athens, GA 30602 USA.
[Kistler, Whitney M.; Stallknecht, David E.; Yabsley, Michael J.] Univ Georgia, Southeastern Cooperat Wildlife Dis Study, Coll Vet Med, Athens, GA 30602 USA.
[Lebarbenchon, Camille] Univ Reunion Isl, St Denis 97715, Reunion.
[Pedersen, Kerri] Anim & Plant Hlth Inspect Serv, Wildlife Serv, USDA, Ft Collins, CO 80521 USA.
[Marks, David R.] Anim & Plant Hlth Inspect Serv, Wildlife Serv, USDA, Okemos, MI 48864 USA.
[Mickley, Randy] Anim & Plant Hlth Inspect Serv, Wildlife Serv, USDA, Sutton, MA 01590 USA.
[DeLiberto, Thomas J.] Anim & Plant Hlth Inspect Serv, Natl Wildlife Res Ctr, Wildlife Serv, USDA, Ft Collins, CO 80521 USA.
RP Kistler, WM (reprint author), Univ Georgia, Daniel B Warnell Sch Forestry & Nat Resources, 180 E Green St, Athens, GA 30602 USA.
EM whitney.kistler@gmail.com
FU Department of Homeland Security, Center of Excellence for Emerging and
Zoonotic Animal Diseases [2010-ST-061-AG0001-02]; National Institute of
Allergy and Infectious Diseases, National Institutes of Health (NIH),
Department of Health and Human Services [HHSN266200700007C]
FX Funding was provided by the Department of Homeland Security, Center of
Excellence for Emerging and Zoonotic Animal Diseases cooperative
agreement 2010-ST-061-AG0001-02 and contract HHSN266200700007C from the
National Institute of Allergy and Infectious Diseases, National
Institutes of Health (NIH), Department of Health and Human Services. Its
contents are solely the responsibility of the authors and do not
necessarily represent the official views of the NIH.
NR 20
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U1 1
U2 7
PU WILDLIFE DISEASE ASSOC, INC
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0090-3558
EI 1943-3700
J9 J WILDLIFE DIS
JI J. Wildl. Dis.
PD APR
PY 2015
VL 51
IS 2
BP 523
EP 526
DI 10.7589/2014-08-192
PG 4
WC Veterinary Sciences
SC Veterinary Sciences
GA CF9XT
UT WOS:000352921800029
PM 25647600
ER
PT J
AU Garcia-Vazquez, Z
Ortega, JA
Cantu-Covarruvias, A
Mosqueda, J
Hewitt, DG
DeYoung, RW
Campbell, TA
Bryant, FC
AF Garcia-Vazquez, Zeferino
Ortega-S, J. Alfonso
Cantu-Covarruvias, Antonio
Mosqueda, Juan
Hewitt, David G.
DeYoung, Randall W.
Campbell, Tyler A.
Bryant, Fred C.
TI Tick-borne Diseases in Syntopic Populations of Fallow Deer (Dama dama)
and Axis Deer (Axis axis) in Northern Mexico
SO JOURNAL OF WILDLIFE DISEASES
LA English
DT Article
ID WHITE-TAILED DEER; BABESIA-BOVIS; SYMPATRIC POPULATIONS; HEALTH-STATUS;
SOUTH TEXAS; BIGEMINA; PARASITES; EPIZOOTIOLOGY; CULTIVATION
AB We harvested 21 fallow deer (Dama dama) and 17 axis deer (Axis axis) in northern Mexico. Two fallow deer were positive for Babesiabigemina and one for Babesiabovis. Amplicons had the expected 170 and 291 base pairs and were identical to B. bigemina (S45366) and B. bovis (M38218), respectively.
C1 [Garcia-Vazquez, Zeferino] Inst Nacl Invest Forestales Agr & Pecuarias, Ctr Nacl Invest Disciplinaria Parasitol Vet CENID, Jiutepec 62550, Morelos, Mexico.
[Ortega-S, J. Alfonso; Hewitt, David G.; DeYoung, Randall W.; Bryant, Fred C.] Texas A&M Univ, Caesar Kleberg Wildlife Res Inst, Kingsville, TX 78363 USA.
[Cantu-Covarruvias, Antonio] INIFAP, Sitio Expt Aldama, Aldama 89670, Tamaulipas, Mexico.
[Mosqueda, Juan] Univ Autonoma Queretaro, Fac Ciencias Nat, Campus Juriquilla 76230, Mexico.
[Campbell, Tyler A.] Wildlife Serv, USDA, Anim & Plant Hlth Inspect Serv, Natl Wildlife Res Ctr Florida Field Stn, Gainesville, FL 32641 USA.
RP Ortega, JA (reprint author), Texas A&M Univ, Caesar Kleberg Wildlife Res Inst, MSC 218,700 Univ Blvd, Kingsville, TX 78363 USA.
EM poncho.ortega@tamuk.edu
FU US Department of Agriculture Animal and Plant Health Inspection Service;
Caesar Kleberg Wildlife Research Institute; Juan Romero; M.V.Z. Hector
Hugo Jaramillo
FX We acknowledge the US Department of Agriculture Animal and Plant Health
Inspection Service, the Caesar Kleberg Wildlife Research Institute, Juan
Romero, and M.V.Z. Hector Hugo Jaramillo for the provided funding and
the Centro Nacional de Parasitologia Veterinaria (CENID-PA-VET) from
Institut Nacional de Investigaciones Forestales, Agricolas, y Pecuarias
(INIFAP) for their contribution to the laboratory analyses. Our study
was performed under a scientific collection permit issued by the State
of Tamaulipas, Comision Estatal para la Conservacion y el
Aprovechamiento de la Vida Silvestre. This is Caesar Kleberg Wildlife
Research Institute publication 14-110.
NR 15
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U1 4
U2 9
PU WILDLIFE DISEASE ASSOC, INC
PI LAWRENCE
PA 810 EAST 10TH ST, LAWRENCE, KS 66044-8897 USA
SN 0090-3558
EI 1943-3700
J9 J WILDLIFE DIS
JI J. Wildl. Dis.
PD APR
PY 2015
VL 51
IS 2
BP 527
EP 529
DI 10.7589/2014-07-183
PG 3
WC Veterinary Sciences
SC Veterinary Sciences
GA CF9XT
UT WOS:000352921800030
PM 25647599
ER
PT J
AU Brose, PH
Guyette, RP
Marschall, JM
Stambaugh, MC
AF Brose, Patrick H.
Guyette, Richard P.
Marschall, Joseph M.
Stambaugh, Michael C.
TI Fire History Reflects Human History in the Pine Creek Gorge of
North-central Pennsylvania
SO NATURAL AREAS JOURNAL
LA English
DT Article
DE dendrochronology; European settlement; fire scars; Iroquois; Pinus
resinosa
ID FOREST; RECRUITMENT; LANDSCAPE; REGIMES; USA
AB Fire history studies are important tools for understanding past fire regimes and the roles humans played in those regimes. Beginning in 2010, we conducted a fire history study in the Pine Creek Gorge area of north-central Pennsylvania to ascertain the number of fires and fire-free intervals, their variability through time, and the role of human influences. We collected 93 cross sections from fire-scarred red pine (Pinus resinosa) snags, stumps, and living trees at three separate sites along the western rim of Pine Creek Gorge. From these, we found 79 fire years and 11 multidecadal fire-free intervals between 1600 and 2010. The three fire histories were quite synchronous; their fire years and fire-free periods mirrored one another despite being 12 to 14 km apart. Before 1791, fires were rare, suggesting a low population of American Indians and (or) little woodland burning by the tribes. A prolonged fire-free interval from 1650 to 1735 coincided with the Beaver Wars and the introduction of European diseases. Another fire-free period coincided with the American Revolutionary War. After that, fires became quite common with nearly all of them occurring within the next 125 years while Pine Creek Gorge was intensively logged. Since logging ended and fire control started in the 1910s, fires have been virtually absent from the three sites. Based on the fire and human histories, we conclude that human activities and culture are the driving forces behind the fire regimes of Pine Creek Gorge.
C1 [Brose, Patrick H.] USDA, Forest Serv, No Res Stn, Irvine, PA 16329 USA.
[Guyette, Richard P.; Marschall, Joseph M.; Stambaugh, Michael C.] Univ Missouri, Sch Nat Resources, Columbia, MO 65201 USA.
RP Brose, PH (reprint author), USDA, Forest Serv, No Res Stn, 335 Natl Forge Rd, Irvine, PA 16329 USA.
EM pbrose@fs.fed.us
RI Clark, Stacy/I-3410-2015
FU Joint Fire Science Program
FX We thank the Pennsylvania Bureau of Forestry, especially the staffs of
the Tiadaghton and Tioga State Forests, for their permission to conduct
this research on their lands, help with locating potential sites, and
access to the sites. We also thank Eric Baxter and Greg Sanford of the
USDA Forest Service, Northern Research Station, for all their hard work
in collecting the samples. We are indebted to the staffs of the Lycoming
and Tioga County Historical Societies for access to numerous historical
documents and rare books. Funding for this project was provided by the
Joint Fire Science Program.
NR 47
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U1 4
U2 13
PU NATURAL AREAS ASSOC
PI ROCKFORD
PA 320 SOUTH THIRD ST, ROCKFORD, IL 61104 USA
SN 0885-8608
EI 2162-4399
J9 NAT AREA J
JI Nat. Areas J.
PD APR
PY 2015
VL 35
IS 2
BP 214
EP 223
PG 10
WC Ecology; Forestry
SC Environmental Sciences & Ecology; Forestry
GA CG3YD
UT WOS:000353214800002
ER
PT J
AU Mazzola, M
Hewavitharana, SS
Strauss, SL
AF Mazzola, Mark
Hewavitharana, Shashika S.
Strauss, Sarah L.
TI Brassica Seed Meal Soil Amendments Transform the Rhizosphere Microbiome
and Improve Apple Production Through Resistance to Pathogen
Reinfestation
SO PHYTOPATHOLOGY
LA English
DT Article
DE microbial diversity; soil resistance; suppressive soil
ID REPLANT DISEASE; PRATYLENCHUS-PENETRANS; PSEUDOMONAS-CEPACIA; HERBICIDAL
ACTIVITY; FUNGAL COMMUNITIES; BIOLOGICAL-CONTROL; RESIDENT BACTERIA;
PHENOLIC-ACIDS; GEN. NOV.; PYTHIUM
AB Brassicaceae seed meal (SM) formulations were compared with preplant 1,3-dichloropropene/chloropicrin (Telone-C17) soil fumigation for the ability to control apple replant disease and to suppress pathogen or parasite reinfestation of organic orchard soils at two sites in Washington State. Preplant soil fumigation and an SM formulation consisting of either Brassica juncea-Sinapis alba or B. juncea-B. napus each provided similar levels of disease control during the initial growing season. Although tree growth was similar in fumigated and SM-amended soil during the initial growing season, tree performance in terms of growth and yield was commonly superior in B. juncea-S. alba SM-amended soil relative to that in fumigated soil at the end of four growing seasons. SM-amended soils were resistant to reinfestation by Pratylenchus penetrans and Pythium spp. relative to fumigated soils and corresponded with enhanced tree performance. Phytotoxic symptoms were observed in response to SM amendment at one of two orchard sites, were dependent upon season of application, and occurred in an SM formulationspecific manner. After 2 years, the rhizosphere microbiome in fumigated soils had reverted to one that was indistinguishable from the no-treatment control. In contrast, rhizosphere soils from the SM treatment possessed unique bacterial and fungal profiles, including specific microbial elements previously associated with suppression of plant-pathogenic fungi, oomycetes, and nematodes. Overall diversity of the microbiome was reduced in the SM treatment rhizosphere, suggesting that enhanced " biodiversity" was not instrumental in achieving system resistance or pathogen suppression.
C1 [Mazzola, Mark; Hewavitharana, Shashika S.; Strauss, Sarah L.] USDA ARS, Tree Fruit Res Lab, Wenatchee, WA 98801 USA.
RP Mazzola, M (reprint author), USDA ARS, Tree Fruit Res Lab, 1104 N Western Ave, Wenatchee, WA 98801 USA.
EM mark.mazzola@ars.usda.gov
RI Strauss, Sarah/I-5141-2016
OI Strauss, Sarah/0000-0001-7494-5320
FU USDA NIFA Organic Agriculture Research and Extension Initiative Grants
Program
FX This work was funded, in part, through a grant to M. Mazzola from the
USDA NIFA Organic Agriculture Research and Extension Initiative Grants
Program. We thank C. L. Reardon and T. C. Paulitz for critical review of
the manuscript.
NR 63
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U1 9
U2 63
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
BP 460
EP 469
DI 10.1094/PHYTO-09-14-0247-R
PG 10
WC Plant Sciences
SC Plant Sciences
GA CG0SS
UT WOS:000352979600007
PM 25412009
ER
PT J
AU Basnet, BR
Singh, S
Lopez-Vera, EE
Huerta-Espino, J
Bhavani, S
Jin, Y
Rouse, MN
Singh, RP
AF Basnet, Bhoja R.
Singh, Sukhwinder
Lopez-Vera, Eric E.
Huerta-Espino, Julio
Bhavani, Sridhar
Jin, Yue
Rouse, Matthew N.
Singh, Ravi P.
TI Molecular Mapping and Validation of SrND643: A New Wheat Gene for
Resistance to the Stem Rust Pathogen Ug99 Race Group
SO PHYTOPATHOLOGY
LA English
DT Article
ID ADULT-PLANT RESISTANCE; F-SP TRITICI; SEEDLING RESISTANCE; YELLOW RUST;
LEAF RUST; QUAIU 3; CULTIVARS; TTKS; IDENTIFICATION; VIRULENCE
AB This study reports the identification of a new gene conferring resistance to the Ug99 lineage of races of Puccinia graminis f. sp. tritici in wheat (Triticum aestivum L.). Because the virulent races of stem rust pathogen continue to pose a serious threat in global wheat production, identification and molecular characterization of new resistance genes remains of utmost important to enhance resistance diversity and durability in wheat germplasm. Advanced wheat breeding line 'ND643/2* Weebilll' carries a stem rust resistance gene, temporarily designated as SrND643, effective against the Ug99 group of P. graminis f. sp. tritici races at both seedling and adult growth stages. This study was conducted to map the chromosomal location of SrND643 and identify closely linked molecular markers to allow its selection in breeding populations. In total, 123 recombinant inbred lines, developed by crossing ND643/2* Weebilll with susceptible line ' Cacuke', were evaluated for stem rust response in field nurseries at Njoro, Kenya, during two growing seasons in 2010, and were genotyped with DNA markers, including Diversity Arrays Technology, simple sequence repeats (SSR), and single-nucleotide polymorphisms. Linkage mapping tagged SrND643 at the distal end of chromosome 4AL, showing close association with SSR markers Xgwm350 (0.5 centimorgans [cM]), Xwmc219 (4.1 cM), and Xwmc776 (2.9 cM). The race specificity of SrND643 is different from that of Sr7a and Sr7b, indicating that the resistance is conferred by a gene at a new locus or by a new allele of Sr7. The flanking markers Xgwm350 and Xwmc219 were predictive of the presence of SrND643 in advanced germplasm, thus validating the map location and their use in marker-assisted selection.
C1 [Basnet, Bhoja R.; Singh, Sukhwinder; Lopez-Vera, Eric E.; Singh, Ravi P.] Int Maize & Wheat Improvement Ctr CIMMYT, Mexico City 06600, DF, Mexico.
[Lopez-Vera, Eric E.] IPN, CINVESTAV, Mexico City 07360, DF, Mexico.
[Huerta-Espino, Julio] INIFAP CEVAMEX, Chapingo 56230, Edo Mexico, Mexico.
[Bhavani, Sridhar] CIMMYT, Nairobi, Kenya.
[Jin, Yue; Rouse, Matthew N.] USDA ARS, Cereal Dis Lab, St Paul, MN 55108 USA.
RP Singh, RP (reprint author), Int Maize & Wheat Improvement Ctr CIMMYT, Mexico City 06600, DF, Mexico.
EM R.Singh@cgiar.org
RI Rouse, Matthew/G-5474-2011;
OI bhavani, sridhar/0000-0002-4091-2608
FU Bill & Melinda Gates Foundation
FX We thank the Durable Rust Resistance in Wheat project, supported by the
Bill & Melinda Gates Foundation and managed by Cornell University; R.
McIntosh for technical editing; and E. Quilligan for language editing of
this manuscript.
NR 47
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U1 1
U2 5
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
BP 470
EP 476
DI 10.1094/PHYTO-01-14-0016-R
PG 7
WC Plant Sciences
SC Plant Sciences
GA CG0SS
UT WOS:000352979600008
PM 25870921
ER
PT J
AU Talajoor, M
Jin, Y
Wan, AM
Chen, XM
Bhavani, S
Tabe, L
Lagudah, E
Huang, L
AF Talajoor, Mina
Jin, Yue
Wan, Anmin
Chen, Xianming
Bhavani, Sridhar
Tabe, Linda
Lagudah, Evans
Huang, Li
TI Specificity of a Rust Resistance Suppressor on 7DL in the Spring Wheat
Cultivar Canthatch
SO PHYTOPATHOLOGY
LA English
DT Article
ID POWDERY MILDEW RESISTANCE; HEXAPLOID WHEAT; STEM-RUST; LEAF RUST; GENE
PM8; CHROMOSOME 7DL; STRIPE RUST; T-TAUSCHII; GENOME; RYE
AB The spring wheat 'Canthatch' has been shown to suppress stem rust resistance genes in the background due to the presence of a suppressor gene located on the long arm of chromosome 7D. However, it is unclear whether the suppressor also suppresses resistance genes against leaf rust and stripe rust. In this study, we investigated the specificity of the resistance suppression. To determine whether the suppression is genome origin specific, chromosome location specific, or rust species or race specific, we introduced 11 known rust resistance genes into the Canthatch background, including resistance to leaf, stripe, or stem rusts, originating from A, B, or D genomes and located on different chromosome homologous groups. Fl plants of each cross were tested with the corresponding rust race, and the infection types were scored and compared with the parents. Our results show that the Canthatch 7DL suppressor only suppressed stem rust resistance genes derived from either the A or B genome, and the pattern of the suppression is gene specific and independent of chromosomal location.
C1 [Talajoor, Mina; Huang, Li] Montana State Univ, Dept Plant Sci & Plant Pathol, Bozeman, MT 59717 USA.
[Jin, Yue] USDA ARS, Cereal Dis Lab, St Paul, MN 55108 USA.
[Wan, Anmin; Chen, Xianming] USDA ARS, Wheat Genet Physiol Qual & Dis Res Unit, Pullman, WA 99164 USA.
[Bhavani, Sridhar] Int Maize & Wheat Improvement Ctr CIMMYT, Nairobi 00621, Kenya.
[Tabe, Linda; Lagudah, Evans] CSIRO Plant Ind, Canberra, ACT 2601, Australia.
RP Huang, L (reprint author), Montana State Univ, Dept Plant Sci & Plant Pathol, Bozeman, MT 59717 USA.
EM lhuang@montana.edu
OI bhavani, sridhar/0000-0002-4091-2608
FU NSF BREAD program [IOS-0965429]
FX This study was supported by the NSF BREAD program (IOS-0965429).
NR 23
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U1 0
U2 15
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
BP 477
EP 481
DI 10.1094/PHYTO-09-14-0261-R
PG 5
WC Plant Sciences
SC Plant Sciences
GA CG0SS
UT WOS:000352979600009
PM 25870922
ER
PT J
AU Zhong, SB
Ali, S
Leng, YQ
Wang, R
Garvin, DF
AF Zhong, Shaobin
Ali, Shaukat
Leng, Yueqiang
Wang, Rui
Garvin, David F.
TI Brachypodium distachyon-Cochliobolus sativus Pathosystem is a New Model
for Studying Plant-Fungal Interactions in Cereal Crops
SO PHYTOPATHOLOGY
LA English
DT Article
ID HOST-SELECTIVE TOXINS; SPOT BLOTCH; BIPOLARIS-SOROKINIANA;
PUCCINIA-BRACHYPODII; GRAIN-YIELD; BARLEY; GRASS; RESISTANCE; INFECTION;
DIVERSITY
AB Cochliobolus sativus (anamorph: Bipolaris sorokiniana) causes spot blotch, common root rot, and kernel blight or black point in barley and wheat. However, little is known about the molecular mechanisms underlying the pathogenicity of C. sativus or the molecular basis of resistance and susceptibility in the hosts. This study aims to establish the model grass Brachypodium distachyon as a new model for studying plant-fungus interactions in cereal crops. Six B. distachyon lines were inoculated with five C. sativus isolates. The results indicated that all six B. distachyon lines were infected by the C. sativus isolates, with their levels of resistance varying depending on the fungal isolates used. Responses ranging from hypersensitive response-mediated resistance to complete susceptibility were observed in a large collection of B. distachyon (2n = 2x = 10) and B. hybridum (2n = 4x = 30) accessions inoculated with four of the C. sativus isolates. Evaluation of an F2 population derived from the cross between two of the B. distachyon lines, Bdl-1 and Bd3-1, with isolate Cs07-47-1 showed quantitative and transgressive segregation for resistance to C. sativus, suggesting that the resistance may be governed by quantitative trait loci from both parents. The availability of whole-genome sequences of both the host (B. distachyon) and the pathogen (C. sativus) makes this pathosystem an attractive model for studying this important disease of cereal crops.
C1 [Zhong, Shaobin; Ali, Shaukat; Leng, Yueqiang; Wang, Rui] N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58108 USA.
[Garvin, David F.] Univ Minnesota, USDA ARS, Plant Sci Res Unit, St Paul, MN 55108 USA.
RP Zhong, SB (reprint author), N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58108 USA.
EM shaobin.zhong@ndsu.edu
FU Triticeae-CAP project from the USDA National Institute of Food and
Agriculture [2011-68002-30029]
FX This study was supported by the Triticeae-CAP project (2011-68002-30029)
from the USDA National Institute of Food and Agriculture. We thank J. Hu
at the USDA-ARS Western Regional Plant Introduction and Research
Station, Pullman, WA, for providing B. distachyon accessions; X. Cai in
the Department of Plant Sciences at North Dakota State University for
help with microscopy; and K. D. Purl, J. Mullins, M. Zhao, Z. Sun, and
Q. Li for assistance in planting and fungal inoculation.
NR 45
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PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
BP 482
EP 489
DI 10.1094/PHYTO-08-14-0214-R
PG 8
WC Plant Sciences
SC Plant Sciences
GA CG0SS
UT WOS:000352979600010
PM 25423068
ER
PT J
AU Tamang, P
Neupane, A
Mamidi, S
Friesen, T
Brueggeman, R
AF Tamang, Prabin
Neupane, Anjan
Mamidi, Sujan
Friesen, Timothy
Brueggeman, Robert
TI Association Mapping of Seedling Resistance to Spot Form Net Blotch in a
Worldwide Collection of Barley
SO PHYTOPATHOLOGY
LA English
DT Article
ID TERES-F-MACULATA; GENOME-WIDE ASSOCIATION; EFFECTOR-TRIGGERED
SUSCEPTIBILITY; IRON-DEFICIENCY CHLOROSIS; SIMPLE SEQUENCE REPEATS; HEAD
BLIGHT RESISTANCE; PYRENOPHORA-TERES; PATHOGENIC VARIATION; LINKAGE
DISEQUILIBRIUM; STAGONOSPORA-NODORUM
AB Spot form net blotch (SFNB), caused by the necrotrophic fungal pathogen Pyrenophora teres f. maculata, is an important foliar disease of barley in major production regions around the world. Deployment of adequate host resistance is challenging because the virulence of P. teres f. maculata is highly variable and characterized minor-effect resistances are typically ineffective against the diverse pathogen populations. A world barley core collection consisting of 2,062 barley accessions of diverse origin and genotype were phenotyped at the seedling stage with four P. teres f. maculata isolates collected from the United States (FGO), New Zealand (NZKF2), Australia (SG1), and Denmark (DEN 2.6). Of the 2,062 barley accessions phenotyped, 1,480 were genotyped with the Illumina barley iSelect chip and passed the quality controls with 5,954 polymorphic markers used for further association mapping analysis. Genome-wide association mapping was utilized to identify and map resistance loci from the seedling disease response data and the single nucleotide polymorphism (SNP) marker data. The best among six different regression models was identified for each isolate and association analysis was performed separately for each. A total of 138 significant (-log10P value > 3.0) marker-trait associations (MTA) were detected. Using a 5 cM cutoff, a total of 10, 8, 13, and 10 quantitative trait loci (QTL) associated with SFNB resistance were identified for the FGO, SG1, NZKF2, and DEN 2.6 isolates, respectively. Loci containing from 1 to 34 MTA were identified on all seven barley chromosomes with one locus at 66 to 69 cM on chromosome 2H common to all four isolates. Six distinct loci were identified by the association mapping (AM) analysis that corresponded to previously characterized SFNB resistance QTL identified by biparental population analysis (QRpt4, QRpt6, Rpt4, Rpt6, Rpt7, and a QTL on 4H that was not given a provisional gene or QTL nomenclature). The 21 putative novel loci identified may represent a broad spectrum of resistance and or susceptibility loci. This is the first comprehensive AM study to characterize SFNB resistance loci underlying broad populations of the barley host and P. teres f. maculata pathogen.
C1 [Tamang, Prabin; Neupane, Anjan; Friesen, Timothy; Brueggeman, Robert] N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58108 USA.
[Mamidi, Sujan] N Dakota State Univ, Dept Plant Sci, Fargo, ND 58108 USA.
[Friesen, Timothy] USDA ARS, Red River Valley Agr Res Ctr, Cereal Crops Res Unit, Fargo, ND 58102 USA.
RP Brueggeman, R (reprint author), N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58108 USA.
EM Robert.Brueggeman@ndsu.edu
OI mamidi, sujan/0000-0002-3837-6121
FU USDA-NIFA-AFRI [2011-68002-30029]
FX This research was supported by funding from USDA-NIFA-AFRI grant number
2011-68002-30029 (T-CAP).
NR 76
TC 6
Z9 6
U1 1
U2 23
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
BP 500
EP 508
DI 10.1094/PHYTO-04-14-0106-R
PG 9
WC Plant Sciences
SC Plant Sciences
GA CG0SS
UT WOS:000352979600013
PM 25870925
ER
PT J
AU Neupane, A
Tamang, P
Brueggeman, RS
Friesen, TL
AF Neupane, A.
Tamang, P.
Brueggeman, R. S.
Friesen, T. L.
TI Evaluation of a Barley Core Collection for Spot Form Net Blotch Reaction
Reveals Distinct Genotype-Specific Pathogen Virulence and Host
Susceptibility
SO PHYTOPATHOLOGY
LA English
DT Article
ID TERES-F-MACULATA; PYRENOPHORA-TRITICI-REPENTIS; STAGONOSPORA-NODORUM;
CHROMOSOMAL LOCATION; DISEASE RESISTANCE; WESTERN CANADA; WHEAT;
IDENTIFICATION; AUSTRALIA; YIELD
AB Spot form net blotch (SFNB) caused by Pyrenophora teres f. maculata is a major foliar disease of barley (Hordeum vulgare) worldwide. SFNB epidemics have recently been observed in major barley producing countries, suggesting that the local barley cultivars are not resistant and that virulence of the local pathogen populations may have changed. Here we attempt to identify sources of resistance effective against four diverse isolates of P. teres f. maculata collected from around the world. A total of 2,062 world barley core collection accessions were phenotyped using isolates of the pathogen collected in the United States (FGO), Australia (SG1), New Zealand (NZKF2), and Denmark (DEN 2.6). Isolate-specific susceptibility was identified in several of the barley accessions tested, indicating variability in both pathogen virulence and host resistance/susceptibility. Collectively, only 15 barley accessions were resistant across all isolates tested. These resistant accessions will be used to generate mapping populations and for germplasm development. Future research will involve the characterization of host resistance, pathogen virulence, and the host-pathogen interaction associated with SFNB of barley.
C1 [Neupane, A.; Tamang, P.; Brueggeman, R. S.] N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58108 USA.
[Friesen, T. L.] USDA ARS, Cereal Crops Res Unit, No Crop Sci Lab, Fargo, ND 58102 USA.
RP Friesen, TL (reprint author), USDA ARS, Cereal Crops Res Unit, No Crop Sci Lab, Fargo, ND 58102 USA.
EM Timothy.Friesen@ars.usda.gov
FU USDA-ARS CRIS [5442-22000-048-00D]; USDA-NIFA-AFRI [2011-68002-30029
(T-CAP)]; North Dakota Barley Council; Montana Wheat and Barley
Committee
FX This research was supported by funding from USDA-ARS CRIS Project
5442-22000-048-00D, USDA-NIFA-AFRI grant number 2011-68002-30029
(T-CAP), the North Dakota Barley Council, and the Montana Wheat and
Barley Committee. We thank D. Holmes for technical assistance, and S. Xu
and Z. Liu for critical review. Mention of trade names or commercial
products in this publication is solely for the purpose of providing
specific information and does not imply recommendation or endorsement by
the U.S. Department of Agriculture (USDA). USDA is an equal opportunity
provider and employer.
NR 36
TC 3
Z9 3
U1 0
U2 9
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
BP 509
EP 517
DI 10.1094/PHYTO-04-14-0107-R
PG 9
WC Plant Sciences
SC Plant Sciences
GA CG0SS
UT WOS:000352979600014
PM 25870926
ER
PT J
AU Roy, A
Stone, AL
Shao, J
Otero-Colina, G
Wei, G
Choudhary, N
Achor, D
Levy, L
Nakhla, MK
Hartung, JS
Schneider, WL
Brlansky, RH
AF Roy, Avijit
Stone, Andrew L.
Shao, Jonathan
Otero-Colina, Gabriel
Wei, Gang
Choudhary, Nandlal
Achor, Diann
Levy, Laurene
Nakhla, Mark K.
Hartung, John S.
Schneider, William L.
Brlansky, Ronald H.
TI Identification and Molecular Characterization of Nuclear Citrus leprosis
virus, a Member of the Proposed Dichorhavirus Genus Infecting Multiple
Citrus Species in Mexico
SO PHYTOPATHOLOGY
LA English
DT Article
ID ORCHID-FLECK-VIRUS; COMPLETE NUCLEOTIDE-SEQUENCE; STRAND RNA VIRUSES;
YELLOW NET VIRUS; BIG-VEIN-VIRUS; BREVIPALPUS-PHOENICIS ACARI; GENOMIC
ORGANIZATION; COAT PROTEIN; MOSAIC-VIRUS; CILV-C
AB Citrus leprosis is one of the most destructive diseases of Citrus spp. and is associated with two unrelated virus groups that produce particles primarily in either the cytoplasm or nucleus of infected plant cells. Symptoms of leprosis, including chlorotic spots surrounded by yellow haloes on leaves and necrotic spots on twigs and fruit, were observed on leprosis-affected mandarin and navel sweet orange trees in the state of Quer6taro, Mexico. Serological and molecular assays showed that the cytoplasmic types of Citrus leprosis virus (CiLV-C) often associated with leprosis symptomatic tissues were absent. However, using transmission electron microscopy, bullet-shaped rhabdovirus-like virions were observed in the nuclei and cytoplasm of the citrus leprosis-infected leaf tissues. An analysis of small RNA populations from symptomatic tissue was carried out to determine the genome sequence of the rhabdovirus-like particles observed in the citrus leprosis samples. The complete genome sequence showed that the nuclear type of CiLV (CiLV-N) present in the samples consisted of two negative-sense RNAs: 6,268-nucleotide (nt)long RNA1 and 5,847-nt-long RNA2, excluding the poly(A) tails. CiLV-N had a genome organization identical to that of Orchid fleck virus (OFV), with the exception of shorter 5' untranslated regions in RNA1 (53 versus 205 nt) and RNA2 (34 versus 182 nt). Phylogenetic trees constructed with the amino acid sequences of the nucleocapsid (N) and glycoproteins (G) and the RNA polymerase (L protein) showed that CiLV-N clusters with OFV. Furthermore, phylogenetic analyses of N protein established CiLV-N as a member of the proposed genus Dichorhavirus. Reversetranscription polymerase chain reaction primers for the detection of CiLV-N were designed based on the sequence of the N gene and the assay was optimized and tested to detect the presence of CiLV-N in both diseased and symptom-free plants.
C1 [Roy, Avijit; Choudhary, Nandlal; Achor, Diann; Brlansky, Ronald H.] Univ Florida, IFAS, Dept Plant Pathol, Ctr Citrus Res & Educ, Lake Alfred, FL 33850 USA.
[Stone, Andrew L.; Schneider, William L.] USDA ARS, FDWSRU, Ft Detrick, MD USA.
[Shao, Jonathan; Hartung, John S.] USDA ARS, MPPL, Beltsville, MD USA.
[Otero-Colina, Gabriel] Colegio Postgrad, Texcoco 56230, Edo De Mex, Mexico.
[Wei, Gang; Nakhla, Mark K.] US Anim & Plant Hlth Inspect Serv, USDA, Plant Protect & Quarantine, Ctr Plant Hlth Sci & Technol CSIRO, Beltsville, MD USA.
[Levy, Laurene] USDA APHIS PPQ CPHST, Riverdale, MD USA.
RP Brlansky, RH (reprint author), Univ Florida, IFAS, Dept Plant Pathol, Ctr Citrus Res & Educ, 700 Expt Stn Rd, Lake Alfred, FL 33850 USA.
EM rhby@ufl.edu
FU USDA-APHIS-PPQ [11-8130-1246]; Citrus Research & Development Foundation
[405]
FX We thank M. G. Leon, Centro de Investigacion La Libertad, CORPOICA,
Villavicencio, Colombia, for providing the CiLV-C2 infected samples; M.
J. Melzer, University of Hawaii, Honolulu, for providing the total RNA
of hibiscus infecting Cilevirus and HGSV-2; and H. Kondo, Institute of
Plant Science and Bio resources, Okayama University, Kurashiki, Japan,
for providing OFV antisera, used in this study. This research was
financially supported by the USDA-APHIS-PPQ cooperative agreement
11-8130-1246 and Citrus Research & Development Foundation grant 405.
NR 65
TC 4
Z9 5
U1 8
U2 18
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
EI 1943-7684
J9 PHYTOPATHOLOGY
JI Phytopathology
PD APR
PY 2015
VL 105
IS 4
BP 564
EP 575
DI 10.1094/PHYTO-09-14-0245-R
PG 12
WC Plant Sciences
SC Plant Sciences
GA CG0SS
UT WOS:000352979600021
PM 25423071
ER
PT J
AU Garcia-Gonzalez, MC
Vanotti, MB
AF Garcia-Gonzalez, M. C.
Vanotti, M. B.
TI Recovery of ammonia from swine manure using gas-permeable membranes:
Effect of waste strength and pH
SO WASTE MANAGEMENT
LA English
DT Article
DE Gas-permeable membranes; Ammonia recovery; Swine manure; Waste
management
ID ANAEROBIC-DIGESTION; POULTRY LITTER; DAIRY MANURE; REMOVAL
AB Nitrogen recovery from swine manure was investigated using gas-permeable membranes. The process involved a continuous recirculation of an acidic solution through a gas-permeable membrane submerged in manure. Ammonia from manure was concentrated in the acidic solution increasing its pH, while pH decreased in manure. In the first set of experiments, nitrogen recovery efficiency was evaluated with no pH adjustment of manure; whereas in the second, manure with three different ammonia (NH3) concentrations (from 1070 to 2290 mg/L) was used adjusting their pH to 9 whenever pH decreased below 7.7. With no pH adjustment, NH3 recovery from manure was 55%, while NH3 recovery averaged 81% when pH of manure was adjusted. This work showed that as waste strength and available NH3 content increased in manure, more N was captured by the membrane. These results suggested that the gaspermeable membranes are a useful technology for NH3 recovery from manure, reducing environmental pollution whilst converting NH3 into a valuable ammonium (NH4+) salt fertilizer. (C) 2015 Elsevier Ltd. All rights reserved.
C1 [Garcia-Gonzalez, M. C.] Agr Technol Inst Castilla & Leon ITACyL, Valladolid 47071, Spain.
[Vanotti, M. B.] USDA ARS, Coastal Plains Soil Water & Plant Res Ctr, Florence, SC USA.
RP Garcia-Gonzalez, MC (reprint author), Agr Technol Inst Castilla & Leon ITACyL, Carretera Burgos,Km 119, Valladolid 47071, Spain.
EM gargonmi@itacyl.es
FU INIA/FEDER [CC09-072]; USDA-ARS [6657-13630-001-00D]
FX This work has been funded by the INIA/FEDER under the project CC09-072.
Cooperation with USDA-ARS Project 6657-13630-001-00D "Innovative Animal
Manure Treatment Technologies for Enhanced Environmental Quality" is
grateful acknowledged. Mention of trade names or commercial products in
this article is solely for the purpose of providing specific information
and does not imply recommendation or endorsement by the U.S. Department
of Agriculture.
NR 22
TC 2
Z9 2
U1 1
U2 14
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0956-053X
J9 WASTE MANAGE
JI Waste Manage.
PD APR
PY 2015
VL 38
BP 455
EP 461
DI 10.1016/j.wasman.2015.01.021
PG 7
WC Engineering, Environmental; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA CG3JN
UT WOS:000353176600052
PM 25687948
ER
PT J
AU Voruganti, VS
Laston, S
Haack, K
Mehta, NR
Cole, SA
Butte, NF
Comuzzie, AG
AF Voruganti, V. Saroja
Laston, Sandra
Haack, Karin
Mehta, Nitesh R.
Cole, Shelley A.
Butte, Nancy F.
Comuzzie, Anthony G.
TI Serum uric acid concentrations and SLC2A9 genetic variation in Hispanic
children: the Viva La Familia Study
SO AMERICAN JOURNAL OF CLINICAL NUTRITION
LA English
DT Article
DE hyperuricemia; obesity; metabolic syndrome; SNP association; urate
transporter
ID GENOME-WIDE ASSOCIATION; METABOLIC SYNDROME; CARDIOVASCULAR-DISEASE;
BLOOD-PRESSURE; RISK-FACTORS; PRIMARY HYPERTENSION; MEXICAN-AMERICANS;
CHILDHOOD OBESITY; PEDIGREE ANALYSIS; LINKAGE ANALYSIS
AB Background: Elevated concentrations of serum uric acid are associated with increased risk of gout and renal and cardiovascular diseases. Genetic studies in adults have consistently identified associations of solute carrier family 2, member 9 (SLC2A9), polymorphisms with variation in serum uric acid. However, it is not known whether the association of serum uric acid with SLC2A9 polymorphisms manifests in children.
Objective: The aim was to investigate whether variation in serum uric acid is under genetic influence and whether the association with SLC2A9 polymorphisms generalizes to Hispanic children of the Viva La Familia Study.
Design: We conducted a genomewide association study with 1.1 million genetic markers in 815 children.
Results: We found serum uric acid to be significantly heritable [h(2) +/- SD = 0.45 +/- 0.08, P = 5.8 X 10(-1)1] and associated with SLC2A9 variants (P values between 10(-16) and 10(-7)). Several of the significantly associated polymorphisms were previously identified in studies in adults. We also found positive genetic correlations between serum uric acid and BMI z score (rho(G) = 0.45, P = 0.002), percentage of body fat (rho(G) = 0.28, P = 0.04), fat mass (rho(G) = 0.34, P = 0.02), waist circumference (rho(G) = 0.42, P = 0.003), and waist-toheight ratio (PG = 0.46, P = 0.001).
Conclusions: Our results show that variation in serum uric acid in Hispanic children is under considerable genetic influence and is associated with obesity-related phenotypes. As in adults, genetic variation in SLC2A9 is associated with serum uric acid concentrations, an important biomarker of renal and cardiovascular disease risk, in Hispanic children.
C1 [Voruganti, V. Saroja] Univ North Carolina Chapel Hill, Dept Nutr, Kannapolis, NC 28081 USA.
[Voruganti, V. Saroja] Univ North Carolina Chapel Hill, UNC Nutr Res Inst, Kannapolis, NC 28081 USA.
[Laston, Sandra; Haack, Karin; Cole, Shelley A.; Comuzzie, Anthony G.] Texas Biomed Res Inst, Dept Genet, San Antonio, TX USA.
[Mehta, Nitesh R.; Butte, Nancy F.] Baylor Coll Med, Dept Pediat, Childrens Nutr Res Ctr, USDA ARS, Houston, TX 77030 USA.
RP Voruganti, VS (reprint author), Univ North Carolina Chapel Hill, Dept Nutr, 500 Laureate Way, Kannapolis, NC 28081 USA.
EM saroja@unc.edu
FU NIH [DK080457, MH59490]; USDA/Agricultural Research Service
[6250-51000-053]; Research Facilities Improvement Program of the
National Center for Research Resources, NIH [C06 RR013556, C06 RR017515]
FX Supported by the NIH (DK080457) and the USDA/Agricultural Research
Service (cooperative agreement 6250-51000-053). The development of SOLAR
(Sequential Oligogenic Linkage Analysis Routine) was supported by NIH
grant MH59490. Work performed at the Texas Biomedical Research Institute
in San Antonio, TX, was conducted in facilities constructed with support
from the Research Facilities Improvement Program of the National Center
for Research Resources, NIH (C06 RR013556, C06 RR017515).
NR 60
TC 4
Z9 4
U1 1
U2 5
PU AMER SOC NUTRITION-ASN
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814 USA
SN 0002-9165
EI 1938-3207
J9 AM J CLIN NUTR
JI Am. J. Clin. Nutr.
PD APR
PY 2015
VL 101
IS 4
BP 725
EP 732
DI 10.3945/ajcn.114.095364
PG 8
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA CF1VM
UT WOS:000352336000007
PM 25833971
ER
PT J
AU Traber, MG
Leonard, SW
Bobe, G
Fu, XY
Saltzman, E
Grusak, MA
Booth, SL
AF Traber, Maret G.
Leonard, Scott W.
Bobe, Gerd
Fu, Xueyan
Saltzman, Edward
Grusak, Michael A.
Booth, Sarah L.
TI alpha-Tocopherol disappearance rates from plasma depend on lipid
concentrations: studies using deuterium-labeled collard greens in
younger and older adults
SO AMERICAN JOURNAL OF CLINICAL NUTRITION
LA English
DT Article
DE age; bioavailability; cholesterol; pharmacokinetics; triacylglycerides;
vitamin E
ID VITAMIN-E; MASS-SPECTROMETRY; PHYLLOQUINONE; BIOKINETICS; METABOLISM;
ABSORPTION; MEN; REQUIREMENTS; ACETATE; HUMANS
AB Background: Little is known about a-tocopherol's bioavailability as a constituent of food or its dependence on a subject's age.
Objective: To evaluate the a-tocopherol bioavailability from food, we used collard greens grown in deuterated water (2H collard greens) as a source of deuterium-labeled (2H) a-tocopherol consumed by younger and older adults in a post hoc analysis of a vitamin K study.
Design: Younger (mean +/- SD age: 32 +/- 7 y; n = 12 women and 9 men) and older (aged 67 8 y; n = 8 women and 12 men) adults consumed a test breakfast that included 120 g 2H collard greens (1.2 +/- 0.1 mg H-2-alpha-tocopherol).. Plasma unlabeled a-tocophefol and 2H-a-tocopherol were measured by using liquid chromatography mass spectrometry from fasting (>12 h) blood samples drawn before breakfast (0 h) and at 24, 48, and 72 h and from postprandial samples collected at 4, 5, 6, 7, 9, 12, and 16 h.
Results: Times (12.6 +/- 2.5 h) of maximum plasma H-2-alpha-tocopherol concentrations (0.82% +/- 0.59% total a-tocopherol), fractional disappearance rates (0.63 +/- 0.26 pools/d), half-lives (30 +/- 11 h), and the minimum estimated H-2-alpha-tocopherol absorbed (24% +/- 16%) did not vary between age groups or sexes (n = 41). Unlabeled a-tocopherol concentrations were higher in older adults (26.4 +/- 8.6 Amon) than in younger adults (19.3 +/- 4.2 mu mol/L; P = 0.0019) and correlated with serum lipids (r = 0.4938, P = 0.0012). In addition, H-2-alpha-tocopherol half-lives were correlated with lipids (r = 0.4361, P = 0.0044).
Conclusions: Paradoxically, alpha-tocopherol remained in circulation longer in participants with higher serum lipids, but the H-2-alpha-tocopherol absorbed was not dependent on the plasma lipid status. Neither variable was dependent on age. These data suggest that plasma alpha-tocopherol concentrations are more dependent on mechanisms that control circulating lipids rather than those related to its absorption and initial incorporation into plasma.
C1 [Traber, Maret G.; Leonard, Scott W.; Bobe, Gerd] Oregon State Univ, Linus Pauling Inst, Corvallis, OR 97331 USA.
[Fu, Xueyan; Saltzman, Edward; Booth, Sarah L.] Tufts Univ, USDA, Human Nutr Ctr Aging, Boston, MA 02111 USA.
[Grusak, Michael A.] Baylor Coll Med, USDA ARS, Childrens Nutr Res Ctr, Dept Pediat, Houston, TX 77030 USA.
RP Traber, MG (reprint author), Oregon State Univ, Linus Pauling Inst, 307 Linus Pauling Sci Ctr, Corvallis, OR 97331 USA.
EM maret.traber@oregonstate.edu
OI Traber, Maret/0000-0002-2892-4024
FU USDA Agricultural Research Service [58-1950-7-707, 58-6250-0-008]; NIH
[R01DK69341, DK081761]
FX Supported by the USDA Agricultural Research Service (cooperative
agreements 58-1950-7-707 and 58-6250-0-008 and the NIH [R01DK69341 (to
SLB) and DK081761 (to MGT)]. Hermes Arzneimittel GmbH, Munich, Germany,
generously donated the supplements used in this study. The internal
standard, alpha-tocotrienol used for mass spectrometry was a gift from
Tomohiro Saito of Eisai Food and Chemical Co., Ltd., Tokyo, Japan.
NR 37
TC 3
Z9 4
U1 0
U2 2
PU AMER SOC NUTRITION-ASN
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814 USA
SN 0002-9165
EI 1938-3207
J9 AM J CLIN NUTR
JI Am. J. Clin. Nutr.
PD APR
PY 2015
VL 101
IS 4
BP 752
EP 759
DI 10.3945/ajcn.114.100966
PG 8
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA CF1VM
UT WOS:000352336000010
PM 25739929
ER
PT J
AU Ligthart-Melis, GC
Marini, JC
Engelen, MPKJ
Deutz, NEP
AF Ligthart-Melis, Gerdien C.
Marini, Juan C.
Engelen, Marielle P. K. J.
Deutz, Nicolaas E. P.
TI Glutamine supplementation, citrulline production, and de novo arginine
synthesis: is there a relation?
SO AMERICAN JOURNAL OF CLINICAL NUTRITION
LA English
DT Letter
ID PLASMA ARGININE; PRECURSOR; KINETICS; ADULTS
C1 [Ligthart-Melis, Gerdien C.; Engelen, Marielle P. K. J.; Deutz, Nicolaas E. P.] Texas A&M Univ, Ctr Translat Res Aging & Longev, Dept Hlth & Kinesiol, College Stn, TX 77843 USA.
[Marini, Juan C.] Baylor Coll Med, Childrens Nutr Res Ctr, Dept Pediat, Sect Crit Care Med, Houston, TX 77030 USA.
[Marini, Juan C.] Baylor Coll Med, Childrens Nutr Res Ctr, USDA ARS, Houston, TX 77030 USA.
RP Ligthart-Melis, GC (reprint author), Texas A&M Univ, Ctr Translat Res Aging & Longev, Dept Hlth & Kinesiol, Suite 210,1700 Res Pkwy, College Stn, TX 77843 USA.
EM gc.melis@ctral.org
OI Deutz, Nicolaas/0000-0001-5845-6447
NR 10
TC 2
Z9 2
U1 0
U2 0
PU AMER SOC NUTRITION-ASN
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814 USA
SN 0002-9165
EI 1938-3207
J9 AM J CLIN NUTR
JI Am. J. Clin. Nutr.
PD APR
PY 2015
VL 101
IS 4
BP 890
EP 892
DI 10.3945/ajcn.114.104679
PG 3
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA CF1VM
UT WOS:000352336000026
PM 25833987
ER
PT J
AU Munyaneza, JE
AF Munyaneza, Joseph E.
TI Zebra Chip Disease, Candidatus Liberibacter, and Potato Psyllid: A
Global Threat to the Potato Industry
SO AMERICAN JOURNAL OF POTATO RESEARCH
LA English
DT Article
DE Potato psyllid; Bactericera cockerelli; Liberibacter; Potato; Zebra chip
ID COCKERELLI HEMIPTERA TRIOZIDAE; BACTERICERA-COCKERELLI; 1ST REPORT;
UNITED-STATES; AFFECTED CARROTS; SOLANUM-TUBEROSUM; NEW-ZEALAND;
SOLANACEARUM; ASSOCIATION; TOMATO
AB Zebra chip (ZC), a new and economically important disease of potato in the United States, Mexico, Central America, and New Zealand, is caused by the bacterium "Candidatus Liberibacter solanacearum", transmitted to potato by the potato psyllid, Bactericera cockerelli. The disease has caused millions of dollars in losses to the potato industry. Whole crops have been rejected because of ZC, occasionally leading to abandonment of entire fields. Plant growth and yield are severely affected by the disease. Chips or fries processed from ZC-infected tubers exhibit dark stripes that become markedly more visible with frying, and hence are commercially unacceptable. Additionally, the disease causes serious losses to the fresh market, tablestock and export potato industry. ZC-infected tubers generally do not sprout and if they do, produce hair sprouts, weak, or short-lived plants. Furthermore, there are indications that ZC symptoms might develop in tubers during storage. All commercial potato cultivars are susceptible to ZC, thus management tactics targeted against the potato psyllid are currently the only means to effectively manage the disease. An overview of ZC history, geographic distribution, biology, epidemiology, and management are discussed.
C1 USDA ARS, Yakima Agr Res Lab, Wapato, WA 98951 USA.
RP Munyaneza, JE (reprint author), USDA ARS, Yakima Agr Res Lab, 5230 Konnowac Pass Rd, Wapato, WA 98951 USA.
EM joseph.munyaneza@ars.usda.gov
NR 60
TC 7
Z9 8
U1 6
U2 27
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1099-209X
EI 1874-9380
J9 AM J POTATO RES
JI Am. J. Potato Res.
