FN Thomson Reuters Web of Science™
VR 1.0
PT J
AU Guo, SG
Zhang, JG
Sun, HH
Salse, J
Lucas, WJ
Zhang, HY
Zheng, Y
Mao, LY
Ren, Y
Wang, ZW
Min, JM
Guo, XS
Murat, F
Ham, BK
Zhang, ZL
Gao, S
Huang, MY
Xu, YM
Zhong, SL
Bombarely, A
Mueller, LA
Zhao, H
He, HJ
Zhang, Y
Zhang, ZH
Huang, SW
Tan, T
Pang, EL
Lin, K
Hu, Q
Kuang, HH
Ni, PX
Wang, B
Liu, JA
Kou, QH
Hou, WJ
Zou, XH
Jiang, J
Gong, GY
Klee, K
Schoof, H
Huang, Y
Hu, XS
Dong, SS
Liang, DQ
Wang, J
Wu, K
Xia, Y
Zhao, X
Zheng, ZQ
Xing, M
Liang, XM
Huang, BQ
Lv, T
Wang, JY
Yin, Y
Yi, HP
Li, RQ
Wu, MZ
Levi, A
Zhang, XP
Giovannoni, JJ
Wang, J
Li, YF
Fei, ZJ
Xu, Y
AF Guo, Shaogui
Zhang, Jianguo
Sun, Honghe
Salse, Jerome
Lucas, William J.
Zhang, Haiying
Zheng, Yi
Mao, Linyong
Ren, Yi
Wang, Zhiwen
Min, Jiumeng
Guo, Xiaosen
Murat, Florent
Ham, Byung-Kook
Zhang, Zhaoliang
Gao, Shan
Huang, Mingyun
Xu, Yimin
Zhong, Silin
Bombarely, Aureliano
Mueller, Lukas A.
Zhao, Hong
He, Hongju
Zhang, Yan
Zhang, Zhonghua
Huang, Sanwen
Tan, Tao
Pang, Erli
Lin, Kui
Hu, Qun
Kuang, Hanhui
Ni, Peixiang
Wang, Bo
Liu, Jingan
Kou, Qinghe
Hou, Wenju
Zou, Xiaohua
Jiang, Jiao
Gong, Guoyi
Klee, Kathrin
Schoof, Heiko
Huang, Ying
Hu, Xuesong
Dong, Shanshan
Liang, Dequan
Wang, Juan
Wu, Kui
Xia, Yang
Zhao, Xiang
Zheng, Zequn
Xing, Miao
Liang, Xinming
Huang, Bangqing
Lv, Tian
Wang, Junyi
Yin, Ye
Yi, Hongping
Li, Ruiqiang
Wu, Mingzhu
Levi, Amnon
Zhang, Xingping
Giovannoni, James J.
Wang, Jun
Li, Yunfu
Fei, Zhangjun
Xu, Yong
TI The draft genome of watermelon (Citrullus lanatus) and resequencing of
20 diverse accessions
SO NATURE GENETICS
LA English
DT Article
ID MADS-BOX GENE; RNA-SEQ; DNA-SEQUENCES; FRUIT; EVOLUTION; DISTANCE;
TOMATO; PLANT; IDENTIFICATION; EXPRESSION
AB Watermelon, Citrullus lanatus, is an important cucurbit crop grown throughout the world. Here we report a high-quality draft genome sequence of the east Asia watermelon cultivar 97103 (2n = 2x = 22) containing 23,440 predicted protein-coding genes. Comparative genomics analysis provided an evolutionary scenario for the origin of the 11 watermelon chromosomes derived from a 7-chromosome paleohexaploid eudicot ancestor. Resequencing of 20 watermelon accessions representing three different C. lanatus subspecies produced numerous haplotypes and identified the extent of genetic diversity and population structure of watermelon germplasm. Genomic regions that were preferentially selected during domestication were identified. Many disease-resistance genes were also found to be lost during domestication. In addition, integrative genomic and transcriptomic analyses yielded important insights into aspects of phloem-based vascular signaling in common between watermelon and cucumber and identified genes crucial to valuable fruit-quality traits, including sugar accumulation and citrulline metabolism.
C1 [Guo, Shaogui; Sun, Honghe; Zhang, Haiying; Ren, Yi; Zhao, Hong; He, Hongju; Zhang, Yan; Liu, Jingan; Kou, Qinghe; Hou, Wenju; Zou, Xiaohua; Jiang, Jiao; Gong, Guoyi; Xia, Yang; Zhang, Xingping; Li, Yunfu; Xu, Yong] Beijing Acad Agr & Forestry Sci, Natl Engn Res Ctr Vegetables, Key Lab Biol & Genet Improvement Hort Crops N Chi, Beijing, Peoples R China.
[Guo, Shaogui; Sun, Honghe; Zheng, Yi; Mao, Linyong; Gao, Shan; Huang, Mingyun; Xu, Yimin; Zhong, Silin; Bombarely, Aureliano; Mueller, Lukas A.; Giovannoni, James J.; Fei, Zhangjun] Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA.
[Zhang, Jianguo; Wang, Zhiwen; Min, Jiumeng; Guo, Xiaosen; Ni, Peixiang; Wang, Bo; Huang, Ying; Hu, Xuesong; Dong, Shanshan; Liang, Dequan; Wang, Juan; Wu, Kui; Zhao, Xiang; Zheng, Zequn; Xing, Miao; Liang, Xinming; Huang, Bangqing; Lv, Tian; Wang, Junyi; Yin, Ye; Wang, Jun] Beijing Genom Inst Shenzhen, Shenzhen, Peoples R China.
[Zhang, Jianguo; Ni, Peixiang] Fudan Univ, T Life Res, Shanghai 200433, Peoples R China.
[Sun, Honghe] Beijing Agr Univ, Coll Plant Sci & Technol, Beijing 100094, Peoples R China.
[Salse, Jerome; Murat, Florent] INRA, Unites Mixtes Rech 1095, Genet Divers & Ecophysiol Cereals, Clermont Ferrand, France.
[Lucas, William J.; Ham, Byung-Kook; Zhang, Zhaoliang] Univ Calif Davis, Dept Plant Biol, Coll Biol Sci, Davis, CA 95616 USA.
[Zhang, Zhonghua; Huang, Sanwen] Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100193, Peoples R China.
[Tan, Tao; Pang, Erli; Lin, Kui] Beijing Normal Univ, Coll Life Sci, Beijing 100875, Peoples R China.
[Hu, Qun; Kuang, Hanhui] Huazhong Agr Univ, Coll Hort & Forestry, Wuhan, Peoples R China.
[Klee, Kathrin; Schoof, Heiko] Univ Bonn, Inst Nutzpflanzenwissensch & Ressource, Bonn, Germany.
[Yi, Hongping; Wu, Mingzhu] Xinjiang Acad Agr Sci, Urumqi, Peoples R China.
[Li, Ruiqiang] Beijing Novogene Bioinformat Technol Co Ltd, Beijing, Peoples R China.
[Levi, Amnon] ARS, USDA, US Vegetable Lab, Charleston, SC USA.
[Giovannoni, James J.; Fei, Zhangjun] USDA, Robert W Holley Ctr Agr & Hlth, Ithaca, NY USA.
[Wang, Jun] Univ Copenhagen, Dept Biol, Copenhagen, Denmark.
RP Xu, Y (reprint author), Beijing Acad Agr & Forestry Sci, Natl Engn Res Ctr Vegetables, Key Lab Biol & Genet Improvement Hort Crops N Chi, Beijing, Peoples R China.
EM wangj@genomics.org.cn; liyunfu@baafs.net.cn; zf25@cornell.edu;
xuyong@nercv.org
RI zhong, silin/O-7029-2015; Lin, Kui/P-4492-2015; Wang, Jun/C-8434-2016;
Bombarely, Aureliano/C-6580-2009; Zheng, Yi/F-6150-2016; Wang,
Jun/B-9503-2016
OI zhong, silin/0000-0002-0198-7383; Lin, Kui/0000-0002-5993-1972; Fei,
Zhangjun/0000-0001-9684-1450; Wang, Jun/0000-0002-8540-8931; Bombarely,
Aureliano/0000-0001-6257-8914; Zheng, Yi/0000-0002-8042-7770; Huang,
Sanwen/0000-0002-8547-5309; Wang, Jun/0000-0002-2113-5874
FU Ministry of Science and Technology of the People's Republic of China
[2010DFB33740, 2012AA020103, 2012AA100101, 2012AA100103, 2012AA100105];
Ministry of Agriculture of the People's Republic of China [CARS-26];
Major Program of Beijing Natural Science Foundation of China [5100001];
Beijing Municipal Science and Technology Commission of China
[D111100001311002]; National Natural Science Foundation of China
[30972015, 31171980, 31272184]; Agence Nationale de la Recherche
[ANR-09-JCJC-0058-01]; USDA National Institute of Food and Agriculture
[NIFA 201015479]; US National Science Foundation [IOS-0923312,
IOS-1025642]; US-Israel Binational Agricultural Research and Development
Fund [IS-4223-09C]; USDA Agricultural Research Service
FX We are grateful to E. Legg of Syngenta and J. de Wit and Z. Sun of Rijk
Zwaan for management support of this project. This research was
supported by grants from the Ministry of Science and Technology of the
People's Republic of China (2010DFB33740, 2012AA020103, 2012AA100101,
2012AA100103 and 2012AA100105), the Ministry of Agriculture of the
People's Republic of China (CARS-26), the Major Program of Beijing
Natural Science Foundation of China (5100001), the Beijing Municipal
Science and Technology Commission of China (D111100001311002) to Yong
Xu, the National Natural Science Foundation of China (30972015 and
31171980) to H. Zhang, the National Natural Science Foundation of China
(31272184) to S. Guo, the Agence Nationale de la Recherche (Program
ANRjc-PaleoCereal, ANR-09-JCJC-0058-01) to J. S., the USDA National
Institute of Food and Agriculture (NIFA 201015479) to W. J. L., the US
National Science Foundation (IOS-0923312 and IOS-1025642) and US-Israel
Binational Agricultural Research and Development Fund (IS-4223-09C) to
Z.F. and the USDA Agricultural Research Service.
NR 77
TC 152
Z9 180
U1 21
U2 225
PU NATURE PUBLISHING GROUP
PI NEW YORK
PA 75 VARICK ST, 9TH FLR, NEW YORK, NY 10013-1917 USA
SN 1061-4036
EI 1546-1718
J9 NAT GENET
JI Nature Genet.
PD JAN
PY 2013
VL 45
IS 1
BP 51
EP +
DI 10.1038/ng.2470
PG 10
WC Genetics & Heredity
SC Genetics & Heredity
GA 061HJ
UT WOS:000312838800012
PM 23179023
ER
PT J
AU Santin, M
AF Santin, M.