PD APR
PY 2015
VL 92
IS 2
BP 230
EP 235
DI 10.1007/s12230-015-9448-6
PG 6
WC Agronomy
SC Agriculture
GA CF9VN
UT WOS:000352915400005
ER
PT J
AU Bamberg, J
del Rio, A
Coombs, J
Douches, D
AF Bamberg, John
del Rio, Alfonso
Coombs, Joseph
Douches, David
TI Assessing SNPs Versus RAPDs for Predicting Heterogeneity and Screening
Efficiency in Wild Potato (Solanum) Species
SO AMERICAN JOURNAL OF POTATO RESEARCH
LA English
DT Article
DE RAPD; SNP; Genetic diversity; Wild species
ID SECTION PETOTA; POLYMORPHISM; POPULATIONS
AB Knowing how genetic diversity is partitioned among and within wild potato species populations is important for efficient sampling for collection, preservation and evaluation. We sought to evaluate the effectiveness of SNPs for assessing germplasm by using the exact set of four model species previously evaluated by RAPDs. To avoid large numbers of SNP samples, population bulks of 25 plants were used, and original RAPD data was adjusted to match SNP genotype data. It was noted that especially for SNPs, it was necessary to examine only loci polymorphic within species to get a realistic view of genetic partitioning within species. This resulted in only a few hundred useful loci for some species. When considering among-population versus within-population partitioning of diversity, both SNPs and RAPDs distinguished the species as expected according to their known breeding system. Primitive wild species were confirmed as very heterogeneous within their populations. Both SNP and RAPD markers can be used to help breeders and genebank managers understand patterns and use in potato germplasm diversity.
C1 [Bamberg, John] ARS, USDA, US Potato Genebank, Sturgeon Bay, WI 54235 USA.
[del Rio, Alfonso] Univ Wisconsin, Dept Hort, US Potato Genebank, Madison, WI 53706 USA.
[Coombs, Joseph; Douches, David] Michigan State Univ, Dept Plant Soil & Microbial Sci, E Lansing, MI USA.
RP Bamberg, J (reprint author), ARS, USDA, US Potato Genebank, 4312 Hwy 42, Sturgeon Bay, WI 54235 USA.
EM John.Bamberg@ars.usda.gov
OI Del Rio, Alfonso/0000-0001-8780-747X
NR 16
TC 3
Z9 3
U1 1
U2 8
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1099-209X
EI 1874-9380
J9 AM J POTATO RES
JI Am. J. Potato Res.
PD APR
PY 2015
VL 92
IS 2
BP 276
EP 283
DI 10.1007/s12230-014-9428-2
PG 8
WC Agronomy
SC Agriculture
GA CF9VN
UT WOS:000352915400011
ER
PT J
AU Hobson, EA
Avery, ML
Wright, TF
AF Hobson, Elizabeth A.
Avery, Michael L.
Wright, Timothy F.
TI The socioecology of Monk Parakeets: Insights into parrot social
complexity (vol 131, pg 756, 2014)
SO AUK
LA English
DT Correction
DE dominance hierarchy; SOCPROG; steepness
ID DOMINANCE HIERARCHIES; STEEPNESS; BONOBOS; MACACA
AB Our recent work on Monk Parakeets (Myiopsitta monachus) reported dominance steepness values that were inaccurate because of a bug in the analysis program. Updated steepness values are more moderate than initially reported, which places captive Monk Parakeet groups midway between egalitarianism and despotism.
C1 [Hobson, Elizabeth A.; Wright, Timothy F.] New Mexico State Univ, Dept Biol, Las Cruces, NM 88003 USA.
[Avery, Michael L.] USDA APHIS WS Natl Wildlife Res Ctr, Florida Field Stn, Gainesville, FL USA.
RP Hobson, EA (reprint author), Univ Tennessee, Natl Inst Math & Biol Synth, Knoxville, TN 37996 USA.
EM ehobson@nimbios.org
NR 12
TC 0
Z9 0
U1 3
U2 12
PU AMER ORNITHOLOGISTS UNION
PI LAWRENCE
PA ORNITHOLOGICAL SOC NORTH AMER PO BOX 1897, LAWRENCE, KS 66044-8897 USA
SN 0004-8038
EI 1938-4254
J9 AUK
JI AUK
PD APR
PY 2015
VL 132
IS 2
BP 422
EP 423
DI 10.1642/AUK-14-254.1
PG 2
WC Ornithology
SC Zoology
GA CF3ZX
UT WOS:000352489000011
ER
PT J
AU Bruner, EA
Okubara, PA
Abi-Ghanem, R
Brown, DJ
Reardon, CL
AF Bruner, Emily A.
Okubara, Patricia A.
Abi-Ghanem, Rita
Brown, David J.
Reardon, Catherine L.
TI Use of pressure cycling technology for cell lysis and recovery of
bacterial and fungal communities from soil
SO BIOTECHNIQUES
LA English
DT Article
DE pressure cycling technology (PCT); soil; microbial community; DNA
extraction; lysis method; quantitative PCR (qPCR); T-RFLP
ID GRADIENT GEL-ELECTROPHORESIS; DNA EXTRACTION METHOD; 16S RIBOSOMAL-RNA;
MICROBIAL DNA; SEDIMENT SAMPLES; PURIFICATION; DIVERSITY;
IDENTIFICATION; ABUNDANCE; STRATEGY
AB Selection of cell lysis methodology is critical to microbial community analyses due to the inability of any single extraction technology to recover the absolute genetic structure from environmental samples. Numerous methodologies are currently applied to interrogate soil communities, each with its own inherent bias. Here we compared the efficacy and bias of three physical cell lysis methods in conjunction with the PowerLyzer PowerSoil DNA Isolation Kit (MO BIO) for direct DNA extraction from soil: bead-beating, vortex disruption, and hydrostatic pressure cycling technology (PCT). PCT lysis, which is relatively new to soil DNA extraction, was optimized for soils of two different textures prior to comparison with traditional bead-beating and vortex disruption lysis. All cell lysis methods successfully recovered DNA. Although the two traditional mechanical lysis methods yielded greater genomic, bacterial, and fungal DNA per gram soil than the PCT method, the latter resulted in a greater number of unique terminal restriction fragments by terminal RFLP (T-RFLP) analysis. These findings indicate the importance of diversity and quantity measures when assessing DNA extraction bias, as soil DNA retrieved by PCT lysis represented populations not found using traditional mechanical lysis methods.
C1 [Bruner, Emily A.; Abi-Ghanem, Rita; Brown, David J.] Washington State Univ, Dept Crop & Soil Sci, Pullman, WA 99164 USA.
[Okubara, Patricia A.] Washington State Univ, USDA ARS, Root Dis & Biol Control Res, Pullman, WA 99164 USA.
[Reardon, Catherine L.] USDA ARS, Columbia Plateau Conservat Res Ctr, Pendleton, OR USA.
RP Okubara, PA (reprint author), Washington State Univ, USDA ARS, Root Dis & Biol Control Res, Pullman, WA 99164 USA.
EM patricia.okubara@ars.usda.gov
RI Brown, David/A-2002-2009
FU USDA-NIFA [2011-67003-3034, 2011-68002-30191]; USDA-ARS
[5248-22000-012-00D, 5356-21610-002-00D]
FX The authors kindly thank Elizabeth Torres and Karmin Corliss for
technical support. This work was supported by USDA-NIFA Award Nos.
2011-67003-3034 and 2011-68002-30191, and USDA-ARS Project Numbers
5248-22000-012-00D (P.A.O.) and 5356-21610-002-00D (C.L.R.).
NR 36
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U1 0
U2 22
PU BIOTECHNIQUES OFFICE
PI NEW YORK
PA 52 VANDERBILT AVE, NEW YORK, NY 10017 USA
SN 0736-6205
EI 1940-9818
J9 BIOTECHNIQUES
JI Biotechniques
PD APR
PY 2015
VL 58
IS 4
BP 171
EP U23
DI 10.2144/000114273
PG 7
WC Biochemical Research Methods; Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA CF8HU
UT WOS:000352797800004
PM 25861929
ER
PT J
AU Frankel, LA
Thompson, D
Power, TG
Hughes, SO
AF Frankel, Leslie A.
Thompson, Debbe
Power, Thomas G.
Hughes, Sheryl O.
TI Correspondence between Maternal Determination of Child Fullness and
Young Children's Self-Determined Fullness Level: Results from a
Standardized Laboratory Protocol
SO CHILDHOOD OBESITY
LA English
DT Article
ID FOOD-INTAKE; OVERWEIGHT; ADIPOSITY; PARENTS; OBESITY; HUNGER; PAIN
AB Background: This study examined maternal understanding and acceptance of young children's ability to self-assess fullness using a mixed-methods approach.
Methods: Twenty low-income mothers of 5- to 7-year-olds participated in this semistructured laboratory study. After consumption of a buffet dinner meal, mothers were asked to indicate their perception of their child's fullness level, and children were also asked to self-assess their fullness level.
Results: Five of the 20 mothers in the study were initially correct in their assessment of their child's level of fullness. Half of the incorrect mothers were willing to change their rating when informed that the child's fullness rating was different than her own.
Conclusions: Semistructured interview results provide suggestive evidence that some mothers believe they understand their child's fullness level better than their children. Given that mothers have the potential to override children's ability to self-regulate eating behavior, teaching mothers to understand and appreciate young children's ability to self-regulate eating is an important area for intervention.
C1 [Frankel, Leslie A.] Univ Houston, Dept Educ Psychol, Houston, TX 77204 USA.
[Thompson, Debbe; Hughes, Sheryl O.] Baylor Coll Med, USDA ARS Childrens Nutr Res Ctr, Houston, TX 77030 USA.
[Power, Thomas G.] Washington State Univ, Dept Human Dev, Pullman, WA 99164 USA.
RP Frankel, LA (reprint author), Univ Houston, Dept Educ Psychol, 491 Farish Hall, Houston, TX 77204 USA.
EM LaFrankel@uh.edu
FU USDA/ARS Children's Nutrition Research Center [6250-51000]; National
Institute of Child Health and Human Development [R01 HD062567]; USDA/ARS
[6250-51000-053]
FX The first author began conducting these analyses as a postdoctoral
associate at the USDA/ARS Children's Nutrition Research Center under the
support of grant no. 6250-51000. This research was also supported by the
National Institute of Child Health and Human Development (R01 HD062567).
This work is a publication of the USDA (USDA/ARS) Children's Nutrition
Research Center, Department of Pediatrics, Baylor College of Medicine,
and had been funded, in part, with federal funds from the USDA/ARS under
Cooperative Agreement No. 6250-51000-053. The contents of this
publication do not necessarily reflect the views or policies of the
USDA, nor does mention of trade names, commercial products, or
organizations imply endorsement from the U.S. government.
NR 17
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Z9 0
U1 2
U2 3
PU MARY ANN LIEBERT, INC
PI NEW ROCHELLE
PA 140 HUGUENOT STREET, 3RD FL, NEW ROCHELLE, NY 10801 USA
SN 2153-2168
EI 2153-2176
J9 CHILD OBES
JI Child Obes.
PD APR 1
PY 2015
VL 11
IS 2
BP 209
EP 214
DI 10.1089/chi.2014.0086
PG 6
WC Pediatrics
SC Pediatrics
GA CF0NE
UT WOS:000352240100015
PM 25692707
ER
PT J
AU Cleveland, BM
Manor, ML
AF Cleveland, Beth M.
Manor, Meghan L.
TI Effects of phytoestrogens on growth-related and lipogenic genes in
rainbow trout (Oncorhynchus mykiss)
SO COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY
LA English
DT Article
DE Fish; Phytoestrogen; Genistein; GeXP; Nutrient partitioning; Soy
ID STURGEON ACIPENSER-BAERI; TILAPIA OREOCHROMIS-MOSSAMBICUS;
ESTROGEN-RECEPTOR SUBTYPES; MEDAKA ORYZIAS-LATIPES; MUSCLE SATELLITE
CELLS; SALMON SALMO-SALAR; SKELETAL-MUSCLE; SIBERIAN STURGEON; ATLANTIC
SALMON; IN-VITRO
AB This study determined whether estradiol (E2) or the phytoestrogens genistein and daidzein regulate expression of growth-related and lipogenic genes in rainbow trout. juvenile fish (5 mon, 65.8 +/- 1.8 g) received intraperitoneal injections of E2, genistein, or daidzein (5 mu g/g body weight) or a higher dose of genistein (50 mu g/g body weight). Liver and white muscle were harvested 24 h post-injection. In liver, expression of vitellogenin (vtg) and estrogen receptor alpha (era 1) increased in all treatments and reflected treatment estrogenicity (E2 > genistein (50 mu g/g) > genistein (5 mu g/g) = daidzein (5 mu g/g)). Estradiol and genistein (50 mu g/g) reduced components of the growth hormone (GH)/insulin-like growth factor (IGF) axis in liver, including increased expression of IGF binding protein-2b1 (igibp2b1) and reduced igibp5b1. In liver E2 and genistein (50 mu g/g) affected expression of components of the transforming growth factor beta signaling mechanism, reduced expression of ppar and rxr transcription factors, and increased expression of fatty acid synthesis genes srebpl, acly, fas, scdl, and gpat and lipid binding proteins fabp3 and Ipl. In muscle E2 and genistein (50 mu g/g) increased era1 and erb1 expression and decreased erb2 expression. Other genes responded to phytoestrogens in a manner that suggested regulation by estrogen receptor-independent mechanisms, including increased ghr2, igibp2a, igjbp4, and igibp5b1. Expression of muscle regulatory factors pax7 and myod was increased by E2 and genistein. These data indicate that genistein and daidzein affect expression of genes in rainbow trout that regulate physiological mechanisms central to growth and nutrient retention. Published by Elsevier Inc.
C1 [Cleveland, Beth M.] ARS, Natl Ctr Cool & Cold Water Aquaculture, USDA, Kearneysville, WV 25430 USA.
[Manor, Meghan L.] W Virginia Univ, Dept Anim & Nutr Sci, Morgantown, WV 26506 USA.
RP Cleveland, BM (reprint author), ARS, NCCCWA, USDA, 11861 Leetown Rd, Kearneysville, WV 25430 USA.
EM beth.cleveland@ars.usda.gov
FU Agricultural Research Service Project [1930-31000-010-000D]
FX The authors acknowledge vital contributions from Lisa Radler during
experiment execution and sample analysis. The efforts of Alicia Manfre,
Debi Dayhoff-Sites, Ross Reid, Genc Sopa, and Dan Fry for gene
expression analysis are greatly appreciated. Josh Kretzer, Jenea
McGowan, and Kyle Jenkins are acknowledged for their contributions to
animal husbandry. Funding for this study came from the Agricultural
Research Service Project 1930-31000-010-000D. Mention of trade names is
solely for the purpose of providing accurate information and should not
imply product endorsement by the United States Department of
Agriculture. USDA is an equal opportunity provider and employer.
NR 69
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U1 4
U2 21
PU ELSEVIER SCIENCE INC
PI NEW YORK
PA 360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA
SN 1532-0456
EI 1878-1659
J9 COMP BIOCHEM PHYS C
JI Comp. Biochem. Physiol. C-Toxicol. Pharmacol.
PD APR
PY 2015
VL 170
BP 28
EP 37
DI 10.1016/j.cbpc.2015.02.001
PG 10
WC Biochemistry & Molecular Biology; Endocrinology & Metabolism;
Toxicology; Zoology
SC Biochemistry & Molecular Biology; Endocrinology & Metabolism;
Toxicology; Zoology
GA CG2DJ
UT WOS:000353084800004
PM 25668741
ER
PT J
AU Caskey, ST
Blaschak, TS
Wohl, E
Schnackenberg, E
Merritt, DM
Dwire, KA
AF Caskey, Simeon T.
Blaschak, Tyanna S.
Wohl, Ellen
Schnackenberg, Elizabeth
Merritt, David M.
Dwire, Kathleen A.
TI Downstream effects of stream flow diversion on channel characteristics
and riparian vegetation in the Colorado Rocky Mountains, USA
SO EARTH SURFACE PROCESSES AND LANDFORMS
LA English
DT Article
DE diversion; riparian vegetation; channel geometry; Colorado; flow
regulation
ID EASTERN SIERRA-NEVADA; UNREGULATED STREAMS; RIVERS; DAMS;
HOMOGENIZATION; BIODIVERSITY; COMMUNITIES; CALIFORNIA; RESPONSES;
IMPACTS
AB Flow diversions are widespread and numerous throughout the semi-arid mountains of the western United States. Diversions vary greatly in their structure and ability to divert water, but can alter the magnitude and duration of base and peak flows, depending upon their size and management. Channel geometry and riparian plant communities have adapted to unique hydrologic and geomorphic conditions existing in the areas subject to fluvial processes. We use geomorphic and vegetation data from low-gradient (3%) streams in the Rocky Mountains of north-central Colorado to assess potential effects of diversion. Data were collected at 37 reaches, including 16 paired upstream and downstream reaches and five unpaired reaches. Channel geometry data were derived from surveys of bankfull channel dimensions and substrate. Vegetation was sampled using a line-point intercept method along transects oriented perpendicular to the channel, with a total of 100 sampling points per reach. Elevation above and distance from the channel were measured at each vegetation sampling point to analyze differences in lateral and vertical zonation of plant communities between upstream and downstream reaches. Geomorphic data were analyzed using mixed effects models. Bankfull width, depth, and cross-sectional area decreased downstream from diversions. Vegetation data were analyzed using biological diversity metrics, richness, evenness and diversity, as well as multivariate community analysis. Evenness increased downstream from diversions, through reduced frequency of wetland indicator species and increased frequency of upland indicator species. Probability of occurrence for upland species downstream of a diversion increases at a greater rate beginning around 05m above active channel. The results suggest that channel morphology and riparian plant communities along low-gradient reaches in montane environments in the Colorado Rocky Mountains are impacted by diversion-induced flow alteration, with the net effect of simplifying and narrowing the channel and homogenizing and terrestrializing riparian plant communities. Copyright (c) 2014 John Wiley & Sons, Ltd.
C1 [Caskey, Simeon T.] Med Bow Natl Forest, Laramie, WY USA.
[Blaschak, Tyanna S.] Lassen Natl Forest, Susanville, CA USA.
[Wohl, Ellen] Colorado State Univ, Dept Geosci, Ft Collins, CO 80523 USA.
[Schnackenberg, Elizabeth] Routt Natl Forest, Steamboat Springs, CO USA.
[Merritt, David M.] US Forest Serv, USDA, NRRC, Ft Collins, CO USA.
[Dwire, Kathleen A.] Rocky Mt Res Stn, Ft Collins, CO USA.
RP Wohl, E (reprint author), Colorado State Univ, Dept Geosci, Ft Collins, CO 80523 USA.
EM ellen.wohl@colostate.edu
FU USDA Forest Service
FX The authors thank the USDA Forest Service for financial and logistical
support of this work. The manuscript was improved by comments from
Stewart Rood and Murray Hicks.
NR 54
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Z9 1
U1 8
U2 48
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0197-9337
EI 1096-9837
J9 EARTH SURF PROC LAND
JI Earth Surf. Process. Landf.
PD APR
PY 2015
VL 40
IS 5
BP 586
EP 598
DI 10.1002/esp.3651
PG 13
WC Geography, Physical; Geosciences, Multidisciplinary
SC Physical Geography; Geology
GA CG1LG
UT WOS:000353033500002
ER
PT J
AU Fahey, TJ
Templer, PH
Anderson, BT
Battles, JJ
Campbell, JL
Driscoll, CT
Fusco, AR
Green, MB
Kassam, KAS
Rodenhouse, NL
Rustad, L
Schaberg, PG
Vadeboncoeur, MA
AF Fahey, Timothy J.
Templer, Pamela H.
Anderson, Bruce T.
Battles, John J.
Campbell, John L.
Driscoll, Charles T., Jr.
Fusco, Anthony R.
Green, Mark B.
Kassam, Karim-Aly S.
Rodenhouse, Nicholas L.
Rustad, Lindsey
Schaberg, Paul G.
Vadeboncoeur, Matthew A.
TI The promise and peril of intensive-site-based ecological research:
insights from the Hubbard Brook ecosystem study
SO ECOLOGY
LA English
DT Article
DE ecosystem; experimental manipulation; historic legacy; Hubbard Brook
Experimental Forest, New Hampshire, USA; intensive sites; long-term
studies; monitoring; scaling up; simulation models
ID NORTHERN HARDWOOD FOREST; NORTHEASTERN UNITED-STATES; INTEGRATED
BIOGEOCHEMICAL MODEL; CENTRAL NEW-ENGLAND; FINE-ROOT DYNAMICS;
LONG-TERM; SUGAR MAPLE; SURFACE WATERS; RED SPRUCE; ICE STORM
AB Ecological research is increasingly concentrated at particular locations or sites. This trend reflects a variety of advantages of intensive, site-based research, but also raises important questions about the nature of such spatially delimited research: how well does site based research represent broader areas, and does it constrain scientific discovery? We provide an overview of these issues with a particular focus on one prominent intensive research site: the Hubbard Brook Experimental Forest (HBEF), New Hampshire, USA. Among the key features of intensive sites are: long-term, archived data sets that provide a context for new discoveries and the elucidation of ecological mechanisms; the capacity to constrain inputs and parameters, and to validate models of complex ecological processes; and the intellectual cross-fertilization among disciplines in ecological and environmental sciences. The feasibility of scaling up ecological observations from intensive sites depends upon both the phenomenon of interest and the characteristics of the site. An evaluation of deviation metrics for the HBEF illustrates that, in some respects, including sensitivity and recovery of streams and trees from acid deposition, this site is representative of the Northern Forest region, of which HBEF is a part. However, the mountainous terrain and lack of significant agricultural legacy make the HBEF among the least disturbed sites in the Northern Forest region. Its relatively cool, wet climate contributes to high stream flow compared to other sites. These similarities and differences between the HBEF and the region can profoundly influence ecological patterns and processes and potentially limit the generality of observations at this and other intensive sites. Indeed, the difficulty of scaling up may be greatest for ecological phenomena that are sensitive to historical disturbance and that exhibit the greatest spatiotemporal variation, such as denitrification in soils and the dynamics of bird communities. Our research shows that end member sites for some processes often provide important insights into the behavior of inherently heterogeneous ecological processes. In the current era of rapid environmental and biological change, key ecological responses at intensive sites will reflect both specific local drivers and regional trends.
C1 [Fahey, Timothy J.; Kassam, Karim-Aly S.] Cornell Univ, Dept Nat Resources, Ithaca, NY 14853 USA.
[Templer, Pamela H.] Boston Univ, Dept Biol, Boston, MA 02215 USA.
[Anderson, Bruce T.; Fusco, Anthony R.] Boston Univ, Dept Earth & Environm, Boston, MA 02215 USA.
[Battles, John J.] Univ Calif Berkeley, Dept Environm Sci Policy & Management, Berkeley, CA 94720 USA.
[Campbell, John L.; Rustad, Lindsey] US Forest Serv, USDA, Durham, NH 03827 USA.
[Driscoll, Charles T., Jr.] Syracuse Univ, Dept Civil & Environm Engn, Syracuse, NY 13244 USA.
[Green, Mark B.] Plymouth State Univ, Ctr Environm, Plymouth, NH 03264 USA.
[Rodenhouse, Nicholas L.] Wellesley Coll, Dept Biol Sci, Wellesley, MA 02481 USA.
[Schaberg, Paul G.] Univ Vermont, Aiken Ctr, No Res Stn, Forest Serv,US Dept Agr, Burlington, VT 05405 USA.
[Vadeboncoeur, Matthew A.] Univ New Hampshire, Earth Syst Res Ctr, Inst Study Earth Oceans & Space, Durham, NH 03824 USA.
RP Fahey, TJ (reprint author), Cornell Univ, Dept Nat Resources, Fernow Hall, Ithaca, NY 14853 USA.
EM tjf5@cornell.edu
RI Battles, John/G-8233-2012;
OI Battles, John/0000-0001-7124-7893; Green, Mark/0000-0002-7415-7209;
Vadeboncoeur, Matthew/0000-0002-8269-0708; Campbell,
John/0000-0003-4956-1696; Driscoll, Charles/0000-0003-2692-2890
FU National Science Foundation
FX The authors thank the following: R. Holmes, P. Doran, and numerous field
assistants for the valley-wide surveys of birds in the HBEF and the many
volunteers that conduct the Breeding Bird Survey; the W. M. Keck
Foundation and R. Warby and C. Johnson for regional surface water
surveys; L. Schneider and S. Hamburg for 1860 land-use map; A. Kosiba
and P. Murakami for regional spruce decline analysis; Tom Luther for
physiographic analysis; and all the field site managers who participated
in the sites survey. This manuscript is a contribution of the Hubbard
Brook Ecosystem Study. Hubbard Brook is part of the LTER network, which
is supported by the National Science Foundation. The Hubbard Brook
Experimental Forest is operated and maintained by the USDA Forest
Service, Northern Research Station, Newtown Square, Pennsylvania, USA.
NR 89
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Z9 4
U1 8
U2 66
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0012-9658
EI 1939-9170
J9 ECOLOGY
JI Ecology
PD APR
PY 2015
VL 96
IS 4
BP 885
EP 901
PG 17
WC Ecology
SC Environmental Sciences & Ecology
GA CG1MY
UT WOS:000353038200001
PM 26230010
ER
PT J
AU Leffler, AJ
James, JJ
Monaco, TA
Sheley, RL
AF Leffler, A. Joshua
James, Jeremy J.
Monaco, Thomas A.
Sheley, Roger L.
TI A new perspective on trait differences between native and invasive
exotic plants: reply
SO ECOLOGY
LA English
DT Editorial Material
ID ECOSYSTEM SERVICES; FUNCTIONAL TRAITS
C1 [Leffler, A. Joshua; Monaco, Thomas A.] USDA ARS, Forage & Range Res Lab, Logan, UT 84322 USA.
[James, Jeremy J.; Sheley, Roger L.] USDA ARS, Eastern Oregon Agr Res Ctr, Burns, OR 97720 USA.
RP Leffler, AJ (reprint author), Univ Alaska Anchorage, Dept Biol Sci, Anchorage, AK 99508 USA.
EM jleffler@cc.usu.edu
NR 14
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Z9 2
U1 7
U2 30
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 0012-9658
EI 1939-9170
J9 ECOLOGY
JI Ecology
PD APR
PY 2015
VL 96
IS 4
BP 1152
EP 1153
PG 3
WC Ecology
SC Environmental Sciences & Ecology
GA CG1MY
UT WOS:000353038200026
PM 26230035
ER
PT J
AU Knight, AL
Basoalto, E
Witzgall, P
AF Knight, Alan L.
Basoalto, Esteban
Witzgall, Peter
TI Improving the Performance of the Granulosis Virus of Codling Moth
(Lepidoptera: Tortricidae) by Adding the Yeast Saccharomyces cerevisiae
with Sugar
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE apple; Cydia pomonella; bait; bread yeast; brown cane sugar
ID MICROENCAPSULATED PEAR ESTER; CYDIA-POMONELLA L.; FIELD EXPERIMENTS;
ALPHA-FARNESENE; GRANULOVIRUS; LARVAE; OLETHREUTIDAE; INSECTICIDES;
ENHANCEMENT; EFFICACY
AB Studies were conducted with the codling moth granulosis virus (CpGV) to evaluate whether adding the yeast Saccharomyces cerevisiae Meyen ex E. C. Hansen with brown cane sugar could improve larval control of Cydia pomonella (L.). Larval mortalities in dipped-apple bioassays with S. cerevisiae or sugar alone were not significantly different from the water control. The addition of S. cerevisiae but not sugar with CpGV significantly increased larval mortality compared with CpGV alone. The combination of S. cerevisiae and sugar with CpGV significantly increased larval mortality compared with CpGV plus either additive alone. The addition of S. cerevisiae improved the efficacy of CpGV similarly to the use of the yeast Metschnikowia pulcherrima (isolated from field-collected larvae). The proportion of uninjured fruit in field trials was significantly increased with the addition of S. cerevisiae and sugar to CpGV compared with CpGV alone only in year 1, and from the controls in both years. In comparison, larval mortality was significantly increased in both years with the addition of S. cerevisiae and sugar with CpGV compared with CpGV alone or from the controls. The numbers of overwintering larvae on trees was significantly reduced from the control following a seasonal program of CpGV plus S. cerevisiae and sugar. The addition of a microencapsulated formulation of pear ester did not improve the performance of CpGV or CpGV plus S. cerevisiae and sugar. These data suggest that yeasts can enhance the effectiveness of the biological control agent CpGV, in managing and maintaining codling moth at low densities.
C1 [Knight, Alan L.] ARS, USDA, Wapato, WA 98951 USA.
[Basoalto, Esteban] Univ Austral Chile, Inst Prod & Sanidad Vegetal, Fac Ciencias Agr, Valdivia, Chile.
[Witzgall, Peter] Swedish Univ Agr Sci, Chem Ecoogy Grp, S-23053 Alnarp, Sweden.
RP Knight, AL (reprint author), ARS, USDA, 5230 Konnowac Pass Rd, Wapato, WA 98951 USA.
EM alan.knight@ars.usda.gov
RI Basoalto Venegas, Esteban/A-6384-2016
OI Basoalto Venegas, Esteban/0000-0003-2280-8978
FU Washington Tree Fruit Research Commission, Wenatchee, WA
FX We would like to thank Duane Larson and Lee Ream, Agricultural Research
Service, U.S. Department of Agriculture (USDA), Wapato, WA, for
providing technical assistance in the laboratory and field, and Dave
Horton for his statistical advice. Helpful reviews of an earlier draft
were obtained from Maciej Pszczolkowski, Missouri State University,
Spring-field, MO, and Douglas Light, USDA, Albany, CA. An anonymous
review of the first submitted version of this paper was also very
helpful to re-focus the writing of the manuscript. This project was
partially funded by the Washington Tree Fruit Research Commission,
Wenatchee, WA.
NR 26
TC 3
Z9 3
U1 3
U2 13
PU ENTOMOLOGICAL SOC AMER
PI ANNAPOLIS
PA 3 PARK PLACE, STE 307, ANNAPOLIS, MD 21401-3722 USA
SN 0046-225X
EI 1938-2936
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD APR
PY 2015
VL 44
IS 2
BP 252
EP 259
DI 10.1093/ee/nvv008
PG 8
WC Entomology
SC Entomology
GA CF6DK
UT WOS:000352646700008
PM 26313179
ER
PT J
AU Mehelis, CN
Balciunas, JK
Reddy, AM
Van der Westhuizen, L
Neser, S
Moran, PJ
AF Mehelis, Christopher N.
Balciunas, Joe K.
Reddy, Angelica M.
Van der Westhuizen, Liame
Neser, Stefan
Moran, Patrick J.
TI Biology and Host Range of Digitivalva delaireae (Lepidoptera:
Glyphipterigidae), a Candidate Agent for Biological Control of Cape-ivy
(Delairea odorata) in California and Oregon
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE biological weed control; host specificity; leaf miner; stem borer;
Senecio mikanioides
ID COMMUNITY-LEVEL CONSEQUENCES; REGALIS DIPTERA TEPHRITIDAE; WASP
TETRAMESA-ROMANA; INVASIVE ALIEN PLANTS; PYRROLIZIDINE ALKALOIDS;
SENECIONEAE ASTERACEAE; SOUTH-AFRICA; GIANT REED; WEEDS; FECUNDITY
AB Cape-ivy (Delairea odorata Lemaire) is an ornamental vine native to South Africa that has escaped into natural areas in coastal California and Oregon, displacing native vegetation. Surveys in South Africa led to the discovery of the leaf-and stem-mining moth Digitivalva delaireae Gaedike and Kruger (Lepidoptera: Glyphipterigidae: Acrolepiinae) as one of several common and damaging native herbivores on Cape-ivy. In greenhouse studies, adult female life span averaged 16 d (46 d maximum). Most (72%) mated females began laying eggs within 72 h of emergence. Females had an average lifetime fecundity of 52 eggs, with >70% laid on leaf laminae, and 89% of eggs were laid by the 15th day postemergence. Lifetime fertility (adult production) averaged three to four offspring per female. At 25 degrees C, egg hatch required 10 d, pupal formation 26 d, and adult emergence 41 d, while under variable greenhouse and laboratory conditions development to adult required 54-60 d. In four-way choice tests, involving 100 plant species other than Cape-ivy, including 11 genera and 37 species in the Asteraceae, subtribe Senecioninae from both native and invaded ranges, D. delaireae inflicted damage and produced pupae only on Cape-ivy. Leaf mining damage occurred on 30% of leaves of native Senecio hydrophilus in no-choice tests and on 2% of leaves in dual-choice tests, but no pupation occurred. If approved for field release in the continental United States, the moth D. delaireae is expected to produce multiple generations per year on Cape-ivy, and to pose little risk of damage to native plants.
C1 [Mehelis, Christopher N.; Balciunas, Joe K.; Reddy, Angelica M.; Moran, Patrick J.] USDA, ARS, US Dept Agr Agr Res Serv, Exot & Invas Weeds Res Unit, Albany, CA 94710 USA.
[Van der Westhuizen, Liame; Neser, Stefan] ARC PPRI, Weeds Res Div, Agr Res Council Plant Protect Res Inst, Pretoria, South Africa.
RP Moran, PJ (reprint author), USDA, ARS, US Dept Agr Agr Res Serv, Exot & Invas Weeds Res Unit, Albany, CA 94710 USA.
EM Patrick.Moran@ars.usda.gov
FU California Invasive Plant Council
FX We thank G. F. Hrusa and D. G. Kelch of the California Department of
Food and Agriculture and the staff of the Herbarium, South African
National Biodiversity Institute, for identification of test plants, Beth
Grobbelaar and Ottilie Neser for assistance with field work in South
Africa, and Michael Pitcairn and Lincoln Smith for critical reviews.
This work was supported in part by the California Invasive Plant
Council.
NR 92
TC 1
Z9 1
U1 7
U2 16
PU ENTOMOLOGICAL SOC AMER
PI ANNAPOLIS
PA 3 PARK PLACE, STE 307, ANNAPOLIS, MD 21401-3722 USA
SN 0046-225X
EI 1938-2936
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD APR
PY 2015
VL 44
IS 2
BP 260
EP 276
DI 10.1093/ee/nvu030
PG 17
WC Entomology
SC Entomology
GA CF6DK
UT WOS:000352646700009
PM 26313180
ER
PT J
AU Mustafa, T
Horton, DR
Cooper, WR
Swisher, KD
Zack, RS
Munyaneza, JE
AF Mustafa, T.
Horton, D. R.
Cooper, W. R.
Swisher, K. D.
Zack, R. S.
Munyaneza, J. E.
TI Interhaplotype Fertility and Effects of Host Plant on Reproductive
Traits of Three Haplotypes of Bactericera cockerelli (Hemiptera:
Triozidae)
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE potato psyllid; haplotype; reproductive trait; interhaplotype fertility;
potato
ID POTATO PSYLLID HAPLOTYPES; UNITED-STATES; LIFE-HISTORY; HOMOPTERA
PSYLLIDAE; ZEBRA CHIP; DIET; NUTRITION; ASSOCIATION; POPULATIONS;
AMERICA
AB Potato psyllid, Bactericera cockerelli (Sulc) (Hemiptera: Triozidae), is a serious pest of solanaceous crops in North and Central America and New Zealand. This insect vectors the bacterium that causes zebra chip disease of potato (Solanum tuberosum L.). Four distinct genetic populations, or haplotypes, of B. cockerelli have been identified. Three of the haplotypes may co-occur in potato fields in the Pacific Northwest of United States. Solanaceous weeds, including the perennial Solanum dulcamara (bittersweet nightshade), may provide refuge for psyllid populations which then migrate to potato crops. This study tested whether fecundity, fertility (% egg hatch), and adult longevity of potato psyllid were affected by host plant (S. dulcamara or potato) and whether these reproductive traits were similar among the three haplotypes that are most common in the Pacfic Northwest: Northwestern, Central, and Western. We hypothesized that the locally resident haplotype (Northwestern), which is known to overwinter extensively on S. dulcamara, would show relatively higher fitness on nightshade than the other two haplotypes. Fecundity differed significantly among haplotypes, with an average lifetime fecundity of 1050, 877, and 629 eggs for Northwestern, Western, and Central females, respectively. Egg hatch was significantly reduced in psyllids reared on bittersweet nightshade (61.9%) versus potato (81.3%). Adult psyllids lived longer on nightshade than on potato, averaging 113.9 and 108.4 d on nightshade and 79.0 and 85.5 d on potato for males and females, respectively. However, the longer life span of psyllids on nightshade than potato failed to lead to higher fecundity, because females on nightshade often ended egglaying well before death, unlike those on potato. There was no evidence for any of the fitness traits to suggest that the locally resident haplotype (Northwestern) performed relatively better on nightshade than the other two haplotypes. Lastly, we examined whether mating between psyllids of different haplotypes affected sperm transfer and egg hatch rates. Females of the Northwestern haplotype failed to produce viable eggs when mated by males of either the Western or Central haplotypes.
C1 [Mustafa, T.; Horton, D. R.; Cooper, W. R.; Swisher, K. D.; Munyaneza, J. E.] USDA ARS, Yakima Agr Res Lab, Wapato, WA 98951 USA.
[Mustafa, T.; Zack, R. S.] Washington State Univ, Dept Entomol, Pullman, WA 99164 USA.
RP Munyaneza, JE (reprint author), USDA ARS, Yakima Agr Res Lab, Wapato, WA 98951 USA.
EM Joseph.Munyaneza@ars.usda.gov
RI Cooper, William/D-3205-2017
FU Northwest Potato Research Consortium, USDA-ARS State Cooperative Potato
Research Program; USDA-NIFA-Specialty Crops Research Initiative
[2009-51181-20176]
FX We would like to thank Venkat Sengoda, Millie Heidt, Francisco de la
Rosa, and Deb Broers for technical assistance. Financial support for
this research was partially provided by Northwest Potato Research
Consortium, USDA-ARS State Cooperative Potato Research Program, and
USDA-NIFA-Specialty Crops Research Initiative (Project
2009-51181-20176).
NR 41
TC 2
Z9 3
U1 1
U2 9
PU ENTOMOLOGICAL SOC AMER
PI ANNAPOLIS
PA 3 PARK PLACE, STE 307, ANNAPOLIS, MD 21401-3722 USA
SN 0046-225X
EI 1938-2936
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD APR
PY 2015
VL 44
IS 2
BP 300
EP 308
DI 10.1093/ee/nvu029
PG 9
WC Entomology
SC Entomology
GA CF6DK
UT WOS:000352646700012
PM 26313183
ER
PT J
AU Machtinger, ET
Geden, CJ
Teal, PE
Leppla, NC
AF Machtinger, E. T.
Geden, C. J.
Teal, P. E.
Leppla, N. C.
TI Comparison of Host-Seeking Behavior of the Filth Fly Pupal Parasitoids,
Spalangia cameroni and Muscidifurax raptor (Hymenoptera: Pteromalidae)
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE olfactometer; pteromalid; biological control; Musca domestica; Stomoxys
calcitrans
ID LARIOPHAGUS-DISTINGUENDUS HYMENOPTERA; SEX-RATIO MANIPULATION;
HOUSE-FLIES DIPTERA; BIOLOGICAL-CONTROL; STABLE FLIES; ZARAPTOR
HYMENOPTERA; SPECIES HYMENOPTERA; MUSCA-DOMESTICA; INUNDATIVE RELEASES;
MUSCIDAE PUPAE
AB The pupal parasitoids, Spalangia cameroni Perkins and Muscidifurax raptor Girault and Sanders, can be purchased for biological control of house flies Musca domestica L. and stable flies Stomoxys calcitrans (L.) (Diptera: Muscidae). Little is known about the odors involved in host-seeking behavior of these two species, so odors associated with house flies were investigated in the laboratory using a Y-tube olfactometer. Odor stimuli from house fly host puparia, larvae, pine-shavings bedding with horse manure, and developing flies in the pine-shavings-manure substrate were evaluated in bioassays using the two pteromalid species. In choice tests, naive female S. cameroni were strongly attracted to odor from the substrate containing house fly larvae and secondarily from the uninfested substrate and substrate with puparia versus humidified and purified air. This species also selected the substrate with larvae versus the substrate with the house fly puparia or uninfested substrate. Muscidifurax raptor was attracted to odor from the substrate containing puparia, washed puparia, and substrate with puparia removed. The data suggest that coexistence between the two pteromalid parasitoids, S. cameroni and M. raptor, might be promoted by different host-seeking behavior.
C1 [Machtinger, E. T.; Leppla, N. C.] Univ Florida, Dept Entomol & Nematol, Gainesville, FL 32611 USA.
[Geden, C. J.; Teal, P. E.] ARS, USDA, Ctr Med Agr & Vet Entomol, Gainesville, FL 32611 USA.
RP Machtinger, ET (reprint author), Univ Florida, Dept Entomol & Nematol, POB 110620, Gainesville, FL 32611 USA.
EM irishtangerine@ufl.edu
FU USDA Southern Sustainable Agriculture and Research Education (SARE)
award
FX This research was supported by a USDA Southern Sustainable Agriculture
and Research Education (SARE) award. We would like to thank Elizabeth
Koller for her extensive help conducting the bioassays and Dana Johnson
for maintaining laboratory colonies. We also appreciate the help of Rudy
Strohschein on his design of the glassware used in the experiments.
NR 62
TC 6
Z9 6
U1 5
U2 16
PU ENTOMOLOGICAL SOC AMER
PI ANNAPOLIS
PA 3 PARK PLACE, STE 307, ANNAPOLIS, MD 21401-3722 USA
SN 0046-225X
EI 1938-2936
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD APR
PY 2015
VL 44
IS 2
BP 330
EP 337
DI 10.1093/ee/nvu063
PG 8
WC Entomology
SC Entomology
GA CF6DK
UT WOS:000352646700016
PM 26313187
ER
PT J
AU Abraham, J
Zhang, A
Angeli, S
Abubeker, S
Michel, C
Feng, Y
Rodriguez-Saona, C
AF Abraham, John
Zhang, Aijun
Angeli, Sergio
Abubeker, Sitra
Michel, Caryn
Feng, Yan
Rodriguez-Saona, Cesar
TI Behavioral and Antennal Responses of Drosophila suzukii (Diptera:
Drosophilidae) to Volatiles From Fruit Extracts
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE Olfactometer; GC-EAD; fruit; volatile organic compound; attractant
ID SPOTTED-WING DROSOPHILA; UNITED-STATES; FLY DIPTERA;
ELECTROPHYSIOLOGICAL RESPONSES; POTENTIAL ATTRACTANT;
ANASTREPHA-OBLIQUA; PACIFIC-NORTHWEST; FIELD-EVALUATION; SEX-PHEROMONE;
APPLE MAGGOT
AB Native to Southeast Asia, the spotted wing drosophila, Drosophila suzukii Matsumura (Diptera: Drosophilidae), has become a serious pest of soft-skinned fruit crops since its introduction into North America and Europe in 2008. Current monitoring strategies use baits based on fermentation products; however, to date, no fruit-based volatile blends attractive to this fly have been identified. This is particularly important because females are able to cut into the epicarp of ripening fruit for oviposition. Thus, we conducted studies to: 1) investigate the behavioral responses of adult D. suzukii to volatiles from blueberry, cherry, raspberry, and strawberry fruit extracts; 2) identify the antennally active compounds from the most attractive among the tested extracts (raspberry) using gas chromatography (GC)mass spectrometry and coupled gas chromatography -electroantennographic detection (GC-EAD); and 3) test a synthetic blend containing the EAD-active compounds identified from raspberry extract on adult attraction. In olfactometer studies, both female and male D. suzukii were attracted to all four fruit extracts. The attractiveness of the fruit extracts ranks as: raspberry >= strawberry > blueberry >= cherry. GC analyses showed that the fruit extracts emit distinct volatile compounds. In GC-EAD experiments, 11 raspberry extract volatiles consistently elicited antennal responses in D. suzukii. In choice test bioassays, a synthetic EAD-active blend attracted more D. suzukii than a blank control, but was not as attractive as the raspberry extract. To our knowledge, this is the first report of a behaviorally and antennally active blend of host fruit volatiles attractive to D. suzukii, offering promising opportunities for the development of improved monitoring and behaviourally based management tools.
C1 [Abraham, John; Angeli, Sergio] Free Univ Bozen Bolzano, Fac Sci & Technol, I-39100 Bolzano, Italy.
[Zhang, Aijun; Abubeker, Sitra; Feng, Yan] ARS, USDA, Invas Insect Biocontrol & Behav Lab, Beltsville, MD 20705 USA.
[Michel, Caryn; Rodriguez-Saona, Cesar] Rutgers State Univ, PE Marucci Ctr, Dept Entomol, Chatsworth, NJ 08019 USA.
RP Abraham, J (reprint author), Univ Cape Coast, Dept Entomol & Wildlife, Cape Coast, Ghana.
EM jonnieabraham@daad-alumni.de
RI Angeli, Sergio/A-7720-2008;
OI Angeli, Sergio/0000-0002-8463-7476; Abraham, John/0000-0001-6049-6042
FU New Jersey Blueberry Research Council; New Jersey Specialty Crop Block
Grant; U.S. Department of Agriculture (USDA) Nebraska Integrated Pest
Management (IPM) grant [2013-34103-21468]; Free University of
Bozen-Bolzano
FX We are grateful to Vera Kyryczenko-Roth for help in rearing the D.
suzukii colony, and to Robert Holdcraft for assistance with bioassays.
We would like to thank Elvira de Lange, Tracy Leskey, Anne Nielsen, and
two anonymous reviewers for comments on an early draft of the
manuscript. This project was funded by the New Jersey Blueberry Research
Council, a New Jersey Specialty Crop Block Grant, a U.S. Department of
Agriculture (USDA) Nebraska Integrated Pest Management (IPM) grant
(2013-34103-21468) and a Free University of Bozen-Bolzano overseas grant
for PhD students.
NR 52
TC 10
Z9 10
U1 8
U2 87
PU ENTOMOLOGICAL SOC AMER
PI ANNAPOLIS
PA 3 PARK PLACE, STE 307, ANNAPOLIS, MD 21401-3722 USA
SN 0046-225X
EI 1938-2936
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD APR
PY 2015
VL 44
IS 2
BP 356
EP 367
DI 10.1093/ee/nvv013
PG 12
WC Entomology
SC Entomology
GA CF6DK
UT WOS:000352646700019
PM 26313190
ER
PT J
AU Deutsch, AE
Rodriguez-Saona, CR
Zalapa, JE
Steffan, SA
AF Deutsch, Annie E.
Rodriguez-Saona, Cesar R.
Zalapa, Juan E.
Steffan, Shawn A.
TI Temperature-Mediated Development Thresholds of Sparganothis sulfureana
(Lepidoptera: Tortricidae) in Cranberries
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE Sparganothis sulfureana; degree-day; developmental model; cranberry;
pest management
ID DEPENDENT DEVELOPMENT; MOTH LEPIDOPTERA; MODEL; TIME; ARTHROPODS;
SIMULATION; NOCTUIDAE; PHENOLOGY; PEST
AB Larvae of Sparganothis sulfureana Clemens frequently attack cranberries, often resulting in economic damage to the crop. Because temperature dictates insect growth rate, development can be accurately estimated based on daily temperature measurements. To better predict S. sulfureana development across the growing season, we investigated the temperature range within which S. sulfureana larvae can feed and grow. Larvae were reared at 13 constant temperatures ranging from 6.5-38.6 degrees C. Larval growth rate was determined by the rate of change of larval weight across time. The respective growth rates among these temperatures were modeled using simple linear, cubic, and Lactin nonlinear development functions. These models isolated the lower temperature threshold at which growth became nonzero and the upper temperature at which growth was maximized. All three models were significantly predictive of S. sulfureana growth, but the cubic model best represented the observed growth rates, effectively isolating lower and upper thresholds of 9.97 and 29.89 degrees C, respectively. We propose that these thresholds be used to create a degree-day model of temperature-mediated S. sulfureana development.
C1 [Deutsch, Annie E.; Steffan, Shawn A.] Univ Wisconsin, Dept Entomol, Madison, WI 53706 USA.
[Rodriguez-Saona, Cesar R.] Rutgers State Univ, PE Marucci Ctr Blueberry & Cranberry Res & Extens, Chatsworth, NJ 08019 USA.
[Zalapa, Juan E.; Steffan, Shawn A.] ARS, USDA, Vegetable Crops Res Unit, Madison, WI 53706 USA.
RP Steffan, SA (reprint author), Univ Wisconsin, Dept Entomol, Madison, WI 53706 USA.
EM steffan@entomology.wisc.edu
FU EPA Region 2; NJ Cranberry Research Council; Wisconsin Cranberry Board;
Cranberry Institute; USDA-ARS [3655-21220-001]
FX We thank our Wisconsin cranberry grower collaborators for allowing us to
collect larvae at their marshes, as well as guidance from Ocean Spray,
Inc. and Lady Bug IPM. We also thank Patrick Tobin and Junho Lee for
their statistical and modeling advice. Funding was provided by the EPA
Region 2, NJ Cranberry Research Council, Wisconsin Cranberry Board,
Cranberry Institute, and USDA-ARS appropriated funds (3655-21220-001).
NR 27
TC 1
Z9 1
U1 1
U2 11
PU ENTOMOLOGICAL SOC AMER
PI ANNAPOLIS
PA 3 PARK PLACE, STE 307, ANNAPOLIS, MD 21401-3722 USA
SN 0046-225X
EI 1938-2936
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD APR
PY 2015
VL 44
IS 2
BP 400
EP 405
DI 10.1093/ee/nvu062
PG 6
WC Entomology
SC Entomology
GA CF6DK
UT WOS:000352646700023
PM 26313194
ER
PT J
AU Knothe, G
Phoo, ZWMM
de Castro, MEG
Razon, LF
AF Knothe, Gerhard
Phoo, Zan Win Moh Moh
de Castro, Maria Ellenita G.
Razon, Luis F.
TI Fatty acid profile of Albizia lebbeck and Albizia saman seed oils:
Presence of coronaric acid
SO EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY
LA English
DT Article
DE Albizia; Coronaric acid; Fatty acid profile; Gas chromatography-mass
spectrometry
ID CHRYSANTHEMUM-CORONARIUM; MASS-SPECTROMETRY; COMPONENT ACIDS; ESTERS;
TREES; EPOXY
AB In this work, the fatty acid profiles of the seed oils of Albizia lebbeck and Albizia saman (Samanea saman) are reported. The oils were analyzed by GC, GC-MS and NMR. The most prominent fatty acid in both oils is linoleic acid (30-40%), followed by palmitic acid and oleic acid for A. lebbeck and oleic acid and behenic acid for A. saman. Both oils contain slightly more than 30% saturated fatty acids with stearic, eicosanoic and tetracosanoic acids present as well as odd-numbered saturated fatty acids in minor amounts. Furthermore, for the first time, epoxy fatty acids are reported in the fatty acid profiles of Albizia seed oils. Coronaric acid (9,10-epoxy-12(Z)-octadecenoic acid) is the major epoxy fatty acid at approximately 3-4% of the fatty acid profiles with minor amounts of vernolic (12,13-epoxy-9(Z)-octadecenoic acid) and 9,10-epoxystearic acids also detected. The results are compared to previous literature on the fatty acid profiles of other Albizia seed oils. The coronaric acid content of Albizia resembles that of Acacia species with both genera belonging to the Fabaceae family. The mass spectrum of the pyridylcarbinol (picolinyl) ester of coronaric acid is reported.
C1 [Knothe, Gerhard] ARS, USDA, NCAUR, Peoria, IL 61604 USA.
[Phoo, Zan Win Moh Moh; Razon, Luis F.] De La Salle Univ, Dept Chem Engn, Manila 1004, Philippines.
[Phoo, Zan Win Moh Moh] Mandalay Technol Univ, Dept Chem Engn, Mandalay, Myanmar.
[de Castro, Maria Ellenita G.] De La Salle Univ, Dept Biol, Manila 1004, Philippines.
RP Knothe, G (reprint author), ARS, USDA, NCAUR, 1815 N Univ St, Peoria, IL 61604 USA.
EM gerhard.knothe@ars.usda.gov
FU Sustainability Studies Program of the Commission of Higher Education of
the Philippines
FX The authors thank Kevin R. Steidley of USDA/ARS/NCAUR for excellent
technical assistance. The Sustainability Studies Program of the
Commission of Higher Education of the Philippines is acknowledged for a
research grant.
NR 64
TC 1
Z9 1
U1 3
U2 7
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1438-7697
EI 1438-9312
J9 EUR J LIPID SCI TECH
JI Eur. J. Lipid Sci. Technol.
PD APR
PY 2015
VL 117
IS 4
BP 567
EP 574
DI 10.1002/ejlt.201400393
PG 8
WC Food Science & Technology; Nutrition & Dietetics
SC Food Science & Technology; Nutrition & Dietetics
GA CF5CK
UT WOS:000352572800017
ER
PT J
AU Hughes, MA
Inch, SA
Ploetz, RC
Er, HL
van Bruggen, AHC
Smith, JA
AF Hughes, M. A.
Inch, S. A.
Ploetz, R. C.
Er, H. L.
van Bruggen, A. H. C.
Smith, J. A.
TI Responses of swamp bay, Persea palustris, and avocado, Persea americana,
to various concentrations of the laurel wilt pathogen, Raffaelea
lauricola
SO FOREST PATHOLOGY
LA English
DT Article
ID REDBAY AMBROSIA BEETLE; DUTCH ELM DISEASE; XYLEBORUS-GLABRATUS;
LAURACEAE; SYMBIONT; CURCULIONIDAE; CERATOCYSTIS; COLEOPTERA;
SCOLYTINAE; RESISTANCE
AB Laurel wilt, caused by the fungus Raffaelea lauricola and transmitted by the exotic ambrosia beetle Xyleborus glabratus, has killed members of the Lauraceae plant family throughout the southeast United States. A series of experiments were conducted to examine the effects of inoculum concentration on the development of laurel wilt in swamp bay, Persea palustris, and avocado, Persea americana. In each experiment, host plants were inoculated with aqueous suspensions of 10(2), 10(3), 10(4) or 10(5) conidia of R.lauricola, and plants were rated periodically for external symptom development (wilting and foliar dieback). At the end of experiments, plants were rated for internal symptoms of the disease (discoloration of sapwood) and assayed for R.lauricola on a semi-selective medium. Symptom severity in swamp bay was significantly lower for the 10(2) treatment than at higher (10(3)-10(5)) concentrations, whereas 10(2) and 10(3) conidia caused less disease than 10(4) and 10(5) conidia in avocado. At the lowest inoculum concentration, 67% of the swamp bay plants and 20% of the avocados died by the time the respective experiments were terminated. The pathogen was recovered from a high proportion of the symptomatic sapwood of swamp bay (100%) and avocado (94%), and sapwood discoloration and recovery of R.lauricola from inoculated stems of swamp bay were highly correlated with recovery of the pathogen and symptom development in roots. Clearly, swamp bay and avocado are very sensitive to R.lauricola. The ability of only 100 conidia of this pathogen to kill these hosts suggests that few individuals of X.glabratus or other ambrosia beetles that carry low levels of the pathogen would be sufficient to transmit conidia that infect and lead to disease development. The results are also relevant to the development of disease-tolerant host selections, as they indicate levels of the pathogen appropriate for use in screening plants for disease resistance.
C1 [Hughes, M. A.; Smith, J. A.] Univ Florida, Sch Forest Resources & Conservat, Gainesville, FL 32611 USA.
[Inch, S. A.] ARS, US Hort Res Lab, USDA, Ft Pierce, FL USA.
[Ploetz, R. C.] Univ Florida, Dept Plant Pathol, Trop Res & Educ Ctr, Gainesville, FL 32611 USA.
[Er, H. L.; van Bruggen, A. H. C.] Univ Florida, Dept Plant Pathol, Gainesville, FL 32611 USA.
[Er, H. L.; van Bruggen, A. H. C.] Univ Florida, Emerging Pathogens Inst, Gainesville, FL 32611 USA.
RP Hughes, MA (reprint author), Univ Florida, Sch Forest Resources & Conservat, 136 Newins Ziegler Hall, Gainesville, FL 32611 USA.
EM mhughes741@ufl.edu
FU USDA Forest Service [13-DG-11083150-004]; National Institute for Food
and Agriculture [2009-51181-05915]
FX The authors would like to thank the USDA Forest Service, Region 8
(Cooperative Agreement # 13-DG-11083150-004) and the National Institute
for Food and Agriculture (Grant 2009-51181-05915) for providing funding
for this project. James Colee from the IFAS statistical consulting unit
at the University of Florida for aid in data analysis. Also, thanks to
Josh Konkol and Tom White for their technical assistance.
NR 26
TC 3
Z9 3
U1 2
U2 13
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1437-4781
EI 1439-0329
J9 FOREST PATHOL
JI Forest Pathol.
PD APR
PY 2015
VL 45
IS 2
BP 111
EP 119
DI 10.1111/efp.12134
PG 9
WC Forestry
SC Forestry
GA CF6BK
UT WOS:000352641200003
ER
PT J
AU Keca, N
Klopfenstein, NB
Kim, MS
Solheim, H
Woodward, S
AF Keca, N.
Klopfenstein, N. B.
Kim, M. -S.
Solheim, H.
Woodward, S.
TI Initial characterization of an unidentified Armillaria isolate from
Serbia using LSU-IGS1 and TEF-1-alpha genes
SO FOREST PATHOLOGY
LA English
DT Article
ID DNA-BASED IDENTIFICATION; I ALPHA-GENE; SEQUENCES
AB Armillaria species have a global distribution and play variable ecological roles, including causing root disease of diverse forest, ornamental and horticultural trees. Accurate identification of Armillaria species is critical to understand their distribution and ecological roles. This work focused on characterizing an unidentified Armillaria isolate from a Serbian forest using pairing, sequencing of the partial large subunit and intergenic spacer-1 regions of rDNA (LSU-IGS1) and the translation elongation factor-1 alpha gene (tef-1) genes, and phylogenetic analyses. Despite previously obtained LSU-IGS1 RFLP patterns that matched the newly described North American Armillaria altimontana, pairing tests and phylogenetic analyses of LSU-IGS1 and tef-1 sequences clearly demonstrate that the unidentified isolate is not A.altimontana. Based on LSU-IGS1, Armillaria gallica isolates were polyphyletic, and the Serbian isolate clustered with a subset of European A.gallica isolates within a well-supported clade (99%). Based on tef-1, the Serbian isolate appeared as a separate, well-supported clade (97%) that was basal to other poorly resolved, polyphyletic clades containing European A.gallica isolates. It is speculated that the unidentified Armillaria isolate from Serbia could represent an evolutionary ancestral state because of its separate, basal position compared with other clades comprising polyphyletic European A.gallica isolates. Alternatively, this unidentified Serbian isolate could represent an unusual hybrid because of its high-level sequence heterogeneity, represented by multiple two-nucleotide codes, within tef-1. Further characterization is needed to confirm the taxonomic status and ecological/evolutionary significance of this unique, unknown Armillaria isolate from Serbia.
C1 [Keca, N.] Univ Belgrade, Fac Forestry, Belgrade 11030, Serbia.
[Klopfenstein, N. B.] ARS, USDA, Rocky Mt Res Stn, Moscow, ID USA.
[Kim, M. -S.] Kookmin Univ, Dept Forestry Environm & Syst, Seoul, South Korea.
[Solheim, H.] Norwegian Forest & Landscape Inst, As, Norway.
[Woodward, S.] Univ Aberdeen, Inst Biol & Environm Sci, Dept Plant & Soil Sci, Aberdeen, Scotland.
RP Keca, N (reprint author), Univ Belgrade, Fac Forestry, 1 Kneza Viseslava St, Belgrade 11030, Serbia.
EM nenad.keca@sfb.bg.ac.rs
RI Section, Forest Health/B-1469-2015
FU Ministry of Education and Science of the Republic of Serbia; Research
Council of Norway; [TR 37008]; [TR 31041]
FX This research was supported by grant from the Ministry of Education and
Science of the Republic of Serbia and projects TR 37008 and TR 31041. N.
Keca was supported by a grant from the Research Council of Norway during
this work. The authors thank K. Korhonen, METLA, J.J. Guillaumin, INRA
and Kjell Wahlstrom, SLU for the donation of the different haploid
testers of the European Armillaria species. We are also grateful for the
help of O. Olsen from NFLI, who has maintained and conducted tests with
the Armillaria isolates over many years. John W. Hanna is thanked for
technical assistance.
NR 19
TC 0
Z9 0
U1 0
U2 10
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1437-4781
EI 1439-0329
J9 FOREST PATHOL
JI Forest Pathol.
PD APR
PY 2015
VL 45
IS 2
BP 120
EP 126
DI 10.1111/efp.12135
PG 7
WC Forestry
SC Forestry
GA CF6BK
UT WOS:000352641200004
ER
PT J
AU Liu, SW
Li, F
Kong, LN
Sun, Y
Qin, LM
Chen, SY
Cui, HF
Huang, YH
Xia, GM
AF Liu, Shuwei
Li, Fei
Kong, Lina
Sun, Yang
Qin, Lumin
Chen, Suiyun
Cui, Haifeng
Huang, Yinghua
Xia, Guangmin
TI Genetic and Epigenetic Changes in Somatic Hybrid Introgression Lines
Between Wheat and Tall Wheatgrass
SO GENETICS
LA English
DT Article
DE bread wheat; asymmetric somatic hybridization; introgression line;
genomic shock; genetic and epigenetic alteration
ID RAPID GENOMIC CHANGES; NEWLY SYNTHESIZED AMPHIPLOIDS; TRITICUM-AESTIVUM
L.; DNA METHYLATION; AGROPYRON-ELONGATUM; ARABIDOPSIS ALLOTETRAPLOIDS;
POLYPLOID WHEAT; COMMON WHEAT; HYBRIDIZATION; EVOLUTION
AB Broad phenotypic variations were induced in derivatives of an asymmetric somatic hybridization of bread wheat (Triticum aestivum) and tall wheatgrass (Thinopyrum ponticum Podp); however, how these variations occurred was unknown. We explored the nature of these variations by cytogenetic assays and DNA profiling techniques to characterize six genetically stable somatic introgression lines. Karyotyping results show the six lines similar to their wheat parent, but GISH analysis identified the presence of a number of short introgressed tall wheatgrass chromatin segments. DNA profiling revealed many genetic and epigenetic differences, including sequences deletions, altered regulation of gene expression, changed patterns of cytosine methylation, and the reactivation of retrotransposons. Phenotypic variations appear to result from altered repetitive sequences combined with the epigenetic regulation of gene expression and/or retrotransposon transposition. The extent of genetic and epigenetic variation due to the maintenance of parent wheat cells in tissue culture was assessed and shown to be considerably lower than had been induced in the introgression lines. Asymmetric somatic hybridization provides appropriate material to explore the nature of the genetic and epigenetic variations induced by genomic shock.
C1 [Liu, Shuwei; Li, Fei; Kong, Lina; Sun, Yang; Qin, Lumin; Chen, Suiyun; Cui, Haifeng; Xia, Guangmin] Shandong Univ, Sch Life Sci, Minist Educ, Key Lab Plant Cell Engn & Germplasm Innovat, Jinan 250100, Peoples R China.
[Huang, Yinghua] USDA ARS, Plant Sci Res Lab, Stillwater, OK 74075 USA.
RP Xia, GM (reprint author), Shandong Univ, Sch Life Sci, Jinan 250100, Peoples R China.
EM Xiagm@sdu.edu.cn
FU Natural Science Foundation of China [30871320, 31000568]; Major Program
of the Natural Science Foundation of China [31030053]; Shandong Province
Program [Q2006D02]
FX We thank Dr. Austin Cape for careful reading and feedback. This work was
supported by the funds of the Natural Science Foundation of China (no.
30871320; 31000568), Major Program of the Natural Science Foundation of
China (no. 31030053), Shandong Province Program (no. Q2006D02).
NR 55
TC 4
Z9 5
U1 6
U2 25
PU GENETICS SOCIETY AMERICA
PI BETHESDA
PA 9650 ROCKVILLE AVE, BETHESDA, MD 20814 USA
SN 0016-6731
EI 1943-2631
J9 GENETICS
JI Genetics
PD APR
PY 2015
VL 199
IS 4
BP 1035
EP U207
DI 10.1534/genetics.114.174094
PG 20
WC Genetics & Heredity
SC Genetics & Heredity
GA CF7KF
UT WOS:000352734400012
PM 25670745
ER
PT J
AU Ingwersen, WW
Hawkins, TR
Transue, TR
Meyer, DE
Moore, G
Kahn, E
Arbuckle, P
Paulsen, H
Norris, GA
AF Ingwersen, Wesley W.
Hawkins, Troy R.
Transue, Thomas R.
Meyer, David E.
Moore, Gary
Kahn, Ezra
Arbuckle, Peter
Paulsen, Heidi
Norris, Gregory A.
TI A new data architecture for advancing life cycle assessment
SO INTERNATIONAL JOURNAL OF LIFE CYCLE ASSESSMENT
LA English
DT Article
DE Life cycle assessment; Life cycle impact assessment; Resource
description framework; Data harmonization; Nomenclature; Ontology
ID ONTOLOGY
AB Life cycle assessment (LCA) has a technical architecture that limits data interoperability, transparency, and automated integration of external data. More advanced information technologies offer promise for increasing the ease with which information can be synthesized within an LCA framework.
A new architecture is described that combines, stores, and annotates data for life cycle assessment. The Resource Description Framework is proposed for managing LCA data. To explore the capabilities of this approach, the LCA Harmonization Tool (LCA-HT) is being developed to map and store data from different sources and to clearly capture user-defined relationships between nomenclatures for easy use. It will enable increased interoperability of LCA data and more structured and automated incorporation of non-LCA data into LCA models.
The LCA-HT is intended to be a core component of LCA data architecture (a data commons) used by US federal agencies and other data providers to make data representing US conditions more accessible for public use. It will also be used to bring together data from human health exposure models with traditional LCA for evaluating near-field human health risk in the life cycle context to demonstrate the practical advancements possible with this new architecture. The tool will remain open source and freely available.
C1 [Ingwersen, Wesley W.; Meyer, David E.] US EPA, Off Res & Dev, Natl Risk Management Res Lab, Cincinnati, OH 45268 USA.
[Hawkins, Troy R.] Enviance Inc, Cincinnati, OH USA.
[Transue, Thomas R.] Lockheed Martin, Durham, NC USA.
[Moore, Gary; Kahn, Ezra; Arbuckle, Peter] ARS, Natl Agr Lib, USDA, Beltsville, MD USA.
[Paulsen, Heidi] US EPA, Off Environm Informat, Durham, NC USA.
[Norris, Gregory A.] Harvard Univ, Sch Publ Hlth, Boston, MA 02115 USA.
RP Ingwersen, WW (reprint author), US EPA, Off Res & Dev, Natl Risk Management Res Lab, Cincinnati, OH 45268 USA.
EM ingwersen.wesley@epa.gov
OI Ingwersen, Wesley/0000-0002-9614-701X
NR 33
TC 7
Z9 7
U1 1
U2 13
PU SPRINGER HEIDELBERG
PI HEIDELBERG
PA TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY
SN 0948-3349
EI 1614-7502
J9 INT J LIFE CYCLE ASS
JI Int. J. Life Cycle Assess.
PD APR
PY 2015
VL 20
IS 4
BP 520
EP 526
DI 10.1007/s11367-015-0850-6
PG 7
WC Engineering, Environmental; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA CF6FA
UT WOS:000352651200008
ER
PT J
AU Li, J
Solval, KM
Alfaro, L
Zhang, J
Chotiko, A
Delgado, JLB
Chouljenko, A
Bankston, D
Bechtel, PJ
Sathivel, S
AF Li, Juan
Solval, Kevin Mis
Alfaro, Luis
Zhang, Jie
Chotiko, Arranee
Delgado, Jose Luis Brandao
Chouljenko, Alexander
Bankston, David
Bechtel, Peter J.
Sathivel, Subramaniam
TI EFFECT OF BLUEBERRY EXTRACT FROM BLUEBERRY POMACE ON THE
MICROENCAPSULATED FISH OIL
SO JOURNAL OF FOOD PROCESSING AND PRESERVATION
LA English
DT Article
ID DEFATTED RICE BRAN; OXIDATIVE STABILITY; HEALTH-BENEFITS; MICROCAPSULES;
FIBER; CELLS; ACID
AB The effect of the addition of blueberry extract (BE) obtained from blueberry pomace on lipid oxidation of pollock liver oil (PO) during microencapsulation was evaluated. An emulsion containing PO and BE (EBE) was prepared and spray dried in a pilot scale spray dryer. Thiobarbituric acids (TBARS) of EBE were lower (0.41mmol/kg oil) than that of control without BE (ENBE) (0.47mmol/kg oil). Also, TBARS value of 0.49mmol/kg oil for microencapsulated PO with BE (MBE) after spray drying was lower than that of microencapsulated PO without BE (MNBE) (0.57mmol/kg oil). MBE also had a lower TBARS value than that of MNBE after 17 days of storage at 4C and room temperature. This study indicated that BE reduced lipid oxidation of PO during emulsification. It also demonstrated that BE can be successfully used to delay the lipid oxidation during spray drying and storage of PO.
Practical ApplicationsMarine fish oils are good sources of eicosapentaenoic acid and docosahexaenoic acid. Blueberry (Vaccinium spp) extract obtained from blueberry pomace contains numerous bioactive compounds such as anthocyanin and soluble dietary fiber, which makes it a potential additive for functional foods. Because of its antioxidant properties, BE may reduce the oxidation of marine fish oils during microencapsulation processes.
C1 [Li, Juan; Zhang, Jie; Chotiko, Arranee; Delgado, Jose Luis Brandao; Chouljenko, Alexander; Bankston, David; Sathivel, Subramaniam] Louisiana State Univ, Ctr Agr, Dept Food Sci, Baton Rouge, LA 70803 USA.
[Bechtel, Peter J.] ARS, USDA, Food Proc & Sensory Qual Unit, New Orleans, LA USA.
[Solval, Kevin Mis; Alfaro, Luis; Sathivel, Subramaniam] Louisiana State Univ, Ctr Agr, Dept Biol & Agr Engn, Baton Rouge, LA 70803 USA.
RP Sathivel, S (reprint author), Louisiana State Univ, Ctr Agr, Dept Food Sci, Baton Rouge, LA 70803 USA.
EM ssathivel@agcenter.lsu.edu
NR 33
TC 0
Z9 0
U1 7
U2 26
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0145-8892
EI 1745-4549
J9 J FOOD PROCESS PRES
JI J. Food Process Preserv.
PD APR
PY 2015
VL 39
IS 2
BP 199
EP 206
DI 10.1111/jfpp.12222
PG 8
WC Food Science & Technology
SC Food Science & Technology
GA CF4QA
UT WOS:000352534000012
ER
PT J
AU Chen, F
Zhang, G
Barlage, M
Zhang, Y
Hicke, JA
Meddens, A
Zhou, GS
Massman, WJ
Frank, J
AF Chen, Fei
Zhang, Guo
Barlage, Michael
Zhang, Ying
Hicke, Jeffrey A.
Meddens, Arjan
Zhou, Guangsheng
Massman, William J.
Frank, John
TI An Observational and Modeling Study of Impacts of Bark Beetle-Caused
Tree Mortality on Surface Energy and Hydrological Cycles
SO JOURNAL OF HYDROMETEOROLOGY
LA English
DT Article
DE Surface observations; Land surface model; Parameterization;
Subgrid-scale processes
ID WESTERN UNITED-STATES; LODGEPOLE PINE; BRITISH-COLUMBIA; FOREST; STAND;
DISTURBANCES; EMISSIONS; ATTACK; SCALE
AB Bark beetle outbreaks have killed billions of trees and affected millions of hectares of forest during recent decades. The objective of this study was to quantify responses of surface energy and hydrologic fluxes 2-3 yr following a spruce beetle outbreak using measurements and modeling. The authors used observations at the Rocky Mountains Glacier Lakes Ecosystem Experiments Site (GLEES), where beetles killed 85% of the basal area of spruce from 2005-07 (prebeetle) to 2009/10 (postbeetle). Observations showed increased albedo following tree mortality, more reflected solar radiation, and less net radiation, but these postoutbreak radiation changes are smaller than or comparable to their annual preoutbreak variability. The dominant signals from observations were a large reduction (27%) in summer daytime evaporation and a large increase (25%) in sensible heat fluxes. Numerous Noah LSM with multiparameterization options (Noah-MP) simulations incorporating beetle-caused tree mortality effects were conducted to assess their impact on the surface hydrological cycle components that were not directly observed. Model results revealed substantial seasonal variations: more spring snowmelt and runoff, less spring-summer transpiration, and drier soil in summer and fall. This modeled trend is similar to observed runoff changes in harvested forests where reduced forest density resulted in more spring snowmelt and annual water yields. Model results showed that snow albedo changes due to increased litter cover beneath killed trees altered the seasonal pattern of simulated snowmelt and snow water equivalent, but these changes are small compared to the effect of leaf loss. This study highlights the need to include the transient effects of forest disturbances in modeling land-atmosphere interactions and their potential impacts on regional weather and climate.
C1 [Chen, Fei; Barlage, Michael; Zhang, Ying] Natl Ctr Atmospher Res, Boulder, CO 80307 USA.
[Chen, Fei; Zhang, Guo] Chinese Acad Meteorol Sci, China Meteorol Adm, State Key Lab Severe Weather, Beijing, Peoples R China.
[Hicke, Jeffrey A.; Meddens, Arjan] Univ Idaho, Moscow, ID 83843 USA.
[Zhou, Guangsheng] Chinese Acad Meteorol Sci, China Meteorol Adm, Beijing, Peoples R China.
[Massman, William J.; Frank, John] US Forest Serv, Ft Collins, CO USA.
[Frank, John] Univ Wyoming, Laramie, WY 82071 USA.
RP Chen, F (reprint author), NCAR RAL, POB 3000, Boulder, CO 80307 USA.
EM feichen@ucar.edu
RI Chen, Fei/B-1747-2009
FU Chinese Academy of Meteorological Sciences (CAMS) Basic Research Special
Project [2014R009]; NOAA [NA09OAR4310193, NA09OAR4310194]; NCAR BEACHON
(Bio-hydro-atmosphere interactions of Energy, Aerosols, Carbon, H2O,
Organics and Nitrogen)
FX This research was supported by the Chinese Academy of Meteorological
Sciences (CAMS) Basic Research Special Project (2014R009), the NOAA MAPP
and JCSDA grants (NA09OAR4310193 and NA09OAR4310194) and NCAR BEACHON
(Bio-hydro-atmosphere interactions of Energy, Aerosols, Carbon, H2O,
Organics and Nitrogen) and Water System Programs. We thank Dr. Margaret
LeMone for providing valuable comments when internally reviewing the
manuscript.
NR 42
TC 5
Z9 5
U1 4
U2 34
PU AMER METEOROLOGICAL SOC
PI BOSTON
PA 45 BEACON ST, BOSTON, MA 02108-3693 USA
SN 1525-755X
EI 1525-7541
J9 J HYDROMETEOROL
JI J. Hydrometeorol.
PD APR
PY 2015
VL 16
IS 2
BP 744
EP 761
DI 10.1175/JHM-D-14-0059.1
PG 18
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA CF7KM
UT WOS:000352735100018
ER
PT J
AU Rondinelli, WJ
Hornbuckle, BK
Patton, JC
Cosh, MH
Walker, VA
Carr, BD
Logsdon, SD
AF Rondinelli, Wesley J.
Hornbuckle, Brian K.
Patton, Jason C.
Cosh, Michael H.
Walker, Victoria A.
Carr, Benjamin D.
Logsdon, Sally D.
TI Different Rates of Soil Drying after Rainfall Are Observed by the SMOS
Satellite and the South Fork in situ Soil Moisture Network
SO JOURNAL OF HYDROMETEOROLOGY
LA English
DT Article
DE Soil moisture; Remote sensing
ID MICROWAVE EMISSION; RADIATIVE-TRANSFER; SAMPLING DEPTH; UNITED-STATES;
SURFACE; PRECIPITATION; VALIDATION; RADIOMETRY; STABILITY; MODELS
AB Soil moisture affects the spatial variation of land-atmosphere interactions through its influence on the balance of latent and sensible heat fluxes. Wetter soils are more prone to flooding because a smaller fraction of rainfall can infiltrate into the soil. The Soil Moisture Ocean Salinity (SMOS) satellite carries a remote sensing instrument able to make estimates of near-surface soil moisture on a global scale. One way to validate satellite observations is by comparing them with observations made with sparse networks of in situ soil moisture sensors that match the extent of satellite footprints. The rate of soil drying after significant rainfall observed by SMOS is found to be higher than the rate observed by a U.S. Department of Agriculture (USDA) soil moisture network in the watershed of the South Fork Iowa River. This leads to the conclusion that SMOS and the network observe different layers of the soil: SMOS observes a layer of soil at the soil surface that is a few centimeters thick, while the network observes a deeper soil layer centered at the depth at which the in situ soil moisture sensors are buried. It is also found that SMOS near-surface soil moisture is drier than the South Fork network soil moisture, on average. The conclusion that SMOS and the network observe different layers of the soil, and therefore different soil moisture dynamics, cannot explain the dry bias. However, it can account for some of the root-mean-square error in the relationship. In addition, SMOS observations are noisier than the network observations.
C1 [Rondinelli, Wesley J.; Hornbuckle, Brian K.; Patton, Jason C.; Walker, Victoria A.; Carr, Benjamin D.] Iowa State Univ Sci & Technol, Ames, IA 50011 USA.
[Cosh, Michael H.] ARS, Hydrol & Remote Sensing Lab, USDA, Beltsville, MD USA.
[Logsdon, Sally D.] ARS, Natl Lab Agr & Environm, USDA, Ames, IA USA.
RP Hornbuckle, BK (reprint author), Iowa State Univ Sci & Technol, 3007 Agronomy Hall, Ames, IA 50011 USA.
EM bkh@iastate.edu
OI Walker, Victoria/0000-0003-3518-0040
FU NASA Terrestrial Hydrology Program; NASA Earth and Space Sciences
graduate fellowship; USGS/Iowa Water Center; Department of Agronomy at
Iowa State University; USDA Agricultural Research Service; Iowa
Agriculture and Home Economics Experiment Station [IOW05387]
FX The authors received support from the NASA Terrestrial Hydrology
Program, a NASA Earth and Space Sciences graduate fellowship, a grant
from the USGS/Iowa Water Center, the Department of Agronomy at Iowa
State University, and the USDA Agricultural Research Service. The
authors also appreciate the constructive comments made by the reviewers.
This research was performed as part of Iowa Agriculture and Home
Economics Experiment Station project IOW05387.
NR 48
TC 6
Z9 6
U1 6
U2 20
PU AMER METEOROLOGICAL SOC
PI BOSTON
PA 45 BEACON ST, BOSTON, MA 02108-3693 USA
SN 1525-755X
EI 1525-7541
J9 J HYDROMETEOROL
JI J. Hydrometeorol.
PD APR
PY 2015
VL 16
IS 2
BP 889
EP 903
DI 10.1175/JHM-D-14-0137.1
PG 15
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA CF7KM
UT WOS:000352735100027
ER
PT J
AU Parinussa, RM
Holmes, TRH
Wanders, N
Dorigo, WA
de Jeu, RAM
AF Parinussa, Robert M.
Holmes, Thomas R. H.
Wanders, Niko
Dorigo, Wouter A.
de Jeu, Richard A. M.
TI A Preliminary Study toward Consistent Soil Moisture from AMSR2
SO JOURNAL OF HYDROMETEOROLOGY
LA English
DT Article
DE Soil moisture; Climate records; Microwave observations; Remote sensing
ID LAND-SURFACE TEMPERATURE; MICROWAVE OBSERVATIONS; MODEL; ASCAT;
ASSIMILATION; PERFORMANCE; RADIOMETER; RETRIEVAL; PRODUCTS; MISSION
AB A preliminary study toward consistent soil moisture products from the Advanced Microwave Scanning Radiometer 2 (AMSR2) is presented. Its predecessor, the Advanced Microwave Scanning Radiometer for Earth Observing System (AMSR-E), has provided Earth scientists with a consistent and continuous global soil moisture dataset. A major challenge remains to achieve synergy between these soil moisture datasets, which is hampered by the lack of an overlapping observation period of the sensors. Here, observations of the multifrequency microwave radiometer on board the Tropical Rainfall Measuring Mission (TRMM) satellite were used to improve consistency between AMSR-E and AMSR2. Several scenarios to achieve synergy between the AMSR-E and AMSR2 soil moisture products were evaluated. The novel soil moisture retrievals from C-band observations, a frequency band that is lacking on board the TRMM satellite, are also presented. A global comparison of soil moisture retrievals against ERA-Interim soil moisture demonstrates the need for an intercalibration procedure. Several different scenarios based on filtering were tested, and the impact on the soil moisture retrievals was evaluated against two independent reference soil moisture datasets (reanalysis and in situ soil moisture) that cover both individual observation periods of the AMSR-E and AMSR2 sensors. Results show a high degree of consistency between both satellite products and two independent reference products for the soil moisture products retrieved from X-band observations. Care should be taken in the interpretation of the presented soil moisture products, and future research is needed to further align the AMSR2 and AMSR-E sensor calibrations.
C1 [Parinussa, Robert M.; de Jeu, Richard A. M.] Vrije Univ Amsterdam, Earth & Climate Cluster, Amsterdam, Netherlands.
[Parinussa, Robert M.] Univ New S Wales, Sch Civil & Environm Engn, Sydney, NSW 2052, Australia.
[Holmes, Thomas R. H.] ARS, Hydrol & Remote Sensing Lab, USDA, Beltsville, MD USA.
[Holmes, Thomas R. H.] Sci Syst & Applicat, Lanham, MD USA.
[Wanders, Niko] Univ Utrecht, Dept Phys Geog, Utrecht, Netherlands.
[Dorigo, Wouter A.] Vienna Univ Technol, Dept Geodesy & GeoInformat, A-1040 Vienna, Austria.
RP Parinussa, RM (reprint author), Univ New S Wales, Vallentine Annexe H22,Room 127, Sydney, NSW 2052, Australia.
EM r.parinussa@unsw.edu.au
OI Wanders, Niko/0000-0002-7102-5454
FU European Space Agency Climate Change Initiative [4000104814/11/I-NB];
European Commission [282672]; NWO [NWO GO-AO/30]; NASA
[NNH08ZDA001N-DECISIONS]
FX This work has been undertaken as part of the European Space Agency
Climate Change Initiative for soil moisture
(www.esa-soilmoisture-cci.org), Contract 4000104814/11/I-NB.
Additionally, this work was funded by the European Commission's 7th
Framework project, under Grant Agreement 282672, EMBRACE project. Niko
Wanders was funded by a grant from the user support program Space
Research of NWO (Contract NWO GO-AO/30). The authors greatly thank
William Teng and Fan Fang from the GES DISC, as part of a NASA-funded
project NNH08ZDA001N-DECISIONS, for providing the WindSat data. The
authors also like to thank the European Centre for Medium-Range Weather
Forecasts for making the verification data available.
NR 52
TC 15
Z9 17
U1 6
U2 17
PU AMER METEOROLOGICAL SOC
PI BOSTON
PA 45 BEACON ST, BOSTON, MA 02108-3693 USA
SN 1525-755X
EI 1525-7541
J9 J HYDROMETEOROL
JI J. Hydrometeorol.
PD APR
PY 2015
VL 16
IS 2
BP 932
EP 947
DI 10.1175/JHM-D-13-0200.1
PG 16
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA CF7KM
UT WOS:000352735100030
ER
PT J
AU Piccolo, BD
Keim, NL
Fiehn, O
Adams, SH
Van Loan, MD
Newman, JW
AF Piccolo, Brian D.
Keim, Nancy L.
Fiehn, Oliver
Adams, Sean H.
Van Loan, Marta D.
Newman, John W.
TI Habitual Physical Activity and Plasma Metabolomic Patterns Distinguish
Individuals with Low vs. High Weight Loss during Controlled Energy
Restriction
SO JOURNAL OF NUTRITION
LA English
DT Article
DE weight loss; metabolomics; obesity; physical activity; statistical
modeling; body composition; branched-chain amino acids; respiratory
exchange ratio; calorie restriction
ID LIFE-STYLE INTERVENTION; SKELETAL-MUSCLE; FAT OXIDATION; BODY-WEIGHT;
CALORIE RESTRICTION; OBESE ADULTS; RISK-FACTORS; POUNDS LOST; DIET;
WOMEN
AB Background: Total weight loss induced by energy restriction is highly variable even under tightly controlled conditions. Identifying weight-loss discriminants would provide a valuable weight management tool and insights into body weight-regulation.
Objective: This study characterized responsiveness to energy restriction in adults from variables including the plasma metabolome, endocrine and inflammatory markers, clinical indices, body composition, diet, and physical activity.
Methods: Data were derived from a controlled feeding trial investigating the effect of 3-4 dairy product servings in an energy-restricted diet (2092 kJ/d reduction) over 12 wk. Partial least squares regression was used to identify weight-loss discriminants in 67 overweight and obese adults. Linear mixed models were developed to identify discriminant variable differences in high-vs. low-weight-loss responders.
Results: Both pre- and postintervention variables (n = 127) were identified as weight-loss discriminants (root mean squared error of prediction = 1.85 kg; Q(2) = 0.43). Compared with low-responders (LR), high-responders (HR) had greater decreases in body weight (LR: 2.7 +/- 1.6 kg; HR: 9.4 +/- 1.8 kg, P < 0.01), BM I (in kg/m(2); LR: 1.0 +/- 0.6; HR: 3.3 +/- 0.5, P< 0.01), and total fat (LR: 2.2 +/- 1.1 kg; HR: 8.0 +/- 2.1 kg, P < 0.01). Significant group effects unaffected by the intervention were determined for the respiratory exchange ratio (LR: 0.86 +/- 0.05; HR: 0.82 +/- 0.03, P< 0.011, moderate physical activity (LR: 127 +/- 52 min; HR: 167 +/- 68 min, P=0.02), sedentary activity (LR: 1090 +/- 99 min; HR: 1017 +/- 110 min, P= 0.02), and plasma stearate ELR: 102,000 21,000 quantifier ion peak height (QIPH); HR: 116,000 24,000 QIPH, P= 0.011.
Conclusions: Overweight and obese individuals highly responsive to energy restriction had accelerated reductions in adiposity, likely supported in part by higher lipid mobilization and combustion. A novel observation was that person-to-person differences in habitual physical activity and magnitude of weight loss were accompanied by unique blood metabolite signatures.
C1 [Piccolo, Brian D.; Keim, Nancy L.; Adams, Sean H.; Van Loan, Marta D.; Newman, John W.] ARS, Obes & Metab Res Unit, USDA, Western Human Nutr Res Ctr, Davis, CA 95616 USA.
[Piccolo, Brian D.; Fiehn, Oliver; Newman, John W.] Univ Calif Davis, West Coast Metabol Ctr, Genome Ctr, Davis, CA 95616 USA.
[Keim, Nancy L.; Adams, Sean H.; Van Loan, Marta D.; Newman, John W.] Univ Calif Davis, Dept Nutr, Davis, CA 95616 USA.
RP Newman, JW (reprint author), ARS, Obes & Metab Res Unit, USDA, Western Human Nutr Res Ctr, Davis, CA 95616 USA.
EM john.newman@ars.usda.gov
RI Biguzzi, Felipe/E-4724-2015
FU National Dairy Council; USDA Agricultural Research Service
[5306-51530-006-00D, 5306-51530-016-00D, 5306-51530-019-00D]; National
Center for Research Resources Clinical and Translational Science Center
of the University of California, Davis [UL1 RR024146]; NIH West Coast
Metabolomics Center [1 U24 DK097154-01]; USDA Agricultural Research
Service Headquarters Postdoctoral Fellowship
FX Supported by the National Dairy Council and administered by the Dairy
Research Institute (58-5306-2-197 to SHA and 58-5306-9-339 to MDVL) and
the Dairy Council of California. Additional support was provided by USDA
Agricultural Research Service intramural projects (5306-51530-006-00D,
5306-51530-016-00D to MDVL, and 5306-51530-019-00D to NLK, SHA, and
JWN), the National Center for Research Resources Clinical and
Translational Science Center of the University of California, Davis (UL1
RR024146), the NIH West Coast Metabolomics Center (1 U24 DK097154-01 to
OF and JWN), and fiscal year 2013-2015 USDA Agricultural Research
Service Headquarters Postdoctoral Fellowship (to BDP).
NR 56
TC 2
Z9 2
U1 0
U2 18
PU AMER SOC NUTRITION-ASN
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814 USA
SN 0022-3166
EI 1541-6100
J9 J NUTR
JI J. Nutr.
PD APR
PY 2015
VL 145
IS 4
BP 681
EP 690
DI 10.3945/jn.114.201574
PG 10
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA CE9RG
UT WOS:000352180500003
PM 25833772
ER
PT J
AU Piccolo, BD
Comerford, KB
Karakas, SE
Knotts, TA
Fiehn, O
Adams, SH
AF Piccolo, Brian D.
Comerford, Kevin B.
Karakas, Sidika E.
Knotts, Trina A.
Fiehn, Oliver
Adams, Sean H.
TI Whey Protein Supplementation Does Not Alter Plasma Branched-Chained
Amino Acid Profiles but Results in Unique Metabolomics Patterns in Obese
Women Enrolled in an 8-Week Weight Loss Trial
SO JOURNAL OF NUTRITION
LA English
DT Article
DE obesity; weight loss; metabolic syndrome; dairy; protein; BCAA; Leu;
metabolomics; Cys; Pro
ID INSULIN-RESISTANCE; RAT-TISSUES; METABOLISM; DEHYDROGENASE; LIVER; MEN;
INTERVENTION; MECHANISMS; CATABOLISM; REGRESSION
AB Background: It has been suggested that perturbations in branched-chain amino acid (BCAA) catabolism are associated with insulin resistance and contribute to elevated systemic BCAAs. Evidence in rodents suggests dietary protein rich in BCAAs can increase BCAA catabolism, but there is limited evidence in humans.
Objective: We hypothesize that a diet rich in BCAAs will increase BCAA catabolism, which will manifest in a reduction of fasting plasma BCAA concentrations.
Methods: The metabolome of 27 obese women with metabolic syndrome before and after weight loss was investigated to identify changes in BCAA metabolism using GC-time-of-flight mass spectrometry. Subjects were enrolled in an 8-wk weight-loss study including either a 20-g/d whey (whey group, n = 16) or gelatin (gelatin group, n=11) protein supplement. When matched for total protein by weight, whey protein has 3 times the amount of BCAAs compared with gelatin protein.
Results: Postintervention plasma abundances of Ile (gelatin group: 637 18, quantifier ion peak height 100; whey group: 744 +/- 65), Leu (gelatin group: 1210 +/- 33; whey group: 1380+/-79), and Val (gelatin group: 2080+/-59; whey group: 2510+/-230) did not differ between treatment groups. BCAAs were significantly correlated with homeostasis model assessment of insulin resistance at baseline (r=0.52, 0.43, and 0.49 for Leu, Ile, and Val, respectively; all, P<0.05), but correlations were no longer significant at postintervention. Pro-and Cys-related pathways were found discriminant of whey protein vs. gelatin protein supplementation in multivariate statistical analyses.
Conclusions: These findings suggest that BCAA metabolism is, at best, only modestly affected at a whey protein supplementation dose of 20 g/d. Furthermore, the loss of an association between postintervention BCAA and homeostasis model assessment suggests that factors associated with calorie restriction or protein intake affect how plasma BCAAs relate to insulin sensitivity.
C1 [Piccolo, Brian D.; Knotts, Trina A.; Adams, Sean H.] ARS, Obes & Metab Res Unit, USDA, Western Human Nutr Res Ctr, Davis, CA 95616 USA.
[Comerford, Kevin B.; Karakas, Sidika E.] Univ Calif Davis, Med Ctr, Dept Internal Med, Div Endocrinol Diabet & Metab, Sacramento, CA 95817 USA.
[Comerford, Kevin B.; Knotts, Trina A.; Adams, Sean H.] Univ Calif Davis, Dept Nutr, Davis, CA 95616 USA.
[Fiehn, Oliver] Univ Calif Davis, West Coast Metabol Ctr, Davis, CA 95616 USA.
[Fiehn, Oliver] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
RP Adams, SH (reprint author), ARS, Obes & Metab Res Unit, USDA, Western Human Nutr Res Ctr, Davis, CA 95616 USA.
EM shadams@uams.edu
FU National Dairy Council; USDA-Agricultural Research Service
[5306-51530-019-00]; University of California, Davis, Clinical and
Translational Science Center Grant [RR024146]
FX Supported by a grant from the National Dairy Council administered by the
Dairy Research Institute (to SHA) and by a USDA-Agricultural Research
Service Headquarters Postdoctoral Fellowship (to BDP), intramural
USDA-Agricultural Research Service Project Plan 5306-51530-019-00, and
the University of California, Davis, Clinical and Translational Science
Center Grant (RR024146).
NR 53
TC 11
Z9 11
U1 0
U2 12
PU AMER SOC NUTRITION-ASN
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814 USA
SN 0022-3166
EI 1541-6100
J9 J NUTR
JI J. Nutr.
PD APR
PY 2015
VL 145
IS 4
BP 691
EP 700
DI 10.3945/jn.114.203943
PG 10
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA CE9RG
UT WOS:000352180500004
PM 25833773
ER
PT J
AU Olarte, RA
Worthington, CJ
Horn, BW
Moore, GG
Singh, R
Monacell, JT
Dorner, JW
Stone, EA
Xie, DY
Carbone, I
AF Olarte, Rodrigo A.
Worthington, Carolyn J.
Horn, Bruce W.
Moore, Geromy G.
Singh, Rakhi
Monacell, James T.
Dorner, Joe W.
Stone, Eric A.
Xie, De-Yu
Carbone, Ignazio
TI Enhanced diversity and aflatoxigenicity in interspecific hybrids of
Aspergillus flavus and Aspergillus parasiticus
SO MOLECULAR ECOLOGY
LA English
DT Article
DE allopolyploid; array comparative genome hybridization; flow cytometry;
meiosis; population
ID VEGETATIVE COMPATIBILITY GROUPS; POPULATION GENETIC-ANALYSIS; SEXUAL
REPRODUCTION; PARASEXUAL CYCLE; UNITED-STATES; AFLATOXIN B-1; A-TAMARII;
RECOMBINATION; CLUSTER; TREES
AB Aspergillus flavus and A.parasiticus are the two most important aflatoxin-producing fungi responsible for the contamination of agricultural commodities worldwide. Both species are heterothallic and undergo sexual reproduction in laboratory crosses. Here we examine the possibility of interspecific matings between A.flavus and A.parasiticus. These species can be distinguished morphologically and genetically, as well as by their mycotoxin profiles. Aspergillus flavus produces both B aflatoxins and cyclopiazonic acid (CPA), B aflatoxins or CPA alone, or neither mycotoxin; Aspergillus parasiticus produces B and G aflatoxins or the aflatoxin precursor O-methylsterigmatocystin, but not CPA. Only four of forty-five attempted interspecific crosses between opposite mating types of A.flavus and A.parasiticus were fertile and produced viable ascospores. Single ascospore strains from each cross were shown to be recombinant hybrids using multilocus genotyping and array comparative genome hybridization. Conidia of parents and their hybrid progeny were haploid and predominantly monokaryons and dikaryons based on flow cytometry. Multilocus phylogenetic inference showed that experimental hybrid progeny were grouped with naturally occurring A.flavus L strain and A.parasiticus. Higher total aflatoxin concentrations in some F1 progeny strains compared to midpoint parent aflatoxin levels indicate synergism in aflatoxin production; moreover, three progeny strains synthesized G aflatoxins that were not produced by the parents, and there was evidence of allopolyploidization in one strain. These results suggest that hybridization is an important diversifying force resulting in the genesis of novel toxin profiles in these agriculturally important fungi.
C1 [Olarte, Rodrigo A.; Worthington, Carolyn J.; Singh, Rakhi; Monacell, James T.; Carbone, Ignazio] N Carolina State Univ, Dept Plant Pathol, Ctr Integrated Fungal Res, Raleigh, NC 27695 USA.
[Horn, Bruce W.; Dorner, Joe W.] ARS, Natl Peanut Res Lab, USDA, Dawson, GA 39842 USA.
[Moore, Geromy G.] ARS, So Reg Res Ctr, USDA, New Orleans, LA 70179 USA.
[Monacell, James T.; Stone, Eric A.; Carbone, Ignazio] N Carolina State Univ, Bioinformat Res Ctr, Raleigh, NC 27695 USA.
[Stone, Eric A.] N Carolina State Univ, Dept Biol Sci, Raleigh, NC 27695 USA.
[Xie, De-Yu] N Carolina State Univ, Dept Plant & Microbial Biol, Raleigh, NC 27695 USA.
RP Carbone, I (reprint author), N Carolina State Univ, Dept Plant Pathol, Ctr Integrated Fungal Res, Box 7616, Raleigh, NC 27695 USA.
EM ignazio_carbone@ncsu.edu
RI Stone, Eric/Q-7840-2016
FU North Carolina Cooperative State Research, Education and Extension
Service [2008-34500-19396, 2010-34500-21676]; National Research
Initiative of the USDA Cooperative State Research, Education and
Extension Service [2005-35319-16126]; Agriculture and Food Research
Initiative Competitive Grants Program from the USDA National Institute
of Food and Agriculture (NIFA) [2013-68004-20359]; USDA National Needs
Fellowship [2008-38420-18743]; USDA-NIFA Predoctoral fellowship
[2012-67011-19689]; National Science Foundation's Dimensions of
Biodiversity (DoB) program [DEB-1046167]; University of North Carolina
General Administration under an award for High Performance Computing
(HPC) and Computational Sciences
FX We thank Milbra Schweikert and Travis Walk for their technical expertise
and Valerie K. Lapham for her assistance with the scanning electron
microscopy. Thanks also to Janet Dow for helping with the flow
cytometry. Funding is from the North Carolina Cooperative State
Research, Education and Extension Service, grant nos. 2008-34500-19396
and 2010-34500-21676 and the National Research Initiative of the USDA
Cooperative State Research, Education and Extension Service, grant no.
2005-35319-16126. This project was also supported by the Agriculture and
Food Research Initiative Competitive Grants Program grant no.
2013-68004-20359 from the USDA National Institute of Food and
Agriculture (NIFA). R. A. Olarte was supported by a USDA National Needs
Fellowship 2008-38420-18743 and by a USDA-NIFA Predoctoral fellowship,
grant no. 2012-67011-19689. We also thank the National Science
Foundation's Dimensions of Biodiversity (DoB) program for financial
support, DEB-1046167, to I. Carbone. This work was supported in part by
the University of North Carolina General Administration under an award
for High Performance Computing (HPC) and Computational Sciences. The
funders had no role in study design, data collection and analysis,
decision to publish or preparation of the manuscript.
NR 64
TC 3
Z9 3
U1 4
U2 20
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0962-1083
EI 1365-294X
J9 MOL ECOL
JI Mol. Ecol.
PD APR
PY 2015
VL 24
IS 8
BP 1889
EP 1909
DI 10.1111/mec.13153
PG 21
WC Biochemistry & Molecular Biology; Ecology; Evolutionary Biology
SC Biochemistry & Molecular Biology; Environmental Sciences & Ecology;
Evolutionary Biology
GA CF6AX
UT WOS:000352639900018
PM 25773520
ER
PT J
AU DeBlasio, SL
Johnson, R
Mahoney, J
Karasev, A
Gray, SM
MacCoss, MJ
Cilia, M
AF DeBlasio, Stacy L.
Johnson, Richard
Mahoney, Jaclyn
Karasev, Alexander
Gray, Stewart M.
MacCoss, Michael J.
Cilia, Michelle
TI Insights Into the Polerovirus-Plant Interactome Revealed by
Coimmunoprecipitation and Mass Spectrometry
SO MOLECULAR PLANT-MICROBE INTERACTIONS
LA English
DT Article
ID POTATO LEAFROLL-VIRUS; APHID TRANSMISSION; CAPSID PROTEIN; COAT PROTEIN;
INTERACTION NETWORKS; INTRINSIC DISORDER; VIRION STABILITY; DNA
METHYLATION; GENOME SEQUENCE; YELLOWS-VIRUS
AB Identification of host proteins interacting with the aphidborne Potato leafroll virus (PLRV) from the genus Polerovirus, family Luteoviridae, is a critical step toward understanding how PLRV and related viruses infect plants. However, the tight spatial distribution of PLRV to phloem tissues poses challenges. A polyclonal antibody raised against purified PLRV virions was used to coimmunoprecipitate virus-host protein complexes from Nicotiana benthamiana tissue inoculated with an infectious PLRV cDNA clone using Agrobacterium tumefaciens. A. tumefaciens-mediated delivery of PLRV enabled infection and production of assembled, insect-transmissible virus in most leaf cells, overcoming the dynamic range constraint posed by a systemically infected host. Isolated protein complexes were characterized using high-resolution mass spectrometry and consisted of host proteins interacting directly or indirectly with virions, as well as the nonincorporated readthrough protein (RTP) and three phosphorylated positional isomers of the RTP. A bioinformatics analysis using ClueGO and STRING showed that plant proteins in the PLRV protein interaction network regulate key biochemical processes, including carbon fixation, amino acid biosynthesis, ion transport, protein folding, and trafficking.
C1 [DeBlasio, Stacy L.; Mahoney, Jaclyn; Cilia, Michelle] Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA.
[DeBlasio, Stacy L.; Cilia, Michelle] USDA ARS, Ithaca, NY 14853 USA.
[Johnson, Richard; MacCoss, Michael J.] Univ Washington, Dept Genome Sci, Seattle, WA 98109 USA.
[Karasev, Alexander] Univ Idaho, Moscow, ID 83844 USA.