TI Clinical and subclinical infections with Cryptosporidium in animals
SO NEW ZEALAND VETERINARY JOURNAL
LA English
DT Review
DE Clinical signs; Cryptosporidium; livestock; pets; poultry; subclinical
infection
ID PATHOGEN-FREE CHICKENS; MAREKS-DISEASE VIRUS; N. SP APICOMPLEXA;
ZARAGOZA NORTHEASTERN SPAIN; POTENTIAL RISK-FACTORS; NEONATAL DAIRY
CALVES; FELINE LEUKEMIA-VIRUS; CATTLE BOS-TAURUS; POST-WEANED PIGS;
MOLECULAR CHARACTERIZATION
AB Cryptosporidium spp. are frequent parasites of livestock and companion animals, raising questions about the clinical significance of such infections. Cryptosporidium infections have a wide spectrum of clinical signs that can vary from asymptomatic to serious infection to death. In neonatal ruminants, cryptosporidiosis is considered an important disease characterised by diarrhoea and mortality. In companion animals most infections are asymptomatic but severe clinical illness has also been reported in dogs, cats and horses. In birds, three main clinical forms of cryptosporidiosis are primarily seen in naturally occurring infections, i.e. respiratory, intestinal, and renal. In reptiles, cryptosporidiosis is an emerging problem given that infections are frequently chronic and lethal. Molecular tools have been developed to detect and differentiate Cryptosporidium at the species/genotype and subtype levels. The use of those tools has led to a more in-depth understanding of the genetic diversity of Cryptosporidium which plays an important role in the diverse clinical presentations of cryptosporidiosis. This review presents an overview of the current knowledge on clinical cryptosporidiosis in livestock, pets, and other animals.
C1 ARS, Environm Microbial & Food Safety Lab, USDA, Beltsville, MD 20705 USA.
RP Santin, M (reprint author), ARS, Environm Microbial & Food Safety Lab, USDA, 10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM monica.santin-duran@ars.usda.gov
NR 191
TC 27
Z9 30
U1 4
U2 61
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0048-0169
J9 NEW ZEAL VET J
JI N. Z. Vet. J.
PD JAN 1
PY 2013
VL 61
IS 1
BP 1
EP 10
DI 10.1080/00480169.2012.731681
PG 10
WC Veterinary Sciences
SC Veterinary Sciences
GA 052HH
UT WOS:000312187900001
PM 23134088
ER
PT J
AU Wang, Y
You, FM
Lazo, GR
Luo, MC
Thilmony, R
Gordon, S
Kianian, SF
Gu, YQ
AF Wang, Yi
You, Frank M.
Lazo, Gerard R.
Luo, Ming-Cheng
Thilmony, Roger
Gordon, Sean
Kianian, Shahryar F.
Gu, Yong Q.
TI PIECE: a database for plant gene structure comparison and evolution
SO NUCLEIC ACIDS RESEARCH
LA English
DT Article
ID MULTIPLE SEQUENCE ALIGNMENT; PROTEIN FAMILIES; INTRON EVOLUTION;
GENOMICS; GAIN; CONSERVATION; EUKARYOTES; RESOURCE; DNA
AB Gene families often show degrees of differences in terms of exon-intron structures depending on their distinct evolutionary histories. Comparative analysis of gene structures is important for understanding their evolutionary and functional relationships within plant species. Here, we present a comparative genomics database named PIECE (http://wheat.pw.usda.gov/piece) for Plant Intron and Exon Comparison and Evolution studies. The database contains all the annotated genes extracted from 25 sequenced plant genomes. These genes were classified based on Pfam motifs. Phylogenetic trees were pre-constructed for each gene category. PIECE provides a user-friendly interface for different types of searches and a graphical viewer for displaying a gene structure pattern diagram linked to the resulting bootstrapped dendrogram for each gene family. The gene structure evolution of orthologous gene groups was determined using the GLOOME, Exalign and GECA software programs that can be accessed within the database. PIECE also provides a web server version of the software, GSDraw, for drawing schematic diagrams of gene structures. PIECE is a powerful tool for comparing gene sequences and provides valuable insights into the evolution of gene structure in plant genomes.
C1 [Wang, Yi; Lazo, Gerard R.; Thilmony, Roger; Gordon, Sean; Gu, Yong Q.] ARS, USDA, Western Reg Res Ctr, Albany, CA 94710 USA.
[Wang, Yi; Luo, Ming-Cheng] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[You, Frank M.] Agr & Agri Food Canada, Cereal Res Ctr, Winnipeg, MB R3T 2M9, Canada.
[Kianian, Shahryar F.] N Dakota State Univ, Dept Plant Sci, Fargo, ND 58105 USA.
RP Gu, YQ (reprint author), ARS, USDA, Western Reg Res Ctr, Albany, CA 94710 USA.
EM Yong.Gu@ars.usda.gov
RI Lazo, Gerard/A-8900-2009
OI Lazo, Gerard/0000-0002-9160-2052
FU U.S. National Science Foundation [IOS 0701916, IOS 0822100]; United
State Department of Agriculture, Agriculture Research Service CRIS
project [5325-21000-014]; US Department of Agriculture, Agriculture
Research Service
FX U.S. National Science Foundation [IOS 0701916 and IOS 0822100]; United
State Department of Agriculture, Agriculture Research Service CRIS
project [5325-21000-014]. Funding for open access charge: US Department
of Agriculture, Agriculture Research Service.
NR 28
TC 19
Z9 19
U1 0
U2 14
PU OXFORD UNIV PRESS
PI OXFORD
PA GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
SN 0305-1048
J9 NUCLEIC ACIDS RES
JI Nucleic Acids Res.
PD JAN
PY 2013
VL 41
IS D1
BP D1159
EP D1166
DI 10.1093/nar/gks1109
PG 8
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 062BE
UT WOS:000312893300164
PM 23180792
ER
PT J
AU Leffler, AJ
James, JJ
Monaco, TA
AF Leffler, A. Joshua
James, Jeremy J.
Monaco, Thomas A.
TI Temperature and functional traits influence differences in nitrogen
uptake capacity between native and invasive grasses
SO OECOLOGIA
LA English
DT Article
DE Cheatgrass; Exotic species; Medusahead; Specific absorption rate
ID TAENIATHERUM-CAPUT-MEDUSAE; POTENTIAL GROWTH-RATE; SAGEBRUSH ECOSYSTEMS;
BROMUS-TECTORUM; CLIMATE-CHANGE; GLOBAL CHANGE; ROOT TRAITS; PLANT;
LEAF; PLASTICITY
AB Performance differences between native and exotic invasive plants are often considered static, but invasive grasses may achieve growth advantages in western North America shrublands and steppe under only optimal growing conditions. We examine differences in N uptake and several morphological variables that influence uptake at temperatures between 5 and 25 A degrees C. We contrast two native perennial grasses in western North America: Elymus elymoides and Pseudoroegneria spicata; two invasive annual grasses: Bromus tectorum and Taeniatherum caput-medusae; and one highly selected non-native perennial grass: Agropyron cristatum. The influence of temperature on N uptake is poorly characterized, yet these invasive annual grasses are known to germinate in warm soils in the autumn, and both experience cool soils during the short growing season following snowmelt in the spring. To further explore the influence of temperature on the correlation between morphological variables and N uptake, our data are applied to a previously published path model and one proposed here. Differences in N uptake between native and invasive grasses were small at the lowest temperature, but were large at the highest temperature. At lower temperatures, uptake of N by annuals and perennials was correlated with leaf N and mass. At higher temperatures, uptake by annuals was correlated only with these leaf traits, but uptake by perennials was correlated with these leaf traits as well as root N and mass. Consequently, our results imply that annual grasses face fewer morphological constraints on N uptake than perennial grasses, and annual grasses may gain further advantage in warmer temperature conditions or during more frequent warm periods.
C1 [Leffler, A. Joshua; Monaco, Thomas A.] Utah State Univ, USDA ARS, Forage & Range Res Lab, Logan, UT 84322 USA.
[James, Jeremy J.] USDA ARS, Eastern Oregon Agr Res Ctr, Burns, OR 97720 USA.
RP Leffler, AJ (reprint author), Univ Alaska Anchorage, Environm & Nat Resources Inst, 3151 Alumni Loop, Anchorage, AK 99508 USA.
EM jleffler@cc.usu.edu
NR 61
TC 12
Z9 13
U1 6
U2 138
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0029-8549
J9 OECOLOGIA
JI Oecologia
PD JAN
PY 2013
VL 171
IS 1
BP 51
EP 60
DI 10.1007/s00442-012-2399-4
PG 10
WC Ecology
SC Environmental Sciences & Ecology
GA 064MI
UT WOS:000313079100005
PM 22744743
ER
PT J
AU Comerford, DP
Schaberg, PG
Templer, PH
Socci, AM
Campbell, JL
Wallin, KF
AF Comerford, Daniel P.
Schaberg, Paul G.
Templer, Pamela H.
Socci, Anne M.
Campbell, John L.
Wallin, Kimberly F.
TI Influence of experimental snow removal on root and canopy physiology of
sugar maple trees in a northern hardwood forest
SO OECOLOGIA
LA English
DT Article
DE Soil freezing; Root injury; Woody shoot growth; Carbohydrate and cation
concentrations; Acer saccharum
ID BROOK-EXPERIMENTAL-FOREST; NORTHEASTERN UNITED-STATES; HUBBARD-BROOK;
CALCIUM ADDITION; COLD TOLERANCE; TEMPERATURE TOLERANCE; RED SPRUCE;
SOIL; ECOSYSTEM; FROST
AB Due to projected increases in winter air temperatures in the northeastern USA over the next 100 years, the snowpack is expected to decrease in depth and duration, thereby increasing soil exposure to freezing air temperatures. To evaluate the potential physiological responses of sugar maple (Acer saccharum Marsh.) to a reduced snowpack, we measured root injury, foliar cation and carbohydrate concentrations, woody shoot carbohydrate levels, and terminal woody shoot lengths of trees in a snow manipulation experiment in New Hampshire, USA. Snow was removed from treatment plots for the first 6 weeks of winter for two consecutive years, resulting in lower soil temperatures to a depth of 50 cm for both winters compared to reference plots with an undisturbed snowpack. Visibly uninjured roots from trees in the snow removal plots had significantly higher (but sub-lethal) levels of relative electrolyte leakage than trees in the reference plots. Foliar calcium: aluminum (Al) molar ratios were significantly lower, and Al concentrations were significantly higher, in trees from snow removal plots than trees from reference plots. Snow removal also reduced terminal shoot growth and increased foliar starch concentrations. Our results are consistent with previous research implicating soil freezing as a cause of soil acidification that leads to soil cation imbalances, but are the first to show that this translates into altered foliar cation pools, and changes in soluble and structural carbon pools in trees. Increased soil freezing due to a reduced snowpack could exacerbate soil cation imbalances already caused by acidic deposition, and have widespread implications for forest health in the northeastern USA.
C1 [Comerford, Daniel P.; Wallin, Kimberly F.] Univ Vermont, Rubenstein Sch Environm & Nat Resources, Burlington, VT 05405 USA.
[Schaberg, Paul G.; Wallin, Kimberly F.] Forest Serv, No Res Stn, USDA, S Burlington, VT 05403 USA.
[Templer, Pamela H.; Socci, Anne M.] Boston Univ, Dept Biol, Boston, MA 02215 USA.
[Campbell, John L.] US Forest Serv, No Res Stn, USDA, Durham, NH 03824 USA.
RP Schaberg, PG (reprint author), Forest Serv, No Res Stn, USDA, 705 Spear St, S Burlington, VT 05403 USA.