[Gray, Stewart M.; Cilia, Michelle] Cornell Univ, Dept Plant Pathol & Plant Microbe Biol, Ithaca, NY 14853 USA.
RP Cilia, M (reprint author), Cornell Univ, Boyce Thompson Inst Plant Res, Tower Rd, Ithaca, NY 14853 USA.
EM mlc68@cornell.edu
FU USDA NIFA [1907-22000-021-20]; Boyce Thompson Institute; NSF [1109989,
1354309]
FX We thank two anonymous reviewers for their critical feedback to improve
the manuscript, T. Greco and I. Cristea (Princeton) for helpful
discussion, K. Rivera at Cold Spring Harbor Laboratory for feedback on
methods, members of the Cilia lab for assistance with manually reviewing
the spectra derived from the modified peptides and providing comments on
the manuscript drafts, J. VanEe and J. Flaherty at Cornell University's
Institute for Biotechnology Bio-IT Facility for IT support, T. Hammond
(Cornell) for care of plants, G. Martin (Boyce Thompson Institute) for
access to the N. benthamiana genome sequencing data, and M. Srivastava
at the Boyce Thompson Institute Plant Cell Imaging Center for help with
imaging. Funding was provided by USDA NIFA grant 1907-22000-021-20, the
Boyce Thompson Institute, and NSF grants 1109989 and 1354309.
NR 96
TC 2
Z9 2
U1 4
U2 20
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0894-0282
EI 1943-7706
J9 MOL PLANT MICROBE IN
JI Mol. Plant-Microbe Interact.
PD APR
PY 2015
VL 28
IS 4
BP 467
EP 481
DI 10.1094/MPMI-11-14-0363-R
PG 15
WC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Plant Sciences
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Plant Sciences
GA CF8HI
UT WOS:000352796500009
PM 25496593
ER
PT J
AU Kim, W
Park, CM
Park, JJ
Akamatsu, HO
Peever, TL
Xian, M
Gang, DR
Vandemark, G
Chen, WD
AF Kim, Wonyong
Park, Chung-Min
Park, Jeong-Jin
Akamatsu, Hajime O.
Peever, Tobin L.
Xian, Ming
Gang, David R.
Vandemark, George
Chen, Weidong
TI Functional Analyses of the Diels-Alderase Gene sol5 of Ascochyta rabiei
and Alternaria solani Indicate that the Solanapyrone Phytotoxins Are Not
Required for Pathogenicity
SO MOLECULAR PLANT-MICROBE INTERACTIONS
LA English
DT Article
ID CHICKPEA CICER-ARIETINUM; DNA-POLYMERASE LAMBDA; ARABIDOPSIS-THALIANA;
DIDYMELLA-RABIEI; PHYTOPATHOGENIC FUNGUS; BLIGHT; IDENTIFICATION; TOXIN;
BIOSYNTHESIS; RESISTANCE
AB Ascochyta rabiei and Alternaria solani, the causal agents of Ascochyta blight of chickpea (Cicer arietinum) and early blight of potato (Solanum tuberosum), respectively, produce a set of phytotoxic compounds including solanapyrones A, B, and C. Although both the phytotoxicity of solanapyrones and their universal production among field isolates have been documented, the role of solanapyrones in pathogenicity is not well understood. Here, we report the functional characterization of the sol5 gene, which encodes a Diels-Alderase that catalyzes the final step of solanapyrone biosynthesis. Deletion of sol5 in both Ascochyta rabiei and Alternaria solani completely prevented production of solanapyrones and led to accumulation of the immediate precursor compound, prosolanapyrone II-diol, which is not toxic to plants. Deletion of sol5 did not negatively affect growth rate or spore production in vitro, and led to overexpression of the other solanapyrone biosynthesis genes, suggesting a possible feedback regulation mechanism. Phytotoxicity tests showed that solanapyrone A is highly toxic to several legume species and Arabidopsis thaliana. Despite the apparent phytotoxicity of solanapyrone A, pathogenicity tests showed that solanapyrone-minus mutants of Ascochyta rabiei and Alternaria solani were equally virulent as their corresponding wild-type progenitors, suggesting that solanapyrones are not required for pathogenicity.
C1 [Kim, Wonyong; Akamatsu, Hajime O.; Peever, Tobin L.; Vandemark, George; Chen, Weidong] Washington State Univ, Dept Plant Pathol, Pullman, WA 99164 USA.
[Park, Chung-Min; Xian, Ming] Washington State Univ, Dept Chem, Pullman, WA 99164 USA.
[Park, Jeong-Jin; Gang, David R.] Washington State Univ, Inst Biol Chem, Pullman, WA 99164 USA.
[Vandemark, George; Chen, Weidong] Washington State Univ, USDA ARS, Grain Legume Genet & Physiol Res Unit, Pullman, WA 99164 USA.
RP Chen, WD (reprint author), Washington State Univ, Dept Plant Pathol, Pullman, WA 99164 USA.
EM w-chen@wsu.edu
FU USDA Cool Season Food Legume Research Program; USA Dry Pea and Lentil
Council; National Science Foundation [DBI-1229749]
FX We thank R. Cella and G. Maga (University of Pavia, Italy) for kindly
providing Arabidopsis transgenic lines (POLLOE and
POLLKD), A. Vanden Wymelenberg (University of Wisconsin) and
D. Cullen (USDA Forest Service) for providing pTEFEGFP, H. Oikawa
(Hokkaido University) for providing solanapyrone A standard, and H. J.
Kim (Korea University) for valuable suggestions on solanapyrone
biochemistry. The research was funded, in part, by the USDA Cool Season
Food Legume Research Program and by the USA Dry Pea and Lentil Council.
Mass spectrometric analysis was performed on an instrument acquired
through a Major Research Instrumentation grant (DBI-1229749) from the
National Science Foundation to D. R. Gang.
NR 75
TC 5
Z9 5
U1 3
U2 17
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0894-0282
EI 1943-7706
J9 MOL PLANT MICROBE IN
JI Mol. Plant-Microbe Interact.
PD APR
PY 2015
VL 28
IS 4
BP 482
EP 496
DI 10.1094/MPMI-08-14-0234-R
PG 15
WC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Plant Sciences
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Plant Sciences
GA CF8HI
UT WOS:000352796500010
PM 25372118
ER
PT J
AU Dao, HT
Beattie, GAC
Rossman, AY
Burgess, LW
Holford, P
AF Hang Thi Dao
Beattie, G. Andrew C.
Rossman, Amy Y.
Burgess, Lester W.
Holford, Paul
TI Systematics and biology of two species of Microcera associated with
armoured scales on citrus in Australia
SO MYCOLOGICAL PROGRESS
LA English
DT Article
DE Diaspididae; Entomopathogen; Fusarium; Microcera; Nectria; Sphaerostilbe
ID DNA-SEQUENCE DATA; IDENTIFICATION; DIASPIDIDAE; HOMOPTERA; INSECTS;
FUNGI
AB Microcera coccophila has been regarded as an entomopathogen of armoured scales in Australia since the late 1800s. We confirmed its identity and presence in Australia using morphological and molecular data. We also confirmed that a related species, M. larvarum, is an entomopathogen of armoured scales in Australia. M. coccophila was recorded as a parasite of Aonidiella aurantii, A. citrina, Lepidosaphes beckii, L. gloverii and Unaspis citri in citrus orchards on the Central Coast of New SouthWales. We recorded M. larvarum in these orchards in association with A. aurantii and one or more hosts that could not be identified due to their condition. The sexual and asexual morphs of both species are described. Genetic variation suggested that the taxa could represent various phylogenetic species. We fulfilled Koch's postulates for both fungi in separate bioassays with Aspidiotus nerii. Infection was not dependent on the reproductive status of the scale. A laboratory study showed that Iridomyrmex rufoniger, a common ant in Australian citrus orchards, can passively disperse conidia of M. coccophila. Field observations suggested that the prevalence of the two fungal parasites in orchards is influenced by host scale densities, climate, and foraging by I. rufoniger workers on honeydew produced by their sternorrhynchan trophobionts, particularly Saissetia oleae. These foraging activities induced dense populations of A. aurantii by disrupting the activities of the scale's natural arthropod enemies; this was followed by epizootics of M. coccophila that decimated populations of the scale.
C1 [Hang Thi Dao] Plant Protect Res Inst, Hanoi, Vietnam.
[Beattie, G. Andrew C.; Holford, Paul] Univ Western Sydney, Penrith, NSW 2751, Australia.
[Rossman, Amy Y.] ARS, Systemat Mycol & Microbiol Lab, USDA, Beltsville, MD 20705 USA.
[Burgess, Lester W.] Univ Sydney, Fac Agr & Environm, Sydney, NSW 2006, Australia.
RP Dao, HT (reprint author), Plant Protect Res Inst, Hanoi, Vietnam.
EM daothihang@hotmail.com; a.beattie@uws.edu.au; Amy.Rossman@ars.usda.gov;
burgess.international@gmail.com; p.holford@uws.edu.au
FU AusAID scholarship
FX The study was undertaken as part of postgraduate studies funded by an
AusAID scholarship awarded to Dao Thi Hang. We thank the owners of study
orchards on the Central Coast of New South Wales: Ted and Sylvia Lister,
and Ross and Maureen Hitchcock at Kulnura, Max and Kevin Britten at
Somersby, Jeromy Wallis and Gerry Whitmont at Lower Portland, Bruce and
Phillip Gardiner at Cornwallis, and Deidre Hartog at Castlereagh. Ms
Sandra Hardy (formerly Industry Leader Citrus, New South Wales
Department of Primary Industries) is thanked for her enthusiastic
support and interest. Oleander scale cultures were established from
scale-infested butternut pumpkins kindly supplied by Dan Papacek, Bugs
for Bugs, Integrated Pest Management Pty Ltd, Mundubbera, QLD,
Australia. Typhlodromips montdorensis was also kindly supplied by Dan
Papacek.
NR 62
TC 1
Z9 1
U1 3
U2 7
PU SPRINGER HEIDELBERG
PI HEIDELBERG
PA TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY
SN 1617-416X
EI 1861-8952
J9 MYCOL PROG
JI Mycol. Prog.
PD APR
PY 2015
VL 14
IS 4
AR 17
DI 10.1007/s11557-015-1044-0
PG 14
WC Mycology
SC Mycology
GA CF7CY
UT WOS:000352715000002
ER
PT J
AU Huang, YB
Reddy, KN
Thomson, SJ
Yao, HB
AF Huang, Yanbo
Reddy, Krishna N.
Thomson, Steven J.
Yao, Haibo
TI Assessment of soybean injury from glyphosate using airborne
multispectral remote sensing
SO PEST MANAGEMENT SCIENCE
LA English
DT Article
DE soybean; glyphosate; crop injury; biological response; remote sensing;
vegetation index
ID VEGETATION INDEXES; AERIAL APPLICATION; ACID ACCUMULATION; SIMULATED
DRIFT; SPRAY DRIFT; CORN; GLUFOSINATE; MANAGEMENT; DEPOSITS; YIELD
AB BACKGROUND: Glyphosate drift onto off-target sensitive crops can reduce growth and yield and is of great concern to growers and pesticide applicators. Detection of herbicide injury using biological responses is tedious, so more convenient and rapid detection methods are needed. The objective of this research was to determine the effects of glyphosate on biological responses of non-glyphosate-resistant (non-GR) soybean and to correlate vegetation indices (Vls) derived from aerial multispectral imagery.
RESULTS: Plant height, shoot dry weight and chlorophyll ((HI) content decreased gradually with increasing glyphosate rate, regardless of weeks after application (WAA). Accordingly, soybean yield decreased by 25% with increased rate from 0 to 0.866 kg Al ha(-1). Similarly to biological responses, the Vls derived from aerial imagery - normalized difference vegetation index, soil adjusted vegetation index, ratio vegetation index and green NDVI - also decreased gradually with increasing glyphosate rate, regardless of WAA.
CONCLUSION: The Vls were highly correlated with plant height and yield but poorly correlated with (HI, regardless of WAA. This indicated that indices could be used to determine soybean injury from glyphosate, as indicated by the difference in plant height, and to predict the yield reduction due to crop injury from glyphosate. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.
C1 [Huang, Yanbo; Reddy, Krishna N.; Thomson, Steven J.] ARS, USDA, Crop Prod Syst Res Unit, Stoneville, MS 38776 USA.
[Yao, Haibo] Mississippi State Univ, Geosyst Res Inst, Mississippi State, MS USA.
RP Huang, YB (reprint author), ARS, USDA, Crop Prod Syst Res Unit, 141 Expt Stn Rd, Stoneville, MS 38776 USA.
EM Yanbo.Huang@ars.usda.gov
NR 31
TC 2
Z9 2
U1 4
U2 16
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1526-498X
EI 1526-4998
J9 PEST MANAG SCI
JI Pest Manag. Sci.
PD APR
PY 2015
VL 71
IS 4
BP 545
EP 552
DI 10.1002/ps.3839
PG 8
WC Agronomy; Entomology
SC Agriculture; Entomology
GA CF4AX
UT WOS:000352491900009
PM 24889377
ER
PT J
AU Binning, RR
Coats, J
Kong, XX
Hellmich, RL
AF Binning, Rachel R.
Coats, Joel
Kong, Xiaoxiao
Hellmich, Richard L.
TI Susceptibility to Bt proteins is not required for Agrotis ipsilon
aversion to Bt maize
SO PEST MANAGEMENT SCIENCE
LA English
DT Article
DE event TC1507; event DAS-59122-7; larval movement; transgenic corn;
antixenosis; refuge
ID BLACK CUTWORM LEPIDOPTERA; FEEDING-BEHAVIOR; NOCTUIDAE; COTTON; INSECT;
LARVAE; ALLELOCHEMICALS; HABITUATION; CONSUMPTION; DETERRENT
AB BACKGROUND: Although Bacillus thuringiensis (Bt) maize has been widely adopted in diverse regions around the world, relatively little is known about the susceptibility and behavioral response of certain insect pests to Bt maize in countries where this maize is not currently cultivated. These are important factors to consider as management plans are developed. These factors were investigated for Agrotis ipsilon, a global pest of maize, with Cry1F and Cry34Ab1/Cry35Ab1 maize.
RESULTS: Agrotis ipsilon demonstrated an initial, post-ingestive aversive response to Cry1F maize. Development and mortality were also affected - survival on Cry1F maize tissue was 40% and weight gain of survivors of Cry1F exposure was significantly reduced. A post-ingestive aversive response was also seen for Cry34Ab1/Cry35Ab 1 maize; however, longer-term feeding, weight gain and survival were not affected.
CONCLUSION: Agrotis ipsilon showed aversion to both Bt treatments. Aversion to Cry34Ab1/Cry35Ab1 maize was unexpected because these proteins have no known insecticidal effect against Lepidoptera; however, results confirm that this aversion was temporary and did not affect growth or development. The Cry1F results suggest that A. ipsilon will abandon Cry1F maize in the field before any selection for resistance. These data support the use of refuge to delay Cry1F resistance development in A. ipsilon populations. (C) 2014 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
C1 [Binning, Rachel R.] DuPont Pioneer, Johnston, IA 50131 USA.
[Coats, Joel] Iowa State Univ, Dept Entomol, Ames, IA USA.
[Kong, Xiaoxiao] DuPont Pioneer, Ankeny, IA USA.
[Hellmich, Richard L.] Iowa State Univ, USDA, ARS, Ames, IA USA.
RP Binning, RR (reprint author), DuPont Pioneer, 7100 NW 62nd Ave,POB 1000, Johnston, IA 50131 USA.
EM rachel.binning@pioneer.com
NR 26
TC 1
Z9 1
U1 1
U2 14
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1526-498X
EI 1526-4998
J9 PEST MANAG SCI
JI Pest Manag. Sci.
PD APR
PY 2015
VL 71
IS 4
BP 601
EP 606
DI 10.1002/ps.3901
PG 6
WC Agronomy; Entomology
SC Agriculture; Entomology
GA CF4AX
UT WOS:000352491900016
PM 25186105
ER
PT J
AU Procter, AC
Gill, RA
Fay, PA
Polley, HW
Jackson, RB
AF Procter, Andrew C.
Gill, Richard A.
Fay, Philip A.
Polley, H. Wayne
Jackson, Robert B.
TI Soil carbon responses to past and future CO2 in three Texas prairie
soils
SO SOIL BIOLOGY & BIOCHEMISTRY
LA English
DT Article
DE Elevated CO2; Gradient; Grassland; Soil carbon; Decomposition; Soil type
ID ELEVATED ATMOSPHERIC CO2; WARM-TEMPERATE FOREST; ORGANIC-MATTER; DIOXIDE
ENRICHMENT; GRASSLAND SOILS; MICROBIAL COMMUNITY; SPECIES COMPOSITION;
NITROGEN; POOLS; PRODUCTIVITY
AB Changes in soil carbon storage could affect and be affected by rising atmospheric CO2. However, it is unlikely that soils will respond uniformly, as some soils are more sensitive to changes in the amount and chemistry of plant tissue inputs whereas others are less sensitive because of mineralogical, textural, or microbial processes. We studied soil carbon and microbial responses to a preindustrial-to-future CO2 gradient (250-500 ppm) in a grassland ecosystem in the field. The ecosystem contains three soil types with clay fractions of 15%-55%: a sandy loam Alfisol, a silty clay Mollisol, and a black clay Vertisol. Soil and microbial responses to atmospheric CO2 are plant-mediated; and aboveground plant productivity in this ecosystem increased linearly with CO2 in the sandy loam and silty clay. Although total soil organic carbon (SOC) did not change with CO2 treatment after four growing seasons, fast-cycling SOC pools increased with CO2 in the two clay soils. Microbial biomass increased 18% and microbial activity increased 30% across the CO2 gradient in the black clay (55% clay), but neither factor changed with CO2 in the sandy loam (15% clay). Similarly, size fractionation of SOC showed that coarse POM-C, the youngest and most labile fraction, increased four-fold across the CO2 gradient in the black clay, but increased by only 50% across the gradient in the sandy loam. Interestingly, mineral-associated C, the oldest and most recalcitrant fraction, declined 23% across the gradient in the third soil type, a silty clay (45% clay). Our results provide evidence for priming in this soil type, as labile C availability and decomposition rate (measured as soil respiration and soil C mineralization) also increased across the CO2 gradient in the silty clay soil. In summary, CO2 enrichment in this grassland increased the fast-cycling SOC pool as in other CO2 studies, but only in the two high-clay soils. Priming in the silty clay could limit SOC accumulation after prolonged CO2 exposure. Because soil texture varies geographically, including data on soil types could enhance predictions of soil carbon and microbial responses to future CO2 levels. (C) 2015 Elsevier Ltd. All rights reserved.
C1 [Procter, Andrew C.] Duke Univ, Dept Biol, Durham, NC 27708 USA.
[Gill, Richard A.] Brigham Young Univ, Dept Biol, Provo, UT 84602 USA.
[Fay, Philip A.; Polley, H. Wayne] USDA ARS, Grassland Soil & Water Res Lab, Temple, TX 76502 USA.
[Jackson, Robert B.] Duke Univ, Nicholas Sch Environm, Durham, NC 27708 USA.
[Jackson, Robert B.] Stanford Univ, Sch Earth Sci, Stanford, CA 94305 USA.
RP Procter, AC (reprint author), US EPA, ORISE, 109 TW Alexander Dr, Res Triangle Pk, NC 27711 USA.
EM acprocter@gmail.com
FU U.S. Department of Energy (Program in Ecosystem Research) [ER64242];
National Science Foundation (Graduate Research Fellowship Program);
Sigma Xi; U.S. Department of Agriculture
FX We thank John Kim and Sean Berthrong for their constructive criticism on
earlier drafts of this manuscript. Virginia Jin determined field
capacity of the soils used in the CO2 gradient, and provided
soil samples for testing. Alexia Kelley helped with the incubation
experiment and provided enzyme data. Chris Kolodziejczyk, Kyle liner,
and Katherine Jones operated CO2 chambers. This project was
supported by funding from the U.S. Department of Energy (Program in
Ecosystem Research no. ER64242), the National Science Foundation
(Graduate Research Fellowship Program), Sigma Xi, and the U.S.
Department of Agriculture. Mention of trade names or commercial products
in this publication does not imply recommendation or endorsement by the
U.S. Department of Agriculture. USDA is an equal opportunity provider
and employer.
NR 57
TC 3
Z9 3
U1 6
U2 42
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0038-0717
J9 SOIL BIOL BIOCHEM
JI Soil Biol. Biochem.
PD APR
PY 2015
VL 83
BP 66
EP 75
DI 10.1016/j.soilbio.2015.01.012
PG 10
WC Soil Science
SC Agriculture
GA CG1BA
UT WOS:000353006800009
ER
PT J
AU Stack, JC
Royaert, S
Gutierrez, O
Nagai, C
Holanda, ISA
Schnell, R
Motamayor, JC
AF Stack, J. Conrad
Royaert, Stefan
Gutierrez, Osman
Nagai, Chifumi
Araujo Holanda, Iona Santos
Schnell, Raymond
Motamayor, Juan-Carlos
TI Assessing microsatellite linkage disequilibrium in wild, cultivated, and
mapping populations of Theobroma cacao L. and its impact on association
mapping
SO TREE GENETICS & GENOMES
LA English
DT Article
DE Theobroma cacao; Linkage disequilibrium; Association mapping;
Haplotyping
ID MARKER-ASSISTED SELECTION; MISSING-DATA IMPUTATION; GENETIC DIVERSITY;
DOMESTICATION HISTORY; STATISTICAL-METHODS; GERMPLASM; INFERENCE;
TRAITS; FUTURE; INFORMATION
AB Linkage disequilibrium (LD) measured over the genomes of a species can provide important indications for how future association analyses should proceed. This information can be advantageous especially for slow-growing, perennial crops such as Theobroma cacao, where experimental crosses are inherently time-consuming and logistically expensive. While LD has been evaluated in cacao, previous work has been focused on relatively narrow genetic bases. We use microsatellite marker data collected from a uniquely diverse sample of individuals broadly covering both wild and cultivated varieties to gauge the LD present in the different cacao diversity groups and populations. We find that genome-wide LD decays far more rapidly in the wild and primitive diversity groups of cacao as compared to those representing cultivated varieties. The impact that such differences can have on association analyses is demonstrated using phenotypic data on pod color and genotypic data from two cacao populations with contrasting patterns of LD decay. Our results indicate that the more rapid LD decay in wild and primitive germplasm can lead to higher-resolution mapping intervals when compared to results from cultivated germplasm. Through simulations, we demonstrate how future association mapping analyses, comprising of cacao samples with a wild or primitive background, will likely exhibit lower LD and would be more suitable for fine-scale association mapping analyses. As many traits targeted by cacao breeders are found exclusively in wild and primitive germplasm, association mapping in wild cacao populations holds significant promise for cacao improvement through marker-assisted breeding and emphasize the need to further explore the natural diversity of Amazonian cacao.
C1 [Stack, J. Conrad; Schnell, Raymond; Motamayor, Juan-Carlos] Mars Inc, Mclean, VA 22101 USA.
[Royaert, Stefan] Mars Ctr Cocoa Sci, BR-45625000 Itajuipe, BA, Brazil.
[Gutierrez, Osman] USDA ARS, Subtrop Hort Res Stn, Miami, FL 33158 USA.
[Nagai, Chifumi] Hawaii Agr Res Ctr, Kunia, HI USA.
[Araujo Holanda, Iona Santos] Univ Fed Rural Semi Arido, Dept Ciencias Vegetais, BR-59625900 Mossoro, RN, Brazil.
RP Motamayor, JC (reprint author), Mars Inc, Mclean, VA 22101 USA.
EM juan.motamayor@effem.com
FU Mars, Incorporated
FX The funder (Mars, Incorporated) provided support in the form of salaries
for authors JCS, SR, RS and JCM, but did not have any additional role in
the study design, data collection and analysis, decision to publish, or
preparation of the manuscript. The specific roles of these authors are
articulated in the "Acknowledgement" section.
NR 65
TC 2
Z9 2
U1 3
U2 13
PU SPRINGER HEIDELBERG
PI HEIDELBERG
PA TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY
SN 1614-2942
EI 1614-2950
J9 TREE GENET GENOMES
JI Tree Genet. Genomes
PD APR
PY 2015
VL 11
IS 2
AR 19
DI 10.1007/s11295-015-0839-0
PG 16
WC Forestry; Genetics & Heredity; Horticulture
SC Forestry; Genetics & Heredity; Agriculture
GA CF8AP
UT WOS:000352777900015
ER
PT J
AU Jakes, JE
Hunt, CG
Yelle, DJ
Lorenz, L
Hirth, K
Gleber, SC
Vogt, S
Grigsby, W
Frihart, CR
AF Jakes, Joseph E.
Hunt, Christopher G.
Yelle, Daniel J.
Lorenz, Linda
Hirth, Kolby
Gleber, Sophie-Charlotte
Vogt, Stefan
Grigsby, Warren
Frihart, Charles R.
TI Synchrotron-based X-ray Fluorescence Microscopy in Conjunction with
Nanoindentation to Study Molecular-Scale Interactions of
Phenol-Formaldehyde in Wood Cell Walls
SO ACS APPLIED MATERIALS & INTERFACES
LA English
DT Article
DE X-ray fluorescence microscopy; nanoindentation; wood; adhesive;
infiltration
ID FIBER SATURATION POINT; PENETRATION; INTERPHASE; SHRINKAGE; RESIN
AB Understanding and controlling molecular-scale interactions between adhesives and wood polymers are critical to accelerate the development of improved adhesives for advanced wood-based materials. The submicrometer resolution of synchrotron-based X-ray fluorescence microscopy (XFM) was found capable of mapping and quantifying infiltration of Br-labeled phenolformaldehyde (BrPF) into wood cell walls. Cell wall infiltration of five BrPF adhesives with different average molecular weights (MWs) was mapped. Nanoindentation on the same cell walls was performed to assess the effects of BrPF infiltration on cell wall hygromechanical properties. For the same amount of weight uptake, lower MW BrPF adhesives were found to be more effective at decreasing moisture-induced mechanical softening. This greater effectiveness of lower MW phenolic adhesives likely resulted from their ability to more intimately associate with water sorption sites in the wood polymers. Evidence also suggests that a BrPF interpenetrating polymer network (IPN) formed within the wood polymers, which might also decrease moisture sorption by mechanically restraining wood polymers during swelling.
C1 [Jakes, Joseph E.; Hunt, Christopher G.; Yelle, Daniel J.; Lorenz, Linda; Frihart, Charles R.] US Forest Serv, Forest Biopolymers Sci & Engn, Forest Prod Lab, Madison, WI 53726 USA.
[Hirth, Kolby] US Forest Serv, Analyt Chem & Microscopy, Forest Prod Lab, Madison, WI 53726 USA.
[Gleber, Sophie-Charlotte; Vogt, Stefan] Argonne Natl Lab, Xray Sci Div, Argonne, IL 60439 USA.
[Grigsby, Warren] Scion, Rotorua 3010, New Zealand.
RP Jakes, JE (reprint author), US Forest Serv, Forest Biopolymers Sci & Engn, Forest Prod Lab, 1 Gifford Pinchot Dr, Madison, WI 53726 USA.
EM jjakes@fs.fed.us
RI Vogt, Stefan/B-9547-2009; Vogt, Stefan/J-7937-2013
OI Vogt, Stefan/0000-0002-8034-5513; Vogt, Stefan/0000-0002-8034-5513
FU U.S. Department of Energy, Basic Energy Sciences, Office of Science
[W-31-109-Eng-38]; FHA Cooperative Research Program for Covered Timber
Bridges; USDA Foreset Service PECASE Award
FX The use of Advanced Photon Source facilities was supported by the U.S.
Department of Energy, Basic Energy Sciences, Office of Science, under
contract number W-31-109-Eng-38. Partial funding was provided by the FHA
Cooperative Research Program for Covered Timber Bridges. J.E.J.
acknowledges funding from 2011 USDA Foreset Service PECASE Award.
NR 38
TC 9
Z9 9
U1 4
U2 20
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1944-8244
J9 ACS APPL MATER INTER
JI ACS Appl. Mater. Interfaces
PD APR 1
PY 2015
VL 7
IS 12
BP 6584
EP 6589
DI 10.1021/am5087598
PG 6
WC Nanoscience & Nanotechnology; Materials Science, Multidisciplinary
SC Science & Technology - Other Topics; Materials Science
GA CF0PM
UT WOS:000352246700028
PM 25756624
ER
PT J
AU Pekin, BK
Endress, BA
Wisdom, MJ
Naylor, BJ
Parks, CG
AF Pekin, Burak K.
Endress, Bryan A.
Wisdom, Michael J.
Naylor, Bridgett J.
Parks, Catherine G.
TI Impact of ungulate exclusion on understorey succession in relation to
forest management in the Intermountain Western United States
SO APPLIED VEGETATION SCIENCE
LA English
DT Article
DE Cattle; Conifer forest; Elk and deer herbivory; Grazing; Prescribed
burning; Stand thinning; Taxonomic dissimilarity
ID PLANT-SPECIES RICHNESS; TALLGRASS PRAIRIE; PRODUCTIVITY GRADIENT;
COMMUNITY STRUCTURE; GRAZING EXCLUSION; CLIMATE-CHANGE; PUBLIC LANDS;
ET-AL; VEGETATION; DIVERSITY
AB Questions: Do successional trajectories in plant diversity, heterogeneity and dominance respond differently to ungulate exclusion in unmanaged forests vs managed forests that are thinned and burned? Is vegetation in recently thinned and burned stands more sensitive to changes in the grazing regime?
Location: Northeast OR, USA.
Methods: We evaluated changes in plant community composition, diversity, heterogeneity and dominance under herbivory by multiple ungulates (cattle, elk, deer) vs ungulate exclusion at sites where trees were recently thinned and a prescribed burn was applied (managed), and in sites that were not thinned or burned in over 40 yr (unmanaged). Plant species diversity was calculated with the Simpsons index and richness as the total number of plant species. We estimated changes in plant community heterogeneity using a measure of taxonomic dissimilarity. Plant dominance was measured as the relative evenness among different plant functional groups (annual and perennial forbs and graminoids, and shrubs, subshrubs and trees).
Results: As expected, managed sites displayed more early succession species, such as annual forbs and annual graminoids, while unmanaged sites were dominated by late-succession species such as shrubs, subshrubs and trees. Species richness, particularly of annuals, was strongly reduced when ungulates were excluded from managed sites, and to a lesser extent from unmanaged sites for some perennial plant species. Species diversity decreased to a slightly greater extent with ungulate exclusion at managed sites. Species dominance was not influenced by ungulate exclusion. The effect of ungulate exclusion on plant heterogeneity also depended on forest management. Heterogeneity increased at managed sites and decreased in unmanaged sites with ungulate exclusion. Overall, the change in vegetation composition over time increased with the exclusion of ungulates, particularly at managed sites.
Conclusions: The strength and direction of specific vegetation and diversity responses to ungulate exclusion vary with forest management, and the influence of ungulate exclusion on plant succession is more pronounced in recently thinned and burned sites. Management of wild and domestic ungulates thus needs to account for forest management activities that alter vegetation seral stage and increase the sensitivity of vegetation to the ungulate grazing regime.
C1 [Pekin, Burak K.; Endress, Bryan A.] San Diego Zoo Global, Div Appl Plant Ecol, Inst Conservat Res, Escondido, CA 92027 USA.
[Endress, Bryan A.] Oregon State Univ, Dept Anim & Rangeland Sci, Eastern Oregon Agr & Nat Resource Program, La Grande, OR 97850 USA.
[Wisdom, Michael J.; Naylor, Bridgett J.; Parks, Catherine G.] US Forest Serv, Pacific NW Res Stn, USDA, La Grande, OR 97850 USA.
RP Pekin, BK (reprint author), San Diego Zoo Global, Div Appl Plant Ecol, Inst Conservat Res, Escondido, CA 92027 USA.
EM bpekin@sandiegozoo.org; bryan.endress@oregonstate.edu;
mwisdom@fs.fed.us; bnaylor@fs.fed.us; cparks01@fs.fed.us
FU USDA Forest Service Pacific Northwest Research Station, Oregon State
University; San Diego Zoo Institute for Conservation Research
FX We thank Kent Coe and summer technicians at the Pacific Northwest
Research Station in La Grande for their contribution to vegetation
sampling and data collection. We also thank Jen Hafer for support in
data management over the course of the study. Research was funded by the
USDA Forest Service Pacific Northwest Research Station, Oregon State
University, and San Diego Zoo Institute for Conservation Research.
NR 47
TC 2
Z9 2
U1 7
U2 39
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1402-2001
EI 1654-109X
J9 APPL VEG SCI
JI Appl. Veg. Sci.
PD APR
PY 2015
VL 18
IS 2
BP 252
EP 260
DI 10.1111/avsc.12145
PG 9
WC Plant Sciences; Ecology; Forestry
SC Plant Sciences; Environmental Sciences & Ecology; Forestry
GA CE8ZA
UT WOS:000352131500010
ER
PT J
AU Belval, EJ
Wei, Y
Bevers, M
AF Belval, Erin J.
Wei, Yu
Bevers, Michael
TI A mixed integer program to model spatial wildfire behavior and
suppression placement decisions
SO CANADIAN JOURNAL OF FOREST RESEARCH
LA English
DT Article
DE wildfire growth; wildfire suppression; optimization; fireline intensity
ID STANDARD RESPONSE MODEL; FIRE SPREAD; CONTAINMENT; MANAGEMENT;
ALLOCATION; RESOURCES; TACTICS
AB Wildfire suppression combines multiple objectives and dynamic fire behavior to form a complex problem for decision makers. This paper presents a mixed integer program designed to explore integrating spatial fire behavior and suppression placement decisions into a mathematical programming framework. Fire behavior and suppression placement decisions are modeled using nodes associated with cell centers from raster landscapes. The nodes at which suppression is located are determined by control variables. Response variables include fire spread paths, arrival times, and fireline intensities for each node. Both fire arrival times and fireline intensities are necessary to address ecological objectives and fire control. Test cases for this model provide examples of fire behavior interacting with suppression placement to achieve multiple objectives.
C1 [Belval, Erin J.; Wei, Yu] Colorado State Univ, Dept Forest & Rangeland Stewardship, Ft Collins, CO 80523 USA.
[Bevers, Michael] US Forest Serv, USDA, Rocky Mt Res Stn, Ft Collins, CO 80526 USA.
RP Belval, EJ (reprint author), Colorado State Univ, Dept Forest & Rangeland Stewardship, Ft Collins, CO 80523 USA.
EM erin.belval@colostate.edu
FU USDA Forest Service Rocky Mountain Research Station
[11-JV-11221636-146]; Colorado State University [11-JV-11221636-146]
FX This research was supported by Joint Venture Agreement
11-JV-11221636-146 between the USDA Forest Service Rocky Mountain
Research Station and Colorado State University. The authors thank the
Associate Editor and the referees for insightful suggestions that
significantly improved this paper.
NR 31
TC 2
Z9 2
U1 5
U2 12
PU CANADIAN SCIENCE PUBLISHING, NRC RESEARCH PRESS
PI OTTAWA
PA 65 AURIGA DR, SUITE 203, OTTAWA, ON K2E 7W6, CANADA
SN 0045-5067
EI 1208-6037
J9 CAN J FOREST RES
JI Can. J. For. Res.
PD APR
PY 2015
VL 45
IS 4
BP 384
EP 393
DI 10.1139/cjfr-2014-0252
PG 10
WC Forestry
SC Forestry
GA CF0DX
UT WOS:000352214100002
ER
PT J
AU Fekety, PA
Falkowski, MJ
Hudak, AT
AF Fekety, Patrick A.
Falkowski, Michael J.
Hudak, Andrew T.
TI Temporal transferability of LiDAR-based imputation of forest inventory
attributes
SO CANADIAN JOURNAL OF FOREST RESEARCH
LA English
DT Article
DE repeated LiDAR acquisitions; imputation; forest inventory; aboveground
carbon; change detection
ID NEAREST-NEIGHBOR IMPUTATION; AIRBORNE LASER SCANNER; BASAL-AREA;
ACCURACY; USA; ELEVATION; DIAMETER; UTILITY; BIOMASS; IMAGERY
AB Forest inventory and planning decisions are frequently informed by LiDAR data. Repeated LiDAR acquisitions offer an opportunity to update forest inventories and potentially improve forest inventory estimates through time. We leveraged repeated LiDAR and ground measures for a study area in northern Idaho, U.S.A., to predict (via imputation)-across both space and time-four forest inventory attributes: aboveground carbon (AGC), basal area (BA), stand density index (SDI), and total stem volume (Vol). Models were independently developed from 2003 and 2009 LiDAR datasets to spatially predict response variables at both times. Annual rates of change were calculated by comparing response variables between the two collections. Additionally, a pooled model was built by combining reference observations from both years to test if imputation can be performed across measurement dates. The R-2 values for the pooled model were 0.87, 0.90, 0.89, and 0.87 for AGC, BA, SDI, and Vol, respectively. Mapping response variables at the landscape level demonstrates that the relationship between field data and LiDAR metrics holds true even though the data were collected in different years. Pooling data across time increases the number of reference observations available to resource managers and may ultimately improve inventory predictions.
C1 [Fekety, Patrick A.; Falkowski, Michael J.] Univ Minnesota, Dept Forest Resources, St Paul, MN 55108 USA.
[Hudak, Andrew T.] US Forest Serv, USDA, Rocky Mt Res Stn, Moscow, ID 83843 USA.
RP Fekety, PA (reprint author), Univ Minnesota, Dept Forest Resources, 1530 Cleveland Ave N, St Paul, MN 55108 USA.
EM pafekety@umn.edu
FU NASA [NNX14AC26G]; Agenda 2020 Program; Big Sky Carbon Sequestration
Partnership Program; Potlatch Forest Holdings, Inc.; Bennett Lumber
Products, Inc.
FX This research was primarily funded by the NASA New Investigator Program
via grant NNX14AC26G to Michael Falkowski at the University of
Minnesota. We acknowledge additional support from the Agenda 2020 and
Big Sky Carbon Sequestration Partnership Programs, Potlatch Forest
Holdings, Inc., and Bennett Lumber Products, Inc. for funding LiDAR data
collections or processing. We thank the four anonymous reviewers and the
Associate Editor for their comments, which improved this article.
Finally, we also thank Nicholas Crookston for his assistance with
yaImpute.
NR 53
TC 5
Z9 5
U1 3
U2 7
PU CANADIAN SCIENCE PUBLISHING, NRC RESEARCH PRESS
PI OTTAWA
PA 65 AURIGA DR, SUITE 203, OTTAWA, ON K2E 7W6, CANADA
SN 0045-5067
EI 1208-6037
J9 CAN J FOREST RES
JI Can. J. For. Res.
PD APR
PY 2015
VL 45
IS 4
BP 422
EP 435
DI 10.1139/cjfr-2014-0405
PG 14
WC Forestry
SC Forestry
GA CF0DX
UT WOS:000352214100006
ER
PT J
AU Borgman, EM
Schoettle, AW
Angert, AL
AF Borgman, Erin M.
Schoettle, Anna W.
Angert, Amy L.
TI Assessing the potential for maladaptation during active management of
limber pine populations: a common garden study detects genetic
differentiation in response to soil moisture in the Southern Rocky
Mountains
SO CANADIAN JOURNAL OF FOREST RESEARCH
LA English
DT Article
DE common garden; genetic differentiation; limber pine; Pinus flexilis;
white pine blister rust
ID WATER-USE EFFICIENCY; CARBON-ISOTOPE DISCRIMINATION; FLEXILIS PINACEAE;
BLISTER RUST; PHOTOSYNTHESIS; PLANTS; RANGE; AVAILABILITY; CONDUCTANCE;
PATTERNS
AB Active management is needed to sustain healthy limber pine (Pinus flexilis E. James) forests in the Southern Rocky Mountains (henceforth, Southern Rockies), as they are threatened by the interaction of the mountain pine beetle (Dendroctonus ponderosae Hopkins) epidemic, climate change, and the spread of the non-native pathogen that causes white pine blister rust disease (Cronartium ribicola A. Dietr.). Appropriate source material for restoration and proactive introduction needs to be selected, taking into account potential genetic differentiation that would hamper management success. We conducted a common garden study in a greenhouse to determine the degree of genetic differentiation among limber pine populations in the Southern Rockies. We evaluated the differential responses of populations from northern and southern portions of the Southern Rockies to different moisture regimes during early seedling growth by measuring primary needle length, stem diameter, water potential, biomass allocation between root and shoot, and carbon isotope ratios (delta C-13; a proxy for water-use efficiency). There were significant (p < 0.05) effects of source region for root length, stem diameter, needle length, and total dry mass, with seedlings from southern sources bigger than seedlings from northern sources. Furthermore, there was a marginally significant interaction between soil moisture regime and source region for carbon isotope ratio (p = 0.0778), suggesting possible local adaptation. These data indicate that genetic differentiation exists among populations in the Southern Rockies, potentially increasing the risk of maladaptation when moving seed far from its source for active management.
C1 [Borgman, Erin M.; Schoettle, Anna W.; Angert, Amy L.] Colorado State Univ, Grad Degree Program Ecol, Ft Collins, CO 80523 USA.
[Schoettle, Anna W.] US Forest Serv, USDA, Rocky Mt Res Stn, Ft Collins, CO 80526 USA.
[Angert, Amy L.] Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada.
[Angert, Amy L.] Univ British Columbia, Dept Zool, Vancouver, BC V6T 1Z4, Canada.
RP Schoettle, AW (reprint author), Colorado State Univ, Grad Degree Program Ecol, 1878 Campus Delivery, Ft Collins, CO 80523 USA.
EM aschoettle@fs.fed.us
OI Angert, Amy/0000-0003-3082-0133
FU USDA Forest Service Special Technology Development Program
[2012-R2-STDP-01]; Colorado State University Biology Department;
Colorado State University Graduate Degree Program in Ecology; USDA
Forest Service Arapaho and Roosevelt National Forests; USDA Forest
Service Rocky Mountain Research Station; Garden Club of America; Stavros
Fund
FX The authors thank Ruth Hufbauer and David Steingraeber for comments on
an earlier draft, L. Scott Baggett and Benjamin Bird for assistance with
statistical analyses, and those who helped with field and greenhouse
work: Amber Weimer, Molly Wiebush, Sophia Sueck, Matthew Nelson, Tyler
Sabo, and Aaron Unroe. Funding was provided by USDA Forest Service
Special Technology Development Program (award 2012-R2-STDP-01), Colorado
State University Biology Department, Colorado State University Graduate
Degree Program in Ecology, USDA Forest Service Arapaho and Roosevelt
National Forests, USDA Forest Service Rocky Mountain Research Station,
Garden Club of America, and the Stavros Fund.
NR 47
TC 2
Z9 2
U1 2
U2 13
PU CANADIAN SCIENCE PUBLISHING, NRC RESEARCH PRESS
PI OTTAWA
PA 65 AURIGA DR, SUITE 203, OTTAWA, ON K2E 7W6, CANADA
SN 0045-5067
EI 1208-6037
J9 CAN J FOREST RES
JI Can. J. For. Res.
PD APR
PY 2015
VL 45
IS 4
BP 496
EP 505
DI 10.1139/cjfr-2014-0399
PG 10
WC Forestry
SC Forestry
GA CF0DX
UT WOS:000352214100014
ER
PT J
AU Rajamohan, A
Rinehart, JP
Leopold, RA
AF Rajamohan, Arun
Rinehart, Joseph P.
Leopold, Roger A.
TI Stage selection and restricted oviposition period improves
cryopreservation of dipteran embryos
SO CRYOBIOLOGY
LA English
DT Article
DE Cryopreservation; Diptera; Musca; Lucilia; Embryo; Vitrification; Stage
selection; Cryobanking
ID TERM COLD-STORAGE; DROSOPHILA EMBRYOS; MUSCIDAE EMBRYOS; CALLIPHORIDAE;
VITRIFICATION; SURVIVAL
AB Embryos of two dipteran species (Musca domestica and Lucilia sericata) were assessed for an effective sampling time that would result in the highest post-cryopreservation hatch rate, with a primary goal to define species-specific egg collection periods and the effects of manual stage selection on post cryopreservation yield. The effects of the time taken to collect eggs on, (a) the proportion of embryos reaching a specific developmental stage between 17 and 20 h of development, and (b) the post-cryopreservation hatch rate were assessed. Permeabilization treatment applied at any stage of embryonic development did not significantly reduce embryo viability. Eggs collected over longer durations significantly reduced the number of embryos available in a specific developmental stage amenable to cryopreservation. Hatch percentage after cryopreservation of the embryos of M. domestica collected over a 60 min period was 10.7 +/- 8.7% compared to 31 +/- 5% for the eggs collected for just 15 min. Similarly, percent hatch in L. sericata resulted in 17.0 +/- 3.9 and <2% for 15 and 60 min samples, respectively. Significantly higher hatching rates were obtained for cryopreservation after manual selection of specific embryonic developmental stages from the dechorionated samples. Post-cryopreservation hatching rate for stage-selected M. domestica embryos was 86.5 +/- 5.5% compared to 33.3 +/- 4.5% for embryos staged only by an overall visual confirmation. In the case of L sericata, the hatching percentage was 79.0 +/- 11.1 for stage-selected embryos compared to 17.0 +/- 3.9% without individual selection. Published by Elsevier Inc.
C1 [Rajamohan, Arun] N Dakota State Univ, Sch Nat Resources & Sci, Dept Entomol, Fargo, ND 58108 USA.
[Rajamohan, Arun; Rinehart, Joseph P.; Leopold, Roger A.] USDA ARS, Biosci Res Lab, Fargo, ND 58102 USA.
RP Rajamohan, A (reprint author), USDA ARS, Biosci Res Lab, Fargo, ND 58102 USA.
EM arun.rajamohan@ars.usda.gov
FU United States Department of Agriculture - Agriculture Research Service
(USDA-ARS)
FX This study was funded in its entirety by the United States Department of
Agriculture - Agriculture Research Service (USDA-ARS).
NR 21
TC 0
Z9 0
U1 1
U2 12
PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0011-2240
EI 1090-2392
J9 CRYOBIOLOGY
JI Cryobiology
PD APR
PY 2015
VL 70
IS 2
BP 143
EP 149
DI 10.1016/j.cryobiol.2015.01.004
PG 7
WC Biology; Physiology
SC Life Sciences & Biomedicine - Other Topics; Physiology
GA CF6NR
UT WOS:000352673900009
PM 25625573
ER
PT J
AU van der Stel, AX
van Mourik, A
Heijmen-van Dijk, L
Parker, CT
Kelly, DJ
van de Lest, CHA
van Putten, JPM
Wosten, MMSM
AF van der Stel, Anne-Xander
van Mourik, Andries
Heijmen-van Dijk, Linda
Parker, Craig T.
Kelly, David J.
van de Lest, Chris H. A.
van Putten, Jos P. M.
Wosten, Marc M. S. M.
TI The Campylobacter jejuni RacRS system regulates fumarate utilization in
a low oxygen environment
SO ENVIRONMENTAL MICROBIOLOGY
LA English
DT Article
ID TRIMETHYLAMINE-N-OXIDE; ESCHERICHIA-COLI K-12; RESPONSIVE NARX-NARL;
GENE-EXPRESSION; SIGNAL-TRANSDUCTION; 2-COMPONENT SYSTEM;
PSEUDOMONAS-AERUGINOSA; HOST COLONIZATION; HISTIDINE KINASE; DEPENDENT
GROWTH
AB The natural environment of the human pathogen Campylobacter jejuni is the gastrointestinal tract of warm-blooded animals. In the gut, the availability of oxygen is limited; therefore, less efficient electron acceptors such as nitrate or fumarate are used by C. jejuni. The molecular mechanisms that regulate the activity of the highly branched respiratory chain of C. jejuni are still a mystery mainly because C. jejuni lacks homologues of transcription factors known to regulate energy metabolism in other bacteria. Here we demonstrate that dependent on the available electron acceptors the two-component system RacRS controls the production of fumarate from aspartate, as well as its transport and reduction to succinate. Transcription profiling, DNAse protection and functional assays showed that phosphorylated RacR binds to and represses at least five promoter elements located in front of genes involved in the uptake and synthesis of fumarate. The RacRS system is active in the presence of nitrate and trimethyl-amine-N-oxide under oxygen-limited conditions when fumarate is less preferred as an alternative electron acceptor. In the inactive state, RacRS allows utilization of fumarate for respiration. The unique C. jejuniRacRS regulatory system illustrates the disparate evolution of Campylobacter and aids the survival of this pathogen.
C1 [van der Stel, Anne-Xander; van Mourik, Andries; Heijmen-van Dijk, Linda; van Putten, Jos P. M.; Wosten, Marc M. S. M.] Univ Utrecht, Dept Infectious Dis & Immunol, NL-3584 CL Utrecht, Netherlands.
[van de Lest, Chris H. A.] Univ Utrecht, Dept Biochem & Cell Biol, NL-3584 CL Utrecht, Netherlands.
[Parker, Craig T.] ARS, Produce Safety & Microbiol Res Unit, USDA, Albany, CA 94710 USA.
[Kelly, David J.] Univ Sheffield, Dept Mol Biol & Biotechnol, Sheffield S10 2TN, S Yorkshire, England.
RP Wosten, MMSM (reprint author), Univ Utrecht, Dept Infectious Dis & Immunol, NL-3584 CL Utrecht, Netherlands.
EM M.Wosten@uu.nl
OI van de Lest, Chris H.A./0000-0003-2143-2825; van Putten,
Jos/0000-0002-4126-8172; Wosten, Marc/0000-0002-7464-7232
FU NWO-VIDI [917.66.330]; NWO-ECHO [711.012.007]; USDA Agricultural
Research Service CRIS [5325-42000-047]
FX This work was supported by NWO-VIDI Grant 917.66.330 and NWO-ECHO Grant
711.012.007 to M.M.S.M. Wosten. This project was supported partially by
USDA Agricultural Research Service CRIS Project 5325-42000-047.
NR 64
TC 4
Z9 4
U1 0
U2 3
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1462-2912
EI 1462-2920
J9 ENVIRON MICROBIOL
JI Environ. Microbiol.
PD APR
PY 2015
VL 17
IS 4
SI SI
BP 1049
EP 1064
DI 10.1111/1462-2920.12476
PG 16
WC Microbiology
SC Microbiology
GA CF4TP
UT WOS:000352545100012
PM 24707969
ER
PT J
AU Malmierca, MG
Barua, J
McCormick, SP
Izquierdo-Bueno, I
Cardoza, RE
Alexander, NJ
Hermosa, R
Collado, IG
Monte, E
Gutierrez, S
AF Malmierca, Monica G.
Barua, Javier
McCormick, Susan P.
Izquierdo-Bueno, Inmaculada
Cardoza, Rosa E.
Alexander, Nancy J.
Hermosa, Rosa
Collado, Isidro G.
Monte, Enrique
Gutierrez, Santiago
TI Novel aspinolide production by Trichoderma arundinaceum with a potential
role in Botrytis cinerea antagonistic activity and plant defence priming
SO ENVIRONMENTAL MICROBIOLOGY
LA English
DT Article
ID ABC TRANSPORTER; FUNCTIONAL-CHARACTERIZATION; ARABIDOPSIS-THALIANA;
GENES; TRICHOTHECENES; FUNGI; ERGOSTEROL; IDENTIFICATION; PATHOGENICITY;
ELICITATION
AB Harzianum A (HA), a trichothecene produced by Trichoderma arundinaceum, has recently been described to have antagonistic activity against fungal plant pathogens and to induce plant defence genes. In the present work, we have shown that a tri5 gene-disrupted mutant that lacks HA production overproduces two polyketides, aspinolides B and C, which were not detected in the wild-type strain. Furthermore, four new aspinolides (D-G) were characterized. These compounds confirm that a terpene-polyketide cross-pathway exists in T.arundinaceum, and they may be responsible for the antifungal activity and the plant sensitization effect observed with the tri5-disrupted mutant. In addition, the molecular changes involving virulence factors in the phytopathogenic fungus Botrytis cinerea 98 (Bc98) during interaction with T.arundinaceum were investigated. The expression of genes involved in the production of botrydial by Bc98 was relatively repressed by HA, whereas other virulence genes of this pathogen were induced by the presence of T.arundinaceum, for example atrB and pg1 which encode for an ABC transporter and endopolygalacturonase 1 respectively. In addition, the interaction with Bc98 significantly repressed the production of HA by T.arundinaceum, indicating that a bidirectional transcriptional regulation is established between these two antagonistic fungi.
C1 [Malmierca, Monica G.; Cardoza, Rosa E.; Gutierrez, Santiago] Univ Leon, Univ Sch Agr Engineers, Area Microbiol, Ponferrada 24400, Spain.
[Barua, Javier; Izquierdo-Bueno, Inmaculada; Collado, Isidro G.] Univ Cadiz, Fac Sci, Dept Organ Chem, Puerto Real, Spain.
[McCormick, Susan P.; Alexander, Nancy J.] ARS, Bacterial Foodborne Pathogen & Mycol Unit, USDA, Natl Ctr Agr Utilizat Res, Peoria, IL USA.
[Hermosa, Rosa; Monte, Enrique] Univ Salamanca, Dept Genet & Microbiol, Spanish Portuguese Ctr Agr Res CIALE, E-37008 Salamanca, Spain.
RP Gutierrez, S (reprint author), Univ Leon, Univ Sch Agr Engineers, Area Microbiol, Campus Ponferrada,Avda Astorga S-N, Ponferrada 24400, Spain.
EM s.gutierrez@unileon.es
RI Gutierrez, Santiago/H-6456-2015; Monte, Enrique/A-9008-2017; Hermosa,
Rosa/A-9409-2017; Gonzalez Collado, Isidro/G-5501-2015
OI Gutierrez, Santiago/0000-0001-6659-1390; Monte,
Enrique/0000-0002-0166-5181; Hermosa, Rosa/0000-0003-4758-5838;
Izquierdo Bueno Reina, Inmaculada Concepcion/0000-0001-8861-408X;
Gonzalez Collado, Isidro/0000-0002-8612-0593
FU MICINN [AGL2009-13431-C02]; MINECO [AGL2012-40041-C02,
AGL2012-39798-C02-01]; Junta de Castilla y Leon [LE125A12-2]; FPU
fellowship by the Spanish Ministry of Science and Innovation
[AP2007-02835]; ITAIPU Binacional (Paraguay)
FX This research was supported by grants from MICINN (AGL2009-13431-C02)
and MINECO (AGL2012-40041-C02 and AGL2012-39798-C02-01) and from Junta
de Castilla y Leon (LE125A12-2). M. G. Malmierca was granted a FPU
fellowship by the Spanish Ministry of Science and Innovation
(AP2007-02835). J. Barua is grateful to ITAIPU Binacional (Paraguay) for
his research fellowship. We thank Ulf Thrane from the Technical
University of Denmark for kindly providing the T. arundinaceum IBT 40837
strain. Use of NMR and mass spectrometry (QTOF) facilities at the
Servicio Centralizado de Ciencia y Tecnologia (SCCYT) of the University
of Cadiz is acknowledged.
NR 42
TC 10
Z9 10
U1 1
U2 15
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1462-2912
EI 1462-2920
J9 ENVIRON MICROBIOL
JI Environ. Microbiol.
PD APR
PY 2015
VL 17
IS 4
SI SI
BP 1103
EP 1118
DI 10.1111/1462-2920.12514
PG 16
WC Microbiology
SC Microbiology
GA CF4TP
UT WOS:000352545100016
PM 24889745
ER
PT J
AU Westfall, J
AF Westfall, James
TI Spatial-scale considerations for a large-area forest inventory
regression model
SO FORESTRY
LA English
DT Article
ID UNITED-STATES; GROWTH; TREES; PINE
AB Numerous statistical models are employed when processing forest inventory data. These models primarily provide predicted values for attributes that are difficult and/or time-consuming to measure. In some applications, models are applied across a large geographic area, which assumes the relationship between the response variable and predictors is constant within the area. The extent to which this assumption holds for a tree height prediction model was evaluated at regional, ecoprovince and ecosection scales in the northeastern US. Two nonlinear regression models were tested, a spatially ambiguous model that utilized tree and stand-level predictors, and a spatially explicit model that incorporated latitude, longitude and elevation as predictors. When the regional-scale models were evaluated at the state level, both showed considerable bias for some states, which suggests that the statistical significance of spatial predictor variables does not translate into effective accounting for spatial variability. Similar results were obtained when fitting the model to an ecoprovince and evaluating bias within ecosections. Finally, fitting the model to ecosections within the ecoprovince provided a moderate level of local robustness as assessed by Moran's I statistic; however, there are cases where local biases may still exist. This outcome suggests that models should be developed and applied at small spatial scales to reduce local biases when model predictions are aggregated to larger geographic domains. Alternatively, more advanced modelling techniques may be more effective at addressing local variability using a single model having large-area application. However, the practicality of implementing these more complex techniques in the context of continuous large-area forest inventories is not well understood and should be fully explored prior to operational employment.
C1 US Forest Serv, No Res Stn, Newtown Sq, PA 19073 USA.
RP Westfall, J (reprint author), US Forest Serv, No Res Stn, 11 Campus Blvd,Suite 200, Newtown Sq, PA 19073 USA.
EM jameswestfall@fs.fed.us
FU US Forest Service, Northern Research Station, Forest Inventory and
Analysis Program
FX This work was funded by the US Forest Service, Northern Research
Station, Forest Inventory and Analysis Program.
NR 30
TC 1
Z9 1
U1 0
U2 3
PU OXFORD UNIV PRESS
PI OXFORD
PA GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
SN 0015-752X
EI 1464-3626
J9 FORESTRY
JI Forestry
PD APR
PY 2015
VL 88
IS 2
BP 267
EP 274
DI 10.1093/forestry/cpv001
PG 8
WC Forestry
SC Forestry
GA CF0BC
UT WOS:000352206500011
ER
PT J
AU Pejchar, L
Reed, SE
Bixler, P
Ex, L
Mockrin, MH
AF Pejchar, Liba
Reed, Sarah E.
Bixler, Patrick
Ex, Lindsay
Mockrin, Miranda H.
TI Consequences of residential development for biodiversity and human
well-being
SO FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
LA English
DT Review
ID LAND-USE; CONSERVATION DEVELOPMENT; URBANIZATION; ENVIRONMENT; PATTERNS;
TRENDS; LANDSCAPE; DYNAMICS; BENEFITS; ECOLOGY
AB Residential development is a leading driver of land-use change, with important implications for biodiversity, ecosystem processes, and human well-being. We reviewed over 500 published scientific articles on the biophysical, economic, and social effects of residential development and open space in the US. We concluded that current knowledge of the effects of this type of development on social and natural systems is inadequate for achieving key objectives of sustainability, including a viable environment, a robust economy, and an equitable society. Most biophysical studies measured species-or population-level responses to development, rather than attempting to understand the mechanisms underlying these responses or the associated ecosystem processes. Economic and social studies were biased toward assessing the values and benefits to individual people, with little attention given to community-level effects. Of the small number of interdisciplinary studies - less than 3% of the total examined - many reported that development patterns with positive biophysical or economic outcomes were perceived negatively from a social perspective. As a result, we propose a research and action agenda that moves beyond current areas of specialization to design and maintain sustainable communities in an increasingly developed world.
C1 [Pejchar, Liba; Reed, Sarah E.] Colorado State Univ, Dept Fish Wildlife & Conservat Biol, Ft Collins, CO 80523 USA.
[Reed, Sarah E.] Wildlife Conservat Soc, North Amer Program, Bozeman, MT USA.
[Bixler, Patrick] Univ Oregon, Inst Sustainable Environm, Ecosyst Workforce Program, Eugene, OR 97403 USA.
[Ex, Lindsay] City Ft Collins, Ft Collins, CO USA.
[Mockrin, Miranda H.] US Forest Serv, Human Dimens Program, Rocky Mt Res Stn, Ft Collins, CO USA.
RP Pejchar, L (reprint author), Colorado State Univ, Dept Fish Wildlife & Conservat Biol, Ft Collins, CO 80523 USA.
EM liba.pejchar@colostate.edu
FU CSU's School of Global Environmental Sustainability; US Forest Service
Rocky Mountain Research Station
FX We thank the members of the Conservation Development Global Challenges
Research Team at Colorado State University (CSU) for lively discussions
that stimulated this review. This work was funded by CSU's School of
Global Environmental Sustainability, and a Research Joint Venture
Agreement with the US Forest Service Rocky Mountain Research Station.
NR 47
TC 5
Z9 5
U1 4
U2 48
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 1540-9295
EI 1540-9309
J9 FRONT ECOL ENVIRON
JI Front. Ecol. Environ.
PD APR
PY 2015
VL 13
IS 3
BP 146
EP 153
DI 10.1890/140227
PG 8
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA CF0BW
UT WOS:000352208500017
ER
PT J
AU Lopez-Cruz, M
Crossa, J
Bonnett, D
Dreisigacker, S
Poland, J
Jannink, JL
Singh, RP
Autrique, E
de los Campos, G
AF Lopez-Cruz, Marco
Crossa, Jose
Bonnett, David
Dreisigacker, Susanne
Poland, Jesse
Jannink, Jean-Luc
Singh, Ravi P.
Autrique, Enrique
de los Campos, Gustavo
TI Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker x
Environment Interaction Genomic Selection Model
SO G3-GENES GENOMES GENETICS
LA English
DT Article
DE genomic selection; multienvironment; genomic best linear unbiased
prediction (GBLUP); marker x environment interaction; International
Bread Wheat Screening Nursery; GenPred; shared data resource
ID DENSE MOLECULAR MARKERS; MIXED-MODEL; GENETIC COVARIANCES; QUANTITATIVE
TRAITS; ENABLED PREDICTION; REGRESSION-MODELS; GENOTYPE; QTL; VALUES;
PLANT
AB Genomic selection (GS) models use genome-wide genetic information to predict genetic values of candidates of selection. Originally, these models were developed without considering genotype x environment interaction( GxE). Several authors have proposed extensions of the single-environment GS model that accommodate GxE using either covariance functions or environmental covariates. In this study, we model GxE using a marker x environment interaction (MxE) GS model; the approach is conceptually simple and can be implemented with existing GS software. We discuss how the model can be implemented by using an explicit regression of phenotypes on markers or using co-variance structures (a genomic best linear unbiased prediction-type model). We used the MxE model to analyze three CIMMYT wheat data sets (W1, W2, and W3), where more than 1000 lines were genotyped using genotyping-by-sequencing and evaluated at CIMMYT's research station in Ciudad Obregon, Mexico, under simulated environmental conditions that covered different irrigation levels, sowing dates and planting systems. We compared the MxE model with a stratified (i.e., within-environment) analysis and with a standard (across-environment) GS model that assumes that effects are constant across environments (i.e., ignoring GxE). The prediction accuracy of the MxE model was substantially greater of that of an across-environment analysis that ignores GxE. Depending on the prediction problem, the MxE model had either similar or greater levels of prediction accuracy than the stratified analyses. The MxE model decomposes marker effects and genomic values into components that are stable across environments (main effects) and others that are environment-specific (interactions). Therefore, in principle, the interaction model could shed light over which variants have effects that are stable across environments and which ones are responsible for GxE. The data set and the scripts required to reproduce the analysis are publicly available as Supporting Information.
C1 [Lopez-Cruz, Marco] Michigan State Univ, Dept Plant Soil & Microbial Sci, E Lansing, MI USA.
[Crossa, Jose; Bonnett, David; Dreisigacker, Susanne; Singh, Ravi P.; Autrique, Enrique] Int Maize & Wheat Improvement Ctr CIMMYT, Mexico City, DF, Mexico.
[Poland, Jesse] Kansas State Univ, Wheat Genet Resource Ctr, Dept Plant Pathol, Manhattan, KS 66506 USA.
[Poland, Jesse] Kansas State Univ, Dept Agron, Manhattan, KS 66506 USA.
[Jannink, Jean-Luc] Cornell Univ, USDA, ARS, Ithaca, NY 14853 USA.
[Jannink, Jean-Luc] Cornell Univ, Dept Plant Breeding & Genet, Ithaca, NY 14853 USA.
[de los Campos, Gustavo] Michigan State Univ, Epidemiol & Biostat Dept, E Lansing, MI 48824 USA.
[de los Campos, Gustavo] Michigan State Univ, Dept Stat, E Lansing, MI 48824 USA.
RP de los Campos, G (reprint author), Univ Alabama Birmingham, Dept Biostat, 327L Ryals Publ Hlth Bldg,1665 Univ Blvd, Birmingham, AL 35294 USA.
EM gcampos@uab.edu
FU Bill and Melinda Gates Foundation; NIH [GM099992, GM101219]
FX We thank CIMMYT's Global Wheat Program that performed the experiments
and collected the data analyzed in this study. We acknowledge the
financial support provided to CIMMYT and Cornell University by the Bill
and Melinda Gates Foundation. GDLC has received financial support from
NIH grants GM099992 and GM101219.
NR 32
TC 22
Z9 22
U1 8
U2 41
PU GENETICS SOCIETY AMERICA
PI BETHESDA
PA 9650 ROCKVILLE AVE, BETHESDA, MD 20814 USA
SN 2160-1836
J9 G3-GENES GENOM GENET
JI G3-Genes Genomes Genet.
PD APR 1
PY 2015
VL 5
IS 4
BP 569
EP 582
DI 10.1534/g3.114.016097
PG 14
WC Genetics & Heredity
SC Genetics & Heredity
GA CF1GR
UT WOS:000352293000010
PM 25660166
ER
PT J
AU VanBuren, R
Zeng, FC
Chen, CX
Zhang, JS
Wai, CM
Han, J
Aryal, R
Gschwend, AR
Wang, JP
Na, JK
Huang, LX
Zhang, LM
Miao, WJ
Gou, JQ
Arro, J
Guyot, R
Moore, RC
Wang, ML
Zee, F
Charlesworth, D
Moore, PH
Yu, QY
Ming, R
AF VanBuren, Robert
Zeng, Fanchang
Chen, Cuixia
Zhang, Jisen
Wai, Ching Man
Han, Jennifer
Aryal, Rishi
Gschwend, Andrea R.
Wang, Jianping
Na, Jong-Kuk
Huang, Lixian
Zhang, Lingmao
Miao, Wenjing
Gou, Jiqing
Arro, Jie
Guyot, Romain
Moore, Richard C.
Wang, Ming-Li
Zee, Francis
Charlesworth, Deborah
Moore, Paul H.
Yu, Qingyi
Ming, Ray
TI Origin and domestication of papaya Y-h chromosome
SO GENOME RESEARCH
LA English
DT Article
ID SEX-CHROMOSOME; POPULATION-STRUCTURE; SILENE-LATIFOLIA;
ARABIDOPSIS-THALIANA; CARICA-PAPAYA; EVOLUTION; SEQUENCE; ALIGNMENT;
PATTERNS; GENOME
AB Sex in papaya is controlled by a pair of nascent sex chromosomes. Females are XX, and two slightly different Y chromosomes distinguish males (XY) and hermaphrodites (XYh). The hermaphrodite-specific region of the Yh chromosome (HSY) and its X chromosome counterpart were sequenced and analyzed previously. We now report the sequence of the entire male-specific region of the Y (MSY). We used a BAC-by-BAC approach to sequence the MSY and resequence the Y regions of 24 wild males and the Y-h regions of 12 cultivated hermaphrodites. The MSY and HSY regions have highly similar gene content and structure, and only 0.4% sequence divergence. The MSY sequences from wild males include three distinct haplotypes, associated with the populations' geographic locations, but gene flow is detected for other genomic regions. The Y-h sequence is highly similar to one Y haplotype (MSY3) found only in wild dioecious populations from the north Pacific region of Costa Rica. The low MSY3-Y-h divergence supports the hypothesis that hermaphrodite papaya is a product of human domestication. We estimate that Y-h arose only similar to 4000 yr ago, well after crop plant domestication in Mesoamerica >6200 yr ago but coinciding with the rise of the Maya civilization. The Y-h chromosome has lower nucleotide diversity than the Y, or the genome regions that are not fully sex-linked, consistent with a domestication bottleneck. The identification of the ancestral MSY3 haplotype will expedite investigation of the mutation leading to the domestication of the hermaphrodite Y-h chromosome. In turn, this mutation should identify the gene that was affected by the carpel-suppressing mutation that was involved in the evolution of males.
C1 [VanBuren, Robert; Zhang, Jisen; Huang, Lixian; Zhang, Lingmao; Miao, Wenjing; Ming, Ray] Fujian Agr & Forestry Univ, FAFU & UIUC SIB Joint Ctr Genom & Biotechnol, Fuzhou 350002, Fujian, Peoples R China.
[VanBuren, Robert; Zeng, Fanchang; Chen, Cuixia; Wai, Ching Man; Han, Jennifer; Aryal, Rishi; Gschwend, Andrea R.; Wang, Jianping; Na, Jong-Kuk; Arro, Jie; Ming, Ray] Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA.
[Gou, Jiqing; Yu, Qingyi] Texas A&M Univ Syst, Dept Plant Pathol & Microbiol, Texas A&M AgriLife Res, Dallas, TX 75252 USA.
[Guyot, Romain] EVODYN, UMR DIADE, IRD, F-34394 Montpellier 5, France.
[Moore, Richard C.] Miami Univ, Dept Bot, Oxford, OH 45056 USA.
[Wang, Ming-Li; Moore, Paul H.] Hawaii Agr Res Ctr, Kunia, HI 96759 USA.
[Zee, Francis] USDA ARS, Pacific Basin Agr Res Ctr, Hilo, HI 96720 USA.
[Charlesworth, Deborah] Univ Edinburgh, Inst Evolutionary Biol, Edinburgh EH9 3JT, Midlothian, Scotland.
RP Ming, R (reprint author), Fujian Agr & Forestry Univ, FAFU & UIUC SIB Joint Ctr Genom & Biotechnol, Fuzhou 350002, Fujian, Peoples R China.
EM rming@life.uiuc.edu
FU National Science Foundation (NSF) Plant Genome Research Program
[DBI0553417, DBI-0922545]; Fujian Agriculture and Forestry University
FX This work was supported by National Science Foundation (NSF) Plant
Genome Research Program Awards DBI0553417 and DBI-0922545 (to R.M.,
Q.Y., R.C.M., and P.H.M.) and startup funds from Fujian Agriculture and
Forestry University to R.M.
NR 51
TC 14
Z9 15
U1 4
U2 24
PU COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT
PI COLD SPRING HARBOR
PA 1 BUNGTOWN RD, COLD SPRING HARBOR, NY 11724 USA
SN 1088-9051
EI 1549-5469
J9 GENOME RES
JI Genome Res.
PD APR
PY 2015
VL 25
IS 4
BP 524
EP 533
DI 10.1101/gr.183905.114
PG 10
WC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Genetics & Heredity
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Genetics & Heredity
GA CE9BU
UT WOS:000352139200007
PM 25762551
ER
PT J
AU Hermanson, JC
Wiedenhoeft, AC
AF Hermanson, J. C.
Wiedenhoeft, A. C.
TI Data-driven wood anatomy: Using machine vision for wood identification
(and beyond)
SO INTEGRATIVE AND COMPARATIVE BIOLOGY
LA English
DT Meeting Abstract
CT Annual Meeting of the Society-for-Integrative-and-Comparative-Biology
(SICB)
CY JAN 03-07, 2015
CL West Palm Beach, FL
SP Soc Integrat & Comparat Biol
C1 [Hermanson, J. C.; Wiedenhoeft, A. C.] USFS Forest Prod Lab, Madison, WI USA.
EM jhermans@wisc.edu
RI Hermanson, John/K-8106-2015
OI Hermanson, John/0000-0002-3325-6665
NR 0
TC 0
Z9 0
U1 0
U2 0
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 1540-7063
EI 1557-7023
J9 INTEGR COMP BIOL
JI Integr. Comp. Biol.
PD APR
PY 2015
VL 55
SU 1
MA P1.189
BP E273
EP E273
PG 1
WC Zoology
SC Zoology
GA CF6HS
UT WOS:000352658401374
ER
PT J
AU Parker, MR
Avery, ML
AF Parker, M. R.
Avery, M. L.
TI Initial analyses of putative sex pheromones in Burmese pythons
SO INTEGRATIVE AND COMPARATIVE BIOLOGY
LA English
DT Meeting Abstract
CT Annual Meeting of the Society-for-Integrative-and-Comparative-Biology
(SICB)
CY JAN 03-07, 2015
CL West Palm Beach, FL
SP Soc Integrat & Comparat Biol
C1 Washington & Lee Univ, Lexington, VA 24450 USA.
USDA, Natl Wildlife Res Ctr, Washington, DC USA.
EM mrockwellparker@gmail.com
NR 0
TC 0
Z9 0
U1 1
U2 11
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 1540-7063
EI 1557-7023
J9 INTEGR COMP BIOL
JI Integr. Comp. Biol.
PD APR
PY 2015
VL 55
SU 1
MA P3.50
BP E311
EP E311
PG 1
WC Zoology
SC Zoology
GA CF6HS
UT WOS:000352658401525
ER
PT J
AU Slater, GP
Helm, BR
Yocum, GD
Bowsher, JH
AF Slater, G. P.
Helm, B. R.
Yocum, G. D.
Bowsher, J. H.
TI Nutritional variation affects larval growth in honeybees
SO INTEGRATIVE AND COMPARATIVE BIOLOGY
LA English
DT Meeting Abstract
CT Annual Meeting of the Society-for-Integrative-and-Comparative-Biology
(SICB)
CY JAN 03-07, 2015
CL West Palm Beach, FL
SP Soc Integrat & Comparat Biol
C1 N Dakota State Univ, Fargo, ND USA.
USDA ARS, Washington, DC 20250 USA.
EM garett.p.slater@my.ndsu.edu
NR 0
TC 0
Z9 0
U1 1
U2 2
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 1540-7063
EI 1557-7023
J9 INTEGR COMP BIOL
JI Integr. Comp. Biol.
PD APR
PY 2015
VL 55
SU 1
MA P3.182
BP E332
EP E332
PG 1
WC Zoology
SC Zoology
GA CF6HS
UT WOS:000352658401608
ER
PT J
AU Teets, NM
Handler, AM
Hahn, DA
AF Teets, N. M.
Handler, A. M.
Hahn, D. A.
TI Testing the role of oxidative stress in sexual selection with transgenic
overexpression of antioxidant defense systems in the Caribbean fruit
fly, Anastrepha suspensa
SO INTEGRATIVE AND COMPARATIVE BIOLOGY
LA English
DT Meeting Abstract
CT Annual Meeting of the Society-for-Integrative-and-Comparative-Biology
(SICB)
CY JAN 03-07, 2015
CL West Palm Beach, FL
SP Soc Integrat & Comparat Biol
C1 Univ Florida, Gainesville, FL 32611 USA.
ARS, USDA, Washington, DC USA.
EM n.teets@ufl.edu
RI Teets, Nicholas/H-7386-2013
OI Teets, Nicholas/0000-0003-0963-7457
NR 0
TC 0
Z9 0
U1 2
U2 10
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 1540-7063
EI 1557-7023
J9 INTEGR COMP BIOL
JI Integr. Comp. Biol.
PD APR
PY 2015
VL 55
SU 1
MA 32.7
BP E183
EP E183
PG 1
WC Zoology
SC Zoology
GA CF6HS
UT WOS:000352658401014
ER
PT J
AU Torson, AT
Yocum, GD
Rinehart, JP
Kemp, WP
Bowsher, JB
AF Torson, A. T.
Yocum, G. D.
Rinehart, J. P.
Kemp, W. P.
Bowsher, J. B.
TI The genetic profile of increased longevity during chilling In the
solitary bee Megachile rotundata
SO INTEGRATIVE AND COMPARATIVE BIOLOGY
LA English
DT Meeting Abstract
CT Annual Meeting of the Society-for-Integrative-and-Comparative-Biology
(SICB)
CY JAN 03-07, 2015
CL West Palm Beach, FL
SP Soc Integrat & Comparat Biol
C1 N Dakota State Univ, Fargo, ND USA.
ARS, USDA, Washington, DC USA.
EM julia.bowsher@ndsu.edu
NR 0
TC 0
Z9 0
U1 2
U2 4
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 1540-7063
EI 1557-7023
J9 INTEGR COMP BIOL
JI Integr. Comp. Biol.
PD APR
PY 2015
VL 55
SU 1
MA 59.1
BP E185
EP E185
PG 1
WC Zoology
SC Zoology
GA CF6HS
UT WOS:000352658401021
ER
PT J
AU Zelinka, SL
Bourne, KJ
Glass, SV
Hermanson, JC
Wiedenhoeft, AC
AF Zelinka, S. L.
Bourne, K. J.
Glass, S., V
Hermanson, J. C.
Wiedenhoeft, A. C.
TI Force-displacement measurements of pit membranes in gymnosperms
SO INTEGRATIVE AND COMPARATIVE BIOLOGY
LA English
DT Meeting Abstract
CT Annual Meeting of the Society-for-Integrative-and-Comparative-Biology
(SICB)
CY JAN 03-07, 2015
CL West Palm Beach, FL
SP Soc Integrat & Comparat Biol
C1 [Zelinka, S. L.; Bourne, K. J.; Glass, S., V; Hermanson, J. C.; Wiedenhoeft, A. C.] USFS Forest Prod Lab, Madison, WI USA.
EM jhermans@wisc.edu
RI Hermanson, John/K-8106-2015
OI Hermanson, John/0000-0002-3325-6665
NR 0
TC 0
Z9 0
U1 0
U2 1
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 1540-7063
EI 1557-7023
J9 INTEGR COMP BIOL
JI Integr. Comp. Biol.
PD APR
PY 2015
VL 55
SU 1
MA 5.4
BP E209
EP E209
PG 1
WC Zoology
SC Zoology
GA CF6HS
UT WOS:000352658401118
ER
PT J
AU Hall, WA
Bellamy, DE
Walse, SS
AF Hall, Wiley A.
Bellamy, David E.
Walse, Spencer S.
TI Activated Carbons from End-Products of Tree Nut and Tree Fruit
Production as Sorbents for Removing Methyl Bromide in Ventilation
Effluent Following Postharvest Chamber Fumigation
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE methyl bromide; VOC reduction
ID SOLID-PHASE MICROEXTRACTION; ATMOSPHERIC BROMINE; SPME; CALIBRATION;
FIBERS; ALMOND
AB End-products of tree nuts and tree fruits grown in California, USA were evaluated for the ability to remove methyl bromide (MB) from ventilation effluent following postharvest chamber fumigation. Activated carbon sorbents from walnut and almond shells as well as peach and prune pits were prepared using different methods of pyrolysis, activation, and quenching. Each source and preparation was evaluated for yield from starting material (%, m/m) and performance on tests where MB-containing airstreams were directed through a columnar bed of the activated carbon in an experimental apparatus, termed a parallel adsorbent column tester, which was constructed as a scaled-down model of a chamber ventilation system. We report the number of doses needed to first observe the breakthrough of MB downstream of the bed and the capacity of the activated carbon for MB (%, m/m) based on a fractional percentage of MB mass sorbed at breakthrough relative to mass of the bed prior to testing. Results were based on a novel application of solid-phase microextraction with time-weighted averaging sampling of MB concentration in airstreams, which was quantitative across the range of fumigation-relevant conditions and statistically unaffected by relative humidity. Activated carbons from prune pits, prepared either by steam activation or carbon dioxide activation coupled to water quenching, received the greatest number of doses prior to breakthrough and had the highest capacity, approximately 12-14%, outperforming a commercially marketed activated carbon derived from coconut shells. Experimental evidence is presented that links discrepancy in performance to the relative potential for activated carbons to preferentially sorb water vapor relative to MB.
C1 [Hall, Wiley A.; Bellamy, David E.; Walse, Spencer S.] ARS, San Joaquin Valley Agr Sci Ctr, USDA, Parlier, CA 93648 USA.
RP Walse, SS (reprint author), ARS, San Joaquin Valley Agr Sci Ctr, USDA, 9611 South Riverbend Ave, Parlier, CA 93648 USA.
EM spencer.walse@ars.usda.gov
FU USDA-Agricultural Research Service; USDA-Foreign Agricultural Service
and the California Dried Plum Board under the Technical Assistance for
Specialty Crops program [2010-19]
FX This research was funded by the USDA-Agricultural Research Service as
well as the USDA-Foreign Agricultural Service and the California Dried
Plum Board under the Technical Assistance for Specialty Crops program,
Agreement No. 2010-19. Mention of trade names or commercial products in
this publication is solely for the purpose of providing specific
information and does not imply recommendation or endorsement by the U.S.
Department of Agriculture. USDA is an equal opportunity provider and
employer.
NR 26
TC 0
Z9 0
U1 4
U2 26
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
EI 1520-5118
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD APR 1
PY 2015
VL 63
IS 12
BP 3094
EP 3103
DI 10.1021/jf505193e
PG 10
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA CF0OX
UT WOS:000352245200004
PM 25758836
ER
PT J
AU Scott, SJ
Griffin, MJ
Quiniou, S
Khoo, L
Bollinger, TK
AF Scott, S. J.
Griffin, M. J.
Quiniou, S.
Khoo, L.
Bollinger, T. K.
TI Myxobolus neurophilus Guilford 1963 (Myxosporea: Myxobolidae): a common
parasite infecting yellow perch Perca flavescens (Mitchell, 1814) in
Saskatchewan, Canada
SO JOURNAL OF FISH DISEASES
LA English
DT Article
DE Myxobolus neurophilus; Perca flavescens; spinal cord; yellow perch
ID RIBOSOMAL DNA-SEQUENCES; MOLECULAR CHARACTERIZATION; CHANNEL CATFISH;
ALGONQUIAN-PARK; NOVA-SCOTIA; MYXOZOA; TAXONOMY; SPP.; PHYLOGENY; MARINE
AB The goal of this study was to identify a myxosporidian parasite infecting the central nervous system of yellow perch Perca flavescens (Mitchell, 1814) observed while investigating a fish kill in Saskatchewan, Canada. Fish were collected from seven different lakes, from two distinct watersheds. Sixty-four per cent (54/86) of yellow perch contained myxozoan pseudocysts located throughout the spinal cord and brain. Myxospores measured 16.5 mu m (range 16.2-16.8) long and 8.2 mu m (range 7.9-8.4) wide and contained two pyriform, mildly dissymmetrical, polar capsules measuring 7.7 mu m (range 7.3-8.1) long and 2.7 mu m (range 2.4-3.0) wide. The polar capsules each contained a single polar filament, with 7-9 turns per polar filament coil. Sequencing of the 18S SSU rDNA gene demonstrated >99% similarity to Myxobolus neurophilus. In 60% of infected fish, there was a mild to moderate, non-suppurative myelitis or encephalitis, or both, associated with myxospores. Axonal degeneration was present in rare cases. These findings extend the geographical distribution of M. neurophilus and suggest it may be widespread in yellow perch populations in Saskatchewan.
C1 [Scott, S. J.; Bollinger, T. K.] Western Coll Vet Med, Dept Vet Pathol, Saskatoon, SK S7N 5B4, Canada.
[Griffin, M. J.; Khoo, L.] Mississippi State Univ, Coll Vet Med, Dept Pathobiol & Populat Med, Stoneville, MS USA.
[Quiniou, S.] USDA, Warmwater Aquaculture Res Unit, Stoneville, MS USA.
[Bollinger, T. K.] Western Coll Vet Med, Canadian Cooperat Wildlife Hlth Ctr, Dept Vet Pathol, Saskatoon, SK S7N 5B4, Canada.
RP Bollinger, TK (reprint author), Western Coll Vet Med, Canadian Cooperat Wildlife Hlth Ctr, 52 Campus Dr, Saskatoon, SK S7N 5B4, Canada.
EM trent.bollinger@usask.ca
NR 42
TC 1
Z9 1
U1 3
U2 11
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0140-7775
EI 1365-2761
J9 J FISH DIS
JI J. Fish Dis.
PD APR
PY 2015
VL 38
IS 4
BP 355
EP 364
DI 10.1111/jfd.12242
PG 10
WC Fisheries; Marine & Freshwater Biology; Veterinary Sciences
SC Fisheries; Marine & Freshwater Biology; Veterinary Sciences
GA CE9EM
UT WOS:000352146700003
PM 24617301
ER
PT J
AU Eady, M
Park, B
Choi, S
AF Eady, Matthew
Park, Bosoon
Choi, Sun
TI Rapid and Early Detection of Salmonella Serotypes with Hyperspectral
Microscopy and Multivariate Data Analysis
SO JOURNAL OF FOOD PROTECTION
LA English
DT Article
ID LEAST-SQUARES REGRESSION; POULTRY CARCASSES; SIMPLE ALGORITHMS; CHICKEN
FILLETS; CONTAMINATION; SPECTRA
AB This study was designed to evaluate hyperspectral microscope images for early and rapid detection of Salmonella serotypes Enteritidis, Heidelberg, Infantis, Kentucky, and Typhimurium at incubation times of 6, 8, 10, 12, and 24 h. Images were collected by an acousto-optical tunable filter hyperspectral microscope imaging system with a metal halide light source measuring 89 contiguous wavelengths every 4 am between 450 and 800 am. Pearson correlation values were calculated for incubation times of 8, 10, and 12 h and compared with data for 24 h to evaluate the change in spectral signatures from bacterial cells over time. Regions of interest were analyzed at 30% of the pixels in an average cell size. Spectral data were preprocessed by applying a global data transformation algorithm and then subjected to principal component analysis (PCA). The Mahalanobis distance was calculated from PCA score plots for analyzing serotype cluster separation. Partial least-squares regression was applied for calibration and validation of the model, and soft independent modeling of class analogy was utilized to classify serotype clusters in the training set. Pearson correlation values indicate very similar spectral patterns for reduced incubation times ranging from 0.9869 to 0.9990. PCA score plots indicated cluster separation at all incubation times, with incubation time Mahalanobis distances of 2.146 to 27.071. Partial least-squares regression had a maximum root mean squared error of calibration of 0.0025 and a root mean squared error of validation of 0.0030. Soft independent modeling of class analogy correctly classified values at 8 h (98.32%), 10 h (96.67%), 12 h (88.33%), and 24 h (98.67%) with the optimal number of principal components (four or five). The results of this study suggest that Salmonella serotypes can be classified by applying a PCA to hyperspectral microscope imaging data from samples after only 8 h of incubation.
C1 [Eady, Matthew; Park, Bosoon; Choi, Sun] ARS, USDA, Russell Res Ctr, Athens, GA 30605 USA.
RP Park, B (reprint author), ARS, USDA, Russell Res Ctr, Athens, GA 30605 USA.
EM bosoon.park@ars.usda.gov
NR 32
TC 2
Z9 2
U1 3
U2 12
PU INT ASSOC FOOD PROTECTION
PI DES MOINES
PA 6200 AURORA AVE SUITE 200W, DES MOINES, IA 50322-2863 USA
SN 0362-028X
EI 1944-9097
J9 J FOOD PROTECT
JI J. Food Prot.
PD APR
PY 2015
VL 78
IS 4
BP 668
EP 674
DI 10.4315/0362-028X.JFP-14-366
PG 7
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA CF3QM
UT WOS:000352463600005
PM 25836390
ER
PT J
AU Yang, ZQ
Meng, X
Breidt, F
Dean, LL
Arritt, FM
AF Yang, Zhenquan
Meng, Xia
Breidt, Frederick, Jr.
Dean, Lisa L.
Arritt, Fletcher M.
TI Effects of Acetic Acid and Arginine on pH Elevation and Growth of
Bacillus licheniformis in an Acidified Cucumber Juice Medium
SO JOURNAL OF FOOD PROTECTION
LA English
DT Article
ID CLOSTRIDIUM-BOTULINUM; BIOLOGICAL-CONTROL; SUBTILIS; FERMENTATION;
CATABOLISM; TOMATOES; DISEASES; PATHWAY
AB Bacillus licheniformis has been shown to cause pH elevation in tomato products having an initial pH below 4.6 and metabiotic effects that can lead to the growth of pathogenic bacteria. Because of this, the organism poses a potential risk to acidified vegetable products; however, little is known about the growth and metabolism of this organism in these products. To clarify the mechanisms of pH change and growth of B. licheniformis in vegetable broth under acidic conditions, a cucumber juice medium representative of a noninhibitory vegetable broth was used to monitor changes in pH, cell growth, and catabolism of sugars and amino acids. For initial pH values between pH 4.1 to 6.0, pH changes resulted from both fermentation of sugar (lowering pH) and ammonia production (raising pH). An initial pH elevation occurred, with starting pH values of pH 4.1 to 4.9 under both aerobic and anaerobic conditions, and was apparently mediated by the arginine deiminase reaction of B. licheniformis. This initial pH elevation was prevented if 5 mM or greater acetic acid was present in the brine at the same pH. In laboratory media, under favorable conditions for growth, data indicated that growth of the organism was inhibited at pH 4.6 with protonated acetic acid concentrations of 10 to 20 mM, corresponding to 25 to 50 mM total acetic acid; however, growth inhibition required greater than 300 mM citric acid (10-fold excess of the amount in processed tomato products) products under similar conditions. The data indicate that growth and pH increase by B. licheniformis may be inhibited by the acetic acid present in most commercial acidified vegetable products but not by the citric acid in many tomato products.
C1 [Yang, Zhenquan] Yangzhou Univ, Coll Food Sci & Engn, Yangzhou 225001, Jiangsu, Peoples R China.
[Yang, Zhenquan; Meng, Xia; Arritt, Fletcher M.] N Carolina State Univ, Dept Food Bioproc & Nutr Sci, Raleigh, NC 27695 USA.
[Breidt, Frederick, Jr.] N Carolina State Univ, USDA, ARS, South East Area Food Sci Res Unit, Raleigh, NC 27695 USA.
[Dean, Lisa L.] N Carolina State Univ, USDA, ARS, South East Area Market Qual & Handling Res Unit, Raleigh, NC 27695 USA.
RP Breidt, F (reprint author), N Carolina State Univ, USDA, ARS, South East Area Food Sci Res Unit, Raleigh, NC 27695 USA.
EM Fred.Breidt@ars.usda.gov
FU Pickle Packers International, Inc. (Washington, DC); National Natural
Scientific Foundation of China [30901047]; Jiangsu Natural Scientific
Foundation [BK2009191]; Department of Education of Jiangsu Province
[08KJD550003]; USDA Cooperative State Research, Education, and Extension
service project [2006-01240]
FX This research was supported in part by Pickle Packers International,
Inc. (Washington, DC) and by the National Natural Scientific Foundation
of China (Grant 30901047), Jiangsu Natural Scientific Foundation project
(BK2009191), and grant (08KJD550003) from the Department of Education of
Jiangsu Province. Support was also received from the USDA Cooperative
State Research, Education, and Extension service project 2006-01240. We
thank Mrs. Sandra Parker for her assistance in editing the manuscript.
We thank Dr. Glenn Black, Grocery Manufacturers Association, Washington,
DC, for helpful discussions and supplying Bacillus cultures.
NR 31
TC 1
Z9 1
U1 1
U2 12
PU INT ASSOC FOOD PROTECTION
PI DES MOINES
PA 6200 AURORA AVE SUITE 200W, DES MOINES, IA 50322-2863 USA
SN 0362-028X
EI 1944-9097
J9 J FOOD PROTECT
JI J. Food Prot.
PD APR
PY 2015
VL 78
IS 4
BP 728
EP 737
DI 10.4315/0362-028X.JFP-14-478
PG 10
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA CF3QM
UT WOS:000352463600013
PM 25836398
ER
PT J
AU Donado-Godoy, P
Byrne, BA
Hume, M
Leon, M
Perez-Gutierrez, E
Flores, MJV
Clavijo, V
Holguin, A
Romero-Zuniga, JJ
Castellanos, R
Tafur, M
Smith, WA
AF Donado-Godoy, Pilar
Byrne, Barbara A.
Hume, Michael
Leon, Maribel
Perez-Gutierrez, Enrique
Vives Flores, Martha J.
Clavijo, Viviana
Holguin, Angela
Romero-Zuniga, Juan J.
Castellanos, Ricardo
Tafur, McAllister
Smith, Woutrina A.
TI Molecular Characterization of Salmonella Paratyphi B dT plus and
Salmonella Heidelberg from Poultry and Retail Chicken Meat in Colombia
by Pulsed-Field Gel Electrophoresis
SO JOURNAL OF FOOD PROTECTION
LA English
DT Article
ID ANTIMICROBIAL RESISTANCE; RISK-FACTORS; ANTIBIOTIC-RESISTANCE;
UNITED-STATES; ENTERICA; CONTAMINATION; ENTERITIDIS; STRAINS; FLOCKS;
SUSCEPTIBILITY
AB Salmonella Paratyphi B dT+ variant (also termed Salmonella Java) and Salmonella Heidelberg are pathogens of public health importance that are frequently isolated from poultry. As a step toward implementing the Colombian Integrated Program for Antimicrobial Resistant Surveillance, this study characterized molecular patterns of Salmonella Paratyphi B dT+ and Salmonella Heidelberg isolated from poultry farms, fecal samples, and retail chicken meat using pulsed-field gel electrophoresis (PFGE). The objective of this study was to determine the genetic relationship among isolates and to determine potential geographically predominant genotypes. Based on PFGE analysis, both serovars exhibited high heterogeneity: the chromosomal DNA fingerprints of 82 Salmonella Paratyphi B dT+ isolates revealed 42 PFGE patterns, whereas the 21 isolates of Salmonella Heidelberg revealed 10 patterns. Similar genotypes of both serovars were demonstrated to be present on farms and in retail outlets. For Salmonella Paratyphi B dT+, closely genetically related strains were found among isolates coming from different farms and different integrated poultry companies within two departments (Santander and Cundinamarca) and also from farms located in the two geographically distant departments. For Salmonella Heidelberg, there were fewer farms with genetically related isolates than for Salmonella Paratyphi B dT+. A possible dissemination of similar genotypes of both serovars along the poultry production chain is hypothesized, and some facilitating factors existing in Colombia are reviewed.
C1 [Donado-Godoy, Pilar; Clavijo, Viviana; Castellanos, Ricardo] Corp Colombiana Invest Agr CORPOICA, CBB, Cundinamarca, Colombia.
[Byrne, Barbara A.; Smith, Woutrina A.] Univ Calif Davis, Sch Vet Med, Davis, CA 95616 USA.
[Hume, Michael] ARS, USDA, Food Anim Protect Res Lab, College Stn, TX 77845 USA.
[Leon, Maribel; Tafur, McAllister] ICA, Bogota, Colombia.
[Perez-Gutierrez, Enrique] WHO, Pan Amer Hlth Org, Reg Off Amer, Washington, DC 20037 USA.
[Vives Flores, Martha J.; Clavijo, Viviana; Holguin, Angela] Univ Los Andes, Ctr Invest Microbiol CIMIC, Bogota, Colombia.
[Romero-Zuniga, Juan J.] Univ Nacl Costa Rica, Programa Invest Med Poblac, Escuela Med Vet, Heredia, Costa Rica.
RP Donado-Godoy, P (reprint author), Corp Colombiana Invest Agr CORPOICA, CBB, Kilometro 14,Via Mosquera, Cundinamarca, Colombia.
EM pidonado@corpoica.org.co
FU Pan American Health Organization; World Health Organization
FX The authors thank Ian Gardner for his scientific advice during the
execution of this research, Deyanira Barrero from the Instituto
Colombiano Agropecuario (ICA) for granting access to the institute's
research facilities, the Institut Nacional de Salud (INS) for their
guidance on the PFGE technique, and Pan American Health Organization,
World Health Organization for funding part of this study.
NR 44
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Z9 1
U1 0
U2 6
PU INT ASSOC FOOD PROTECTION
PI DES MOINES
PA 6200 AURORA AVE SUITE 200W, DES MOINES, IA 50322-2863 USA
SN 0362-028X
EI 1944-9097
J9 J FOOD PROTECT
JI J. Food Prot.
PD APR
PY 2015
VL 78
IS 4
BP 802
EP 807
DI 10.4315/0362-028X.JFP-14-356
PG 6
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA CF3QM
UT WOS:000352463600023
PM 25836408
ER
PT J
AU Palumbo, JD
O'Keeffe, TL
Ho, YS
Santillan, CJ
AF Palumbo, Jeffrey D.
O'Keeffe, Teresa L.
Ho, Yvonne S.
Santillan, Carlo J.
TI Occurrence of Ochratoxin A Contamination and Detection of Ochratoxigenic
Aspergillus Species in Retail Samples of Dried Fruits and Nuts
SO JOURNAL OF FOOD PROTECTION
LA English
DT Article
ID VINE FRUITS; A PRODUCTION; BLACK ASPERGILLI; SECTION NIGRI; WINE GRAPES;
PENICILLIUM-VERRUCOSUM; TOXIGENIC FUNGI; SPANISH MARKET; UNITED-STATES;
STRAINS
AB Ochratoxin A (OTA) is a mycotoxin produced by several species of Aspergillus and Penicillium and is a potential contaminant of a wide variety of food products. To determine the incidence of OTA contamination in dried fruits and tree nuts, retail packaged and bulk raisins, dates, figs, prunes, almonds, pistachios, and walnuts were collected from small and large supermarkets in seven areas of the United States between 2012 and 2014. Of the 665 samples analyzed, OTA was detected in 48 raisin samples, 4 fig samples, 4 pistachio samples, and 1 date sample. OTA contamination levels ranged from 0.28 to 15.34 ng/g in dried fruits and 1.87 to 890 ng/g in pistachios; two raisin samples and one pistachio sample exceeded the European Union regulatory limit of 10 ng/g. PCR detection of potential OTA-producing Aspergillus species revealed the presence of A. niger, A. welwitschiae, and A. carbonarius in 20, 7, and 7 of the 57 OTA-contaminated samples, respectively. However, OTA-producing A. carbonarius was isolated from only one raisin sample, and no other OTA-producing Aspergillus species were found. These results suggest that raisins are more frequently contaminated with low levels of OTA than are other dried fruits and nuts and that Aspergillus species are the likely source of that contamination.
C1 [Palumbo, Jeffrey D.; O'Keeffe, Teresa L.; Ho, Yvonne S.; Santillan, Carlo J.] ARS, USDA, Foodborne Toxin Detect & Prevent Res Unit, Albany, CA 94710 USA.
RP Palumbo, JD (reprint author), ARS, USDA, Foodborne Toxin Detect & Prevent Res Unit, 800 Buchanan St, Albany, CA 94710 USA.
EM jeffrey.palumbo@ars.usda.gov
FU Agriculture and Food Research Initiative competitive grant from the U.S.
Department of Agriculture National Institute of Food and Agriculture
[2011-67005-20676]
FX This work was supported by Agriculture and Food Research Initiative
competitive grant 2011-67005-20676 from the U.S. Department of
Agriculture National Institute of Food and Agriculture. We thank A.
Bianchini, J. Cappozzo, L. Jackson, J. Kuruc, D. Ryu, J. Stratton, C.
Wolf-Hall, and F. Wu for sample collection and helpful discussions.
NR 51
TC 8
Z9 8
U1 6
U2 27
PU INT ASSOC FOOD PROTECTION
PI DES MOINES
PA 6200 AURORA AVE SUITE 200W, DES MOINES, IA 50322-2863 USA
SN 0362-028X
EI 1944-9097
J9 J FOOD PROTECT
JI J. Food Prot.
PD APR
PY 2015
VL 78
IS 4
BP 836
EP 842
DI 10.4315/0362-028X.JFP-14-471
PG 7
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA CF3QM
UT WOS:000352463600029
PM 25836414
ER
PT J
AU Kellermayer, R
AF Kellermayer, Richard
TI Burdening Questions About Clostridium difficile in Pediatric
Inflammatory Bowel Diseases
SO JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION
LA English
DT Editorial Material
ID INFECTION; CHILDREN; COLONIZATION; MICROBIOME; CARRIAGE
C1 [Kellermayer, Richard] ARS, Sect Pediat Gastroenterol, Dept Pediat, Baylor Coll Med,Texas Childrens Hosp,USDA,Childre, Houston, TX USA.
RP Kellermayer, R (reprint author), Baylor Coll Med, Sect Pediat Gastroenterol Hepatol & Nutr, 6621 Fannin St,CC1010-00, Houston, TX 77030 USA.
EM kellerma@bcm.edu
NR 20
TC 2
Z9 2
U1 0
U2 2
PU LIPPINCOTT WILLIAMS & WILKINS
PI PHILADELPHIA
PA TWO COMMERCE SQ, 2001 MARKET ST, PHILADELPHIA, PA 19103 USA
SN 0277-2116
EI 1536-4801
J9 J PEDIATR GASTR NUTR
JI J. Pediatr. Gastroenterol. Nutr.
PD APR
PY 2015
VL 60
IS 4
BP 421
EP 422
DI 10.1097/MPG.0000000000000756
PG 2
WC Gastroenterology & Hepatology; Nutrition & Dietetics; Pediatrics
SC Gastroenterology & Hepatology; Nutrition & Dietetics; Pediatrics
GA CE9IR
UT WOS:000352158100012
PM 25658059
ER
PT J
AU Aldema-Ramos, ML
Muir, ZE
Trusello, J
Truong, N
Uknalis, J
AF Aldema-Ramos, M. L.
Muir, Z. E.
Trusello, J.
Truong, N.
Uknalis, J.