EM pschaberg@fs.fed.us
OI Campbell, John/0000-0003-4956-1696
FU Forest Service Northern Research Station; USDA CSREES McIntire-Stennis
Forest Research Program; Andrew W. Mellon foundation; National Science
Foundation
FX The authors are grateful to Justin Brigham, C. J. Freeman, Meghan Gagne,
Josh Halman, Chris Hansen, Glenn Harrington, Gary Hawley, Alexandra
Kosiba, Chenin Limback, Paula Murakami, Erik Niebylski, Dan Ott, Sarah
Pears, Matthew Ross, Bethel Steele, Phil Thompson, Alexandra Webster,
Megan Yanney, Will Young, and Helen Yurchenco for their assistance in
both the field and laboratory. We thank Alan Howard for assistance with
statistical analyses and Drs. Abby van den Berg, David V. D'Amore,
Brynne E. Lazarus and Kevin T. Smith for providing helpful feedback on
an earlier version of this manuscript. We further thank the staff at the
Hubbard Brook Experimental Forest for their generous help in all aspects
of our sample collections. This research was supported by funds provided
by the Forest Service Northern Research Station, the USDA CSREES
McIntire-Stennis Forest Research Program, and the Andrew W. Mellon
foundation. This manuscript is a contribution of the Hubbard Brook
Ecosystem Study. Hubbard Brook is part of the Long-Term Ecological
Research (LTER) network, which is supported by the National Science
Foundation. The Hubbard Brook Experimental Forest is operated and
maintained by the USDA Forest Service, Northern Research Station,
Newtown Square, PA.
NR 53
TC 27
Z9 28
U1 6
U2 85
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0029-8549
EI 1432-1939
J9 OECOLOGIA
JI Oecologia
PD JAN
PY 2013
VL 171
IS 1
BP 261
EP 269
DI 10.1007/s00442-012-2393-x
PG 9
WC Ecology
SC Environmental Sciences & Ecology
GA 064MI
UT WOS:000313079100024
PM 22752211
ER
PT J
AU Spencer, DF
Liow, PS
Lembi, CA
AF Spencer, David F.
Liow, Pui-Sze
Lembi, Carole A.
TI Influence of a non-copper algicide on the cyanobacterium, Nostoc
spongiaeforme, and the green alga, Hydrodictyon reticulatum, in field
and laboratory experiments
SO PADDY AND WATER ENVIRONMENT
LA English
DT Article
DE Algae management; Algicide; Rice straw; Microbial degradation; Hydrothol
191
ID CALIFORNIA RICE FIELDS; TEMPERATURE; GROWTH
AB Cyanobacteria and algae grow in California rice fields where they form large mats that may smother seedlings or cause them to dislodge, resulting in reduced rice stand establishment and potential yield loss. The most troublesome species of cyanobacteria is Nostoc spongiaeforme. It is very difficult to control using currently accepted methods, i.e., aerial applications of copper sulfate. A non-copper algicide, the mono (N,N-dimethylalkylamine) salt of endothall has been suggested as an alternative method for controlling nuisance cyanobacterial and algal growths in California rice fields. The purpose of the experiments described here was to evaluate the effect of the mono (N,N-dimethylalkylamine) salt of endothall on growth of N. spongiaeforme and the green alga, Hydrodictyon reticulatum. In laboratory experiments, the mono (N,N-dimethylalkylamine) salt of endothall reduced N. spongiaeforme growth at 0.3 mg L-1. This effect was removed when rice straw was added to the growth medium, indicating that the rice straw may have introduced bacteria capable of degrading the mono (N,N-dimethylalkylamine) salt of endothall. In outdoor experiments, which used rice field water containing decomposing rice straw, the mono (N,N-dimethylalkylamine) salt of endothall concentrations between 0 and 5 mg L-1 had little effect on N. spongiaeforme. In contrast, H. reticulatum exhibited injury symptoms at 1 mg L-1 or greater. However, H. reticulatum recovered by the end of the 7-day exposure. It is not clear how this algicide will be useful in the management of N. spongiaeforme or H. reticulatum in California rice fields.
C1 [Spencer, David F.; Liow, Pui-Sze] Univ Calif Davis, USDA, ARS, Exot & Invas Weeds Res Unit,Dept Plant Sci, Davis, CA 95616 USA.
[Lembi, Carole A.] Purdue Univ, Dept Bot & Plant Pathol, W Lafayette, IN 47907 USA.
RP Spencer, DF (reprint author), Univ Calif Davis, USDA, ARS, Exot & Invas Weeds Res Unit,Dept Plant Sci, Mail Stop 4,1 Shields Ave, Davis, CA 95616 USA.
EM david.spencer@ars.usda.gov
NR 15
TC 3
Z9 3
U1 3
U2 24
PU SPRINGER HEIDELBERG
PI HEIDELBERG
PA TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY
SN 1611-2490
J9 PADDY WATER ENVIRON
JI Paddy Water Environ.
PD JAN
PY 2013
VL 11
IS 1-4
BP 611
EP 617
DI 10.1007/s10333-012-0343-1
PG 7
WC Agricultural Engineering; Agronomy
SC Agriculture
GA 061XM
UT WOS:000312883500055
ER
PT J
AU Hoffman, MT
Doud, MS
Williams, L
Zhang, MQ
Ding, F
Stover, E
Hall, D
Zhang, SA
Jones, L
Gooch, M
Fleites, L
Dixon, W
Gabriel, D
Duan, YP
AF Hoffman, Michele T.
Doud, Melissa S.
Williams, Lisa
Zhang, Mu-Qing
Ding, Fang
Stover, Ed
Hall, David
Zhang, Shouan
Jones, Lisa
Gooch, Mark
Fleites, Laura
Dixon, Wayne
Gabriel, Dean
Duan, Yong-Ping
TI Heat Treatment Eliminates 'Candidatus Liberibacter asiaticus' from
Infected Citrus Trees Under Controlled Conditions
SO PHYTOPATHOLOGY
LA English
DT Article
ID BACTERIOPHAGE-LAMBDA DEVELOPMENT; REAL-TIME PCR; GREENING DISEASE; VIRUS
DISEASES; PLANTS; SWITCHES; PROPHAGE; TEMPERATURE; AMERICANUS; INDUCTION
AB Hoffman, M. T., Doud, M. S., Williams, L., Zhang, M.-Q., Ding, F., Stover, E., Hall, D., Zhang, S., Jones, L., Gooch, M., Fleites, L., Dixon, W., Gabriel, D., and Duan, Y.-P. 2013. Heat treatment eliminates 'Candidatus Liberibacter asiaticus' from infected citrus trees under controlled conditions. Phytopathology 13:15-22. Huanglongbing (HLB) is one of the most destructive diseases of citrus worldwide. The three known causal agents of HLB are species of alpha-proteobacteria: 'Candidatus Liberibacter asiaticus', 'Ca. L. africanus', and 'Ca. L. americanus'. Previous studies have found distinct variations in temperature sensitivity and tolerance among these species. Here, we describe the use of controlled heat treatments to cure HLB caused by 'Ca. L. asiaticus', the most prevalent and heat-tolerant species. Using temperature-controlled growth chambers, we evaluated the time duration and temperature required to suppress or eliminate the 'Ca. L. asiaticus' bacterium in citrus, using various temperature treatments for time periods ranging from 2 days to 4 months. Results of quantitative polymerase chain reaction (qPCR) after treatment illustrate significant decreases in the 'Ca. L. asiaticus' bacterial titer, combined with healthy vigorous growth by all surviving trees. Repeated qPCR testing confirmed that previously infected, heat-treated plants showed no detectable levels of 'Ca. L. asiaticus', while untreated control plants remained highly infected. Continuous thermal exposure to 40 to 42 degrees C for a minimum of 48 h was sufficient to significantly reduce titer or eliminate 'Ca. L. asiaticus' bacteria entirely in HLB-affected citrus seedlings. This method may be useful for the control of 'Ca. Liberibacter'-infected plants in nursery and greenhouse settings.
C1 [Hoffman, Michele T.; Doud, Melissa S.; Stover, Ed; Hall, David; Duan, Yong-Ping] ARS, USDA, United States Hort Res Lab, Ft Pierce, FL 34945 USA.
[Williams, Lisa; Jones, Lisa; Dixon, Wayne] Florida Dept Agr & Consumer Serv, Div Plant Ind, Gainesville, FL 32614 USA.
[Zhang, Mu-Qing] Univ Florida, Inst Food & Agr Sci, Indian River Res & Educ Ctr, Ft Pierce, FL 34945 USA.
[Ding, Fang; Zhang, Shouan] Univ Florida, Inst Food & Agr Sci, Trop Res & Educ Ctr, Homestead, FL 33031 USA.
[Fleites, Laura; Gabriel, Dean] Univ Florida, Dept Plant Pathol, Gainesville, FL 32614 USA.
RP Duan, YP (reprint author), ARS, USDA, United States Hort Res Lab, Ft Pierce, FL 34945 USA.
EM yongping.duan@ars.usda.gov
FU Specialty Crop Block Grant; FDACS; Citrus Research and Development
Foundation, Inc.
FX This work was supported by grants from the Specialty Crop Block Grant,
FDACS and the Citrus Research and Development Foundation, Inc. to Y.-P.
Duan and D. W. Gabriel. We thank C. Latza, P. Rayside, G. Brock, and J.
Smith for excellent technical assistance; and R. Shatter and A. Voss for
providing infected citrus.
NR 31
TC 24
Z9 29
U1 5
U2 57
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
J9 PHYTOPATHOLOGY
JI Phytopathology
PD JAN
PY 2013
VL 103
IS 1
BP 15
EP 22
DI 10.1094/PHYTO-06-12-0138-R
PG 8
WC Plant Sciences
SC Plant Sciences
GA 060CL
UT WOS:000312754000001
PM 23035631
ER
PT J
AU Chen, W
Djama, ZR
Coffey, MD
Martin, FN
Bilodeau, GJ
Radmer, L
Denton, G
Levesque, CA
AF Chen, Wen
Djama, Zeinab Robleh
Coffey, Michael D.
Martin, Frank N.
Bilodeau, Guillaume J.
Radmer, Lorien
Denton, Geoff
Levesque, C. Andre
TI Membrane-Based Oligonucleotide Array Developed from Multiple Markers for
the Detection of Many Phytophthora Species
SO PHYTOPATHOLOGY
LA English
DT Article
DE DNA hybridization
ID POTATO FAMINE PATHOGEN; CYTOCHROME-OXIDASE-II; SUDDEN OAK DEATH;
REAL-TIME PCR; PHYLOGENETIC-RELATIONSHIPS; MOLECULAR-DETECTION; GENUS
PHYTOPHTHORA; SEQUENCE-ANALYSIS; CONTAINER MIXES; PLANT-PATHOGENS
AB Chen, W., Robleh Djama, Z., Coffey, M. D., Martin, E N., Bilodeau, G. J., Radmer, L., Denton, G., and Levesque, C. A. 2013. Membrane-based oligonucleotide array developed from multiple markers for the detection of many Phytophthora species. Phytopathology 103:43-54. Most Phytophthora spp. are destructive plant pathogens; therefore, effective monitoring and accurate early detection are important means of preventing potential epidemics and outbreaks of diseases. In the current study, a membrane-based oligonucleotide array was developed that can detect Phytophthora spp. reliably using three DNA regions; namely, the internal transcribed spacer (ITS), the 5' end of cytochrome c oxidase 1 gene (cox1), and the intergenic region between cytochrome c oxidase 2 gene (cox2) and cox1 (cox2-1 spacer). Each sequence data set contained approximate to 250 sequences representing 98 described and 15 undescribed species of Phytophthora. The array was validated with 143 pure cultures and 35 field samples. Together, nonrejected oligonucleotides from all three markers have the ability to reliably detect 82 described and 8 undescribed Phytophthora spp., including several quarantine or regulated pathogens such as Phytophthora ramorum. Our results showed that a DNA array containing signature oligonucleotides designed from multiple genomic regions provided robustness and redundancy for the detection and differentiation of closely related taxon groups. This array has the potential to be used as a routine diagnostic tool for Phytophthora spp. from complex environmental samples without the need for extensive growth of cultures.
C1 [Chen, Wen; Djama, Zeinab Robleh; Levesque, C. Andre] Agr & Agri Food Canada, Cent Expt Farm, Ottawa, ON K1A 0C6, Canada.
[Coffey, Michael D.] Univ Calif Riverside, Dept Plant Pathol & Microbiol, Riverside, CA 92521 USA.
[Martin, Frank N.; Bilodeau, Guillaume J.; Radmer, Lorien] ARS, USDA, Salinas, CA 93905 USA.
[Denton, Geoff] Royal Hort Soc, Woking GU23 6QB, Surrey, England.
RP Levesque, CA (reprint author), Agr & Agri Food Canada, Cent Expt Farm, Ottawa, ON K1A 0C6, Canada.
EM Andre.Levesque@agr.gc.ca
FU Genome Canada (through the Ontario Genomics Institute); NSERC; USDA
Agriculture and Food Research Initiative Plan Biosecurity Competitive
[2007-55605-17835]
FX This research was supported through funding to the Canadian Barcode of
Life Network from Genome Canada (through the Ontario Genomics
Institute), NSERC, and other sponsors listed at www.BOLNET.ca. The World
Oomycete Genetic Resource Collection (formerly World Phytophthora
Genetic Resource Collection) at University of California-Riverside
provided all the total DNA samples used in this study. The DNA
sequencing completed by M. Coffey and F. Martin was supported by the
USDA Agriculture and Food Research Initiative Plan Biosecurity
Competitive Grant number 2007-55605-17835. We thank J. Chapados, T.
Barasubiye, C. Lewis, and R. Assabgui at Agriculture and Agri-Food
Canada for their valuable technical support; K. Katoh for advice on
MAFFT script alteration; E. Sarhan, C. M. Rodriguez, and A. Brar for
assistance with the Phytophthora collection and sequencing at the
University of California-Riverside; J. Denton, B. Henricot, and I.
Waghorn for help with the validation samples from the United Kingdom;
and T. Rintoul for her help with the editing of the manuscript.
NR 75
TC 9
Z9 11
U1 1
U2 26
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0031-949X
J9 PHYTOPATHOLOGY
JI Phytopathology
PD JAN
PY 2013
VL 103
IS 1
BP 43
EP 54
DI 10.1094/PHYTO-04-12-0092-R
PG 12
WC Plant Sciences
SC Plant Sciences
GA 060CL
UT WOS:000312754000004
PM 23050746
ER
PT J
AU Rajangam, AS
Gidda, SK
Craddock, C
Mullen, RT
Dyer, JM
Eastmond, PJ
AF Rajangam, Alex S.
Gidda, Satinder K.
Craddock, Christian
Mullen, Robert T.
Dyer, John M.
Eastmond, Peter J.
TI Molecular Characterization of the Fatty Alcohol Oxidation Pathway for
Wax-Ester Mobilization in Germinated Jojoba Seeds
SO PLANT PHYSIOLOGY
LA English
DT Article
ID SJOGREN-LARSSON-SYNDROME; ALDEHYDE-DEHYDROGENASE GENES;
ARABIDOPSIS-THALIANA; ENDOPLASMIC-RETICULUM; MEMBRANE-PROTEINS;
GOLGI-APPARATUS; PLANTS; CLONING; OIL; BIOSYNTHESIS
AB Jojoba (Simmondsia chinensis) is the only plant species known to use liquid wax esters (WEs) as a primary seed storage reserve. Upon germination, WE hydrolysis releases very-long-chain fatty alcohols, which must be oxidized to fatty acids by the sequential action of a fatty alcohol oxidase (FAO) and a fatty aldehyde dehydrogenase (FADH) before they can be beta-oxidized. Here, we describe the cloning and characterization of genes for each of these two activities. Jojoba FAO and FADH are 52% and 68% identical to Arabidopsis (Arabidopsis thaliana) FAO3 and ALDH3H1, respectively. The genes are expressed most strongly in the cotyledons of jojoba seedlings following germination, but transcripts can also be detected in vegetative tissues. Proteomic analysis indicated that the FAO and FADH proteins can be detected on wax bodies, but they localized to the endoplasmic reticulum when they were expressed as amino-terminal green fluorescent protein fusions in tobacco (Nicotiana tabacum) leaves. Recombinant jojoba FAO and FADH proteins are active on very-long-chain fatty alcohol and fatty aldehyde substrates, respectively, and have biochemical properties consistent with those previously reported in jojoba cotyledons. Coexpression of jojoba FAO and FADH in Arabidopsis enhanced the in vivo rate of fatty alcohol oxidation more than 4-fold. Taken together, our data suggest that jojoba FAO and FADH constitute the very-long-chain fatty alcohol oxidation pathway that is likely to be necessary for efficient WE mobilization following seed germination.
C1 [Eastmond, Peter J.] Rothamsted Res, Dept Crop Biol & Plant Sci, Harpenden AL5 2JQ, Herts, England.
[Rajangam, Alex S.; Craddock, Christian] Univ Warwick, Sch Life Sci, Coventry CV4 7AL, Warwick, England.
[Gidda, Satinder K.; Mullen, Robert T.] Univ Guelph, Dept Mol & Cellular Biol, Guelph, ON N1G 2W1, Canada.
[Dyer, John M.] USDA ARS, US Arid Land Agr Res Ctr, Maricopa, AZ 85238 USA.
RP Eastmond, PJ (reprint author), Rothamsted Res, Dept Crop Biol & Plant Sci, Harpenden AL5 2JQ, Herts, England.
EM peter.eastmond@rothamsted.ac.uk
OI Eastmond, Peter/0000-0003-4526-5136
FU European Union Framework Programme 7 (Industrial Crops Producing Added
Value Oils for Novel Chemicals project); Natural Sciences and
Engineering Research Council of Canada
FX This work was supported by the European Union Framework Programme 7
(Industrial Crops Producing Added Value Oils for Novel Chemicals
project) and the Natural Sciences and Engineering Research Council of
Canada.
NR 49
TC 11
Z9 13
U1 2
U2 33
PU AMER SOC PLANT BIOLOGISTS
PI ROCKVILLE
PA 15501 MONONA DRIVE, ROCKVILLE, MD 20855 USA
SN 0032-0889
EI 1532-2548
J9 PLANT PHYSIOL
JI Plant Physiol.
PD JAN
PY 2013
VL 161
IS 1
BP 72
EP 80
DI 10.1104/pp.112.208264
PG 9
WC Plant Sciences
SC Plant Sciences
GA 062ZP
UT WOS:000312964000008
PM 23166353
ER
PT J
AU Akhunov, ED
Sehgal, S
Liang, HQ
Wang, SC
Akhunova, AR
Kaur, G
Li, WL
Forrest, KL
See, D
Simkova, H
Ma, YQ
Hayden, MJ
Luo, MC
Faris, JD
Dolezel, J
Gill, BS
AF Akhunov, Eduard D.
Sehgal, Sunish
Liang, Hanquan
Wang, Shichen
Akhunova, Alina R.
Kaur, Gaganpreet
Li, Wanlong
Forrest, Kerrie L.
See, Deven
Simkova, Hana
Ma, Yaqin
Hayden, Matthew J.
Luo, Mingcheng
Faris, Justin D.
Dolezel, Jaroslav
Gill, Bikram S.
TI Comparative Analysis of Syntenic Genes in Grass Genomes Reveals
Accelerated Rates of Gene Structure and Coding Sequence Evolution in
Polyploid Wheat
SO PLANT PHYSIOLOGY
LA English
DT Article
ID MESSENGER-RNA DECAY; HEXAPLOID WHEAT; NUCLEOTIDE SUBSTITUTION;
BRACHYPODIUM-DISTACHYON; PHYLOGENETIC ANALYSIS; DUPLICATE GENES; PLANT
GENOMES; ORYZA-SATIVA; BREAD WHEAT; EXPRESSION
AB Cycles of whole-genome duplication (WGD) and diploidization are hallmarks of eukaryotic genome evolution and speciation. Polyploid wheat (Triticum aestivum) has had a massive increase in genome size largely due to recent WGDs. How these processes may impact the dynamics of gene evolution was studied by comparing the patterns of gene structure changes, alternative splicing (AS), and codon substitution rates among wheat and model grass genomes. In orthologous gene sets, significantly more acquired and lost exonic sequences were detected in wheat than in model grasses. In wheat, 35% of these gene structure rearrangements resulted in frame-shift mutations and premature termination codons. An increased codon mutation rate in the wheat lineage compared with Brachypodium distachyon was found for 17% of orthologs. The discovery of premature termination codons in 38% of expressed genes was consistent with ongoing pseudogenization of the wheat genome. The rates of AS within the individual wheat subgenomes (21%-25%) were similar to diploid plants. However, we uncovered a high level of AS pattern divergence between the duplicated homeologous copies of genes. Our results are consistent with the accelerated accumulation of AS isoforms, nonsynonymous mutations, and gene structure rearrangements in the wheat lineage, likely due to genetic redundancy created by WGDs. Whereas these processes mostly contribute to the degeneration of a duplicated genome and its diploidization, they have the potential to facilitate the origin of new functional variations, which, upon selection in the evolutionary lineage, may play an important role in the origin of novel traits.
C1 [Akhunov, Eduard D.; Sehgal, Sunish; Liang, Hanquan; Wang, Shichen; Akhunova, Alina R.; Kaur, Gaganpreet; Gill, Bikram S.] Kansas State Univ, Dept Plant Pathol, Manhattan, KS 66506 USA.
[Liang, Hanquan; Akhunova, Alina R.] Kansas State Univ, Integrated Genom Facil, Manhattan, KS 66506 USA.
[Li, Wanlong] S Dakota State Univ, Brookings, SD 57007 USA.
[Forrest, Kerrie L.; Hayden, Matthew J.] Victorian AgriBiosci Ctr, Dept Primary Ind Victoria, Bundoora, Vic 3083, Australia.
[See, Deven] Washington State Univ, USDA ARS, Western Reg Small Grains Genotyping Lab, Pullman, WA 99164 USA.
[Simkova, Hana; Dolezel, Jaroslav] Inst Expt Bot, Ctr Reg Hana Biotechnol & Agr Res, CZ-77200 Olomouc, Czech Republic.
[Ma, Yaqin; Luo, Mingcheng] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[Ma, Yaqin] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA.
[Faris, Justin D.] USDA ARS, No Crop Sci Lab, Fargo, ND 58102 USA.
[Gill, Bikram S.] King Abdulaziz Univ, Fac Sci, Genom & Biotechnol Sect, Dept Biol Sci, Jeddah 21589, Saudi Arabia.
RP Akhunov, ED (reprint author), Kansas State Univ, Dept Plant Pathol, Throckmorton Hall, Manhattan, KS 66506 USA.