TI DEVELOPMENT OF AN ALTERNATIVE LOW SALT BOVINE HIDE PRESERVATION USING
PEG AND CRUDE GLYCEROL, PART I: EVALUATION OF PEG MOLECULAR WEIGHT
FRACTIONS
SO JOURNAL OF THE AMERICAN LEATHER CHEMISTS ASSOCIATION
LA English
DT Article
ID SHORT-TERM PRESERVATION; SKINS; CHLORIDE; PROTEIN
AB Brine curing using sodium chloride is widely used for the short-term preservation of cattle hides. Due to economics and efficiency, it has become the traditional method of hide preservation used by meat packers, hide processors and tanners worldwide. But brine curing is known to cause serious effluent pollution problems in the environment. The main objective of the current study was to develop an alternative brining process that requires less salt to effectively preserve bovine hides by incorporating dehydrating agents. In low salt preservation, the anticipated hardening effect due to over dehydration caused by polyethylene glycol (PEG) polymers was compensated by adding crude glycerol and sodium carbonate. Low molecular weight PEGs were more effective than high molecular weight polymers. Preservation was found to be effective because no sign of putrefaction was observed in alternatively cured hides, and the properties of these hides were comparable to those of traditionally preserved hides. When PEG was incorporated, the salt concentration required for hide preservation could be reduced.
C1 [Aldema-Ramos, M. L.; Muir, Z. E.] ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
[Trusello, J.; Truong, N.] Drexel Univ, Philadelphia, PA 19104 USA.
RP Aldema-Ramos, ML (reprint author), ARS, USDA, Eastern Reg Res Ctr, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM mila.ramos@ars.usda.gov
NR 16
TC 1
Z9 1
U1 3
U2 3
PU AMER LEATHER CHEMISTS ASSOC
PI LUBBOCK
PA 1314 50 ST, STE 103, LUBBOCK, TX 79412 USA
SN 0002-9726
J9 J AM LEATHER CHEM AS
JI J. Am. Leather Chem. Assoc.
PD APR
PY 2015
VL 110
IS 4
BP 109
EP 113
PG 5
WC Chemistry, Applied; Materials Science, Textiles
SC Chemistry; Materials Science
GA CF1TT
UT WOS:000352331500003
ER
PT J
AU Li, MH
Robinson, EH
Lucas, PM
Bosworth, BG
AF Li, Menghe H.
Robinson, Edwin H.
Lucas, Penelope M.
Bosworth, Brian G.
TI Evaluation of Low-protein Alternative Diets for Pond-raised Hybrid
Catfish, Ictalurus punctatus x Ictalurus furcatus
SO JOURNAL OF THE WORLD AQUACULTURE SOCIETY
LA English
DT Article
ID CORN GLUTEN FEED; CHANNEL CATFISH; PROCESSING YIELD; BODY-COMPOSITION;
SOYBEAN-MEAL; BLUE CATFISH; TRADITIONAL DIETS; COTTONSEED MEAL; GROWTH;
EFFICIENCY
AB A study was conducted to evaluate low-protein traditional or alternative diets for pond-raised hybrid catfish, Ictalurus punctatusxIctalurus furcatus. Three 24% protein diets containing decreasing levels of soybean meal (30, 20, and 15%) and increasing levels of cottonseed meal and corn germ meal were compared with a 28% protein control diet. Hybrid catfish fingerlings (mean initial weight=71g/fish) were stocked into 20 earthen ponds (0.04ha) at a density of 14,826 fish/ha with five ponds per dietary treatment. Fish were fed once daily to apparent satiation for a 191-d growing season. There were no significant differences in total diet fed, net yield, weight gain, feed conversion ratio (FCR), survival, or fillet proximate nutrient composition among dietary treatments (P0.10). However, regression analysis showed for fish fed 24% protein diets there was a linear increase in FCR as soybean meal levels decreased (P=0.06). Compared with fish fed the 28% protein control diet, fish fed 24% protein diets had lower carcass and fillet yield. Results demonstrate a 24% protein alternative diet containing 20% soybean meal may be substituted for 28% protein diets for hybrid catfish during food fish production.
C1 [Li, Menghe H.; Robinson, Edwin H.; Lucas, Penelope M.] Mississippi State Univ, Thad Cochran Natl Warmwater Aquaculture Ctr, Stoneville, MS 38776 USA.
[Bosworth, Brian G.] ARS, USDA, Warmwater Aquaculture Res Unit, Thad Cochran Natl Warmwater Aquaculture Ctr, Stoneville, MS 38776 USA.
RP Li, MH (reprint author), Mississippi State Univ, Thad Cochran Natl Warmwater Aquaculture Ctr, POB 197, Stoneville, MS 38776 USA.
EM mli@drec.msstate.edu
FU [MIS-371590]
FX The authors thank Billy Rutland, Lee McIntire, and staff at the National
Warmwater Aquaculture Center for assistance in routine management of the
study, and Sandra Phillips and Sam St. Clair for their assistance with
proximate analysis of diet and tissue samples. This manuscript is
approved for publication as Journal Article No. J-12568 of the
Mississippi Agricultural and Forestry Experiment Station, Mississippi
State University. The project was supported under Project No.
MIS-371590. Reference to trade names does not imply endorsement by the
U.S. Government.
NR 31
TC 1
Z9 1
U1 0
U2 6
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0893-8849
EI 1749-7345
J9 J WORLD AQUACULT SOC
JI J. World Aquacult. Soc.
PD APR
PY 2015
VL 46
IS 2
BP 228
EP 234
DI 10.1111/jwas.12178
PG 7
WC Fisheries
SC Fisheries
GA CF5XZ
UT WOS:000352631900012
ER
PT J
AU Swayne, DE
Suarez, DL
Spackman, E
Jadhao, S
Dauphin, G
Kim-Torchetti, M
McGrane, J
Weaver, J
Daniels, P
Wong, F
Selleck, P
Wiyono, A
Indriani, R
Yupiana, Y
Siregar, ES
Prajitno, T
Smith, D
Fouchier, R
AF Swayne, David E.
Suarez, David L.
Spackman, Erica
Jadhao, Samadhan
Dauphin, Gwenaelle
Kim-Torchetti, Mia
McGrane, James
Weaver, John
Daniels, Peter
Wong, Frank
Selleck, Paul
Wiyono, Agus
Indriani, Risa
Yupiana, Yuni
Siregar, Elly Sawitri
Prajitno, Teguh
Smith, Derek
Fouchier, Ron
TI Antibody Titer Has Positive Predictive Value for Vaccine Protection
against Challenge with Natural Antigenic-Drift Variants of H5N1
High-Pathogenicity Avian Influenza Viruses from Indonesia
SO JOURNAL OF VIROLOGY
LA English
DT Article
ID HEMAGGLUTININ MOLECULE; REVERSE GENETICS; HONG-KONG; CLADE 2.2.1;
CHICKENS; EVOLUTION; EFFICACY; POULTRY; STRAIN; VIETNAM
AB Vaccines are used in integrated control strategies to protect poultry against H5N1 high-pathogenicity avian influenza (HPAI). H5N1 HPAI was first reported in Indonesia in 2003, and vaccination was initiated in 2004, but reports of vaccine failures began to emerge in mid-2005. This study investigated the role of Indonesian licensed vaccines, specific vaccine seed strains, and emerging variant field viruses as causes of vaccine failures. Eleven of 14 licensed vaccines contained the manufacturer's listed vaccine seed strains, but 3 vaccines contained a seed strain different from that listed on the label. Vaccines containing A/turkey/Wisconsin/1968 (WI/68), A/chicken/Mexico/28159-232/1994 (Mex/94), and A/turkey/England/N28/1973 seed strains had high serological potency in chickens (geometric mean hemagglutination inhibition [HI] titers,>= 1:169), but vaccines containing strain A/chicken/Guangdong/1/1996 generated by reverse genetics (rg;rgGD/96), A/chicken/Legok/2003 (Legok/03), A/chicken/Vietnam/C57/2004 generated by rg (rgVN/04), or A/chicken/Legok/2003 generated by rg (rgLegok/03) had lower serological potency (geometric mean HI titers,<= 1: 95). In challenge studies, chickens immunized with any of the H5 avian influenza vaccines were protected against A/chicken/West Java/SMI-HAMD/2006 (SMI-HAMD/06) and were partially protected against A/chicken/Papua/TA5/2006 (Papua/06) but were not protected against A/chicken/West Java/PWT-WIJ/2006 (PWT/06). Experimental inactivated vaccines made with PWT/06 HPAI virus or rg-generated PWT/06 low-pathogenicity avian influenza (LPAI) virus seed strains protected chickens from lethal challenge, as did a combination of a commercially available live fowl poxvirus vaccine expressing the H5 influenza virus gene and inactivated Legok/03 vaccine. These studies indicate that antigenic variants did emerge in Indonesia following widespread H5 avian influenza vaccine usage, and efficacious inactivated vaccines can be developed using antigenic variant wild-type viruses or rg-generated LPAI virus seed strains containing the hemagglutinin and neuraminidase genes of wild-type viruses.
IMPORTANCE
H5N1 high-pathogenicity avian influenza (HPAI) virus has become endemic in Indonesian poultry, and such poultry are the source of virus for birds and mammals, including humans. Vaccination has become a part of the poultry control strategy, but vaccine failures have occurred in the field. This study identified possible causes of vaccine failure, which included the use of an unlicensed virus seed strain and induction of low levels of protective antibody because of an insufficient quantity of vaccine antigen. However, the most important cause of vaccine failure was the appearance of drift variant field viruses that partially or completely overcame commercial vaccine-induced immunity. Furthermore, experimental vaccines using inactivated wild-type virus or reverse genetics-generated vaccines containing the hemagglutinin and neuraminidase genes of wild-type drift variant field viruses were protective. These studies indicate the need for surveillance to identify drift variant viruses in the field and update licensed vaccines when such variants appear.
C1 [Swayne, David E.; Suarez, David L.; Spackman, Erica; Jadhao, Samadhan] ARS, Exot & Emerging Avian Viral Dis Res Unit, USDA, Athens, GA 30601 USA.
[Dauphin, Gwenaelle; Kim-Torchetti, Mia] Emergency Prevent Syst Anim Hlth EMPRES AH, Food & Agr Org United Nations, Rome, Italy.
[McGrane, James; Weaver, John] ECTAD, Food & Agr Org United Nations, Jakarta, Indonesia.
[Daniels, Peter; Wong, Frank; Selleck, Paul] Australian Anim Hlth Lab, Geelong, Vic, Australia.
[Wiyono, Agus; Indriani, Risa] IRCVS, Bogor, Indonesia.
[Yupiana, Yuni] Natl Vet Drug Assay Lab, Bogor, Indonesia.
[Siregar, Elly Sawitri] Minist Agr, Directorate Gen Livestock Serv & Anim Hlth, Jakarta, Indonesia.
[Prajitno, Teguh] Japfa Comfeed Indonesia, Jakarta, Indonesia.
[Smith, Derek] Univ Cambridge, Dept Zool, Cambridge, England.
[Fouchier, Ron] Erasmus MC, Dept Virosci, Rotterdam, Netherlands.
RP Swayne, DE (reprint author), ARS, Exot & Emerging Avian Viral Dis Res Unit, USDA, Athens, GA 30601 USA.
EM David.Swayne@ars.usda.gov
RI Wong, Frank/H-1950-2013; Fouchier, Ron/A-1911-2014
OI Fouchier, Ron/0000-0001-8095-2869
FU Agricultural Research Service, USDA, Current Research Information
Service [6612-32000-048-00D, 6612 32000 064 00D]; FAO project
[OSRO/INS/703/USA, 44133]; National Institute of Allergy and Infectious
Diseases, National Institutes of Health [HHSN266200700010C,
HHSN272201400008C]; U.S. Agency for International Development
FX This work was partially supported by Agricultural Research Service,
USDA, Current Research Information Service, projects 6612-32000-048-00D
and 6612 32000 064 00D, the U.S. Agency for International Development,
FAO project OSRO/INS/703/USA (PR no. 44133), and National Institute of
Allergy and Infectious Diseases, National Institutes of Health,
contracts HHSN266200700010C and HHSN272201400008C.
NR 74
TC 13
Z9 13
U1 2
U2 18
PU AMER SOC MICROBIOLOGY
PI WASHINGTON
PA 1752 N ST NW, WASHINGTON, DC 20036-2904 USA
SN 0022-538X
EI 1098-5514
J9 J VIROL
JI J. Virol.
PD APR
PY 2015
VL 89
IS 7
BP 3746
EP 3762
DI 10.1128/JVI.00025-15
PG 17
WC Virology
SC Virology
GA CF0ER
UT WOS:000352216100025
PM 25609805
ER
PT J
AU Bag, S
Schwartz, HF
Cramer, CS
Havey, MJ
Pappu, HR
AF Bag, Sudeep
Schwartz, Howard F.
Cramer, Christopher S.
Havey, Michael J.
Pappu, Hanu R.
TI Iris yellow spot virus (Tospovirus: Bunyaviridae): from obscurity to
research priority
SO MOLECULAR PLANT PATHOLOGY
LA English
DT Article
DE Bunyaviridae; thrips; tospoviruses; viruses
ID THRIPS THYSANOPTERA THRIPIDAE; ONION ALLIUM-CEPA; WILT-VIRUS; 1ST
REPORT; UNITED-STATES; FAMILY BUNYAVIRIDAE; GENUS TOSPOVIRUS; BASE
COMPLEMENTARITY; NATURAL INFECTION; TEMPORAL DYNAMICS
AB Taxonomy: Iris yellow spot virus (IYSV) is in the genus Tospovirus, family Bunyaviridae, with a single-stranded, tri-segmented RNA genome with an ambisense genome organization. Members of the other genera in the family infect predominantly vertebrates and insects.
Geographical distribution: IYSV is present in most Allium-growing regions of the world.
Physical properties: Virions are pleomorphic particles of 80-120 nm in size. The particle consists of RNA, protein, glycoprotein and lipids.
Genome: IYSV shares the genomic features of other tospoviruses: a segmented RNA genome of three RNAs, referred to as large (L), medium (M) and small (S). The L RNA codes for the RNA-dependent RNA polymerase (RdRp) in negative sense. The M RNA uses an ambisense coding strategy and codes for the precursor for the GN/GC glycoprotein in the viral complementary (vc) sense and a non-structural protein (NSm) in the viral (v) sense. The S RNA also uses an ambisense coding strategy with the coat protein (N) in vc sense and a non-structural protein (NSs) in the v sense.
Transmission: The virus is transmitted by Thrips tabaci Lindeman (Order: Thysanoptera; Family: Thripidae; onion thrips) and with less efficiency by Frankliniella fusca Hinds (tobacco thrips).
Host: IYSV has a relatively broad host range, including cultivated and wild onions, garlic, chives, leeks and several ornamentals. Some weeds are naturally infected by IYSV and may serve as alternative hosts for the virus.
Symptoms: IYSV symptoms in Allium spp. are yellow-to straw-coloured, diamond-shaped lesions on leaves and flowering scapes. Diamond-shaped lesions are particularly pronounced on scapes. As the disease progresses, the lesions coalesce, leading to lodging of the scapes. In seed crops, this could lead to a reduction in yield and quality. Early to mid-season infection in bulb crops results in reduced vigour and bulb size.
Control: Resistant varieties are not available, but a limited number of accessions with field tolerance have been identified. Integrated disease management tactics, including sanitation, crop rotation, thrips management, maintenance of optimal plant vigour, soil fertility, irrigation and physical separation of bulb and seed crops, can mitigate the effect of the disease.
C1 [Bag, Sudeep; Pappu, Hanu R.] Washington State Univ, Dept Plant Pathol, Pullman, WA 99164 USA.
[Schwartz, Howard F.] Colorado State Univ, Dept Bioagr Sci & Pest Management, Ft Collins, CO 80523 USA.
[Cramer, Christopher S.] New Mexico State Univ, Dept Plant & Environm Sci, Las Cruces, NM 88003 USA.
[Havey, Michael J.] Univ Wisconsin, USDA, ARS, Madison, WI 53706 USA.
[Havey, Michael J.] Univ Wisconsin, Dept Hort, Madison, WI 53706 USA.
RP Pappu, HR (reprint author), Washington State Univ, Dept Plant Pathol, Pullman, WA 99164 USA.
EM hrp@wsu.edu
FU United States Department of Agriculture - National Institute of Food and
Agriculture (USDA-NIFA) Specialty Crop Research Initiative
[2008-51180-04875, 2008-4804, 2010-01193]; PPNS, Department of Plant
Pathology, College of Agricultural, Human and Natural Resource Sciences,
Agricultural Research Center, Washington State University, Pullman, WA,
USA [0575, WNPO 0545]
FX This research was funded in part by the United States Department of
Agriculture - National Institute of Food and Agriculture (USDA-NIFA)
Specialty Crop Research Initiative Grant numbers 2008-51180-04875,
2008-4804 and 2010-01193. PPNS no. 0575, Department of Plant Pathology,
College of Agricultural, Human and Natural Resource Sciences,
Agricultural Research Center, Project # WNPO 0545, Washington State
University, Pullman, WA 99164-6430, USA.
NR 98
TC 9
Z9 9
U1 4
U2 32
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1464-6722
EI 1364-3703
J9 MOL PLANT PATHOL
JI Mol. Plant Pathol.
PD APR
PY 2015
VL 16
IS 3
BP 224
EP 237
DI 10.1111/mpp.12177
PG 14
WC Plant Sciences
SC Plant Sciences
GA CE9GN
UT WOS:000352152200002
PM 25476540
ER
PT J
AU Tzuri, G
Zhou, XJ
Chayut, N
Yuan, H
Portnoy, V
Meir, A
Sa'ar, U
Baumkoler, F
Mazourek, M
Lewinsohn, E
Fei, ZJ
Schaffer, AA
Li, L
Burger, J
Katzir, N
Tadmor, Y
AF Tzuri, Galil
Zhou, Xiangjun
Chayut, Noam
Yuan, Hui
Portnoy, Vitaly
Meir, Ayala
Sa'ar, Uzi
Baumkoler, Fabian
Mazourek, Michael
Lewinsohn, Efraim
Fei, Zhangjun
Schaffer, Arthur A.
Li, Li
Burger, Joseph
Katzir, Nurit
Tadmor, Yaakov
TI A 'golden' SNP in CmOr governs the fruit flesh color of melon (Cucumis
melo)
SO PLANT JOURNAL
LA English
DT Article
DE allelic variation; carotenoids; Cucumis meloL; Or gene
ID BETA-CAROTENE ACCUMULATION; CONSENSUS LINKAGE MAP; CRISPR-CAS SYSTEM;
POTATO-TUBERS; GENE; CAULIFLOWER; L.; PLANTS; BIOSYNTHESIS; ARABIDOPSIS
AB The flesh color of Cucumis melo (melon) is genetically determined, and can be white, light green or orange, with -carotene being the predominant pigment. We associated carotenoid accumulation in melon fruit flesh with polymorphism within CmOr, a homolog of the cauliflower BoOr gene, and identified CmOr as the previously described gf locus in melon. CmOr was found to co-segregate with fruit flesh color, and presented two haplotypes (alleles) in a broad germplasm collection, one being associated with orange flesh and the second being associated with either white or green flesh. Allelic variation of CmOr does not affect its transcription or protein level. The variation also does not affect its plastid subcellular localization. Among the identified single nucleotide polymorphisms (SNPs) between CmOr alleles in orange versus green/white-flesh fruit, a single SNP causes a change of an evolutionarily highly conserved arginine to histidine in the CmOr protein. Functional analysis of CmOr haplotypes in an Arabidopsis callus system confirmed the ability of the CmOr orange haplotype to induce -carotene accumulation. Site-directed mutagenesis of the CmOr green/white haplotype to change the CmOR arginine to histidine triggered -carotene accumulation. The identification of the golden' SNP in CmOr, which is responsible for the non-orange and orange melon fruit phenotypes, provides new tools for studying the Or mechanism of action, and suggests genome editing of the Or gene for nutritional biofortification of crops.
Significance Statement Our work demonstrates that a change of arginine to histidine in an evolutionarily highly-conserved location in Or proteins, is responsible for b-carotene accumulation in melon fruit and is capable to induce b-carotene accumulation in a heterologous system. This golden SNP could lead not only to better understanding of the mechanism underlying Or-induced carotenoid accumulation, but also to new approaches for biofortification of agricultural products with pro-vitamin A via genome-editing technology.
C1 [Tzuri, Galil; Chayut, Noam; Portnoy, Vitaly; Meir, Ayala; Sa'ar, Uzi; Baumkoler, Fabian; Lewinsohn, Efraim; Burger, Joseph; Katzir, Nurit; Tadmor, Yaakov] Israeli Agr Res Org, Inst Plant Sci, Newe Yaar Res Ctr, IL-30095 Ramat Yishay, Israel.
[Zhou, Xiangjun; Yuan, Hui; Mazourek, Michael; Li, Li] Cornell Univ, Dept Plant Breeding & Genet, Ithaca, NY 14853 USA.
[Chayut, Noam] Technion Israel Inst Technol, Fac Biol, IL-32000 Haifa, Israel.
[Fei, Zhangjun] Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA.
[Schaffer, Arthur A.] Agr Res Org, Volcani Ctr, Inst Plant Sci, IL-50250 Bet Dagan, Israel.
[Li, Li] Cornell Univ, ARS, USDA, Robert W Holly Ctr Agr & Hlth, Ithaca, NY 14853 USA.
RP Tadmor, Y (reprint author), Israeli Agr Res Org, Inst Plant Sci, Newe Yaar Res Ctr, POB 1021, IL-30095 Ramat Yishay, Israel.
EM tadmory@agri.gov.il
RI Yuan, Hui/H-6723-2016
FU BARD [US-4423-11]; 'Center for the Improvement of Cucurbit Fruit
Quality', ARO, Israel
FX We gratefully acknowledge partial support from BARD US-4423-11 and from
the 'Center for the Improvement of Cucurbit Fruit Quality', ARO, Israel.
We thank Carly Golodets and Harry Paris for editing the article. The
authors have no conflicts of interest to declare. Thie is publication
no. 101/2015 of the Agricultural Research Organization, Bet Dagan,
Israel.
NR 47
TC 11
Z9 12
U1 6
U2 57
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0960-7412
EI 1365-313X
J9 PLANT J
JI Plant J.
PD APR
PY 2015
VL 82
IS 2
BP 267
EP 279
DI 10.1111/tpj.12814
PG 13
WC Plant Sciences
SC Plant Sciences
GA CF5FG
UT WOS:000352581600008
PM 25754094
ER
PT J
AU Schwarz, K
Fragkias, M
Boone, CG
Zhou, WQ
McHale, M
Grove, JM
O'Neil-Dunne, J
McFadden, JP
Buckley, GL
Childers, D
Ogden, L
Pincetl, S
Pataki, D
Whitmer, A
Cadenasso, ML
AF Schwarz, Kirsten
Fragkias, Michail
Boone, Christopher G.
Zhou, Weiqi
McHale, Melissa
Grove, J. Morgan
O'Neil-Dunne, Jarlath
McFadden, Joseph P.
Buckley, Geoffrey L.
Childers, Dan
Ogden, Laura
Pincetl, Stephanie
Pataki, Diane
Whitmer, Ali
Cadenasso, Mary L.
TI Trees Grow on Money: Urban Tree Canopy Cover and Environmental Justice
SO PLOS ONE
LA English
DT Article
ID RACIAL-INEQUALITY; HAZARDOUS-WASTE; LAND-COVER; VEGETATION; BALTIMORE;
MODELS; EQUITY; ECOSYSTEMS; PATTERNS; ECOLOGY
AB This study examines the distributional equity of urban tree canopy (UTC) cover for Baltimore, MD, Los Angeles, CA, New York, NY, Philadelphia, PA, Raleigh, NC, Sacramento, CA, and Washington, D.C. using high spatial resolution land cover data and census data. Data are analyzed at the Census Block Group levels using Spearman's correlation, ordinary least squares regression (OLS), and a spatial autoregressive model (SAR). Across all cities there is a strong positive correlation between UTC cover and median household income. Negative correlations between race and UTC cover exist in bivariate models for some cities, but they are generally not observed using multivariate regressions that include additional variables on income, education, and housing age. SAR models result in higher r-square values compared to the OLS models across all cities, suggesting that spatial autocorrelation is an important feature of our data. Similarities among cities can be found based on shared characteristics of climate, race/ethnicity, and size. Our findings suggest that a suite of variables, including income, contribute to the distribution of UTC cover. These findings can help target simultaneous strategies for UTC goals and environmental justice concerns.
C1 [Schwarz, Kirsten] No Kentucky Univ, Dept Biol, Highland Hts, KY 41076 USA.
[Fragkias, Michail] Boise State Univ, Dept Econ, Coll Business & Econ COBE, Boise, ID 83725 USA.
[Boone, Christopher G.; Childers, Dan] Arizona State Univ, Sch Sustainabil, Tempe, AZ USA.
[Zhou, Weiqi] Chinese Acad Sci, Ctr Ecoenvironm Sci, Beijing, Peoples R China.
[McHale, Melissa] N Carolina State Univ, Dept Forestry & Environm Resources, Raleigh, NC USA.
[Grove, J. Morgan] USDA, Forest Serv, No Res Stn, Baltimore, MD USA.
[O'Neil-Dunne, Jarlath] Univ Vermont, Rubenstein Sch Environm & Nat Resources, Burlington, VT USA.
[O'Neil-Dunne, Jarlath] Spatial Anal Lab, Burlington, VT USA.
[McFadden, Joseph P.] Univ Calif Santa Barbara, Dept Geog, Santa Barbara, CA 93106 USA.
[Buckley, Geoffrey L.] Ohio Univ, Dept Geog, Clippinger Labs 109, Athens, OH 45701 USA.
[Ogden, Laura] Florida Int Univ, Dept Global & Sociocultural Studies, Miami, FL 33199 USA.
[Pincetl, Stephanie] Univ Calif Los Angeles, Inst Environm & Sustainabil, Los Angeles, CA USA.
[Pataki, Diane] Univ Utah, Dept Biol, Salt Lake City, UT 84112 USA.
[Whitmer, Ali] Georgetown Univ, Washington, DC USA.
[Cadenasso, Mary L.] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
RP Schwarz, K (reprint author), No Kentucky Univ, Dept Biol, Highland Hts, KY 41076 USA.
EM schwarzk1@nku.edu
FU National Center for Ecological Analysis and Synthesis, Project [12575]
FX Funding was provided by the National Center for Ecological Analysis and
Synthesis, Project 12575 (http://www.nceas.ucsb.edu/). The funders had
no role in study design, data collection and analysis, decision to
publish, or preparation of the manuscript.
NR 63
TC 16
Z9 17
U1 4
U2 39
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD APR 1
PY 2015
VL 10
IS 4
AR e0122051
DI 10.1371/journal.pone.0122051
PG 17
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA CE9AM
UT WOS:000352135600096
PM 25830303
ER
PT J
AU Kaplan, D
Bachelin, M
Yu, C
Munoz-Carpena, R
Potter, TL
Rodriguez-Chacon, W
AF Kaplan, D.
Bachelin, M.
Yu, C.
Munoz-Carpena, R.
Potter, Thomas L.
Rodriguez-Chacon, W.
TI A hydrologic tracer study in a small, natural wetland in the humid
tropics of Costa Rica
SO WETLANDS ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Tracer study; Wetland hydrology; Bromide; Residence time; Water quality;
Humid tropics; Ecosystem services
ID FLOW CONSTRUCTED WETLAND; SOLUTE TRANSPORT; SUBSURFACE FLOW;
WATER-QUALITY; NUTRIENT RETENTION; FLORIDA EVERGLADES; VEGETATION;
CONSERVATION; BIODIVERSITY; MACROPHYTES
AB Growing populations and food demand in the tropics are leading to increased environmental pressures on wetland ecosystems, including a greater reliance on natural wetlands for water quality improvement. Effective assessment of wetland treatment potential requires an improved understanding of the hydraulic and biogeochemical factors that govern contaminant behavior, however detailed studies of flow through natural, tropical wetlands are scarce. We performed a tracer study using a conservative salt (potassium bromide) to examine the hydraulic behavior of a small, natural wetland in the Costa Rican humid tropics and modeled observed breakthrough curves using the 1-D advection-dispersion equation. Velocities in the wetland were extremely slow, from less than 4 m day(-1) to a maximum of similar to 30 m day(-1), and were distributed across several flowpaths, illustrating a spatial heterogeneity of flow and velocities. Modeled dispersion coefficients were also low (33 +/- A 33 m(2) day(-1)). Estimated residence times suggested high potential pollutant removal capacity over a range of influent concentrations, reinforcing the environmental services provided by this and other small tropical wetlands. The study also highlighted how small variations in wetland topography and vegetation yield strong differences in transport patterns that affect transport and mixing in densely vegetated, heterogeneous wetland systems. Empirical data on the hydraulics, and resulting ecosystem functions, of small, distributed wetlands may provide support for improved conservation and management of these important ecosystems.
C1 [Kaplan, D.] Univ Florida, Dept Environm Engn Sci, Engn Sch Sustainable Infrastruct & Environm, Phelps Lab 6, Gainesville, FL 32611 USA.
[Kaplan, D.; Bachelin, M.; Yu, C.; Munoz-Carpena, R.] Univ Florida, Agr & Biol Engn Dept, Gainesville, FL 32611 USA.
[Bachelin, M.] Ecole Polytech Fed Lausanne, Sect Sci & Ingn Environm, CH-1015 Lausanne, Switzerland.
[Potter, Thomas L.] ARS, USDA, Southeast Watershed Lab, Tifton, GA 31793 USA.
[Rodriguez-Chacon, W.] EARTH Univ, San Jose, Costa Rica.
RP Kaplan, D (reprint author), Univ Florida, Dept Environm Engn Sci, Engn Sch Sustainable Infrastruct & Environm, Phelps Lab 6, POB 116350, Gainesville, FL 32611 USA.
EM dkaplan@ufl.edu
OI Munoz-Carpena, Rafael/0000-0003-2838-1514
FU University of Florida (UF) Gatorade Foundation
FX The authors thank Dr. Wynn Philips and the University of Florida (UF)
Gatorade Foundation for the generous funding to support this research.
This work would not have been possible without the contributions of Paul
Lane, Timothy Townsend, Hwidong Kim (UF) and Julio Tejada, Faelen Tais
Kolln, Maria Floridalma Miguel Ros, Natalia Solano Valverde, Pedro
Bidegaray, and Daniel Sherrard (EARTH University). M. Bachelin thanks
Dr. Andrea Rinaldo (Ecole Polytechnique Federale de Lausanne) for
M.Sc.co-supervision.
NR 57
TC 1
Z9 1
U1 6
U2 26
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0923-4861
EI 1572-9834
J9 WETL ECOL MANAG
JI Wetl. Ecol. Manag.
PD APR
PY 2015
VL 23
IS 2
BP 167
EP 182
DI 10.1007/s11273-014-9367-1
PG 16
WC Environmental Sciences; Water Resources
SC Environmental Sciences & Ecology; Water Resources
GA CF0FM
UT WOS:000352218500005
ER
PT J
AU Booth, DT
Cox, SE
Likins, JC
AF Booth, D. T.
Cox, S. E.
Likins, J. C.
TI Fenceline contrasts: grazing increases wetland surface roughness
SO WETLANDS ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Climate change; Erosion bridge; Hummocks; Land management;
Photogrammetry; Riparian
ID DIGITAL IMAGERY; SYSTEMS
AB A warming earth has lost substantial mountain-stored frozen fresh water, thus generating a pressing need for greater liquid-water storage within upper-elevation riparian systems. Liquid-water storage can be enhanced by avoiding microtopographic channels that facilitate land drainage and rapid runoff. A number of authors have attributed certain forms of wetland hummocks and inter-hummock channels to grazing livestock but there is little evidence in the scientific literature for a cause and effect mechanism. We used comparisons at six fencelines on four meadow and wetland complexes to test the null hypothesis that grazing management makes no difference in hummocks and inter-hummock channels measured as surface roughness. Surface roughness was measured both photogrammetrically (photo) and with an erosion bridge (EB), and the measurements expressed as surface roughness indices (SRIs). Wetland surface roughness inside fenced areas was 44 (EB) and 41 (photo). Wetland surface roughness outside fenced areas was more than 50 % higher (p < 0.0001), measuring 76 (EB, n = 6) and 62 (photo, n = 4). The site with the longest period of conservation management (50+ years) had the lowest inside EB SRI at 27. The two independent measurement methods, EB and photo, yielded similar, correlated results (R = 0.71, n = 8). Historical aerial photography provides supporting evidence for our findings. We reject the null hypothesis and while we suspect macrotopography, hydrology, soil type, and climate are factors in hummock formation, our evidence supports the thesis that hummocks formed surface-down by inter-hummock channels result primarily from grazing by domestic livestock.
C1 [Booth, D. T.] ARS, USDA, High Plains Grasslands Res Stn, Cheyenne, WY 82009 USA.
[Cox, S. E.] Bur Land Management, US Dept Interior, Wyoming State Off, Cheyenne, WY 82009 USA.
[Likins, J. C.] Bur Land Management, US Dept Interior, Lander Field Off, Lander, WY 82520 USA.
RP Booth, DT (reprint author), ARS, USDA, High Plains Grasslands Res Stn, 8408 Hildreth Rd, Cheyenne, WY 82009 USA.
EM Terry.Booth@ars.usda.gov
FU US Department of the Interior, Bureau of Land Management
FX The authors thank Mike Londe and Tom Noble, Bureau of Land Management,
for their assistance in the project. Research was funded by the US
Department of the Interior, Bureau of Land Management and through
volunteer work by Booth and Likins.
NR 31
TC 1
Z9 1
U1 3
U2 10
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0923-4861
EI 1572-9834
J9 WETL ECOL MANAG
JI Wetl. Ecol. Manag.
PD APR
PY 2015
VL 23
IS 2
BP 183
EP 194
DI 10.1007/s11273-014-9368-0
PG 12
WC Environmental Sciences; Water Resources
SC Environmental Sciences & Ecology; Water Resources
GA CF0FM
UT WOS:000352218500006
ER
PT J
AU Moon, J
Liu, ZL
AF Moon, Jaewoong
Liu, Z. Lewis
TI Direct enzyme assay evidence confirms aldehyde reductase function of
Ydr541cp and Ygl039wp from Saccharomyces cerevisiae
SO YEAST
LA English
DT Article
DE aldehyde reductase family; direct enzyme assay; gene annotation; in situ
detoxification; Saccharomyces cerevisiae
ID ALCOHOL-DEHYDROGENASE; YEAST; FERMENTATION; INHIBITION; TOLERANCE;
NADPH; ACID
AB The aldehyde reductase gene ARI1 is a recently characterized member of an intermediate subfamily within the short-chain dehydrogenase/reductase (SDR) superfamily that clarified mechanisms of in situ detoxification of 2-furaldehyde and 5-hydroxymethyl-2-furaldehyde by Saccharomyces cerevisiae. Uncharacterized open reading frames (ORFs) are common among tolerant candidate genes identified for lignocellulose-to-advanced biofuels conversion. This study presents partially purified proteins of two ORFs, YDR541C and YGL039W, and direct enzyme assay evidence against aldehyde-inhibitory compounds commonly encountered during lignocellulosic biomass fermentation processes. Each of the partially purified proteins encoded by these ORFs showed a molecular mass of approximately 38kDa, similar to Ari1p, a protein encoded by aldehyde reductase gene. Both proteins demonstrated strong aldehyde reduction activities toward 14 aldehyde substrates, with high levels of reduction activity for Ydr541cp toward both aromatic and aliphatic aldehydes. While Ydr541cp was observed to have a significantly higher specific enzyme activity at 20 U/mg using co-factor NADPH, Ygl039wp displayed a NADH preference at 25 U/mg in reduction of butylaldehyde. Amino acid sequence analysis identified a characteristic catalytic triad, Ser, Tyr and Lys; a conserved catalytic motif of Tyr-X-X-X-Lys; and a cofactor-binding sequence motif, Gly-X-X-Gly-X-X-Ala, near the N-terminus that are shared by Ydr541cp, Ygl039wp, Yol151wp/GRE2 and Ari1p. Findings of aldehyde reductase genes contribute to the yeast gene annotation and aids development of the next-generation biocatalyst for advanced biofuels production. Copyright (c) 2015 John Wiley & Sons, Ltd.
C1 [Moon, Jaewoong; Liu, Z. Lewis] USDA ARS, BioEnergy Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL USA.
RP Liu, ZL (reprint author), ARS, USDA, Natl Ctr Agr Utilizat Res, 1815 N Univ St, Peoria, IL 61604 USA.
EM ZLewis.Liu@ars.usda.gov
FU National Research Initiative award of the USDA National Institute of
Food and Agriculture [2006-35504-17359]
FX This work was supported in part by the National Research Initiative
award of the USDA National Institute of Food and Agriculture (Project
No. 2006-35504-17359). Mention of trade names or commercial products in
this publication is solely for the purpose of providing specific
information and does not imply recommendation or endorsement by the US
Department of Agriculture. USDA is an equal opportunity provider and
employer.
NR 32
TC 3
Z9 3
U1 2
U2 10
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0749-503X
EI 1097-0061
J9 YEAST
JI Yeast
PD APR
PY 2015
VL 32
IS 4
BP 399
EP 407
DI 10.1002/yea.3067
PG 9
WC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Microbiology; Mycology
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Microbiology; Mycology
GA CF4TH
UT WOS:000352544300003
PM 25656103
ER
PT J
AU Puangbut, D
Jogloy, S
Vorasoot, N
Srijaranai, S
Holbrook, CC
Patanothai, A
AF Puangbut, Darunee
Jogloy, Sanun
Vorasoot, Nimitr
Srijaranai, Supalax
Holbrook, Corley Carl
Patanothai, Aran
TI Variation of inulin content, inulin yield and water use efficiency for
inulin yield in Jerusalem artichoke genotypes under different water
regimes
SO AGRICULTURAL WATER MANAGEMENT
LA English
DT Article
DE Helianthus tuberosus; Genotypic; Drought stress; Fructan
ID HELIANTHUS-TUBEROSUS L.; CICHORIUM-INTYBUS L.; BIOMASS PRODUCTION;
LEAF-AREA; CHICORY; STRESS; GROWTH; ROOT; ENVIRONMENTS; VARIABILITY
AB The information on genotypic variation for inulin content, inulin yield and water use efficiency of inulin yield (WUEi) in response to drought is limited. This study was to investigate the genetic variability in inulin content, inulin yield and WUEi of Jerusalem artichoke (Helianthus tuberosus L.) under different water regimes. A field experiment was conducted for two years during September to January 2010/2011 and 2011/2012. A strip plot design with four replications was used in both years. Horizontal factors were three irrigation levels (W1 =100% evapotranspiration (ET), W2 =75% ET and W3 =45% ET) and vertical factors were 12 Jerusalem artichoke genotypes. Data were recorded for inulin content, inulin yield and WUEi at harvest. Significant differences among Jerusalem artichoke genotypes were observed for inulin content, inulin yield and WUEi under WI, W2 and W3 in both years. There were five genotypes (HEL 253, HEL 53, HEL256, HEL 65 and CN 52867) that exhibited consistently high inulin content and inulin yield across water regimes in both years. Inulin content was increased under W2 conditions but not inulin yield, while WUEi was increased under both W2 and W3 conditions. CN 52867 and HEL 65 were the genotypes with the highest inulin content and inulin yield under limited water conditions in both years. Furthermore, these genotypes showed high WUEi and drought tolerance indices under drought conditions in both years. Improvement of inulin content combined with high WUEi could have contributed to higher inulin yield under limited water conditions. The information on genotypic variation in inulin content and WUEi under drought conditions may have application in genetic improvement of drought resistance in Jerusalem artichoke. (C) 2015 Elsevier B.V. All rights reserved.
C1 [Puangbut, Darunee; Jogloy, Sanun; Vorasoot, Nimitr; Patanothai, Aran] Khon Kaen Univ, Fac Agr, Dept Plant Sci & Agr Resources, Khon Kaen 40002, Thailand.
[Srijaranai, Supalax] Khon Kaen Univ, Fac Sci, Dept Chem, Khon Kaen 40002, Thailand.
[Holbrook, Corley Carl] USDA ARS, Crop Genet & Breeding Res Unit, Coastal Plain Expt Stn, Tifton, GA 31793 USA.
RP Jogloy, S (reprint author), Khon Kaen Univ, Fac Agr, Dept Plant Sci & Agr Resources, Khon Kaen 40002, Thailand.
EM Sanun@kku.ac.th
FU National Research University Project of Thailand, Office of the Higher
Education Commission, through the Food and Functional Food Research
Cluster of Khon Kaen Universitys; Thailand Research Fund; commission for
Higher Education; Khon Kaen University; Higher Education Research
Promotion
FX This work was supported by the Higher Education Research Promotion and
National Research University Project of Thailand, Office of the Higher
Education Commission, through the Food and Functional Food Research
Cluster of Khon Kaen University. We also thank the Leibniz Institute of
Plant Genetics and Crop Plant Research, Germany, the Plant Gene Resource
of Canada for the contribution of Jerusalem artichoke germplasm.
Grateful acknowledgments are made to the Peanut and Jerusalem artichoke
Improvement for Functional Food Research Group and Plant Breeding
Research Center for Sustainable Agriculture, Khon Kaen University.
Grateful acknowledgement is also made to the Thailand Research Fund, the
commission for Higher Education and Khon Kaen University for providing
financial supports to this research through the Distinguished Research
Professor Grant of Professor Dr. Aran Patanothai.
NR 32
TC 0
Z9 0
U1 1
U2 10
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-3774
EI 1873-2283
J9 AGR WATER MANAGE
JI Agric. Water Manage.
PD APR
PY 2015
VL 152
BP 142
EP 150
DI 10.1016/j.agwat.2015.01.005
PG 9
WC Agronomy; Water Resources
SC Agriculture; Water Resources
GA CE4NH
UT WOS:000351806800014
ER
PT J
AU Nam, WH
Choi, JY
Hong, EM
AF Nam, Won-Ho
Choi, Jin-Yong
Hong, Eun-Mi
TI Irrigation vulnerability assessment on agricultural water supply risk
for adaptive management of climate change in South Korea
SO AGRICULTURAL WATER MANAGEMENT
LA English
DT Article
DE Adaptive management; Agricultural reservoirs; Climate change; Irrigation
vulnerability; Reliability analysis; Water supply sustainability
ID RESERVOIR OPERATION; CHANGE IMPACTS; RIVER-BASIN; UNCERTAINTY; SYSTEM;
RELIABILITY; CALIFORNIA; RESOURCES; SCENARIOS; DROUGHT
AB Climate change influences various environmental aspects, including those specifically related to agricultural water resources such as runoff, evapotranspiration, droughts and floods. Understanding the impact of climate change on reservoirs in relation to the passage of time is an important component of water resource management and the maintenance of a stable water supply. In different regions, changes in rainfall and hydrologic patterns due to climate change can increase the occurrences of reservoir water shortages and affect the future availability of agricultural water resources differently. It is a main concern for sustainable development in agricultural water resources management to evaluate the adaptive capability of a water supply under future climate conditions. Studies on climate change impacts and vulnerability assessments have been an essential process for preparing adaptive measures. This paper proposes a practical method to assess water supply vulnerability and sustainability in terms of climate change for the adaptive capability of agricultural reservoirs in South Korea based on a concept of probability theory and reliability analysis using time-dependent change analysis of water supply and demand. The objectives of this study were to investigate if there is evidence of climate change occurrences with respect to potential water supply capacity and irrigation water requirements; and to apply an irrigation vulnerability assessment model to assess the potential effects and predict the impacts of agricultural water demand and supply on reservoir operation to govern local water management decisions under climate variability and change. The irrigation vulnerability was estimated to evaluate the performance of water supplies in agricultural reservoirs; it is a recommended preparatory adaptive measure for developing a future water supply strategy in terms of using climate change scenarios reflecting different future conditions. (C) 2015 Elsevier B.V. All rights reserved.
C1 [Nam, Won-Ho] Univ Nebraska, NDMC, Sch Nat Resources, Lincoln, NE USA.
[Choi, Jin-Yong] Seoul Natl Univ, Dept Rural Syst Engn, Seoul, South Korea.
[Choi, Jin-Yong] Seoul Natl Univ, Res Inst Agr & Life Sci, Seoul, South Korea.
[Hong, Eun-Mi] USDA ARS, Beltsville Agr Res Ctr, Environm Microbial & Food Safety Lab, Beltsville, MD 20705 USA.
RP Choi, JY (reprint author), Seoul Natl Univ, Dept Rural Syst Engn, Seoul, South Korea.
EM iamchoi@snu.ac.kr
RI NAM, WONHO/B-3489-2014
OI NAM, WONHO/0000-0002-9671-6569
FU Basic Science Research Program through the National Research Foundation
of Korea (NRF) - Ministry of Education, Science and Technology
[2013R1A6A3A03019009]
FX This research was supported by Basic Science Research Program through
the National Research Foundation of Korea (NRF) funded by the Ministry
of Education, Science and Technology (2013R1A6A3A03019009). The views
expressed in this paper are those of the authors and do not necessarily
reflect the views of NRF or any of its sub-agencies.
NR 55
TC 9
Z9 9
U1 4
U2 46
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-3774
EI 1873-2283
J9 AGR WATER MANAGE
JI Agric. Water Manage.
PD APR
PY 2015
VL 152
BP 173
EP 187
DI 10.1016/j.agwat.2015.01.012
PG 15
WC Agronomy; Water Resources
SC Agriculture; Water Resources
GA CE4NH
UT WOS:000351806800017
ER
PT J
AU Buelow, MC
Steenwerth, K
Parikh, SJ
AF Buelow, Maya C.
Steenwerth, Kerri
Parikh, Sanjai J.
TI The effect of mineral-ion interactions on soil hydraulic conductivity
SO AGRICULTURAL WATER MANAGEMENT
LA English
DT Article
DE Mineralogy; Salinity; Winery; Wastewater reuse; Vineyard; Irrigation
ID LOW ELECTROLYTE CONCENTRATION; SODIUM-CALCIUM EXCHANGE; SAR-ESP
RELATIONSHIP; NA-CA EXCHANGE; WASTE-WATER; CLAY DISPERSION;
ORGANIC-MATTER; POTASSIUM; SODICITY; WINERY
AB The reuse of winery wastewater (WW) could provide an alternative water source for vineyard irrigation. The shift of many wineries and other food processing industries to K+-based cleaners requires studies on the effects of K+ on soil hydraulic conductivity (HC). Depending on clay content and mineral composition, K+ additions can affect the HC either positively or negatively. Soil mineralogy was anticipated to exhibit a strong influence on HC responses and, therefore, soils of contrasting mineralogy were evaluated for changes in soil HC resulting from applications of solutions elevated in Na+ and K+. To examine the impact of mineral-ion relationships on HC, soils dominant in montmorillonite, vermiculite, or kaolinite from the Napa and Lodi wine regions of California, were packed into soil columns to observe changes in leachate chemistry and HC. Irrigation with Na+- and K+-rich WW was simulated by applying solutions at sodium absorption ratio (SAR) values of 3, 6, and 9 and potassium absorption ratio (PAR) values of 1, 2, 4, and 9. While HC was reduced in the 2:1 clay soils (montmorillonite and vermiculite) for all SAR treatments, the vermiculite and the kaolinite rich soils exhibited equal or greater reductions in HC for PAR treatments, as compared with the SAR treatments. Findings from this evaluation of the interaction of Na+ and K+ with three different mineral soils suggest that the reuse of WW with increasing PAR are least problematic for montmorillonite dominated soils and most detrimental to the HC of the vermiculite dominated soil. The presence of minerals with a high affinity for K+ (e.g., vermiculite, mica) in this soil suggest that the interlayer binding of ICE could lead to greater reductions in HC. Full analysis of soil and WW is recommended prior to all land applications. (C) 2015 Elsevier B.V. All rights reserved.
C1 [Buelow, Maya C.; Parikh, Sanjai J.] Univ Calif Davis, Dept Land Air & Water Resources, Davis, CA 95616 USA.
[Steenwerth, Kerri] USDA ARS, Dept Viticulture & Enol, Crops Pathol & Genet Res Unit, Davis, CA 95616 USA.
RP Parikh, SJ (reprint author), Univ Calif Davis, Dept Land Air & Water Resources, One Shields Ave, Davis, CA 95616 USA.
EM sjparikh@ucdavis.edu
RI Parikh, Sanjai /F-3476-2011
OI Parikh, Sanjai /0000-0002-5260-0417
FU Kearney Foundation of Soil Science [2009.011]; Jastro-Shields
Scholarship funds awarded through the University of California Davis,
Soils and Biogeochemistry Graduate Group
FX Thank you to Randy Dahlgren and Xien Wang for assistance with ion
analysis and to Timothy A. Doan for support with nitrate analysis. Thank
you to the Kearney Foundation of Soil Science, Grant #2009.011, and to
the Henry A. Jastro-Shields Scholarship funds awarded through the
University of California Davis, Soils and Biogeochemistry Graduate
Group.
NR 53
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Z9 6
U1 6
U2 37
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-3774
EI 1873-2283
J9 AGR WATER MANAGE
JI Agric. Water Manage.
PD APR
PY 2015
VL 152
BP 277
EP 285
DI 10.1016/j.agwat.2015.01.015
PG 9
WC Agronomy; Water Resources
SC Agriculture; Water Resources
GA CE4NH
UT WOS:000351806800027
ER
PT J
AU Sigua, GC
Stone, KC
Hunt, PG
Cantrell, KB
Novak, JM
AF Sigua, Gilbert C.
Stone, Kenneth C.
Hunt, Patrick G.
Cantrell, Keri B.
Novak, Jeffrey M.
TI Increasing biomass of winter wheat using sorghum biochars
SO AGRONOMY FOR SUSTAINABLE DEVELOPMENT
LA English
DT Article
DE Sorghum residues; Sorghum biochars; Winter wheat; Aboveground biomass;
Belowground biomass; Ultisols; Coastal Plains
ID RESIDUE PARTICLE-SIZE; DREDGED MATERIALS; NITROGEN MINERALIZATION;
FORAGE PRODUCTIVITY; LAKE PANASOFFKEE; PLANT-GROWTH; SOIL; CHARCOAL;
AGRICULTURE; QUALITY
AB Biochar is a black solid formed by pyrolysis of biomass such as crop residues. Biochar could be used for soil fertilization, carbon sequestration, and improvement of soil structure. Here, we tested the effect of sorghum biochars on winter wheat, with or without supplemental inorganic phosphorus, in a greenhouse. The application rate for sorghum residues and sorghum biochars based on a yield goal of 200 bushels ha(-1) was 13 Mg ha(-1). Inorganic phosphorus was added at the rate of 40 kg P ha(-1). Results show that addition of sorghum biochars increased the total biomass of winter wheat grown by about 31 % over the control plants. Addition of supplemental inorganic phosphorus did not increase the total biomass. Our findings suggest that the pyrolitic transformation of sorghum residues into sorghum biochars is a better strategy for both environmental and crop productivity improvement in the Coastal Plains region.