EM eakhunov@ksu.edu
RI Simkova, Hana/F-7734-2014; Dolezel, Jaroslav/B-7716-2008; Wang,
Shichen/E-6213-2012; Fac Sci, KAU, Biol Sci Dept/L-4228-2013; Faculty
of, Sciences, KAU/E-7305-2017
OI Simkova, Hana/0000-0003-4159-7619; Dolezel,
Jaroslav/0000-0002-6263-0492; Wang, Shichen/0000-0003-1441-2252;
FU U.S. Department of Agriculture National Institute of Food and
Agriculture [2006-35604-17248, 2008-35300-04588, CRIS0219050]; Kansas
Wheat Commission; Grains Research and Development Corporation of
Australia; Ministry of Education, Youth, and Sports of the Czech
Republic and the European Regional Development Fund (Operational
Programme Research and Development for Innovations grant)
[ED0007/01/01]; Kansas Agricultural Experiment Station; Integrated
Genomics Facility
FX This work was supported by the U.S. Department of Agriculture National
Institute of Food and Agriculture (grant nos. 2006-35604-17248 to
B.S.G., 2008-35300-04588 to B.S.G., and CRIS0219050 to E.D.A.), by the
Kansas Wheat Commission (to E.D.A.), by the Grains Research and
Development Corporation of Australia (to M.J.H.), by the Ministry of
Education, Youth, and Sports of the Czech Republic and the European
Regional Development Fund (Operational Programme Research and
Development for Innovations grant no. ED0007/01/01 to H.S. and J.D.),
and by Kansas Agricultural Experiment Station grants to the Wheat
Genetics Resources Center (to B.S.G.) and the Integrated Genomics
Facility (to A.R.A.).
NR 91
TC 45
Z9 45
U1 3
U2 81
PU AMER SOC PLANT BIOLOGISTS
PI ROCKVILLE
PA 15501 MONONA DRIVE, ROCKVILLE, MD 20855 USA
SN 0032-0889
J9 PLANT PHYSIOL
JI Plant Physiol.
PD JAN
PY 2013
VL 161
IS 1
BP 252
EP 265
DI 10.1104/pp.112.205161
PG 14
WC Plant Sciences
SC Plant Sciences
GA 062ZP
UT WOS:000312964000021
PM 23124323
ER
PT J
AU Liu, JJ
Zamany, A
Sniezko, RA
AF Liu, Jun-Jun
Zamany, Arezoo
Sniezko, Richard A.
TI Anti-microbial peptide (AMP): nucleotide variation, gene expression, and
host resistance in the white pine blister rust (WPBR) pathosystem
SO PLANTA
LA English
DT Article
DE Association analysis; Protein expression; Quantitative disease
resistance; Transcript regulation; White pine blister rust
ID DEFENSE-RELATED PROTEINS; CRONARTIUM-RIBICOLA; MACADAMIA-INTEGRIFOLIA;
CANDIDATE GENES; MONTICOLA; ASSOCIATION; IDENTIFICATION; MANAGEMENT;
SOFTWARE; PM-AMP1
AB Pinus monticola antimicrobial peptide (PmAMP1) inhibits growth of Cronartium ribicola and other fungal pathogens. C. ribicola causes white pine blister rust and has resulted in a dramatic reduction of native white pines across North America. Quantitative disease resistance (QDR) is a highly desirable trait screened in breeding programs for durable resistance against C. ribicola. Along with phenotyping on a collection of germplasms, we analyzed PmAMP1 transcript and protein expression and re-sequenced the full-length gene including its promoter region. A mixed linear model was used to identify the association of single nucleotide polymorphisms (SNPs) with accumulated protein and stem QDR levels. Among 16 PmAMP1 SNPs identified in the present study, we found an association of protein levels with 6 SNPs (P < 0.05), including 2 in the 5'-untranslated region (UTR), 3 in the open reading frame (ORF) region with 2 nonsynonymous SNPs, and 1 SNP in the 3'-UTR. Another set of six SNPs was associated with stem QDR levels (P < 0.05), with one localized in the promoter region and the other five in the ORF region with four nonsynonymous changes, suggesting that multiple isoforms may have antifungal activity to differing degrees. Of three common PmAMP1 haplotypes, the trees with haplotype 2 showed high QDR levels with moderate protein abundance while those trees with haplotype 3 exhibited low QDR levels in the susceptible range and the lowest level of protein accumulation. Thus, an association of gene variations with protein abundance and resistance-related traits may facilitate elucidation of physiological contribution of PmAMP1 to host resistance.
C1 [Liu, Jun-Jun; Zamany, Arezoo] Nat Resources Canada, Pacific Forestry Ctr, Canadian Forest Serv, Victoria, BC V8Z 1M5, Canada.
[Sniezko, Richard A.] US Forest Serv, Dorena Genet Resource Ctr, USDA, Cottage Grove, OR 97424 USA.
RP Liu, JJ (reprint author), Nat Resources Canada, Pacific Forestry Ctr, Canadian Forest Serv, 506 W Burnside Rd, Victoria, BC V8Z 1M5, Canada.
EM Jun-Jun.Liu@NRCan-RNCan.gc.ca
FU Canadian Forest Service (CFS); CFS-Genomics R&D Initiative Fund
FX This research was supported in part by the Canadian Forest Service (CFS)
and the CFS-Genomics R&D Initiative Fund awarded to J.-J.L. We thank J.
Hutchinson and L. Baerg at CFS for support on DNA sequencing; J. Hill
and A. Kegley at Dorena Genetic Resource Center (DGRC) for support on
tree resistance assessment.
NR 46
TC 5
Z9 5
U1 2
U2 17
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0032-0935
J9 PLANTA
JI Planta
PD JAN
PY 2013
VL 237
IS 1
BP 43
EP 54
DI 10.1007/s00425-012-1747-2
PG 12
WC Plant Sciences
SC Plant Sciences
GA 063VP
UT WOS:000313030400004
PM 22968909
ER
PT J
AU Martinson, SJ
Ylioja, T
Sullivan, BT
Billings, RF
Ayres, MP
AF Martinson, Sharon J.
Ylioja, Tiina
Sullivan, Brian T.
Billings, Ronald F.
Ayres, Matthew P.
TI Alternate attractors in the population dynamics of a tree-killing bark
beetle
SO POPULATION ECOLOGY
LA English
DT Article
DE Alternate stable states; Dendroctonus; Multiple equilibria; Pinus;
Regime shift; Shared predators
ID SOUTHERN PINE-BEETLE; FOREST INSECT OUTBREAKS; REGIME SHIFTS;
DENDROCTONUS-FRONTALIS; DENSITY-DEPENDENCE; GYPSY-MOTH; GUILD
COLEOPTERA; STABLE STATES; SCOLYTIDAE; COLONIZATION
AB Among the most striking changes in ecosystems are those that happen abruptly and resist return to the original condition (i.e., regime shifts). This frequently involves conspicuous changes in the abundance of one species (e.g., an oubreaking pest or keystone species). Alternate attractors in population dynamics could explain switches between low and high levels of abundance, and could underlie some cases of regime shifts in ecosystems; this longstanding theoretical possibility has been difficult to test in nature. We compared the ability of an alternate attractors model versus two competing models to explain population fluctuations in the tree-killing bark beetle, Dendroctonus frontalis. Frequency distributions of abundance were distinctly bimodal, a prediction of the alternate attractors model, strongly indicating the lack of a single, noisy equilibrium. Time series abundance data refuted the existence of strong delayed density-dependence or nonlinearities, as required by the endogenous cycles model. The model of alternate attractors was further supported by the existence of positive density-dependence at intermediate beetle abundances. Experimental manipulations show that interactions with competitors and shared enemies could create a locally stable equilibrium in small populations of D. frontalis. High variation among regions and years in the abundance of predators and competitors could permit switches between alternate states. Dendroctonus frontalis now provides the strongest case that we know of for alternate attractors in natural population dynamics. The accompanying demographic instability appears to underlie spatially extensive outbreaks that have lasting impacts on forest ecosystems. Understanding feedbacks in populations with alternate attractors can help to identify thresholds underlying regime shifts, and potentially manage them to avoid undesirable impacts.
C1 [Ylioja, Tiina] Finnish Forest Res Inst, FI-01301 Vantaa, Finland.
[Sullivan, Brian T.] US Forest Serv, So Res Stn, USDA, Pineville, LA 71360 USA.
[Billings, Ronald F.] Texas Forest Serv, College Stn, TX 77840 USA.
[Ayres, Matthew P.] Dartmouth Coll, Dept Biol Sci, Hanover, NH 03755 USA.
RP Martinson, SJ (reprint author), 184 Running Iron Rd,5, Bishop, CA 93514 USA.
EM Sharon.J.Martinson@alum.Dartmouth.org
FU NRI/AFRI [2009-65104-05731]; Southern Research Station
FX Maria Lombardero was instrumental in teaching SJM how to identify the
hundreds of insects we found in our traps. Colleagues at the Southern
Research Station provided critical assistance: James Barnett, Calvin
Meier, and Forrest Oliveria assisted in the development of this study,
and Brian Strom, Rich Goyer, Tessa Bauman, Erich Vallery, and Kier
Klepzig provided intellectual and logistical support. Paul Marino, Liz
Wilson, Milica Milunovic, Luke Evans, and Harvey Carreras were excellent
field assistants. Morale was spirited by musical acts across the South,
and by The Littlest Birds. We gratefully acknowledge the generous
cooperation of U.S.F.S. personnel in the Talladega, Kisatchie and De
Soto National Forests. The manuscript benefited from comments by Kathy
Cottingham, David Peart, Andrew Storer and many anonymous reviewers.
Research was financially supported by NRI/AFRI 2009-65104-05731 and a
cooperative agreement with the Southern Research Station.
NR 77
TC 9
Z9 9
U1 2
U2 54
PU SPRINGER JAPAN KK
PI TOKYO
PA CHIYODA FIRST BLDG EAST, 3-8-1 NISHI-KANDA, CHIYODA-KU, TOKYO, 101-0065,
JAPAN
SN 1438-3896
J9 POPUL ECOL
JI Popul. Ecol.
PD JAN
PY 2013
VL 55
IS 1
BP 95
EP 106
DI 10.1007/s10144-012-0357-y
PG 12
WC Ecology
SC Environmental Sciences & Ecology
GA 061TZ
UT WOS:000312872600011
ER
PT J
AU Zimmerman, PL
Housman, IW
Perry, CH
Chastain, RA
Webb, JB
Finco, MV
AF Zimmerman, P. L.
Housman, I. W.
Perry, C. H.
Chastain, R. A.
Webb, J. B.
Finco, M. V.
TI An accuracy assessment of forest disturbance mapping in the western
Great Lakes
SO REMOTE SENSING OF ENVIRONMENT
LA English
DT Article
DE Accuracy assessment; Land cover map; Forest; Land cover change; Landsat
time series stacks
ID TIME-SERIES STACKS; LAND-COVER; MAP ACCURACY; RESOURCES
AB The increasing availability of satellite imagery has spurred the production of thematic land cover maps based on satellite data. These maps are more valuable to the scientific community and land managers when the accuracy of their classifications has been assessed. Here, we assessed the accuracy of a map of forest disturbance in the watersheds of lake Superior and Lake Michigan based on an improved version of the Vegetation Change Tracker algorithm (VCTw). We constructed a probability-based sampling design using two stages of sampling with stratification at each stage. Results are presented for the portion of the map within the U.S. as well as separately for the U.S. portion of Lake Superior's watershed and for lake Michigan's watershed. We also present estimates and standard errors of the percent cover for each land cover class that incorporate both the map's data and our sample data. The overall accuracy for the U.S. portion of the map is estimated to be 91% with a standard error of 0.8%. We discuss the relative strengths of the VCTw algorithm as well as the dependence of such an algorithm's success on the characteristics of the landscape being mapped. Published by Elsevier Inc.
C1 [Zimmerman, P. L.; Perry, C. H.] US Forest Serv, USDA, No Res Stn, St Paul, MN USA.
[Zimmerman, P. L.] Univ Minnesota, Sch Stat, Minneapolis, MN 55455 USA.
[Housman, I. W.; Chastain, R. A.; Webb, J. B.; Finco, M. V.] US Forest Serv, USDA, Remote Sensing Applicat Ctr, Salt Lake City, UT USA.
RP Perry, CH (reprint author), 1992 Folwell Ave, St Paul, MN 55108 USA.
EM charleshperry@fs.fed.us
OI Perry, Charles/0000-0001-9377-5996
FU U.S. EPA Great Lakes Restoration Initiative
FX This work was partially supported by the U.S. EPA Great Lakes
Restoration Initiative. Special thanks are extended to Ray Czaplewski
and Ron McRoberts for reviewing drafts of this manuscript. Anonymous
reviewers' comments were also particularly valuable and their efforts
are greatly appreciated. Any use of trade, product, or firm names is for
descriptive purposes only and does not imply endorsement by the U.S.
Government.
NR 36
TC 11
Z9 11
U1 2
U2 30
PU ELSEVIER SCIENCE INC
PI NEW YORK
PA 360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA
SN 0034-4257
J9 REMOTE SENS ENVIRON
JI Remote Sens. Environ.
PD JAN
PY 2013
VL 128
BP 176
EP 185
DI 10.1016/j.rse.2012.09.017
PG 10
WC Environmental Sciences; Remote Sensing; Imaging Science & Photographic
Technology
SC Environmental Sciences & Ecology; Remote Sensing; Imaging Science &
Photographic Technology
GA 060DV
UT WOS:000312757600014
ER
PT J
AU McRoberts, RE
Naesset, E
Gobakken, T
AF McRoberts, Ronald E.
Naesset, Erik
Gobakken, Terje
TI Inference for lidar-assisted estimation of forest growing stock volume
SO REMOTE SENSING OF ENVIRONMENT
LA English
DT Article
DE Nonlinear logistic regression model; stratified estimator;
model-assisted estimator; model-based estimator
ID POST-STRATIFIED ESTIMATION; SATELLITE IMAGERY; AIRBORNE LASER; AREA;
BIOMASS; MODEL; SIZE
AB Estimates of growing stock volume are reported by the national forest inventories (NFI)of most countries and may serve as the basis for aboveground biomass and carbon estimates as required by an increasing number of international agreements. The probability-based (design-based) statistical estimators traditionally used by NFIs to calculate estimates are generally unbiased and entail only limited computational complexity. However, these estimators often do not produce sufficiently precise estimates for areas with small sample sizes. Model-based estimators may overcome this disadvantage, but they also may be biased and estimation of variances may be computationally intensive. For a minor region within Hedmark County, Norway, the study objective was to compare estimates of mean forest growing stock volume per unit area obtained using probability- and model-based estimators. Three of the estimators rely to varying degrees on maps that were constructed using a nonlinear logistic regression model, forest inventory data, and lidar data. For model-based estimators, methods for evaluating quality of fit of the models and reducing the computational intensity were also investigated. Three conclusions were drawn: the logistic regression model exhibited no serious lack of fit to the data; estimators enhanced using maps produced greater precision than estimates based on only the plot observations; and third, model-based synthetic estimators benefit from sample sizes for larger areas when applied to smaller subsets of the larger areas. Published by Elsevier Inc.
C1 [McRoberts, Ronald E.] US Forest Serv, No Res Stn, St Paul, MN USA.
[Naesset, Erik; Gobakken, Terje] Norwegian Univ Life Sci, Dept Ecol & Nat Resource Management, As, Norway.
RP McRoberts, RE (reprint author), US Forest Serv, No Res Stn, 1992 Fotwell Ave, St Paul, MN USA.
EM rmcroberts@fs.fed.us
NR 32
TC 47
Z9 48
U1 4
U2 73
PU ELSEVIER SCIENCE INC
PI NEW YORK
PA 360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA
SN 0034-4257
J9 REMOTE SENS ENVIRON
JI Remote Sens. Environ.
PD JAN
PY 2013
VL 128
BP 268
EP 275
DI 10.1016/j.rse2012.10.007
PG 8
WC Environmental Sciences; Remote Sensing; Imaging Science & Photographic
Technology
SC Environmental Sciences & Ecology; Remote Sensing; Imaging Science &
Photographic Technology
GA 060DV
UT WOS:000312757600022
ER
PT J
AU Sawhney, APS
Reynolds, M
Allen, H
Slopek, R
Condon, B
AF Sawhney, A. P. S.
Reynolds, M.
Allen, H.
Slopek, R.
Condon, B.
TI Effects of greige cotton lint properties on hydroentangled nonwoven
fabricsEffects of greige cotton lint properties on hydroentangled
nonwoven fabrics
SO TEXTILE RESEARCH JOURNAL
LA English
DT Article
DE classical greige cotton lint; post-gin; pre-cleaned greige cotton lint;
fiber properties; carding; crosslapping; needlepunch; hydroentanglement;
nonwoven fabric properties and absorbency
AB This study determined the effects of fiber length, the length uniformity index, micronaire (fineness), and strength of greige cotton lint on properties of nonwoven fabrics. Seven bales of pre-cleaned greige (non-bleached) cotton were procured from a US cotton producer and ginner. Each bale primarily had only one particular fiber quality parameter (e. g., length, length uniformity, micronaire, or strength) as a significant variable of interest, while other metrics remained subdued to the most practically possible extent. The fiber stock from each separate bale was processed into a lightly needlepunched substrate/fabric and then uniformly converted into a hydroentangled nonwoven fabric structure of the same nominal weight. All of the fibers and fabrics involved in the study were analyzed for their quality attributes. Although this study did not reveal any clear-cut, significant effects (obvious relations or correlations) of the fiber quality variables/metrics investigated, for the first time ever new information has been given that may be useful in the selection of optimally economical cotton for the production of cotton-based nonwoven fabrics for certain applications. At the minimum, this study has demonstrated that, unlike in traditional yarn-based textile processing, the greige cotton lint(s) of (typically) varied fiber metrics could be satisfactorily processed into viable nonwoven fabrics of acceptable physical and mechanical properties, as determined by standard test methods and procedures.
C1 [Sawhney, A. P. S.; Reynolds, M.; Allen, H.; Slopek, R.; Condon, B.] ARS, So Reg Res Ctr, USDA, New Orleans, LA 70124 USA.
RP Sawhney, APS (reprint author), ARS, So Reg Res Ctr, USDA, New Orleans, LA 70124 USA.
EM ap.singh@ars.usda.gov
FU Agricultural Research Service of the USDA
FX This work was supported by the Agricultural Research Service of the
USDA.
NR 15
TC 1
Z9 1
U1 2
U2 8
PU SAGE PUBLICATIONS LTD
PI LONDON
PA 1 OLIVERS YARD, 55 CITY ROAD, LONDON EC1Y 1SP, ENGLAND
SN 0040-5175
J9 TEXT RES J
JI Text. Res. J.
PD JAN
PY 2013
VL 83
IS 1
BP 3
EP 12
DI 10.1177/0040517512452949
PG 10
WC Materials Science, Textiles
SC Materials Science
GA 059LP
UT WOS:000312707200001
ER
PT J
AU Kim, HJ
Moon, HS
Delhom, CD
Zeng, LH
Fang, DD
AF Kim, Hee Jin
Moon, Hong S.
Delhom, Christopher D.
Zeng, Linghe
Fang, David D.
TI Molecular markers associated with the immature fiber (im) gene affecting
the degree of fiber cell wall thickening in cotton (Gossypium hirsutum
L.)
SO THEORETICAL AND APPLIED GENETICS
LA English
DT Article
ID GENOME STRUCTURE; MAP; MUTANT; SSR
AB Cotton fiber fineness and maturity measured indirectly as micronaire (MIC) are important properties of determining fiber grades in the textile market. To understand the genetic control and molecular mechanisms of fiber fineness and maturity, we studied two near isogenic lines, Gossypium hirsutum, Texas Marker-1 wild type (TM-1) and immature fiber (im) mutant showing a significant difference in MIC values. The fibers from im mutant plants were finer and less mature with lower MIC values than those from the recurrent parent, TM-1. A comprehensive fiber property analysis of TM-1 and im mutant showed that the lower MIC of fibers in im mutant was due to the lower degree of fiber cell wall thickening as compared to the TM-1 fibers. Using an F-2 population comprising 366 progenies derived from a cross between TM-1 and im mutant, we confirmed that the immature fiber phenotype present in a mutant plant was controlled by one single recessive gene im. Furthermore, we identified 13 simple sequence repeat markers that were closely linked to the im gene located on chromosome 3. Molecular markers associated with the im gene will lay the foundation to further investigate genetic information required for improving cotton fiber fineness and maturity.
C1 [Kim, Hee Jin; Moon, Hong S.; Fang, David D.] USDA ARS, So Reg Res Ctr, Cotton Fiber Biosci Res Unit, New Orleans, LA 70124 USA.
[Delhom, Christopher D.] USDA ARS, So Reg Res Ctr, Cotton Struct & Qual Res Unit, New Orleans, LA 70124 USA.
[Zeng, Linghe] USDA ARS, Crop Genet Res Unit, Stoneville, MS 38776 USA.
RP Fang, DD (reprint author), USDA ARS, So Reg Res Ctr, Cotton Fiber Biosci Res Unit, 1100 Robert E Lee Blvd, New Orleans, LA 70124 USA.
EM david.fang@ars.usda.gov
OI fang, david/0000-0003-0036-5459
FU USDA-ARS; Cotton Incorporated
FX This work was supported by the USDA-ARS, and Cotton Incorporated. We
thank Dr. Russell J. Kohel of USDA-ARS-SPARC for providing cottonseeds
of TM-1 and im mutant and Dr. Barbara Triplett of USDA-ARS-SRRC for
growing cotton in 2007 and 2008. The authors acknowledge Ms. Holly King
and Jeannine Moraitis for fiber measurements and image analyses, Ms.
Ping Li for assistances of mapping, Ms. Olga Richard, Shannon Combe, and
LaTonya Holmes Suber for assistances of collecting fiber samples. We
also thank Mrs Sheron Simpson and Dr. Brian Scheffler at Genomic and
Bioinformatic Research Unit at Stoneville, MS for their excellent
support in SSR marker analysis. Mention of trade names or commercial
products in this publication is solely for the purpose of providing
specific information and does not imply recommendation or endorsement by
the USDA that is an equal opportunity employer.
NR 19
TC 9
Z9 9
U1 0
U2 2
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0040-5752
J9 THEOR APPL GENET
JI Theor. Appl. Genet.
PD JAN
PY 2013
VL 126
IS 1
BP 23
EP 31
DI 10.1007/s00122-012-1956-x
PG 9
WC Agronomy; Plant Sciences; Genetics & Heredity; Horticulture
SC Agriculture; Plant Sciences; Genetics & Heredity
GA 064FF
UT WOS:000313056900003
PM 22890806
ER
PT J
AU Gong, L
Hulke, BS
Gulya, TJ
Markell, SG
Qi, LL
AF Gong, L.
Hulke, B. S.
Gulya, T. J.
Markell, S. G.
Qi, L. L.
TI Molecular tagging of a novel rust resistance gene R (12) in sunflower
(Helianthus annuus L.)