C1 [Sigua, Gilbert C.; Stone, Kenneth C.; Hunt, Patrick G.; Cantrell, Keri B.; Novak, Jeffrey M.] ARS, Coastal Plains Soil Water & Plant Res Ctr, USDA, Florence, SC 29501 USA.
RP Sigua, GC (reprint author), ARS, Coastal Plains Soil Water & Plant Res Ctr, USDA, 2611 West Lucas St, Florence, SC 29501 USA.
EM gilbert.sigua@ars.usda.gov
NR 33
TC 3
Z9 4
U1 7
U2 41
PU SPRINGER FRANCE
PI PARIS
PA 22 RUE DE PALESTRO, PARIS, 75002, FRANCE
SN 1774-0746
EI 1773-0155
J9 AGRON SUSTAIN DEV
JI Agron. Sustain. Dev.
PD APR
PY 2015
VL 35
IS 2
BP 739
EP 748
DI 10.1007/s13593-014-0253-2
PG 10
WC Agronomy; GREEN & SUSTAINABLE SCIENCE & TECHNOLOGY
SC Agriculture; Science & Technology - Other Topics
GA CE5KF
UT WOS:000351871500023
ER
PT J
AU Yu, L
Sang, W
Wu, MD
Zhang, J
Yang, L
Zhou, YJ
Chen, WD
Li, GQ
AF Yu, Lin
Sang, Wen
Wu, Ming-De
Zhang, Jing
Yang, Long
Zhou, Ying-Jun
Chen, Wei-Dong
Li, Guo-Qing
TI Novel Hypovirulence-Associated RNA Mycovirus in the Plant-Pathogenic
Fungus Botrytis cinerea: Molecular and Biological Characterization
SO APPLIED AND ENVIRONMENTAL MICROBIOLOGY
LA English
DT Article
ID DOUBLE-STRANDED-RNA; CHESTNUT BLIGHT FUNGUS; ROD-SHAPED MYCOVIRUS;
POTEX-LIKE VIRUSES; VEGETATIVE COMPATIBILITY; CRYPHONECTRIA-PARASITICA;
GENOME CHARACTERIZATION; CONFERS HYPOVIRULENCE; SECONDARY STRUCTURE;
FILAMENTOUS FUNGI
AB Botrytis cinerea is a pathogenic fungus causing gray mold on numerous economically important crops and ornamental plants. This study was conducted to characterize the biological and molecular features of a novel RNA mycovirus, Botrytis cinerea RNA virus 1 (BcRV1), in the hypovirulent strain BerBc-1 of B. cinerea. The genome of BcRV1 is 8,952 bp long with two putative overlapped open reading frames (ORFs), ORF1 and ORF2, coding for a hypothetical polypeptide (P1) and RNA-dependent RNA polymerase (RdRp), respectively. A - 1 frameshifting region (designated the KNOT element) containing a shifty heptamer, a heptanucleotide spacer, and an H-type pseudoknot was predicted in the junction region of ORF1 and ORF2. The -1 frameshifting role of the KNOT element was experimentally confirmed through determination of the production of the fusion protein red fluorescent protein (RFP)-green fluorescent protein (GFP) by the plasmid containing the construct dsRed-KNOT-eGFP in Escherichia coli. BcRV1 belongs to a taxonomically unassigned double-stranded RNA (dsRNA) mycovirus group. It is closely related to grapevine-associated totivirus 2 and Sclerotinia sclerotiorum nonsegmented virus L. BcRV1 in strain BerBc-1 was found capable of being transmitted vertically through macroconidia and horizontally to other B. cinerea strains through hyphal contact. The presence of BcRV1 was found to be positively correlated with hypovirulence in B. cinerea, with the attenuation effects of BcRV1 on mycelial growth and pathogenicity being greatly affected by the accumulation level of BcRV1.
C1 [Yu, Lin; Wu, Ming-De; Zhang, Jing; Yang, Long; Zhou, Ying-Jun; Li, Guo-Qing] Huazhong Agr Univ, State Key Lab Agr Microbiol, Key Lab Plant Pathol Hubei Prov, Wuhan, Peoples R China.
[Sang, Wen] Huazhong Agr Univ, Inst Insect Resources, Hubei Insect Resources Utilizat & Sustainable Pes, Wuhan, Peoples R China.
[Chen, Wei-Dong] Washington State Univ, USDA ARS, Pullman, WA 99164 USA.
RP Li, GQ (reprint author), Huazhong Agr Univ, State Key Lab Agr Microbiol, Key Lab Plant Pathol Hubei Prov, Wuhan, Peoples R China.
EM guoqingli@mail.hzau.edu.cn
FU R & D Special Fund for Public Welfare Industry (Agriculture) of China
[201303025]; National Natural Science Foundation of China [31070122,
31301615]
FX This research was funded by the R & D Special Fund for Public Welfare
Industry (Agriculture) of China (grant number 201303025) and the
National Natural Science Foundation of China (grant numbers 31070122 and
31301615).
NR 54
TC 8
Z9 8
U1 7
U2 37
PU AMER SOC MICROBIOLOGY
PI WASHINGTON
PA 1752 N ST NW, WASHINGTON, DC 20036-2904 USA
SN 0099-2240
EI 1098-5336
J9 APPL ENVIRON MICROB
JI Appl. Environ. Microbiol.
PD APR
PY 2015
VL 81
IS 7
BP 2299
EP 2310
DI 10.1128/AEM.03992-14
PG 12
WC Biotechnology & Applied Microbiology; Microbiology
SC Biotechnology & Applied Microbiology; Microbiology
GA CE5AL
UT WOS:000351842000005
PM 25595766
ER
PT J
AU Picklo, MJ
Thyfault, JP
AF Picklo, Matthew J.
Thyfault, John P.
TI Vitamin E and vitamin C do not reduce insulin sensitivity but inhibit
mitochondrial protein expression in exercising obese rats
SO APPLIED PHYSIOLOGY NUTRITION AND METABOLISM
LA English
DT Article
DE insulin resistance; mitochondria; antioxidants; glucose tolerance;
biogenesis; ascorbic acid; tocopherol
ID NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE; HIGH-FAT DIET; SKELETAL-MUSCLE
MITOCHONDRIAL; VISCERAL ADIPOSE-TISSUE; OXIDATIVE STRESS; WEIGHT-LOSS;
ASCORBIC-ACID; METABOLIC SYNDROME; PHYSICAL-ACTIVITY; BODY-COMPOSITION
AB Controversy exists as to whether supplementation with the antioxidants vitamin E and vitamin C blocks adaptation to exercise. Exercise is a first-line means to treat obesity and its complications. While diet-induced obesity alters mitochondrial function and induces insulin resistance (IR), no data exist as to whether supplementation with vitamin E and vitamin C modify responses to exercise in pre-existing obesity. We tested the hypothesis that dietary supplementation with vitamin E (0.4 g alpha-tocopherol acetate/kg) and vitamin C (0.5 g/kg) blocks exercise-induced improvements on IR and mitochondrial content in obese rats maintained on a high-fat (45% fat energy (en)) diet. Diet-induced obese, sedentary rats had a 2-fold higher homeostasis model assessment of insulin resistance and larger insulin area under the curve following glucose tolerances test than rats fed a low-fat (10% fat en) diet. Exercising (12 weeks at 5 times per week in a motorized wheel) of obese rats normalized IR indices, an effect not modified by vitamin E and vitamin C. Vitamin E and vitamin C supplementation with exercise elevated mtDNA content in adipose and skeletal muscle to a greater extent (20%) than exercise alone in a depot-specific manner. On the other hand, vitamin C and vitamin E decreased exercise-induced increases in mitochondrial protein content for complex I (40%) and nicotinamide nucleotide transhydrogenase (35%) in a muscle-dependent manner. These data indicate that vitamin E and vitamin C supplementation in obese rodents does not modify exercise-induced improvements in insulin sensitivity but that changes in mitochondrial biogenesis and mitochondrial protein expression may be modified by antioxidant supplementation.
C1 [Picklo, Matthew J.] ARS, USDA, Grand Forks Human Nutr Res Ctr, Grand Forks, ND 58201 USA.
[Thyfault, John P.] Univ Missouri, Dept Nutr & Exercise Physiol & Med, Div Gastroenterol & Hepatol, Columbia, MO 65212 USA.
RP Picklo, MJ (reprint author), ARS, USDA, Grand Forks Human Nutr Res Ctr, 2420 2nd Ave North, Grand Forks, ND 58201 USA.
EM matthew.picklo@ars.usda.gov
FU USDA-ARS [5450-51000-048-00D]; NIH [RO1DK088940]
FX The authors thank Joseph Idso, Kim Michelsen, and Brian Gregoire for
their excellent technical assistance. Funding was provided through
USDA-ARS Project 5450-51000-048-00D. The U.S. Department of Agriculture,
Agricultural Research Service, Plains Area, is an equal
opportunity/affirmative action employer and all agency services are
available without discrimination. Salary support for J.P.T. was funded
by NIH RO1DK088940. Mention of trade names or commercial products in
this article is solely for providing specific information and does not
imply recommendation or endorsement by the USDA.
NR 70
TC 0
Z9 0
U1 2
U2 6
PU CANADIAN SCIENCE PUBLISHING, NRC RESEARCH PRESS
PI OTTAWA
PA 65 AURIGA DR, SUITE 203, OTTAWA, ON K2E 7W6, CANADA
SN 1715-5312
EI 1715-5320
J9 APPL PHYSIOL NUTR ME
JI Appl. Physiol. Nutr. Metab.
PD APR
PY 2015
VL 40
IS 4
DI 10.1139/apnm-2014-0302
PG 10
WC Nutrition & Dietetics; Physiology; Sport Sciences
SC Nutrition & Dietetics; Physiology; Sport Sciences
GA CE6ME
UT WOS:000351949800005
ER
PT J
AU Glover, R
Drenovsky, RE
Futrell, CJ
Grewell, BJ
AF Glover, Rachael
Drenovsky, Rebecca E.
Futrell, Caryn J.
Grewell, Brenda J.
TI Clonal integration in Ludwigia hexapetala under different light regimes
SO AQUATIC BOTANY
LA English
DT Article
DE Clonal plants; Physiological integration; Resource sharing;
Environmental heterogeneity; Invasive aquatic plant; Ludwigia
ID FRAGARIA-CHILOENSIS; EICHHORNIA-CRASSIPES; PLANTS; GROWTH; PLASTICITY;
BENEFITS; RAMETS; AVAILABILITY; ENVIRONMENTS; MORPHOLOGY
AB Physiological integration among ramets of invasive plant species may support their colonization and spread in novel aquatic environments where growth-limiting resources are spatially heterogeneous. Under contrasting light conditions, we investigated how clonal integration influences growth, biomass allocation and morphology of Ludwigia hexapetala, an emergent floating-leaved macrophyte that is highly invasive in a range of wetland habitat types. In aquatic mesocosms, stolons of offspring ramets were either connected or severed from parent plants, with the pairs exposed to homogenous or heterogeneous combinations of sun or 85% shade. Morphological traits of all ramets were strongly influenced by light environment, and low light availability decreased plant growth, regardless of integration status. Allocation patterns varied with light regime; shaded plants increased allocation to leaf biomass while sun plants allocated more resources to belowground growth. Offspring ramets integrated with parents produced more biomass, suggesting a fitness advantage through integration. However, parent ramet performance declined with stoloniferous integration; integrated parents produced fewer ramets and allocated more resources to belowground biomass. For most response variables measured, there was no significant interactive effect between light treatment and integration, although parents growing in the shade attached to an offspring in the sun increased root mass ratio. The ability to establish and spread into new environments is a key trait of invasive plants, and physiological integration of resources may improve the establishment of juvenile ramets across variable light environments during early colonization. Physiological integration in patchy light environments may contribute to the invasiveness of Ludwigia hexapetala. Published by Elsevier B.V.
C1 [Glover, Rachael; Drenovsky, Rebecca E.] John Carroll Univ, Dept Biol, University Hts, OH 44118 USA.
[Glover, Rachael; Futrell, Caryn J.; Grewell, Brenda J.] Univ Calif Davis, USDA ARS, Exot & Invas Weeds Res Unit, Dept Plant Sci MS 4, Davis, CA 95616 USA.
RP Grewell, BJ (reprint author), Univ Calif Davis, USDA ARS, Exot & Invas Weeds Res Unit, Dept Plant Sci MS 4, Davis, CA 95616 USA.
EM bjgrewell@ucdavis.edu
NR 37
TC 2
Z9 2
U1 1
U2 26
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0304-3770
EI 1879-1522
J9 AQUAT BOT
JI Aquat. Bot.
PD APR
PY 2015
VL 122
BP 40
EP 46
DI 10.1016/j.aquabot.2015.01.004
PG 7
WC Plant Sciences; Marine & Freshwater Biology
SC Plant Sciences; Marine & Freshwater Biology
GA CE9OD
UT WOS:000352172400007
ER
PT J
AU Petersen, LF
Woltz, JM
AF Petersen, Luke F.
Woltz, J. Megan
TI Diel variation in the abundance and composition of the predator
assemblages feeding on aphid-infested soybean
SO BIOCONTROL
LA English
DT Article
DE Soybean aphid; Nocturnal predators; Diurnal predators; Video
surveillance
ID WITHIN-PLANT DISTRIBUTION; TOP-DOWN CONTROL; GLYCINES MATSUMURA;
BIOLOGICAL-CONTROL; POPULATION-GROWTH; ACTIVITY PATTERNS;
ORIUS-INSIDIOSUS; SAMPLING METHODS; SUPPRESSION; HEMIPTERA
AB Many predatory arthropods are nocturnal, yet the potential contribution of nocturnal predators to biological control is often overlooked. The soybean aphid, Aphis glycines Matsumura, has emerged as a significant pest of soybean in the North Central US. Soybean aphid biological control research has focused on diurnal predators. Here, we used video cameras to continuously monitor soybean plants infested with soybean aphids, compare the diurnal and nocturnal predator communities on those plants, and assess predator activity during different times of day. Different predator communities were observed being active on soybean during day and night. Coccinellids and anthocorids dominated the diurnal predator community, while Opiliones and Araneae dominated the nocturnal predator community. Nocturnal and diurnal predators were recorded being active for similar rates per hour. Future research is needed to clarify the significance of arachnid predators and other nocturnal generalists to soybean aphid biocontrol.
C1 [Petersen, Luke F.] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[Woltz, J. Megan] USDA ARS, Hort Crops Res Unit, Corvallis, OR 97330 USA.
RP Woltz, JM (reprint author), USDA ARS, Hort Crops Res Unit, 3420 NW Orchard Ave, Corvallis, OR 97330 USA.
EM LPetersen@ucdavis.edu; Megan.Woltz@gmail.com
FU National Science Foundation Long Term Ecological Research Program;
Michigan State University Distinguished Fellowship; Kellogg Biological
Station Long Term Ecological Research Site Summer Research Fellowship
FX We would like to thank Jim Bronson of the Kellogg Farm and the Kellogg
Biological Station LTER Staff for managing the soybean fields used in
this research. We thank Carly Eakin, Heather Russon, Emily Franklin,
Jeff Shoemaker, and Aaron Adams for field and lab assistance. We are
very grateful to Nate Walton for assistance with video recording
technology. We also thank Dr. Ann Fraser, Emily Franklin, Aaron Rice,
Caitlyn VanGelderen, and three anonymous reviewers for their valuable
comments and suggestions on earlier versions of this manuscript. Funding
for this research was provided by the National Science Foundation Long
Term Ecological Research Program. Funding for Megan Woltz was provided
by a Michigan State University Distinguished Fellowship and a Kellogg
Biological Station Long Term Ecological Research Site Summer Research
Fellowship. Funding for Luke Petersen was provided by the National
Science Foundation Long Term Ecological Research Program.
NR 46
TC 0
Z9 0
U1 2
U2 22
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 1386-6141
EI 1573-8248
J9 BIOCONTROL
JI Biocontrol
PD APR
PY 2015
VL 60
IS 2
BP 209
EP 219
DI 10.1007/s10526-014-9631-6
PG 11
WC Entomology
SC Entomology
GA CE0WS
UT WOS:000351531400007
ER
PT J
AU Brandt, DM
Johnson, PJ
Losey, JE
Catangui, MA
Hesler, LS
AF Brandt, Danielle M.
Johnson, Paul J.
Losey, John E.
Catangui, Michael A.
Hesler, Louis S.
TI Development and survivorship of a predatory lady beetle, Coccinella
novemnotata, on various aphid diets
SO BIOCONTROL
LA English
DT Article
DE Coccinella novemnotata; Coccinellidae; Invasive species; Biological
control; Conservation
ID COLEOPTERA-COCCINELLIDAE; BODY-SIZE; APHIDOPHAGOUS COCCINELLIDAE;
ALFALFA FIELDS; NORTH-AMERICA; SOUTH-DAKOTA; ABUNDANCE; PREY;
POPULATIONS; HOMOPTERA
AB Ex situ rearing of Coccinella novemnotata Herbst (Coleoptera: Coccinellidae), a Nearctic native that has declined precipitously, may be important for experimentation and conservation. Rearing success may depend on optimizing an aphid prey diet. The objective was to compare development, survivorship and adult size of C. novemnotata reared on diets of various aphid (Hemiptera: Aphididae) species. Diets of Acyrthosiphon pisum (Harris) and A. pisum + Rhopalosiphum padi L. were most suitable for rearing C. novemnotata. Single species diets of other aphids had low suitability for C. novemnotata. Combining A. pisum with one of the other aphid species improved diet suitability compared to diets of other species alone. Knowledge of C. novemnotata development and survival on various aphid species may not only aid in ex situ rearing, but could also be used to identify habitats where C. novemnotata may be extant or those with suitable prey for reestablishment or augmentation of C. novemnotata.
C1 [Brandt, Danielle M.; Johnson, Paul J.] S Dakota State Univ, Dept Plant Sci, Brookings, SD 57007 USA.
[Losey, John E.] Cornell Univ, Dept Entomol, Ithaca, NY 14853 USA.
[Hesler, Louis S.] ARS, North Cent Agr Res Lab, USDA, Brookings, SD 57006 USA.
RP Losey, JE (reprint author), Cornell Univ, Dept Entomol, Ithaca, NY 14853 USA.
EM jel27@cornell.edu
FU National Science Foundation [DRL-0741738, 5447-21220-003-00D]
FX Francoise Marie Vermeylen and Cuirong Ren provided statistical advice,
and Eric Beckendorf helped perform statistical tests. Eric Beckendorf,
Mallory Burtz and Corrinna Schwartz assisted with experiments. Jeff
Heinle, Guadalupe Rojas, and Eric Beckendorf reviewed drafts of this
paper. Research was supported by funding from the National Science
Foundation through the Lost Ladybug Project, award number DRL-0741738,
and through base funding to the USDA North Central Agricultural Research
Laboratory, CRIS Project Number 5447-21220-003-00D.
NR 35
TC 0
Z9 0
U1 1
U2 9
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 1386-6141
EI 1573-8248
J9 BIOCONTROL
JI Biocontrol
PD APR
PY 2015
VL 60
IS 2
BP 221
EP 229
DI 10.1007/s10526-014-9635-2
PG 9
WC Entomology
SC Entomology
GA CE0WS
UT WOS:000351531400008
ER
PT J
AU de Castro, AA
Poderoso, JCM
Ribeiro, RC
Legaspi, JC
Serrao, JE
Zanuncio, JC
AF de Castro, Ancideriton A.
Poderoso, Julio Cesar M.
Ribeiro, Rafael C.
Legaspi, Jesusa C.
Serrao, Jose E.
Zanuncio, Jose C.
TI Demographic parameters of the insecticide-exposed predator Podisus
nigrispinus: implications for IPM
SO BIOCONTROL
LA English
DT Article
DE Anticarsia gemmatalis; Asopinae; IPM; Pentatomidae; Risk assessment
ID INTEGRATED PEST-MANAGEMENT; LIFE TABLE PARAMETERS;
HETEROPTERA-PENTATOMIDAE; BENEFICIAL ARTHROPODS; CHRYSOPERLA-CARNEA;
ORIUS-LAEVIGATUS; NOCTUIDAE LARVAE; NATURAL ENEMIES; SUSCEPTIBILITY;
DALLAS
AB The predator Podisus nigrispinus (Dallas) (Heteroptera:Pentatomidae) shows potential for Integrated Pest Management programs of defoliating caterpillars in agricultural and forestry systems. Insecticides can indirectly affect caterpillar predators through consumption of treated prey. We examined the survival, reproductive and demographic parameters of the predator P. nigrispinus fed on caterpillars of Anticarsia gemmatalis (Hubner) (Lepidoptera: Erebidae) fed on soybean leaves previously exposed to four insecticides widely used in this crop, chlorantraniliprole, deltamethrin, methamidophos and spinosad. Caterpillars of A. gemmatalis were fed for 12 h with treated soybean leaves and offered to adults of P. nigrispinus over five consecutive days. Spinosad and methamidophos were proved not compatible with P. nigrispinus in IPM programs in the soybean agro-ecosystem. Deltamethrin showed low toxicity to P. nigrispinus. However, further data may be necessary to recommend it for IPM. Chlorantraniliprole can be considered the most promising because of low toxicity to this predator.
C1 [de Castro, Ancideriton A.; Poderoso, Julio Cesar M.; Zanuncio, Jose C.] Univ Fed Vicosa, Dept Entomol, BR-36570000 Vicosa, MG, Brazil.
[Ribeiro, Rafael C.] Univ Fed Vicosa, Dept Fitotecnia, BR-36570000 Vicosa, MG, Brazil.
[Legaspi, Jesusa C.] Florida A&M Univ, CMAVE, Ctr Biol Control, USDA ARS, Tallahassee, FL 32308 USA.
[Serrao, Jose E.] Univ Fed Vicosa, Dept Biol Geral, BR-36570000 Vicosa, MG, Brazil.
RP de Castro, AA (reprint author), Univ Fed Vicosa, Dept Entomol, BR-36570000 Vicosa, MG, Brazil.
EM anciagro@gmail.com; juliopoderoso@yahoo.com.br; rafael.c.ribeiro@ufv.br;
Jesusa.Legaspi@ars.usda.gov; jeserrao@ufv.br; zanuncio@ufv.br
FU Fundacao de Amparo a Pesquisa do Estado deMinas Gerais (FAPEMIG);
Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES);
Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq)
FX We thank the "Fundacao de Amparo a Pesquisa do Estado deMinas Gerais
(FAPEMIG)", "Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior
(CAPES)" and "Conselho Nacional de Desenvolvimento Cientifico e
Tecnologico (CNPq)" for scholarships and financial support provided.
NR 60
TC 0
Z9 0
U1 12
U2 47
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 1386-6141
EI 1573-8248
J9 BIOCONTROL
JI Biocontrol
PD APR
PY 2015
VL 60
IS 2
BP 231
EP 239
DI 10.1007/s10526-014-9639-y
PG 9
WC Entomology
SC Entomology
GA CE0WS
UT WOS:000351531400009
ER
PT J
AU Yang, M
Parida, S
Salo, T
Hole, K
Velazquez-Salinas, L
Clavijo, A
AF Yang, Ming
Parida, Satya
Salo, Tim
Hole, Kate
Velazquez-Salinas, Lauro
Clavijo, Alfonso
TI Development of a Competitive Enzyme-Linked Immunosorbent Assay for
Detection of Antibodies against the 3B Protein of Foot-and-Mouth Disease
Virus
SO CLINICAL AND VACCINE IMMUNOLOGY
LA English
DT Article
ID DIRECT-CONTACT CHALLENGE; CLASSICAL SWINE-FEVER; BOVINE SERUM PANEL;
NONSTRUCTURAL PROTEINS; VACCINATED ANIMALS; DIFFERENTIATING INFECTION;
SERODIAGNOSTIC STRATEGY; EMERGENCY VACCINATION; SUBCLINICAL INFECTION;
RECOMBINANT PROTEIN
AB Foot-and-mouth disease (FMD) is one of the most highly contagious and economically devastating diseases, and it severely constrains the international trade of animals. Vaccination against FMD is a key element in the control of FMD. However, vaccination of susceptible animals raises critical issues, such as the differentiation of infected animals from vaccinated animals. The current study developed a reliable and rapid test to detect antibodies against the conserved, nonstructural proteins (NSPs) of the FMD virus (FMDV) to distinguish infected animals from vaccinated animals. A monoclonal antibody (MAb) against the FMDV NSP 3B was produced. A competitive enzyme-linked immunosorbent assay (cELISA) for FMDV/NSP antibody detection was developed using a recombinant 3ABC protein as the antigen and the 3B-specific MAb. Sera collected from naive, FMDV experimentally infected, vaccinated carrier, and noncarrier animals were tested using the 3B cELISA. The diagnostic specificity was 99.4% for naive animals (cattle, pigs, and sheep) and 99.7% for vaccinated noncarrier animals. The diagnostic sensitivity was 100% for experimentally inoculated animals and 64% for vaccinated carrier animals. The performance of this 3B cELISA was compared to that of four commercial ELISA kits using a panel of serum samples established by the World Reference Laboratory for FMD at The Pirbright Institute, Pirbright, United Kingdom. The diagnostic sensitivity of the 3B cELISA for the panel of FMDV/NSP-positive bovine serum samples was 94%, which was comparable to or better than that of the commercially available NSP antibody detection kits. This 3B cELISA is a simple, reliable test to detect antibodies against FMDV nonstructural proteins.
C1 [Yang, Ming; Salo, Tim; Hole, Kate; Clavijo, Alfonso] Natl Ctr Foreign Anim Dis, Winnipeg, MB, Canada.
[Parida, Satya] Pirbright Inst, Pirbright, Surrey, England.
[Velazquez-Salinas, Lauro] Comis Mexico Estados Unidos Prevenc Fiebre Aftosa, Mexico City, DF, Mexico.
RP Velazquez-Salinas, L (reprint author), USDA ARS, Plum Isl Anim Dis Ctr, Foreign Anim Dis Res Unit, Orient Point, NY 11957 USA.
EM Alfonso.clavijo@ag.tamu.edu
RI Parida, Satya/E-5463-2015; Institute, Pirbright/K-4476-2014
OI Parida, Satya/0000-0001-8253-9461;
FU Canadian Food Inspection Agency; Department for Environment, Food and
Rural Affairs (DEFRA), United Kingdom at the Pirbright Institute [SE
1125]
FX This work was supported by funds from the Canadian Food Inspection
Agency and the Department for Environment, Food and Rural Affairs
(DEFRA), United Kingdom, through grant SE 1125 at the Pirbright
Institute.
NR 40
TC 1
Z9 1
U1 3
U2 11
PU AMER SOC MICROBIOLOGY
PI WASHINGTON
PA 1752 N ST NW, WASHINGTON, DC 20036-2904 USA
SN 1556-6811
EI 1556-679X
J9 CLIN VACCINE IMMUNOL
JI Clin. Vaccine Immunol.
PD APR
PY 2015
VL 22
IS 4
BP 389
EP 397
DI 10.1128/CVI.00594-14
PG 9
WC Immunology; Infectious Diseases; Microbiology
SC Immunology; Infectious Diseases; Microbiology
GA CE4ZL
UT WOS:000351839200005
PM 25651918
ER
PT J
AU Olsen, SC
McGill, JL
Sacco, RE
Hennager, SG
AF Olsen, S. C.
McGill, J. L.
Sacco, R. E.
Hennager, S. G.
TI Immune Responses of Bison and Efficacy after Booster Vaccination with
Brucella abortus Strain RB51
SO CLINICAL AND VACCINE IMMUNOLOGY
LA English
DT Article
ID BOVINE TUBERCULOSIS; PROTEIN TCPB; PROTECTION; INFECTION; CATTLE;
INTERLEUKIN-1-BETA; PARATUBERCULOSIS; EXPRESSION; SECRETION; DOMAIN
AB Thirty-one bison heifers were randomly assigned to receive saline or a single vaccination with 10(10) CFU of Brucella abortus strain RB51. Some vaccinated bison were randomly selected for booster vaccination with RB51 at 11 months after the initial vaccination. Mean antibody responses to RB51 were greater (P < 0.05) in vaccinated bison after initial and booster vaccination than in nonvaccinated bison. The proliferative responses by peripheral blood mononuclear cells (PBMC) from the vaccinated bison were greater (P < 0.05) than those in the nonvaccinated bison at 16 and 24 weeks after the initial vaccination but not after the booster vaccination. The relative gene expression of gamma interferon (IFN-gamma) was increased (P< 0.05) in the RB51-vaccinated bison at 8, 16, and 24 weeks after the initial vaccination and at 8 weeks after the booster vaccination. The vaccinated bison had greater (P< 0.05) in vitro production of IFN-gamma at all sampling times, greater interleukin-1 beta (IL-1 beta) production in various samplings after the initial and booster vaccinations, and greater IL-6 production at one sampling time after the booster vaccination. Between 170 and 180 days of gestation, the bison were intraconjunctivally challenged with approximately 1 x 10(7) CFU of B. abortus strain 2308. The incidences of abortion and infection were greater (P< 0.05) in the nonvaccinated bison after experimental challenge than in the bison receiving either vaccination treatment. Booster-vaccinated, but not single-vaccinated bison, had a reduced (P< 0.05) incidence of infection in fetal tissues and maternal tissues compared to that in the controls. Compared to the nonvaccinated bison, both vaccination treatments lowered the colonization (measured as the CFU/g of tissue) of Brucella organisms in all tissues, except in retropharyngeal and supramammary lymph nodes. Our study suggests that RB51 booster vaccination is an effective vaccination strategy for enhancing herd immunity against brucellosis in bison.
C1 [Olsen, S. C.] USDA ARS, Natl Anim Dis Ctr, Bacterial Dis Livestock Res Unit, Ames, IA 50010 USA.
[McGill, J. L.; Sacco, R. E.] USDA ARS, Natl Anim Dis Ctr, Ruminant Dis & Immunol Res Unit, Ames, IA 50010 USA.
[Hennager, S. G.] USDA, Natl Vet Serv Labs, Anim & Plant Hlth Inspect Serv, Ames, IA 50010 USA.
RP Olsen, SC (reprint author), USDA ARS, Natl Anim Dis Ctr, Bacterial Dis Livestock Res Unit, POB 70, Ames, IA 50010 USA.
EM solsen@nadc.ars.usda.gov
NR 30
TC 3
Z9 3
U1 4
U2 10
PU AMER SOC MICROBIOLOGY
PI WASHINGTON
PA 1752 N ST NW, WASHINGTON, DC 20036-2904 USA
SN 1556-6811
EI 1556-679X
J9 CLIN VACCINE IMMUNOL
JI Clin. Vaccine Immunol.
PD APR
PY 2015
VL 22
IS 4
BP 440
EP 447
DI 10.1128/CVI.00746-14
PG 8
WC Immunology; Infectious Diseases; Microbiology
SC Immunology; Infectious Diseases; Microbiology
GA CE4ZL
UT WOS:000351839200011
PM 25673305
ER
PT J
AU Geib, JC
Strange, JP
Galen, C
AF Geib, Jennifer C.
Strange, James P.
Galen, Candace
TI Bumble bee nest abundance, foraging distance, and host-plant
reproduction: implications for management and conservation
SO ECOLOGICAL APPLICATIONS
LA English
DT Article
DE alpine ecosystem; Bombus spp., bumble bees; colony density; density
dependence; foraging range; host-plant fecundity; Pennsylvania Mountain,
Colorado, USA; pollination services; pollinator monitoring; spatial
distribution; Trifolium dasyphyllum; Trifolium parryi
ID SUB-ALPINE MEADOWS; SIBSHIP RECONSTRUCTION; GENETIC-MARKERS; FLOWERING
PHENOLOGY; CRESTED BUTTE; FRUIT-SET; DENSITY; POLLINATORS; HYMENOPTERA;
APIDAE
AB Recent reports of global declines in pollinator species imply an urgent need to assess the abundance of native pollinators and density-dependent benefits for linked plants. In this study, we investigated (1) pollinator nest distributions and estimated colony abundances, (2) the relationship between abundances of foraging workers and the number of nests they represent, (3) pollinator foraging ranges, and (4) the relationship between pollinator abundance and plant reproduction. We examined these questions in an alpine ecosystem in the Colorado Rocky Mountains, focusing on four alpine bumble bee species (Bombus balteatus, B. flavifrons, B. bifarius, and B. sylvicola), and two host plants that differ in their degrees of pollinator specialization (Trifolium dasyphyllum and T. parryi).
Using microsatellites, we found that estimated colony abundances among Bombus species ranged from; similar to 18 to 78 colonies/0.01 km(2). The long-tongued species B. balteatus was most common, especially high above treeline, but the subalpine species B. bifarius was unexpectedly abundant for this elevation range. Nests detected among sampled foragers of each species were correlated with the number of foragers caught. Foraging ranges were smaller than expected for all Bombus species, ranging from 25 to 110 m. Fruit set for the specialized plant, Trifolium parryi, was positively related to the abundance of its Bombus pollinator. In contrast, fruit set for the generalized plant, T. dasyphyllum, was related to abundance of all Bombus species. Because forager abundance was related to nest abundance of each Bombus species and was an equally effective predictor of plant fecundity, forager inventories are probably suitable for assessing the health of outcrossing plant populations. However, nest abundance, rather than forager abundance, better reflects demographic and genetic health in populations of eusocial pollinators such as bumble bees. Development of models incorporating the parameters we have measured here (nest abundance, forager abundance, and foraging distance) could increase the usefulness of foraging worker inventories in monitoring, managing, and conserving pollinator populations.
C1 [Geib, Jennifer C.; Galen, Candace] Univ Missouri, Div Biol Sci, Columbia, MO 65211 USA.
[Strange, James P.] Utah State Univ, USDA ARS, Pollinating Insect Res Unit, Logan, UT 84322 USA.
RP Geib, JC (reprint author), Appalachian State Univ, Dept Biol, 572 Rivers St, Boone, NC 28608 USA.
EM geibjc@appstate.edu
FU NSF [DEB-0709833, 1045322]
FX We thank Joyce Knoblett and Jonathan Koch for help with bee
identification and molecular analyses, and Peter Marting for assistance
in the field. We thank Rebecca Irwin, Robert Creed, Alison Brody, and
two anonymous reviewers for insightful comments on the previous drafts
of the manuscript. Data in this paper are from a dissertation submitted
in partial fulfillment of the requirements for PhD at the University of
Missouri Division of Biological Sciences. Research was supported by the
NSF (DEB-0709833 to J. Geib and 1045322 to C. Galen). The USFS provided
access to field sites on Pennsylvania Mountain.
NR 63
TC 4
Z9 4
U1 21
U2 101
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1051-0761
EI 1939-5582
J9 ECOL APPL
JI Ecol. Appl.
PD APR
PY 2015
VL 25
IS 3
BP 768
EP 778
DI 10.1890/14-0151.1
PG 11
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA CE5DE
UT WOS:000351849700016
PM 26214921
ER
PT J
AU Sohngen, B
King, KW
Howard, G
Newton, J
Forster, DL
AF Sohngen, Brent
King, Kevin W.
Howard, Gregory
Newton, John
Forster, D. Lynn
TI Nutrient prices and concentrations in Midwestern agricultural watersheds
SO ECOLOGICAL ECONOMICS
LA English
DT Article
ID MANAGEMENT-PRACTICES; MISSISSIPPI RIVER; PHOSPHORUS; CORN; TRIBUTARIES;
QUALITY; YIELDS; LAKE; OHIO
AB This paper assesses the impact of nutrient prices on nutrient concentrations in agricultural watersheds. Specifically, we find that the price elasticity of nutrient emissions from agricultural watersheds is -0.17 to -0.34, suggesting that a 10% increase in nitrogen or phosphorus prices faced by farmers would lead to up to a 3.4% reduction in nitrogen or phosphorus emissions from a watershed. While this sounds modest, it is about the same size as estimates of the price elasticity of nutrient demand by farmers, a relationship which also is very inelastic. Our results suggest that when prices for nutrients rise, there is a direct effect on nutrient emissions from watersheds. Given recent concerns about phosphorus in Lake Erie, we assess the potential implications of applying a phosphorus usage fee to reduce phosphorus emissions there. We find that a 25% increase in phosphorus prices would reduce nutrient outputs from the three Lake Erie watersheds we modelled by 6.5%, or 210 t phosphorus per year, and cost about $6 ha(-1) yr(-1). These costs are similar to estimates of the costs of reducing phosphorus through waste water treatment plants, and less than the costs of other widely used agricultural best management practices like cover crops. (C) 2015 Elsevier B.V. All rights reserved.
C1 [Sohngen, Brent; Howard, Gregory; Forster, D. Lynn] Ohio State Univ, AED Econ, Columbus, OH 43210 USA.
[King, Kevin W.] USDA ARS, Soil Drainage Res Unit, Columbus, OH 43210 USA.
[Newton, John] Univ Illinois, Dept Agr & Consumer Econ, Urbana, IL 61801 USA.
RP Sohngen, B (reprint author), Ohio State Univ, AED Econ, 322 Agr Adm Bldg,2120 Fyffe Rd, Columbus, OH 43210 USA.
EM sohngen.1@osu.edu
FU Ohio Agricultural Research and Development Center
FX The authors would like to thank the National Center for Water Quality
Research at Heidelberg College for providing the water quality data, and
R. Pete Richards for his guidance on using the water quality data.
Support for this research has been obtained from the Ohio Agricultural
Research and Development Center.
NR 26
TC 2
Z9 2
U1 1
U2 12
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0921-8009
EI 1873-6106
J9 ECOL ECON
JI Ecol. Econ.
PD APR
PY 2015
VL 112
BP 141
EP 149
DI 10.1016/j.ecolecon.2015.02.008
PG 9
WC Ecology; Economics; Environmental Sciences; Environmental Studies
SC Environmental Sciences & Ecology; Business & Economics
GA CE4KA
UT WOS:000351798300014
ER
PT J
AU Ouyang, Y
Cui, LH
Feng, G
Read, J
AF Ouyang, Ying
Cui, Lihua
Feng, Gary
Read, John
TI Simulating phosphorus removal from a vertical-flow constructed wetland
grown with C. alternifolius species
SO ECOLOGICAL ENGINEERING
LA English
DT Article
DE Constructed wetland; Growing plant; P dynamics; STELLA; Vertical flow
ID RIVER
AB Vertical flow constructed wetland (VFCW) is a promising technique for removal of excess nutrients and certain pollutants from wastewaters. The aim of this study was to develop a STELLA (structural thinking, experiential learning laboratory with animation) model for estimating phosphorus (P) removal in an artificial VFCW (i.e., a substrate column with six zones) grown with umbrella papyrus (Cyperus alternifolius) species under a wetting-to-drying cycle. Simulations showed that rate of soluble P (SP) leaching was highest at the top zone (i.e., Zone 1) and decreased gradually with increasing zone number due to the adsorption, clogging, and plant uptake when the SP flowed through the zones. Our simulations further revealed that the best time for an optimal removal of SP from the wastewater was within the first week because the adsorption capacity of the substrate in the VFCW was highest at this time period. In general, the cumulative amounts of total P (TP) were in the following order: adsorption (53.3%) > leaching (13.5%) > uptake (0.49%). Adsorption of P was a major mechanism for P removal from the VFCW system. This study suggested that the STELLA model developed is a useful tool for estimating P removal from wastewater in VFCWs. Published by Elsevier B.V.
C1 [Ouyang, Ying] US Forest Serv, USDA, Ctr Bottomland Hardwoods Res, Mississippi State, MS 39762 USA.
[Cui, Lihua] South China Agr Univ, Coll Nat Resources & Environm Sci, Guangzhou 510642, Guangdong, Peoples R China.
[Feng, Gary; Read, John] USDA ARS, Crop Sci Res Lab, Mississippi State, MS 39762 USA.
RP Ouyang, Y (reprint author), US Forest Serv, USDA, Ctr Bottomland Hardwoods Res, 100 Stone Blvd,Thompson Hall,Room 309, Mississippi State, MS 39762 USA.
EM youyang@fs.fed.us
NR 17
TC 1
Z9 1
U1 6
U2 30
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0925-8574
EI 1872-6992
J9 ECOL ENG
JI Ecol. Eng.
PD APR
PY 2015
VL 77
BP 60
EP 64
DI 10.1016/j.ecoleng.2015.01.004
PG 5
WC Ecology; Engineering, Environmental; Environmental Sciences
SC Environmental Sciences & Ecology; Engineering
GA CE3DL
UT WOS:000351705100009
ER
PT J
AU Batchelor, JL
Ripple, WJ
Wilson, TM
Painter, LE
AF Batchelor, Jonathan L.
Ripple, William J.
Wilson, Todd M.
Painter, Luke E.
TI Restoration of Riparian Areas Following the Removal of Cattle in the
Northwestern Great Basin
SO ENVIRONMENTAL MANAGEMENT
LA English
DT Article
DE Riparian; Grazing; Cattle; Repeat photography; Passive restoration; Hart
Mountain
ID WESTERN UNITED-STATES; NORTHEASTERN OREGON; LIVESTOCK; VEGETATION;
STREAM; YELLOWSTONE; IMPACTS; WILLOW; COMMUNITIES; ECOSYSTEMS
AB We assessed the effects of the elimination of livestock in riparian systems at Hart Mountain National Antelope Refuge in southeastern Oregon, 23 years after the removal of cattle grazing, using 64 photos taken before grazing was removed compared with later retake photos. Two methods were used for this assessment: (1) a qualitative visual method comparing seven cover types and processes and (2) a new quantitative method of inserting digital line transects into photos. Results indicated that channel widths and eroding banks decreased in 64 and 73 % of sites, respectively. We found a 90 % decrease in the amount of bare soil (P < 0.001) and a 63 % decrease in exposed channel (P < 0.001) as well as a significant increase in the cover of grasses/sedges/forbs (15 % increase, P = 0.037), rushes (389 % increase, P = 0.014), and willow (388 % increase, P < 0.001). We also assessed the accuracy of the new method of inserting digital line transects into photo pairs. An overall accuracy of 91 % (kappa 83 %) suggests that digital line transects can be a useful tool for quantifying vegetation cover from photos. Our results indicate that the removal of cattle can result in dramatic changes in riparian vegetation, even in semi-arid landscapes and without replanting or other active restoration efforts.
C1 [Batchelor, Jonathan L.; Ripple, William J.] Oregon State Univ, Dept Forest Ecosyst & Soc, Corvallis, OR 97331 USA.
[Wilson, Todd M.] US Forest Serv, Pacific NW Res Stn, Corvallis, OR 97331 USA.
[Painter, Luke E.] Oregon State Univ, Dept Fisheries & Wildlife, Corvallis, OR 97331 USA.
RP Ripple, WJ (reprint author), Oregon State Univ, Dept Forest Ecosyst & Soc, Corvallis, OR 97331 USA.
EM bill.ripple@oregonstate.edu
FU Greater Hart-Sheldon Conservation Fund; Wilburforce Foundation; Bureau
of Land Management, Oregon State Office; U.S. Forest Service, Pacific
Northwest Research Station
FX We thank those who provided helpful discussions or assistance on this
project including Jeff Mackey, Keely Lopez, Schyler Reis, Ariel Muldoon,
Bill Pyle, Steve Herman, and Boone Kauffman. We also thank Robert
Beschta and David Dobkin for reviewing an early draft, and two anonymous
reviewers. Gail Collins kindly provided refuge data and background
information for this study. Partial funding was provided to WJR by the
Greater Hart-Sheldon Conservation Fund and Wilburforce Foundation, and
to TMW by the Bureau of Land Management, Oregon State Office, and the
U.S. Forest Service, Pacific Northwest Research Station.
NR 44
TC 7
Z9 7
U1 8
U2 50
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0364-152X
EI 1432-1009
J9 ENVIRON MANAGE
JI Environ. Manage.
PD APR
PY 2015
VL 55
IS 4
BP 930
EP 942
DI 10.1007/s00267-014-0436-2
PG 13
WC Environmental Sciences
SC Environmental Sciences & Ecology
GA CE4ZD
UT WOS:000351838300014
PM 25694035
ER
PT J
AU Chintala, R
Owen, RK
Schumacher, TE
Spokas, KA
McDonald, LM
Kumar, S
Clay, DE
Malo, DD
Bleakley, B
AF Chintala, Rajesh
Owen, Rachel K.
Schumacher, Thomas E.
Spokas, Kurt A.
McDonald, Louis M.
Kumar, Sandeep
Clay, David E.
Malo, Douglas D.
Bleakley, Bruce
TI Denitrification kinetics in biomass- and biochar-amended soils of
different landscape positions
SO ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
LA English
DT Article
DE Nitrification; Michaelis-Menten; Activation energy; Enthalpy; Nitrous
oxide; Arrhenius
ID NITROUS-OXIDE EMISSIONS; FILLED PORE-SPACE; N2O EMISSIONS; CROP
RESIDUES; DIFFERENT TEMPERATURES; AGRICULTURAL LANDS; N MINERALIZATION;
NITRATE; WATER; CO2
AB Knowledge of how biochar impacts soil denitrification kinetics as well as the mechanisms of interactions is essential in order to better predict the nitrous oxide (N2O) mitigation capacity of biochar additions. This study had multiple experiments in which the effect of three biochar materials produced from corn stover (Zea mays L.), ponderosa pine wood residue (Pinus ponderosa Douglas ex Lawson and C. Lawson), switchgrass (Panicum virgatum L.), and their corresponding biomass materials (corn stover, ponderosa pine wood residue, and switchgrass) on cumulative N2O emissions and total denitrification in soils from two different landscape positions (crest and footslope) were studied under varying water-filled pore space (40, 70, and 90% WFPS). Cumulative N2O emissions were reduced by 30 to 70% in both crest and footslope soils. The effect of biochars and biomass treatments on cumulative N2O emissions and total denitrification were only observed at >= 40% WFPS. The denitrification enzyme activity (DEA) kinetic parameters, K-s (half-saturation constant), and V-max (maximum DEA rate) were both significantly reduced by biochar treatments, with reductions of 70-80% in footslope soil and 80-90% in the crest soil. The activation energy (E-a) and enthalpy of activation of DEA (Delta H) were both increased with biochar application. The trends in DEA rate constants (K-s and V-max) were correlated by the trends of thermodynamic parameters (activation energy E-a and enthalpy of activation Delta H) for denitrifying enzyme activity (DEA). The rate constant V-max/K-s evaluated the capacity of biochars to mitigate the denitrification process. Denitrifying enzyme kinetic parameters can be useful in evaluating the ability of biochars to mitigate N2O gas losses from soil.
C1 [Chintala, Rajesh; Owen, Rachel K.; Schumacher, Thomas E.; Kumar, Sandeep; Clay, David E.; Malo, Douglas D.] S Dakota State Univ, Dept Plant Sci, Brookings, SD 57006 USA.
[Spokas, Kurt A.] USDA ARS, St Paul, MN USA.
[McDonald, Louis M.] W Virginia Univ, Dept Plant & Soil Sci, Morgantown, WV 26506 USA.
[Bleakley, Bruce] S Dakota State Univ, Dept Biol & Microbiol, Brookings, SD 57006 USA.
RP Chintala, R (reprint author), S Dakota State Univ, Dept Plant Sci, SNP 247,Box 21040C, Brookings, SD 57006 USA.
EM rajesh.chintala@sdstate.edu
RI Spokas, Kurt/F-4839-2016
OI Spokas, Kurt/0000-0002-5049-5959
FU Agriculture and Food Research Initiative Competitive from USDA National
Institute of Food and Agriculture [2011-67009-30076]
FX This project was supported by Agriculture and Food Research Initiative
Competitive Grant no. 2011-67009-30076 from the USDA National Institute
of Food and Agriculture.
NR 73
TC 7
Z9 7
U1 7
U2 56
PU SPRINGER HEIDELBERG
PI HEIDELBERG
PA TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY
SN 0944-1344
EI 1614-7499
J9 ENVIRON SCI POLLUT R
JI Environ. Sci. Pollut. Res.
PD APR
PY 2015
VL 22
IS 7
BP 5152
EP 5163
DI 10.1007/s11356-014-3762-2
PG 12
WC Environmental Sciences
SC Environmental Sciences & Ecology
GA CE1QJ
UT WOS:000351586500033
PM 25369917
ER
PT J
AU Yi, J
Zhang, YZ
Yokoyama, W
Liang, R
Zhong, F
AF Yi, Jiang
Zhang, Yuzhu
Yokoyama, Wallace
Liang, Rong
Zhong, Fang
TI Glycation inhibits trichloroacetic acid (TCA)-induced whey protein
precipitation
SO EUROPEAN FOOD RESEARCH AND TECHNOLOGY
LA English
DT Article
DE Whey protein; Glycation; Saccharides; TCA; Steric hinderance
ID BOVINE PANCREATIC RIBONUCLEASE; FUNCTIONAL-PROPERTIES;
BETA-LACTOGLOBULIN; PROTEOMIC ANALYSIS; MAILLARD REACTION; STABILITY;
MECHANISM; SUGAR
AB Four different WPI saccharide conjugates were successfully prepared to test whether glycation could inhibit WPI precipitation induced by trichloroacetic acid (TCA). Conjugates molecular weights after glycation were analyzed with SDS-PAGE. No significant secondary structure change due to glycation was detected. Glycation decreased the apparent denaturation enthalpy (Delta H) and increased denaturation temperature (T (d)). The TCA-induced WPI precipitation profiles were shown to be U-shaped. The attachment of maltodextrin and dextran increases WPI solubility against TCA-induced precipitation. However, similar effects were not observed when WPI was glycated with monosaccharide (mannose) and disaccharide (maltose), even though the degrees of glycation were significantly higher, compared to WPI-maltodextrin or WPI-dextran conjugates. The effects against precipitation depended on the molecular weight of saccharides, while the effects of the degrees of glycation were not pronounced. Steric hindrance may be the reason to inhibit TCA-induced protein precipitation after glycation. The information of this study provided may extend our knowledge about TCA-induced protein precipitation mechanism.
C1 [Yi, Jiang; Zhong, Fang] Jiangnan Univ, Sch Food Sci & Technol, Key Lab Food Colloids & Biotechnol, Minist Educ, Wuxi 214122, Peoples R China.
[Yi, Jiang; Zhang, Yuzhu; Yokoyama, Wallace] ARS, Western Reg Res Ctr, USDA, Albany, CA 94710 USA.
[Liang, Rong] Jiangnan Univ, Sch Chem & Mat Engn, Key Lab Food Colloids & Biotechnol, Minist Educ, Wuxi 214122, Peoples R China.
RP Zhong, F (reprint author), Jiangnan Univ, Sch Food Sci & Technol, Key Lab Food Colloids & Biotechnol, Minist Educ, Wuxi 214122, Peoples R China.