SO THEORETICAL AND APPLIED GENETICS
LA English
DT Article
ID MILDEW PLASMOPARA-HALSTEDII; MARKER-ASSISTED SELECTION; DOWNY MILDEW;
DISEASE-RESISTANCE; PUCCINIA-HELIANTHI; CULTIVATED SUNFLOWER; PL5/PL8
LOCUS; NORTH-DAKOTA; REGISTRATION; GERMPLASM
AB Sunflower production in North America has recently suffered economic losses in yield and seed quality from sunflower rust (Puccinia helianthi Schwein.) because of the increasing incidence and lack of resistance to new rust races. RHA 464, a newly released sunflower male fertility restorer line, is resistant to both of the most predominant and most virulent rust races identified in the Northern Great Plains of the USA. The gene conditioning rust resistance in RHA 464 originated from wild Helianthus annuus L., but has not been molecularly marked or determined to be independent from other rust loci. The objectives of this study are to identify molecular markers linked to the rust resistance gene and to investigate the allelism of this gene with the unmapped rust resistance genes present in HA-R6, HA-R8 and RHA 397. Virulence phenotypes of seedlings for the F-2 population and F-2:3 families suggested that a single dominant gene confers rust resistance in RHA 464, and this gene was designated as R (12) . Bulked segregant analysis identified ten markers polymorphic between resistant and susceptible bulks. In subsequent genetic mapping, the ten markers covered 33.4 cM of genetic distance on linkage group 11 of sunflower. A co-dominant marker CRT275-11 is the closest marker distal to R (12) with a genetic distance of 1.0 cM, while ZVG53, a dominant marker linked in the repulsion phase, is proximal to R (12) with a genetic distance of 9.6 cM. The allelism test demonstrated that R (12) is not allelic to the rust resistance genes in HA-R6, HA-R8 and RHA 397, and it is also not linked to any previously mapped rust resistance genes. Discovery of the R (12) novel rust resistance locus in sunflower and associated markers will potentially support the molecular marker-assisted introgression and pyramiding of R (12) into sunflower breeding lines.
C1 [Gong, L.; Markell, S. G.] N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58102 USA.
[Hulke, B. S.; Gulya, T. J.; Qi, L. L.] ARS, No Crop Sci Lab, USDA, Fargo, ND 58102 USA.
RP Qi, LL (reprint author), ARS, No Crop Sci Lab, USDA, 1605 Albrecht Blvd N, Fargo, ND 58102 USA.
EM lili.qi@ars.usda.gov
FU USDA-AMS [12-25-B-0942]
FX We thank Drs. Gerald Seiler and Steven Xu for critical review of the
manuscript and Angelia Hogness for technical assistance. This project
was supported by the USDA-AMS Cooperative Agreement 12-25-B-0942.
NR 55
TC 10
Z9 10
U1 1
U2 17
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0040-5752
J9 THEOR APPL GENET
JI Theor. Appl. Genet.
PD JAN
PY 2013
VL 126
IS 1
BP 93
EP 99
DI 10.1007/s00122-012-1962-z
PG 7
WC Agronomy; Plant Sciences; Genetics & Heredity; Horticulture
SC Agriculture; Plant Sciences; Genetics & Heredity
GA 064FF
UT WOS:000313056900009
PM 22907633
ER
PT J
AU Saha, S
Wu, J
Jenkins, JN
McCarty, JC
Stelly, DM
AF Saha, S.
Wu, J.
Jenkins, J. N.
McCarty, J. C.
Stelly, D. M.
TI Interspecific chromosomal effects on agronomic traits in Gossypium
hirsutum by AD analysis using intermated G-barbadense chromosome
substitution lines
SO THEORETICAL AND APPLIED GENETICS
LA English
DT Article
ID UPLAND COTTON CULTIVARS; VARIANCE-COMPONENTS; FIBER QUALITY; GENETIC
VARIANCE; IMPROVEMENT; GERMPLASM; YIELD; INTROGRESSION; ENVIRONMENTS;
TOPCROSSES
AB The untapped potential of the beneficial alleles from Gossypium barbadense L. has not been well utilized in G. hirsutum L. (often referred to as Upland cotton) breeding programs. This is primarily due to genomic incompatibility and technical challenges associated with conventional methods of interspecific introgression. In this study, we used a hypoaneuploid-based chromosome substitution line as a means for systematically introgressing G. barbadense doubled-haploid line '3-79' germplasm into a common Upland genetic background, inbred 'Texas marker-1' ('TM-1'). We reported on the chromosomal effects, lint percentage, boll weight, seedcotton yield and lint yield in chromosome substitution CS-B (G. barbadense L.) lines. Using an additive-dominance genetic model, we studied the interaction of alleles located on two alien substituted chromosomes versus one alien substituted chromosome using a partial diallel mating design of selected CS-B lines (CS-B05sh, CS-B06, CS-B09, CS-B10, CS-B12, CS-B17 and CS-B18). Among these parents, CS-B09 and CS-B10 were reported for the first time. The donor parent 3-79, had the lowest additive effect for all of the agronomic traits. All of the CS-B lines had significant additive effects with boll weight and lint percentage. CS-B10 had the highest additive effects for lint percentage, and seedcotton and lint yield among all of the lines showing a transgressive genetic mode of inheritance for these traits. CS-B09 had greater additive genetic effects on lint yield, while CS-B06, CS-B10 and CS-B17 had superior additive genetic effects on both lint and seedcotton yield compared to TM-1 parent. The 3-79 line had the highest dominance effects for boll weight (0.513 g) and CS-B10 had the lowest dominance effect for boll weight (-0.702). Some major antagonistic genetic effects for the agronomic traits were present with most of the substituted chromosomes and chromosome arms, a finding suggested their recalcitrance to conventional breeding efforts. The results revealed that the substituted chromosomes and arms of 3-79 carried some cryptic beneficial alleles with potential to improve agronomic traits including yield, whose effects were masked at the whole genome level in 3-79.
C1 [Saha, S.; Jenkins, J. N.; McCarty, J. C.] ARS, USDA, Crop Sci Res Lab, Mississippi State, MS 39762 USA.
[Wu, J.] S Dakota State Univ, Dept Plant Sci, Brookings, SD 57007 USA.
[Stelly, D. M.] Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA.
RP Saha, S (reprint author), ARS, USDA, Crop Sci Res Lab, 810 Highway 12 E, Mississippi State, MS 39762 USA.
EM Sukumar.saha@ars.usda.gov
OI Stelly, David/0000-0002-3468-4119
FU Texas AgriLife Research; Cotton Inc.; Texas State Support Committee;
Texas Dept. Agriculture Food & Fiber Research Grant Program
FX We thank Ms. Lillie Hendrix and Dr. Russell Hayes for helping in field
and greenhouse research. We acknowledge partial support from the
following sources: Texas AgriLife Research, Cotton Inc., Texas State
Support Committee and Texas Dept. Agriculture Food & Fiber Research
Grant Program. The Joint publication of USDA/ARS, Mississippi
Agricultural and Forestry Experiment Station, approved for publication
as Journal Article No. 12090 of the Mississippi Agricultural and
Forestry Experiment Station.
NR 36
TC 12
Z9 13
U1 1
U2 21
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0040-5752
J9 THEOR APPL GENET
JI Theor. Appl. Genet.
PD JAN
PY 2013
VL 126
IS 1
BP 109
EP 117
DI 10.1007/s00122-012-1965-9
PG 9
WC Agronomy; Plant Sciences; Genetics & Heredity; Horticulture
SC Agriculture; Plant Sciences; Genetics & Heredity
GA 064FF
UT WOS:000313056900011
PM 22945267
ER
PT J
AU Ruddle, P
Whetten, R
Cardinal, A
Upchurch, RG
Miranda, L
AF Ruddle, Paul, II
Whetten, Rebecca
Cardinal, Andrea
Upchurch, Robert G.
Miranda, Lilian
TI Effect of a novel mutation in a Delta 9-stearoyl-ACP-desaturase on
soybean seed oil composition
SO THEORETICAL AND APPLIED GENETICS
LA English
DT Article
ID HIGH STEARIC-ACID; QUANTITATIVE TRAIT LOCI; MUTANTS; QTL; REGISTRATION;
INHERITANCE; GERMPLASM; LIPIDS; GENE
AB Soybean [Glycine max (L.) Merr.] oil typically contains 2-4 % stearic acid. Seed oil with 20 % stearic acid would be useful for solid fat applications, both for its cooking properties and health benefits. Breeding lines with high stearic acid have been developed, but many suffer from agronomic problems. This study identifies a new source of high stearic acid, determines its relationship with another high stearic locus and presents molecular markers for it is use in breeding. TCJWB03-806-7-19, a 'Holladay' mutant with high stearic acid, was crossed to two FAM94-41-derived lines that contained a point mutation in a seed-specific isoform of a Delta 9-stearoyl-acyl carrier protein-desaturase (SACPD-C). Fatty acid analysis was performed over two growing seasons with F (2)-derived lines and transgressive segregation for stearic acid content was observed. Sequencing of SACPD isoforms in TCJWB03-806-7-19 revealed the deletion of an 'A' nucleotide in exon 3 of SACPD-B, which results in a protein whose final 28 amino acids are predicted to differ from Williams 82 SACPD-B. Sorting intolerant from tolerant (SIFT) analysis revealed that this frameshift mutation may affect SACPD-B protein function. Allele-specific genotyping for the SACPD-C point mutation and SACPD-B nucleotide deletion was performed in both populations. Additive effects and R (2) for stearic acid were +3.3 and 0.55 for SACPD-C and +1.9 and 0.19 for SACPD-B. Average stearic acid in lines homozygous for both mutations was 14.6 %. This SACPD-B mutation represents a novel high stearic allele.
C1 [Ruddle, Paul, II; Whetten, Rebecca; Cardinal, Andrea] N Carolina State Univ, Dept Crop Sci, Raleigh, NC 27695 USA.
[Upchurch, Robert G.; Miranda, Lilian] USDA ARS, Raleigh, NC 27607 USA.
RP Miranda, L (reprint author), USDA ARS, 3127 Ligon St, Raleigh, NC 27607 USA.
EM Lilian.Miranda@ars.usda.gov
FU United Soybean Board; North Carolina Soybean Producers Association
FX This research was supported in part by the United Soybean Board and the
North Carolina Soybean Producers Association. The authors thank Dr.
Thomas Carter Jr. for supplying TCJWB03-806-7-19 for use in this study
and for reviewing this manuscript. The authors also thank W. Novitzky
for training and assistance provided in the seed oil analysis and the
undergraduate part-time workers at the Soybean and Nitrogen Fixation
Unit (USDA-ARS, NC State University, Raleigh) for assistance in
collecting leaf tissue for DNA extraction. Mention of trade names or
commercial products in this article is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the US Department of Agriculture.
NR 47
TC 10
Z9 11
U1 0
U2 15
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0040-5752
J9 THEOR APPL GENET
JI Theor. Appl. Genet.
PD JAN
PY 2013
VL 126
IS 1
BP 241
EP 249
DI 10.1007/s00122-012-1977-5
PG 9
WC Agronomy; Plant Sciences; Genetics & Heredity; Horticulture
SC Agriculture; Plant Sciences; Genetics & Heredity
GA 064FF
UT WOS:000313056900021
PM 22961205
ER
PT J
AU Entry, JA
Mills, D
Jayachandran, K
Sojka, RE
AF Entry, James A.
Mills, DeEtta
Jayachandran, Krish
Sojka, R. E.