EM yijiangjnu@gmail.com; fzhong@jiangnan.edu.cn
FU National 125 Program [2011BAD23B02, 2013AA1022207]; NSFC [31171686,
31401533]; NSF-Jiangsu [BK2012556]; 111 Project [B07029]; [PCSIRT0627];
[JUSRP11422]
FX This work was financially supported by National 125 Program
2011BAD23B02, 2013AA1022207; NSFC 31171686 and 31401533;
NSF-Jiangsu-BK2012556; 111 Project B07029; PCSIRT0627 and JUSRP11422.
NR 22
TC 1
Z9 1
U1 2
U2 18
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1438-2377
EI 1438-2385
J9 EUR FOOD RES TECHNOL
JI Eur. Food Res. Technol.
PD APR
PY 2015
VL 240
IS 4
BP 847
EP 852
DI 10.1007/s00217-014-2391-9
PG 6
WC Food Science & Technology
SC Food Science & Technology
GA CD9JI
UT WOS:000351414200019
ER
PT J
AU Rolf, MM
Garrick, DJ
Fountain, T
Ramey, HR
Weaber, RL
Decker, JE
Pollak, EJ
Schnabel, RD
Taylor, JF
AF Rolf, Megan M.
Garrick, Dorian J.
Fountain, Tara
Ramey, Holly R.
Weaber, Robert L.
Decker, Jared E.
Pollak, E. John
Schnabel, Robert D.
Taylor, Jeremy F.
TI Comparison of Bayesian models to estimate direct genomic values in
multi-breed commercial beef cattle
SO GENETICS SELECTION EVOLUTION
LA English
DT Article
ID BRATZLER SHEAR FORCE; CROSS-VALIDATION; SHEEP POPULATION; BOS-TAURUS;
ACCURACY; PREDICTION; TRAITS; SELECTION; INFORMATION; GENOTYPES
AB Background: While several studies have examined the accuracy of direct genomic breeding values (DGV) within and across purebred cattle populations, the accuracy of DGV in crossbred or multi-breed cattle populations has been less well examined. Interest in the use of genomic tools for both selection and management has increased within the hybrid seedstock and commercial cattle sectors and research is needed to determine their efficacy. We predicted DGV for six traits using training populations of various sizes and alternative Bayesian models for a population of 3240 crossbred animals. Our objective was to compare alternate models with different assumptions regarding the distributions of single nucleotide polymorphism (SNP) effects to determine the optimal model for enhancing feasibility of multi-breed DGV prediction for the commercial beef industry.
Results: Realized accuracies ranged from 0.40 to 0.78. Randomly assigning 60 to 70% of animals to training (n approximate to 2000 records) yielded DGV accuracies with the smallest coefficients of variation. Mixture models (BayesB95, BayesC pi) and models that allow SNP effects to be sampled from distributions with unequal variances (BayesA, BayesB95) were advantageous for traits that appear or are known to be influenced by large-effect genes. For other traits, models differed little in prediction accuracy (similar to 0.3 to 0.6%), suggesting that they are mainly controlled by small-effect loci.
Conclusions: The proportion (60 to 70%) of data allocated to training that optimized DGV accuracy and minimized the coefficient of variation of accuracy was similar to large dairy populations. Larger effects were estimated for some SNPs using BayesA and BayesB95 models because they allow unequal SNP variances. This substantially increased DGV accuracy for Warner-Bratzler Shear Force, for which large-effect quantitative trait loci (QTL) are known, while no loss in accuracy was observed for traits that appear to follow the infinitesimal model. Large decreases in accuracy (up to 0.07) occurred when SNPs that presumably tag large-effect QTL were over-regressed towards the mean in BayesC0 analyses. The DGV accuracies achieved here indicate that genomic selection has predictive utility in the commercial beef industry and that using models that reflect the genomic architecture of the trait can have predictive advantages in multi-breed populations.
C1 [Rolf, Megan M.] Oklahoma State Univ, Dept Anim Sci, Stillwater, OK 74078 USA.
[Garrick, Dorian J.] Iowa State Univ, Div Anim Sci, Ames, IA 50011 USA.
[Fountain, Tara; Weaber, Robert L.] Kansas State Univ, Div Anim Sci, Manhattan, KS 66502 USA.
[Ramey, Holly R.; Decker, Jared E.; Schnabel, Robert D.; Taylor, Jeremy F.] Univ Missouri, Div Anim Sci, Columbia, MO 65211 USA.
[Pollak, E. John] ARS, USDA, US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
RP Taylor, JF (reprint author), Univ Missouri, Div Anim Sci, Columbia, MO 65211 USA.
EM taylorjerr@missouri.edu
OI Garrick, Dorian/0000-0001-8640-5372
FU University of Missouri; National Research Initiative from the USDA
Cooperative State Research, Education and Extension Service
[2008-35205-04687, 2008-35205-18864]; National Research Initiative from
the USDA National Institute of Food and Agriculture [2009-65205-05635]
FX We are grateful to the American Angus Association,
American-International Charolais Association, American Hereford
Association, North American Limousin Foundation, and the American
Simmental Association for providing CMP samples and data for this
project. This project was supported by the University of Missouri,
National Research Initiative grants number 2008-35205-04687 and
2008-35205-18864 from the USDA Cooperative State Research, Education and
Extension Service and National Research Initiative grant number
2009-65205-05635 from the USDA National Institute of Food and
Agriculture. Mention of trade names or commercial products in this
article is solely for the purpose of providing specific information and
does not imply recommendation or endorsement by the U.S. Department of
Agriculture.
NR 39
TC 5
Z9 5
U1 0
U2 5
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 0999-193X
EI 1297-9686
J9 GENET SEL EVOL
JI Genet. Sel. Evol.
PD APR 1
PY 2015
VL 47
AR 23
DI 10.1186/s12711-015-0106-8
PG 14
WC Agriculture, Dairy & Animal Science; Genetics & Heredity
SC Agriculture; Genetics & Heredity
GA CE7CP
UT WOS:000351995000001
PM 25884158
ER
PT J
AU Dorich, CD
Varner, RK
Pereira, ABD
Martineau, R
Soder, KJ
Brito, AF
AF Dorich, C. D.
Varner, R. K.
Pereira, A. B. D.
Martineau, R.
Soder, K. J.
Brito, A. F.
TI Short communication: Use of a portable, automated, open-circuit gas
quantification system and the sulfur hexafluoride tracer technique for
measuring enteric methane emissions in Holstein cows fed ad libitum or
restricted
SO JOURNAL OF DAIRY SCIENCE
LA English
DT Article
DE dairy cow; gas quantification system; methane; sulfur hexafluoride
tracer technique
ID DAIRY-COWS; SF6 TRACER; CHAMBER TECHNIQUES; CARBON-DIOXIDE; PERFORMANCE;
RUMINANTS; AIR; FERMENTATION; AMMONIA; DIETS
AB The objective of this study was to measure enteric CH4 emissions using a new portable automated open-circuit gas quantification system (GQS) and the sulfur hexafluoride tracer technique (SF6) in midlactation Holstein cows housed in a tiestall barn. Sixteen cows averaging 176 +/- 34 d in milk, 40.7 +/- 6.1 kg of milk yield, and 685 +/- 49 kg of body weight were randomly assigned to 1 out of 2 treatments according to a cross-over design. Treatments were (1) ad libitum (adjusted daily to yield 10% orts) and (2) restricted feed intake [ set to restrict feed by 10% of baseline dry matter intake (DMI)]. Each experimental period lasted 22 d, with 14 d for treatment adaptation and 8 d for data and sample collection. A common diet was fed to the cows as a total mixed ration and contained 40.4% corn silage, 11.2% grass-legume haylage, and 48.4% concentrate on a dry matter basis. Spot 5-min measurements using the GQS were taken twice daily with a 12-h interval between sampling and sampling times advanced 2 h daily to account for diurnal variation in CH4 emissions. Canisters for the SF6 method were sampled twice daily before milking with 4 local background gas canisters inside the barn analyzed for background gas concentrations. Enteric CH4 emissions were not affected by treatments and averaged 472 and 458 g/d (standard error of the mean = 18 g/d) for ad libitum and restricted intake treatments, respectively (data not shown). The GQS appears to be a reliable method because of the relatively low coefficients of variation (ranging from 14.1 to 22.4%) for CH4 emissions and a moderate relationship (coefficient of determination = 0.42) between CH4 emissions and DMI. The SF6 resulted in large coefficients of variation (ranging from 16.0 to 111%) for CH4 emissions and a poor relationship (coefficient of determination = 0.17) between CH4 emissions and DMI, likely because of limited barn ventilation and high background gas concentration. Research with improved barn ventilation systems or outdoors is warranted to further assess the GQS and SF6 methodologies.
C1 [Dorich, C. D.; Varner, R. K.] Univ New Hampshire, Inst Study Earth Oceans & Space, Durham, NH 03824 USA.
[Dorich, C. D.; Varner, R. K.] Univ New Hampshire, Dept Earth Sci, Durham, NH 03824 USA.
[Pereira, A. B. D.; Brito, A. F.] Univ New Hampshire, Dept Biol Sci, Durham, NH 03824 USA.
[Martineau, R.] Agr & Agri Food Canada, Dairy & Swine Res & Dev Ctr, Sherbrooke, PQ J1M 0C8, Canada.
[Soder, K. J.] USDA ARS, Pasture Syst & Watershed Management Res Unit, University Pk, PA 16802 USA.
RP Brito, AF (reprint author), Univ New Hampshire, Dept Biol Sci, Durham, NH 03824 USA.
EM andre.brito@unh.edu
RI Varner, Ruth/E-5371-2011;
OI Varner, Ruth/0000-0002-3571-6629; Pereira, Andre/0000-0002-4788-0338
FU New Hampshire Agricultural Experiment Station (Durham); USDA-National
Institute of Food and Agriculture (Washington, DC) [2010-51106-21834];
Hatch Multistate NC-1042 [NH00616-R, 1001855]
FX Partial funding was provided by the New Hampshire Agricultural
Experiment Station (Durham). This is Scientific Contribution Number
2591. Research was also supported by USDA-National Institute of Food and
Agriculture (Washington, DC) award (#2010-51106-21834) and Hatch
Multistate NC-1042 (Project Number NH00616-R; Project Accession Number
1001855). The authors also thank University of New Hampshire (Durham
campus) students Kelly S. O'Connor, Alexandra M. Catalano, Alex
Kratzert, and Apryl Perry as well as Milena Lima (Universidade Estadual
de Santa Cruz, Ilheus, Bahia, Brazil) and Daniel Abreu (Universidade
Federal de Vicosa, Vicosa, Minas Gerais, Brazil) for their help in
collecting and analyzing samples. Gratitude is extended to Melissa
Rubano and John Everhart at USDA-Agricultural Research Service, and Pat
and Scott Zimmerman with C-Lock Inc. (Rapid City, SD) for their
technical support.
NR 23
TC 9
Z9 10
U1 5
U2 20
PU ELSEVIER SCIENCE INC
PI NEW YORK
PA 360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA
SN 0022-0302
EI 1525-3198
J9 J DAIRY SCI
JI J. Dairy Sci.
PD APR
PY 2015
VL 98
IS 4
BP 2676
EP 2681
DI 10.3168/jds.2014-8348
PG 6
WC Agriculture, Dairy & Animal Science; Food Science & Technology
SC Agriculture; Food Science & Technology
GA CD8AN
UT WOS:000351317700059
PM 25660738
ER
PT J
AU Cooper, TA
Wiggans, GR
VanRaden, PM
AF Cooper, T. A.
Wiggans, G. R.
VanRaden, P. M.
TI Short communication: Analysis of genomic predictor population for
Holstein dairy cattle in the United States-Effects of sex and age
SO JOURNAL OF DAIRY SCIENCE
LA English
DT Article
DE single nucleotide polymorphism; genomic evaluation; dairy cattle
ID TECHNICAL-NOTE ADJUSTMENT; COW EVALUATIONS; ACCURACY
AB Increased computing time for the ever-growing predictor population and linkage decay between the ancestral population and current animals have become concerns for genomic evaluation systems. The effects on reliability of US genomic evaluations from including cows and bulls in the Holstein predictor population and also from excluding older bulls from the predictor population were examined. Holstein data collected for December 2013 US genomic evaluations were used in cutoff studies to determine reliability gains, regression coefficients, and bias for 5 yield, 3 fitness, 2 fertility, and 18 conformation traits. Three predictor populations were examined based on animal sex: 30,852 cows with traditional evaluations as of August 2012, 21,883 bulls with traditional evaluations as of August 2012, and a combined group of all bulls and cows. Three subsets of the bull predictor population were examined to determine effect of age: bulls born before 1996 excluded (25% of bulls excluded), bulls born before 2001 excluded (50%), and bulls born before 2005 excluded (75%). The validation set for all predictor populations was either bulls or cows first receiving a traditional evaluation between August 2012 and December 2013. Across all traits, the addition of cows to the bull predictor population increased reliability gains by 0.4 percentage points for validation bulls and 4.4 points for validation cows. Across all traits, excluding bulls born before 1996 from the bull-only predictor population decreased gains in genomic reliability by 1.8 percentage points. For 19 of 28 traits, excluding bulls born before 2005 from the predictor population resulted in lower bias in genomic evaluations of validation bulls. Although the contribution of cows and older bulls to improved accuracy of US genomic evaluations is small, a plateau of achievable gain has not yet been reached.
C1 [Cooper, T. A.; Wiggans, G. R.; VanRaden, P. M.] ARS, Anim Genom & Improvement Lab, USDA, Beltsville, MD 20705 USA.
RP Cooper, TA (reprint author), ARS, Anim Genom & Improvement Lab, USDA, Beltsville, MD 20705 USA.
EM Tabatha.Cooper@ars.usda.gov
NR 12
TC 9
Z9 9
U1 0
U2 1
PU ELSEVIER SCIENCE INC
PI NEW YORK
PA 360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA
SN 0022-0302
EI 1525-3198
J9 J DAIRY SCI
JI J. Dairy Sci.
PD APR
PY 2015
VL 98
IS 4
BP 2785
EP 2788
DI 10.3168/jds.2014-8894
PG 4
WC Agriculture, Dairy & Animal Science; Food Science & Technology
SC Agriculture; Food Science & Technology
GA CD8AN
UT WOS:000351317700071
PM 25648811
ER
PT J
AU Strauch, AM
MacKenzie, RA
Giardina, CP
Bruland, GL
AF Strauch, Ayron M.
MacKenzie, Richard A.
Giardina, Christian P.
Bruland, Gregory L.
TI Climate driven changes to rainfall and streamflow patterns in a model
tropical island hydrological system
SO JOURNAL OF HYDROLOGY
LA English
DT Article
DE Hawai'i; Flow regime; Freshwater ecosystems; Tropical streams; Flash
floods; Climate change
ID RIFFLE MACROINVERTEBRATE COMMUNITIES; INTERTROPICAL CONVERGENCE ZONE;
MONTANE CLOUD FORESTS; HAWAIIAN-ISLANDS; PRECIPITATION EXTREMES; SPECIES
COMPOSITION; WATER-RESOURCES; FUTURE CHANGES; FOOD-WEB; VARIABILITY
AB Rising atmospheric CO2 and resulting warming are expected to impact freshwater resources in the tropics, but few studies have documented how natural stream flow regimes in tropical watersheds will respond to changing rainfall patterns. To address this data gap, we utilized a space-for-time substitution across a naturally occurring and highly constrained (i.e., similar geomorphic, abiotic, and biotic features) model hydrological system encompassing a 3000 mm mean annual rainfall (MAR) gradient on Hawaii Island. We monitored stream flow at 15 min intervals in 12 streams across these watersheds for two years (one normal and one dry) and calculated flow metrics describing the flow magnitude, flow variability (e.g., flow flashiness, zero flow days), and flow stability (e.g., deviations from Q(90), daily flow range). A decrease in watershed MAR was associated with increased relative rainfall intensity, a greater number of days with zero rainfall resulting in more days with zero flow, and a decrease in Q(90):Q(50). Flow yield metrics increased with increasing MAR and correlations with MAR were generally stronger in the normal rainfall year compared to the dry year, suggesting that stream flow metrics are less predictable in drier conditions. Compared to the normal rainfall year, during the dry year, Q(50) declined and the number of zero flow days increased, while coefficient of variation increased in most streams despite a decrease in stream flashiness due to fewer high flow events. This suggests that if MAR changes, stream flow regimes in tropical watersheds will also shift, with implications for water supply to downstream users and in stream habitat quality for aquatic organisms. (C) 2015 Elsevier B.V. All rights reserved.
C1 [Strauch, Ayron M.] Univ Hawaii Manoa, Dept Nat Resources & Environm Management, Honolulu, HI 96822 USA.
[MacKenzie, Richard A.; Giardina, Christian P.] USDA Forest Serv, Inst Pacific Islands Forestry, Pacific Southwest Res Stn, Hilo, HI 96720 USA.
[Bruland, Gregory L.] Principia Coll, Biol & Nat Resources Dept, Elsah, IL 62028 USA.
RP Strauch, AM (reprint author), Univ Hawaii Manoa, Dept Nat Resources & Environm Management, 1910 East West Rd,Sherman 101, Honolulu, HI 96822 USA.
EM astrauch@hawaii.edu
RI Giardina, Christian/C-3120-2011;
OI Giardina, Christian/0000-0002-3431-5073; Bruland,
Gregory/0000-0002-3016-8088
FU USDA Forest Service Climate Change Research Program; Pacific Island
Climate Change Cooperative
FX The authors thank P. Foulk, T. Frauendorf, T. Holitzki, M. Riney and T.
Sowards for assistance in the field. R. Fontaine, E. Salminen, R. Eads,
and R. Tingley III provided technical guidance with the development of
this study. Kamehameha Schools-Bishop Estates facilitated access to many
of the study sites and special thanks is given to J. Wong and K. Duarte
for their assistance. Other stake-holders who helped support this
research include N. Tarring and A. Delellis at Honoli'i Mountain Outpost
as well as G. Turner, B. Lowe and R. Uchima. Funding for this project
was provided by the USDA Forest Service Climate Change Research Program
and the Pacific Island Climate Change Cooperative. Finally, this
manuscript benefitted from the input of two anonymous reviewers.
NR 93
TC 4
Z9 4
U1 7
U2 34
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0022-1694
EI 1879-2707
J9 J HYDROL
JI J. Hydrol.
PD APR
PY 2015
VL 523
BP 160
EP 169
DI 10.1016/j.jhydrol.2015.01.045
PG 10
WC Engineering, Civil; Geosciences, Multidisciplinary; Water Resources
SC Engineering; Geology; Water Resources
GA CE6TS
UT WOS:000351971700015
ER
PT J
AU Zhang, FF
Roberts, SB
Parsons, SK
Must, A
Kelly, MJ
Wong, WW
Saltzman, E
AF Zhang, Fang Fang
Roberts, Susan B.
Parsons, Susan K.
Must, Aviva
Kelly, Michael J.
Wong, William W.
Saltzman, Edward
TI Low Levels of Energy Expenditure in Childhood Cancer Survivors:
Implications for Obesity Prevention
SO JOURNAL OF PEDIATRIC HEMATOLOGY ONCOLOGY
LA English
DT Article
DE total energy expenditure; childhood cancer survivors; obesity
ID ACUTE LYMPHOBLASTIC-LEUKEMIA; DOUBLY-LABELED WATER; NUTRITIONAL-STATUS;
PHYSICAL-ACTIVITY; ADULT SURVIVORS; METABOLIC-RATE; MULTIPLE-PASS;
CHILDREN; OVERWEIGHT; VALIDATION
AB Childhood cancer survivors are at an increased risk of obesity but causes for this elevated risk are uncertain. We evaluated total energy expenditure in childhood cancer survivors using the doubly labeled water method in a cross-sectional study of 17 survivors of pediatric leukemia or lymphoma (median age, 11.5 y). Mean total energy expenditure was 2073 kcal/d, which was nearly 500 kcal/d lower than estimated energy requirements with recommended levels of physical activity. This energy gap is likely to contribute to the risk of obesity in this population and future trials are needed to assess implications and potential treatment strategies.
C1 [Zhang, Fang Fang] Tufts Univ, Friedman Sch Nutr Sci & Policy, Dept Nutr Sci, Boston, MA 02111 USA.
[Zhang, Fang Fang] Tufts Univ, Nutr Epidemiol Program, Boston, MA 02111 USA.
[Roberts, Susan B.; Saltzman, Edward] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Energy Metab Lab, Boston, MA 02111 USA.
[Parsons, Susan K.] Tufts Med Ctr, Inst Clin Res & Hlth Policy Studies, Boston, MA USA.
[Kelly, Michael J.] Tufts Med Ctr, Floating Hosp Children, Div Pediat Hematol Oncol, Boston, MA USA.
[Parsons, Susan K.] Tufts Univ, Sch Med, Dept Med, Boston, MA 02111 USA.
[Parsons, Susan K.; Kelly, Michael J.] Tufts Univ, Sch Med, Dept Pediat, Boston, MA 02111 USA.
[Must, Aviva] Tufts Univ, Sch Med, Dept Publ Hlth & Community Med, Boston, MA 02111 USA.
[Wong, William W.] ARS, Baylor Coll Med, USDA, Childrens Nutr Res Ctr, Houston, TX USA.
RP Zhang, FF (reprint author), Tufts Univ, Friedman Sch Nutr Sci & Policy, Dept Nutr Sci, 150 Harrison Ave, Boston, MA 02111 USA.
EM fang_fang.zhang@tufts.edu
FU Boston Nutrition Obesity Research Center [P30DK46200]; National Center
for Research Resources [UL1 RR025752]; National Center for Advancing
Translational Sciences; National Institutes of Health [UL1 TR000073]
FX All phases of this study were supported by the Boston Nutrition Obesity
Research Center Grant Number P30DK46200, the National Center for
Research Resources Grant Number UL1 RR025752, the National Center for
Advancing Translational Sciences, and the National Institutes of Health
Grant Number UL1 TR000073.
NR 32
TC 2
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U1 2
U2 6
PU LIPPINCOTT WILLIAMS & WILKINS
PI PHILADELPHIA
PA TWO COMMERCE SQ, 2001 MARKET ST, PHILADELPHIA, PA 19103 USA
SN 1077-4114
EI 1536-3678
J9 J PEDIAT HEMATOL ONC
JI J. Pediatr. Hematol. Oncol.
PD APR
PY 2015
VL 37
IS 3
BP 232
EP 236
PG 5
WC Oncology; Hematology; Pediatrics
SC Oncology; Hematology; Pediatrics
GA CE3EK
UT WOS:000351708300034
PM 25197775
ER
PT J
AU Zimmerman, DR
Koszewski, NJ
Hoy, DA
Goff, JP
Horst, RL
AF Zimmerman, Duane R.
Koszewski, Nicholas J.
Hoy, Derrel A.
Goff, Jesse P.
Horst, Ronald L.
TI Targeted delivery of 1,25-dihydroxyvitamin D-3 to colon tissue and
identification of a major 1,25-dihydroxyvitamin D-3 glycoside from
Solanum glaucophyllum plant leaves
SO JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY
LA English
DT Review
DE 1,25-Dihydroxyvitamin D3; Colon; Gene expression; Hypercalcemia
ID INFLAMMATORY-BOWEL-DISEASE; VITAMIN-D-RECEPTOR; BETA-D-GLUCOPYRANOSIDES;
GENE-EXPRESSION; MALACOXYLON; CANCER; INTESTINE; D3; ASSOCIATION;
METABOLITES
AB Leaves of the Solanum glaucophyllum (Sg) plant, indigenous to South America, have long been known for their calcinogenic toxicity in ruminant animals. It was determined the leaves contained glycosidic derivatives of 1,25-dihydroxyvitamin D-3 (1,25D(3)) and liberation of the free hormone by rumen bacterial populations elicited a hypercalcemic response. Our interest in the leaves is predicated on the concept that the glycoside forms of 1,25D3 would target release of the active hormone in the lower gut of non-ruminant mammals. This would provide a means of delivering 1,25D3 directly to the colon, where the hormone has been shown to have beneficial effects in models of inflammatory bowel disease (IBD) and colon cancer. We fed mice for 10 days with variable amounts of Sg leaf. Feeding 7-333 mu g leaf/day produced no changes in plasma Ca2+ and 1,25D(3) concentrations, and only at >= 1000 mu g leaf/day did these values become significantly elevated compared to controls. Gene expression studies from colon tissue indicated a linear relationship between the amount of leaf consumed and expression of the Cyp24a1 gene. In contrast, Cyp24a1 gene expression in the duodenums and ileums of these mice was unchanged compared to controls. One of the major 1,25D(3)-glycosides was isolated from leaves following extraction and purification by Sep-Pak cartridges and HPLC fractionation. Ultraviolet absorbance was consistent with modification of the 1-hydroxyl group, and positive ion ESI mass spectrometry indicated a diglycoside of 1,25D3. 2-Dimensional NMR analyses were carried out and established the Cl proton of the A-ring was interacting with a C1' sugar proton, while the C3 proton of the A-ring was linked with a second Cl' sugar proton. The structure of the isolated compound is therefore consistent with a beta-linked 1,3-diglycoside of 1,25D3. Thus, Sg leaf administered to mice at up to 333 ug/day can elicit colon-specific enhancement of Cyp24a1 gene expression without inducing hypercalcemia, and the 1,3-diglycoside is one of the major forms of 1,25 03 found in the leaf. (C) 2014 Elsevier Ltd. All rights reserved.
C1 [Zimmerman, Duane R.; Hoy, Derrel A.; Horst, Ronald L.] USDA ARS, Natl Anim Dis Ctr, Ruminant Dis & Immunol Res Unit, Ames, IA 50010 USA.
[Koszewski, Nicholas J.; Goff, Jesse P.] Iowa State Univ, Coll Vet Med, Dept Biomed Sci, Ames, IA 50011 USA.
RP Koszewski, NJ (reprint author), Iowa State Univ, Coll Vet Med, Dept Biomed Sci, Ames, IA 50011 USA.
EM nickkos1@iastate.edu
FU National Institutes of Health [R15CA173628]
FX The authors would like to thank C. Martens for excellent technical
assistance in the completion of this study. This work was supported in
part by National Institutes of Health grant R15CA173628.
NR 54
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U1 6
U2 19
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0960-0760
J9 J STEROID BIOCHEM
JI J. Steroid Biochem. Mol. Biol.
PD APR
PY 2015
VL 148
SI SI
BP 318
EP 325
DI 10.1016/j.jsbmb.2014.10.019
PG 8
WC Biochemistry & Molecular Biology; Endocrinology & Metabolism
SC Biochemistry & Molecular Biology; Endocrinology & Metabolism
GA CE4FJ
UT WOS:000351786200048
PM 25445916
ER
PT J
AU Leone, A
Gavey, E
Holland, C
AF Leone, Angela
Gavey, Erica
Holland, Corey
TI Celebrate National Workplace Wellness Week Using the Worksite Wellness
Toolkit
SO JOURNAL OF THE ACADEMY OF NUTRITION AND DIETETICS
LA English
DT Editorial Material
C1 [Leone, Angela] USDA, Off Nutr Mkt & Commun, Ctr Nutr Policy & Promot, Alexandria, VA 22302 USA.
[Gavey, Erica; Holland, Corey] Panum Grp, Bethesda, MD USA.
RP Leone, A (reprint author), USDA, Off Nutr Mkt & Commun, Ctr Nutr Policy & Promot, Alexandria, VA 22302 USA.
NR 0
TC 0
Z9 0
U1 1
U2 2
PU ELSEVIER SCIENCE INC
PI NEW YORK
PA 360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA
SN 2212-2672
EI 2212-2680
J9 J ACAD NUTR DIET
JI J. Acad. Nutr. Diet.
PD APR
PY 2015
VL 115
IS 4
BP 497
EP 498
DI 10.1016/j.jand.2015.02.005
PG 2
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA CE4CS
UT WOS:000351779000002
PM 25819515
ER
PT J
AU Viguria, M
Ro, KS
Stone, KC
Johnson, MH
AF Viguria, Maialen
Ro, Kyoung S.
Stone, Kenneth C.
Johnson, Melvin H.
TI Accuracy of vertical radial plume mapping technique in measuring lagoon
gas emissions
SO JOURNAL OF THE AIR & WASTE MANAGEMENT ASSOCIATION
LA English
DT Article
ID INVERSE-DISPERSION TECHNIQUE; METHANE EMISSIONS; AMMONIA EMISSIONS;
NITROUS-OXIDE; SWINE LAGOONS; PIG SLURRY; ATMOSPHERE; STORAGE
AB Recently, the U.S. Environmental Protection Agency (EPA) posted a ground-based optical remote sensing method on its Web site called Other Test Method (OTM) 10 for measuring fugitive gas emission flux from area sources such as closed landfills. The OTM 10 utilizes the vertical radial plume mapping (VRPM) technique to calculate fugitive gas emission mass rates based on measured wind speed profiles and path-integrated gas concentrations (PICs). This study evaluates the accuracy of the VRPM technique in measuring gas emission from animal waste treatment lagoons. A field trial was designed to evaluate the accuracy of the VRPM technique. Control releases of methane (CH4) were made from a 45 m x 45 m floating perforated pipe network located on an irrigation pond that resembled typical treatment lagoon environments. The accuracy of the VRPM technique was expressed by the ratio of the calculated emission rates (Q(VRPM)) to actual emission rates (Q). Under an ideal condition of having mean wind directions mostly normal to a downwind vertical plane, the average VRPM accuracy was 0.77 0.32. However, when mean wind direction was mostly not normal to the downwind vertical plane, the emission plume was not adequately captured resulting in lower accuracies. The accuracies of these nonideal wind conditions could be significantly improved if we relaxed the VRPM wind direction criteria and combined the emission rates determined from two adjacent downwind vertical planes surrounding the lagoon. With this modification, the VRPM accuracy improved to 0.97 +/- 0.44, whereas the number of valid data sets also increased from 113 to 186.Implications:The need for developing accurate and feasible measuring techniques for fugitive gas emission from animal waste lagoons is vital for livestock gas inventories and implementation of mitigation strategies. This field lagoon gas emission study demonstrated that the EPA's vertical radial plume mapping (VRPM) technique can be used to accurately measure lagoon gas emission with two downwind vertical concentration planes surrounding the lagoon.
C1 [Viguria, Maialen] Basque Inst Agr Res & Dev, NEIKER Tecnalia, Environm Engn, Derio, Bizkaia, Spain.
[Ro, Kyoung S.; Stone, Kenneth C.; Johnson, Melvin H.] USDA ARS, Coastal Plains Soil Water & Plant Res Ctr, Florence, SC 29501 USA.
RP Ro, KS (reprint author), USDA ARS, Coastal Plains Soil Water & Plant Res Ctr, 2611 W Lucas St, Florence, SC 29501 USA.
EM Kyoung.Ro@ars.usda.gov
FU Department of Education, Universities and Research of the Basque
Government
FX This research is part of the USDA-ARS National Programs 211 Water
Availability and Watershed Management and 214 Agricultural and
Industrial Byproduct Utilization. Maialen Viguria holds a grant from the
Ph.D. student research program of the Department of Education,
Universities and Research of the Basque Government.
NR 29
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U1 3
U2 18
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 530 WALNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 1096-2247
EI 2162-2906
J9 J AIR WASTE MANAGE
JI J. Air Waste Manage. Assoc.
PD APR
PY 2015
VL 65
IS 4
BP 395
EP 403
DI 10.1080/10962247.2014.996267
PG 9
WC Engineering, Environmental; Environmental Sciences; Meteorology &
Atmospheric Sciences
SC Engineering; Environmental Sciences & Ecology; Meteorology & Atmospheric
Sciences
GA CE7LQ
UT WOS:000352022300003
PM 25947209
ER
PT J
AU Svensson, SL
Hyunh, S
Parker, CT
Gaynor, EC
AF Svensson, Sarah L.
Hyunh, Steven
Parker, Craig T.
Gaynor, Erin C.
TI The Campylobacter jejuni CprRS two-component regulatory system regulates
aspects of the cell envelope
SO MOLECULAR MICROBIOLOGY
LA English
DT Article
ID VIRULENCE-ASSOCIATED PHENOTYPES; SIGNAL-TRANSDUCTION PATHWAY; IN-VITRO
GROWTH; BIOFILM FORMATION; RESPONSE REGULATOR; THERMOPHILIC
CAMPYLOBACTER; HELICOBACTER-PYLORI; ESCHERICHIA-COLI; STATIONARY-PHASE;
STRESS SURVIVAL
AB Campylobacter jejuni is a leading cause of food-borne gastroenteritis in humans. It lives commensally in the gastrointestinal tract of animals, and tolerates variable conditions during transit/colonization of susceptible hosts. The C.jejuniCprRS two-component system contains an essential response regulator (CprR), and deletion of the cprS sensor kinase enhances biofilms. We sought to identify CprRS-regulated genes and better understand how the system affects survival. Expression from the cprR promoter was highest during logarithmic growth and dependent on CprS. CprR(D52A) did not support viability, indicating that CprR phosphorylation is essential despite the dispensability of CprS. We identified a GTAAAC consensus bound by the CprR C-terminus; the Asp52 residue of full-length CprR was required for binding, suggesting phosphorylation is required. Transcripts differing in expression in cprS compared with wildtype (WT) contained a putative CprR binding site upstream of their promoter region and encoded htrA (periplasmic protease upstream of cprRS) and peb4 (SurA-like chaperone). Consistent with direct regulation, the CprR consensus in the htrA promoter was bound by CprR(CTD). Finally, htrA formed enhanced biofilms, and cprS biofilms were suppressed by Mg2+. CprRS is the first C.jejuni regulatory system shown to control genes related to the cell envelope, the first line of interaction between pathogen and changing environments.
C1 [Svensson, Sarah L.; Gaynor, Erin C.] Univ British Columbia, Dept Microbiol & Immunol, Vancouver, BC V5Z 1M9, Canada.
[Hyunh, Steven; Parker, Craig T.] ARS, Prod Safety & Microbiol Res Unit, USDA, Albany, CA USA.
RP Gaynor, EC (reprint author), Univ British Columbia, Dept Microbiol & Immunol, Vancouver, BC V5Z 1M9, Canada.
EM egaynor@mail.ubc.ca
OI Svensson, Sarah/0000-0002-3183-6084
FU Michael Smith Foundation for Health Research; Canada Research Chair
Award; Burroughs Wellcome Center Career Development Award; Canadian
Institutes of Health Research [MOP-68981]; Natural Sciences and
Engineering Research Council of Canada [F11-05378]; United States
Department of Agriculture Agricultural Research Service CRIS Project
[5325-4200-47]
FX The authors thank Dmitry Apel for the pRY112-lux plasmid, as well as
Gaurav Dugar and Cynthia Sharma for generously sharing C. jejuni RNA-seq
data before publication. S.L.S. is supported by a Senior Graduate
Traineeship from the Michael Smith Foundation for Health Research.
E.C.G. is supported by a Canada Research Chair Award. This work was
funded by a Burroughs Wellcome Center Career Development Award, Canadian
Institutes of Health Research grant MOP-68981, and Natural Sciences and
Engineering Research Council of Canada grant F11-05378 to E.C.G. S.H.
and C.T.P. were funded by the United States Department of Agriculture
Agricultural Research Service CRIS Project 5325-4200-47.
NR 87
TC 4
Z9 6
U1 1
U2 10
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0950-382X
EI 1365-2958
J9 MOL MICROBIOL
JI Mol. Microbiol.
PD APR
PY 2015
VL 96
IS 1
BP 189
EP 209
DI 10.1111/mmi.12927
PG 21
WC Biochemistry & Molecular Biology; Microbiology
SC Biochemistry & Molecular Biology; Microbiology
GA CE5BT
UT WOS:000351845600015
PM 25582441
ER
PT J
AU Hollender, CA
Dardick, C
AF Hollender, Courtney A.
Dardick, Chris
TI Molecular basis of angiosperm tree architecture
SO NEW PHYTOLOGIST
LA English
DT Review
DE compact; dwarf; growth habits; pillar; shoot architecture; tree
genetics; weeping
ID MALUS-X-DOMESTICA; PEACH PRUNUS-PERSICA; COLUMNAR GROWTH HABIT; APICAL
DOMINANCE; APPLE-TREES; SHOOT GRAVITROPISM; GREEN-REVOLUTION; GENOME
SEQUENCE; DRAFT GENOME; PLANT ARCHITECTURE
AB The architecture of trees greatly impacts the productivity of orchards and forestry plantations. Amassing greater knowledge on the molecular genetics that underlie tree form can benefit these industries, as well as contribute to basic knowledge of plant developmental biology. This review describes the fundamental components of branch architecture, a prominent aspect of tree structure, as well as genetic and hormonal influences inferred from studies in model plant systems and from trees with non-standard architectures. The bulk of the molecular and genetic data described here is from studies of fruit trees and poplar, as these species have been the primary subjects of investigation in this field of science.
C1 [Hollender, Courtney A.; Dardick, Chris] USDA ARS, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
RP Dardick, C (reprint author), USDA ARS, Appalachian Fruit Res Stn, 2217 Wiltshire Rd, Kearneysville, WV 25430 USA.
EM Chris.Dardick@ars.usda.gov
FU Agriculture and Food Research Initiative from USDA National Institute of
Food and Agriculture [10891264]
FX The authors would like to acknowledge the researchers whose
contributions to this field we were unable to cite as a result of
spatial constraints. In addition, we are indebted to our reviewers for
extremely helpful comments that significantly improved the quality and
content of the paper. We also thank Dr Tom Tworkoski for his insight and
discussion on apple tree architecture, and Dr Ralph Scorza for helpful
suggestions and edits of the manuscript. This work was supported by
Agriculture and Food Research Initiative competitive grant 10891264 from
the USDA National Institute of Food and Agriculture.
NR 179
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Z9 8
U1 10
U2 67
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0028-646X
EI 1469-8137
J9 NEW PHYTOL
JI New Phytol.
PD APR
PY 2015
VL 206
IS 2
BP 541
EP 556
DI 10.1111/nph.13204
PG 16
WC Plant Sciences
SC Plant Sciences
GA CE3QD
UT WOS:000351742300009
PM 25483362
ER
PT J
AU Richardson, AD
Carbone, MS
Huggett, BA
Furze, ME
Czimczik, CI
Walker, JC
Xu, XM
Schaberg, PG
Murakami, P
AF Richardson, Andrew D.
Carbone, Mariah S.
Huggett, Brett A.
Furze, Morgan E.
Czimczik, Claudia I.
Walker, Jennifer C.
Xu, Xiaomei
Schaberg, Paul G.
Murakami, Paula
TI Distribution and mixing of old and new nonstructural carbon in two
temperate trees
SO NEW PHYTOLOGIST
LA English
DT Article
DE carbohydrates; carbon allocation; Harvard Forest; radiocarbon (C-14);
storage; tree rings; wood
ID FOREST TREES; CARBOHYDRATE RESERVES; SEASONAL DYNAMICS; FAGUS-SYLVATICA;
TROPICAL FOREST; ALLOCATION; RADIOCARBON; CANOPY; GROWTH; POOLS
AB We know surprisingly little about whole-tree nonstructural carbon (NSC; primarily sugars and starch) budgets. Even less well understood is the mixing between recent photosynthetic assimilates (new NSC) and previously stored reserves. And, NSC turnover times are poorly constrained. We characterized the distribution of NSC in the stemwood, branches, and roots of two temperate trees, and we used the continuous label offered by the radiocarbon (carbon-14, C-14) bomb spike to estimate the mean age of NSC in different tissues. NSC in branches and the outermost stemwood growth rings had the C-14 signature of the current growing season. However, NSC in older aboveground and belowground tissues was enriched in C-14, indicating that it was produced from older assimilates. Radial patterns of C-14 in stemwood NSC showed strong mixing of NSC across the youngest growth rings, with limited mixing in' of younger NSC to older rings. Sugars in the outermost five growth rings, accounting for two-thirds of the stemwood pool, had a mean age <1yr, whereas sugars in older growth rings had a mean age >5yr. Our results are thus consistent with a previously-hypothesized two-pool (fast' and slow' cycling NSC) model structure. These pools appear to be physically distinct.
C1 [Richardson, Andrew D.; Carbone, Mariah S.; Huggett, Brett A.; Furze, Morgan E.] Harvard Univ, Dept Organism & Evolutionary Biol, Cambridge, MA 02138 USA.
[Carbone, Mariah S.] Univ New Hampshire, Earth Syst Res Ctr, Durham, NH 03824 USA.
[Huggett, Brett A.] Bates Coll, Dept Biol, Lewiston, ME 04240 USA.
[Czimczik, Claudia I.; Walker, Jennifer C.; Xu, Xiaomei] Univ Calif Irvine, Dept Earth Syst Sci, Irvine, CA 92697 USA.
[Schaberg, Paul G.; Murakami, Paula] US Forest Serv, USDA, No Res Stn, Burlington, VT 05405 USA.
RP Richardson, AD (reprint author), Harvard Univ, Dept Organism & Evolutionary Biol, Cambridge, MA 02138 USA.
EM arichardson@oeb.harvard.edu
RI Richardson, Andrew/F-5691-2011
OI Richardson, Andrew/0000-0002-0148-6714
FU National Science Foundation through Long-Term Ecological Research
program [DEB-1237491]; US Forest Service Northern Research Station
FX The authors thank A. Barker-Plotkin for assistance in locating a
suitable stand in which to conduct field collections. A.D.R.
acknowledges support for research at Harvard Forest from the National
Science Foundation through the Long-Term Ecological Research program
(grant DEB-1237491). This work was partially supported by the US Forest
Service Northern Research Station. Trevor Keenan is thanked for
providing feedback on a draft of the manuscript.
NR 41
TC 16
Z9 16
U1 13
U2 78
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0028-646X
EI 1469-8137
J9 NEW PHYTOL
JI New Phytol.
PD APR
PY 2015
VL 206
IS 2
BP 590
EP 597
DI 10.1111/nph.13273
PG 8
WC Plant Sciences
SC Plant Sciences
GA CE3QD
UT WOS:000351742300014
PM 25558814
ER
PT J
AU Hairgrove, T
Schroeder, ME
Budke, CM
Rodgers, S
Chung, C
Ueti, MW
Bounpheng, MA
AF Hairgrove, Thomas
Schroeder, Megan E.
Budke, Christine M.
Rodgers, Sandy
Chung, Chungwon
Ueti, Massaro W.
Bounpheng, Mangkey A.
TI Molecular and serological in-herd prevalence of Anaplasma marginale
infection in Texas cattle
SO PREVENTIVE VETERINARY MEDICINE
LA English
DT Article
DE Anaplasma marginale; RT-qPCR; cELISA; Prevalence
ID BOVINE ANAPLASMOSIS; CROSS-REACTIVITY; TIME; PHAGOCYTOPHILUM;
TRANSMISSION; ALIGNMENT; SEQUENCE; ALPACA; STEERS; TICK
AB Bovine anaplasmosis is an infectious, non-contagious disease caused by the rickettsial pathogen Anaplasma marginate (Anaplasma marginate). The organism has a global distribution and infects erythrocytes, resulting in anemia, jaundice, fever, abortions and death. Once infected, animals remain carriers for life. The carrier status provides immunity to clinical disease, but is problematic if infected and naive cattle are comingled. Knowledge of infection prevalence and spatial distribution is important in disease management. The objective of this study was to assess Anaplasma marginate infection in-herd prevalence in Texas cattle using both molecular and serological methods. Blood samples from 11 cattle herds within Texas were collected and analyzed by reverse transcription quantitative real-time PCR (RT-qPCR) and a commercial competitive enzyme-linked immunosorbent assay (cELISA). Samples from experimentally infected animals were also analyzed and RT-qPCR detected Anaplasma marginate infection up to 15 days before cELISA, providing empirical data to support the interpretation of herd prevalence results. Herds with high prevalence were located in the north Texas Rolling Plains and west Trans-Pecos Desert, with RT-qPCR prevalence as high as 82% and cELISA prevalence as high as 88%. Overall prevalence was significantly higher in cattle in north and west Texas compared to cattle in east Texas (p < 0.0001 for prevalence based on both RT-qPCR and cELISA). The overall RT-qPCR and cELISA results exhibited 90% agreement (kappa = 0.79) and provide the first Anaplasma marginate infection prevalence study for Texas cattle using two diagnostic methods. Since cattle are the most important reservoir host for Anaplasma marginate and can serve as a source of infection for tick and mechanical transmission, information on infection prevalence is beneficial in the development of prevention and control strategies. (C) 2015 Elsevier B.V. All rights reserved.
C1 [Hairgrove, Thomas] Kleberg Ctr, Dept Anim Sci, Texas A&M AgriLife Extens Serv, College Stn, TX 77843 USA.
[Schroeder, Megan E.; Rodgers, Sandy; Bounpheng, Mangkey A.] Texas A&M Vet Med Diagnost Lab, College Stn, TX 77843 USA.
[Budke, Christine M.] Texas A&M Univ, Coll Vet Med & Biomed Sci, College Stn, TX 77843 USA.
[Chung, Chungwon] Vet Med Res & Dev, Pullman, WA 99163 USA.
[Ueti, Massaro W.] USDA, Anim Dis Res Unit, Pullman, WA 99164 USA.
RP Bounpheng, MA (reprint author), Texas A&M Vet Med Diagnost Lab, 1 Sippel Rd, College Stn, TX 77843 USA.
EM mbounpheng@gmail.com
FU Zoetis Animal Health
FX The authors would like to acknowledge Dr. Tammy Beckham for her guidance
and support, the Wisconsin Veterinary Diagnostic Laboratory and
Washington Animal Disease Diagnostic Laboratory for providing samples
for validation of the RT-qPCR, and Zoetis Animal Health (formerly Pfizer
Animal Health) for funding serological testing.
NR 39
TC 2
Z9 2
U1 5
U2 15
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0167-5877
EI 1873-1716
J9 PREV VET MED
JI Prev. Vet. Med.
PD APR 1
PY 2015
VL 119
IS 1-2
BP 1
EP 9
DI 10.1016/j.prevetmed.2015.02.006
PG 9
WC Veterinary Sciences
SC Veterinary Sciences
GA CE4IB
UT WOS:000351793200001
PM 25732914
ER
PT J
AU Penalvo, JL
Oliva, B
Sotos-Prieto, M
Uzhova, I
Moreno-Franco, B
Leon-Latre, M
Ordovas, JM
AF Penalvo, Jose L.
Oliva, Belen
Sotos-Prieto, Mercedes
Uzhova, Irina
Moreno-Franco, Belen
Leon-Latre, Montserrat
Maria Ordovas, Jose
TI Greater Adherence to a Mediterranean Dietary Pattern Is Associated With
Improved Plasma Lipid Profile: the Aragon Health Workers Study Cohort
SO REVISTA ESPANOLA DE CARDIOLOGIA
LA English
DT Article
DE Mediterranean diet; Dietary pattern; Factor analysis; Diet score; Plasma
lipids
ID PHYSICAL-ACTIVITY QUESTIONNAIRE; DENSITY-LIPOPROTEIN CHOLESTEROL;
CARDIOVASCULAR-DISEASE RISK; APOLIPOPROTEIN-A-I; FOLLOW-UP; METABOLIC
SYNDROME; HEART-DISEASE; WOMEN; MEN; MORTALITY
AB Introduction and objectives: There is wide recognition of the importance of healthy eating in cardiovascular health promotion. The purpose of this study was to identify the main dietary patterns among a Spanish population, and to determine their relationship with plasma lipid profiles.
Methods: A cross-sectional analysis was conducted of data from 1290 participants of the Aragon Workers Health Study cohort. Standardized protocols were used to collect clinical and biochemistry data. Diet was assessed through a food frequency questionnaire, quantifying habitual intake over the past 12 months. The main dietary patterns were identified by factor analysis. The association between adherence to dietary patterns and plasma lipid levels was assessed by linear and logistic regression.
Results: Two dietary patterns were identified: a Mediterranean dietary pattern, high in vegetables, fruits, fish, white meat, nuts, and olive oil, and a Western dietary pattern, high in red meat, fast food, dairy, and cereals. Compared with the participants in the lowest quintile of adherence to the Western dietary pattern, those in the highest quintile had 4.6 mg/dL lower high-density lipoprotein cholesterol levels (P < .001), 8 mg/dL lower apolipoprotein A1 levels (P = .005) and a greater risk of having decreased high-density lipoprotein cholesterol (odds ratio = 3.19; 95% confidence interval, 1.36-7.5; P-trend = .03). Participants adhering to the Mediterranean dietary pattern had 3.3 mg/dL higher high-density lipoprotein cholesterol levels (P < .001), and a ratio of triglycerides to high-density lipoprotein cholesterol that was 0.43 times lower (P = .043).
Conclusions: Adherence to the Mediterranean dietary pattern is associated with improved lipid profile compared with a Western dietary pattern, which was associated with a lower odds of optimal high-density lipoprotein cholesterol levels in this population. (C) 2014 Sociedad Espanola de Cardiologia. Published by Elsevier Espana, S.L.U. All rights reserved.
C1 [Penalvo, Jose L.; Oliva, Belen; Sotos-Prieto, Mercedes; Uzhova, Irina; Maria Ordovas, Jose] Fdn Ctr Nacl Invest Cardiovasc CNIC, Area Epidemiol & Genet Poblac, Madrid, Spain.
[Sotos-Prieto, Mercedes] Harvard Univ, Sch Publ Hlth, Dept Nutr, Boston, MA 02115 USA.
[Moreno-Franco, Belen; Leon-Latre, Montserrat] Inst Aragones Ciencias Salud I CS, Unidad Prevenc Cardiovasc, Zaragoza, Spain.
[Maria Ordovas, Jose] Tufts Univ, Human Nutr Res Ctr Aging, Jean Mayer US Dept Agr, Nutr & Genom Lab, Boston, MA 02111 USA.
RP Penalvo, JL (reprint author), Ctr Nacl Invest Cardiovasc CNIC, Area Epidemiol & Genet Poblac, Melchor Fernandez Almagro 3, Madrid 28029, Spain.
EM jlpenalvo@cnic.es
FU FIS (Fondo de Investigaciones Sanitarias) of the ISCIII (Instituto de
Salud Carlos III) of Spain [PI11/00403]
FX This study was financially supported by the FIS (Fondo de
Investigaciones Sanitarias) of the ISCIII (Instituto de Salud Carlos
III) of Spain, project PI11/00403.
NR 52
TC 7
Z9 7
U1 7
U2 17
PU EDICIONES DOYMA S A
PI BARCELONA
PA TRAV DE GRACIA 17-21, 08021 BARCELONA, SPAIN
SN 0300-8932
EI 1579-2242
J9 REV ESP CARDIOL
JI Rev. Esp. Cardiol.
PD APR
PY 2015
VL 68
IS 4
BP 290
EP 297
DI 10.1016/j.rec.2014.09.019
PG 8
WC Cardiac & Cardiovascular Systems
SC Cardiovascular System & Cardiology
GA CE5BO
UT WOS:000351845100004
PM 25600180
ER
EF