TI High Polyacrylamide Application Rates Do Not Affect Eubacterial
Structural Diversity
SO WATER AIR AND SOIL POLLUTION
LA English
DT Article
DE Anionic polyacrylamide; DNA; Amplicon length heterogeneity; Bacterial
diversity
ID FURROW-IRRIGATION; REDUCE EROSION; WASTE-WATER; SOIL; MICROORGANISMS;
DEGRADATION; ACRYLAMIDE; RUNOFF; INFILTRATION; ADDITIVES
AB Anionic polyacrylamide (PAM) is a linear, water-soluble anionic polymer that is widely used for erosion control and water quality protection. There has been an issue whether this formulation could possibly have negative effects on soil microbial diversity by altering microbial binding to soil particles or to one another and thus restricting their mobility and role in carbon and nutrient cycling. We conducted an 8-year study annually applying ultra-high rates of PAM to soil and then monitored impacts on soil bacterial diversity. In July and August, we measured active soil bacterial and fungal biomass and microbial diversity in soils receiving 0 (control), 2,691, and 5,382 kg active ingredient PAMha(-1). Active microbial biomass in soil was 19-33 % greater in the untreated control than soil treated with 2,691 or 5,382 kg of active ingredient PAMha(-1). Active bacterial biomass in soil was 21-31 % greater in the control treatment than in soil treated with 2,691 or 5,382 kg of active ingredient PAMha-1 in August, but not July. Active fungal biomass in soils was 38-50 % greater in the control treatment than soil treated with 2,691 or 5,382 kg of active ingredient PAMha(-1) in July, but not August. Molecular methods were used to access the bacterial diversity, richness, and evenness in an agricultural soil that received 0 (control), 2,691, and 5,382 kg of active ingredient PAMha(-1). We found that although soil receiving these massive PAM application rates and prolonged exposure may reduce active bacterial and fungal biomass, PAM application did not substantially or consistently affect bacterial structural diversity, richness, or evenness in this agricultural soil.
C1 [Entry, James A.; Sojka, R. E.] ARS, USDA, NW Irrigat & Soils Res Lab, Kimberly, ID 83341 USA.
[Mills, DeEtta] Florida Int Univ, Dept Biol Sci, Miami, FL 33199 USA.
[Jayachandran, Krish] Florida Int Univ, Dept Earth & Environm Sci, Miami, FL 33199 USA.
RP Entry, JA (reprint author), Nutrigrown LLC, 9250 Bendix Rd,Suite 405, Columbia, MD 21045 USA.
EM jim.entry@nutrigrown.com
RI Mills, DeEtta/G-8532-2015
OI Mills, DeEtta/0000-0002-9977-7834
NR 37
TC 0
Z9 1
U1 3
U2 23
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0049-6979
J9 WATER AIR SOIL POLL
JI Water Air Soil Pollut.
PD JAN
PY 2013
VL 224
IS 1
AR 1382
DI 10.1007/s11270-012-1382-3
PG 10
WC Environmental Sciences; Meteorology & Atmospheric Sciences; Water
Resources
SC Environmental Sciences & Ecology; Meteorology & Atmospheric Sciences;
Water Resources
GA 063PP
UT WOS:000313012500024
ER
PT J
AU Ouyang, Y
Leininger, TD
Hatten, J
Parajuli, PB
AF Ouyang, Ying
Leininger, Theodor D.
Hatten, Jeff
Parajuli, Prem B.
TI A STELLA Model to Estimate Soil CO2 Emissions from a Short-Rotation
Woody Crop
SO WATER AIR AND SOIL POLLUTION
LA English
DT Article
DE CO2 emission; Short-rotation woody crop; Soil temperature; STELLA model
ID GLOBAL CLIMATE MODEL; MICROBIAL BIOMASS; SURFACE; TEMPERATURE;
TRANSPORT; ECOSYSTEM; DYNAMICS; GROWTH; OXYGEN
AB The potential for climatic factors as well as soil-plant-climate interactions to change as a result of rising levels of atmospheric CO2 concentration is an issue of increasing international environmental concern. Agricultural and forest practices and managements may be important contributors to mitigating elevated atmospheric CO2 concentrations. A computer model was developed using the Structural Thinking and Experiential Learning Laboratory with Animation (STELLA) software for soil CO2 emissions from a short-rotation woody crop as affected by soil water and temperature regimes, root and microbial respiration, and surficial processes such as rainfall, irrigation, and evapotranspiration. The resulting model was validated with good agreement between the model predictions and the experimental measurements prior to its applications. Two scenarios were then chosen to estimate both diurnal and annual soil CO2 emissions from a 1-ha mature cottonwood plantation as affected by soil temperature, soil (i.e., root and microbial) respiration, and irrigation. The simulation resulted in typical diurnal soil respiration and CO2 emission patterns, with increases from morning to early afternoon and decreases from early afternoon to midnight. This pattern was driven by diurnal soil temperature variations, indicating that soil temperature was the main influence on soil respiration and CO2 efflux into the atmosphere. Our simulations further revealed that the average seasonal soil respiration rate in summer was 1.6 times larger than in winter, whereas the average seasonal CO2 emission rate in summer was 1.77 times larger than in winter. Characteristic annual variation patterns for soil respiration and CO2 emission also were modeled, with both increasing from January 1 through June 30 followed by steady declines from September 1 through December 31. These results suggest that the STELLA model developed is a useful tool for estimating soil CO2 emission from a short-rotation woody crop plantation.
C1 [Ouyang, Ying] US Forest Serv, USDA, Ctr Bottomland Hardwoods Res, Mississippi State, MS 39762 USA.
[Leininger, Theodor D.] US Forest Serv, USDA, Ctr Bottomland Hardwoods Res, Stoneville, MS 38776 USA.
[Hatten, Jeff] Mississippi State Univ, Dept Forestry, Mississippi State, MS 39762 USA.
[Parajuli, Prem B.] Mississippi State Univ, Dept Agr & Biol Engn, Mississippi State, MS 39762 USA.
RP Ouyang, Y (reprint author), US Forest Serv, USDA, Ctr Bottomland Hardwoods Res, 100 Stone Blvd,Thompson Hall,Room 309, Mississippi State, MS 39762 USA.
EM youyang@fs.fed.us
RI Hatten, Jeff/E-7742-2010
OI Hatten, Jeff/0000-0002-1685-6351
NR 42
TC 1
Z9 1
U1 3
U2 68
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0049-6979
J9 WATER AIR SOIL POLL
JI Water Air Soil Pollut.
PD JAN
PY 2013
VL 224
IS 1
AR 1392
DI 10.1007/s11270-012-1392-1
PG 12
WC Environmental Sciences; Meteorology & Atmospheric Sciences; Water
Resources
SC Environmental Sciences & Ecology; Meteorology & Atmospheric Sciences;
Water Resources
GA 063PP
UT WOS:000313012500031
ER
PT J
AU Beskow, S
Norton, LD
Mello, CR
AF Beskow, Samuel
Norton, Lloyd D.
Mello, Carlos R.
TI Hydrological Prediction in a Tropical Watershed Dominated by Oxisols
Using a Distributed Hydrological Model
SO WATER RESOURCES MANAGEMENT
LA English
DT Article
DE Hydrological modeling; GIS; Stream flow; Land use
ID LAND-USE CHANGES; INSTANTANEOUS UNIT-HYDROGRAPH; SOIL-EROSION MODEL;
RIVER-BASIN; FLOOD HYDROGRAPH; UNGAUGED BASINS; ASSESSMENT-TOOL; SURFACE
RUNOFF; SIMULATION; CATCHMENT
AB Hydrological models have been used in many places of the world in order to support practitioners with respect to watershed management actions. The goal of this research was to apply the Lavras Simulation of Hydrology (LASH model) to a Brazilian tropical watershed dominated by Oxisols, to estimate maximum, minimum and mean stream flows for both current land-use ("scenario 1") and other regional trend land-use scenarios ("scenario 2"aEuro"pasture into eucalyptus; and "scenario 3"aEuro"eucalyptus into pasture). This model is a continuous, distributed and semi-conceptual model for simulation of different hydrological components on a daily basis. The model had a good performance with respect to the "scenario 1", resulting in Nash-Sutcliffe coefficients equal to 0.81, 0.82 and 0.98 for minimum, maximum and mean discharges, respectively. When "scenario 2" was simulated, it was found that minimum, mean and maximum stream flows had their values reduced in average by 7.39 %, 13.84 % and 20.38 %, respectively. On the contrary, it was observed in "scenario 3" an increase in average by 0.23 %, 0.44 % and 1.19 % for minimum, mean and maximum stream flows, respectively. With respect to water yield, scenario 2 resulted in a mean reduction of 119 mm, whereas for scenario 3 the difference was not so pronounced in relation to the current land use. Results obtained in scenario 2 are troublesome since this watershed drains into an important regional Hydroelectric Power Plant Reservoir and this approach needs to be considered by the Minas Gerais State electric energy company for its planning strategies for the future.
C1 [Beskow, Samuel] Univ Fed Pelotas, Ctr Technol Dev Water Resources Engn, BR-96010670 Pelotas, RS, Brazil.
[Norton, Lloyd D.] Purdue Univ, ARS, USDA, Natl Soil Eros Res Lab, W Lafayette, IN 47907 USA.
[Mello, Carlos R.] Univ Fed Lavras, Dept Engn, Soil & Water Engn Grp, BR-37200000 Lavras, MG, Brazil.
RP Beskow, S (reprint author), Univ Fed Pelotas, Ctr Technol Dev Water Resources Engn, 01 Gomes Carneiro, BR-96010670 Pelotas, RS, Brazil.
EM samuel.beskow@ufpel.edu.br
RI de Mello, Carlos/G-5821-2012
OI de Mello, Carlos/0000-0002-6033-5342
FU CNPq; FAPEMIG [PPM VI 068/12]; USDA-ARS National Soil Erosion Research
Laboratory at Purdue University
FX The authors wish to thank CNPq for financial support of this research
and scholarships to the first and third authors, to FAPEMIG (PPM VI
068/12) and to the USDA-ARS National Soil Erosion Research Laboratory at
Purdue University for supporting this research.
NR 76
TC 8
Z9 8
U1 2
U2 32
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0920-4741
J9 WATER RESOUR MANAG
JI Water Resour. Manag.
PD JAN
PY 2013
VL 27
IS 2
BP 341
EP 363
DI 10.1007/s11269-012-0189-8
PG 23
WC Engineering, Civil; Water Resources
SC Engineering; Water Resources
GA 061XW
UT WOS:000312884600002
ER
PT J
AU O'Connor, TM
Hilmers, A
Watson, K
Baranowski, T
Giardino, AP
AF O'Connor, T. M.
Hilmers, A.
Watson, K.
Baranowski, T.
Giardino, A. P.
TI Feasibility of an obesity intervention for paediatric primary care
targeting parenting and children: Helping HAND
SO CHILD CARE HEALTH AND DEVELOPMENT
LA English
DT Article
DE child; intervention; obesity; parenting; paediatric; primary care
ID RANDOMIZED CONTROLLED-TRIAL; BODY-MASS INDEX; CHILDHOOD OBESITY;
PHYSICAL-ACTIVITY; DIETARY-INTAKE; TELEVISION; PREVENTION; ADOLESCENTS;
HEALTH; RECOMMENDATIONS
AB Background The primary care setting offers the opportunity to reach children and parents to encourage healthy lifestyle behaviours, and improve weight status among children.
Objective Test the feasibility of Helping HAND (Healthy Activity and Nutrition Directions), an obesity intervention for 5- to 8-year-old children in primary care clinics. Methods A randomized controlled pilot study of Helping HAND, a 6-month intervention, targeted children with body mass index 85-99% tile and their parents. Intervention group attended monthly sessions and self-selected child behaviours and parenting practices to change. Control group received regular paediatric care and was wait-listed for Helping HAND. Session completion, participant satisfaction, child anthropometrics, dietary intake, physical activity, TV viewing and behaviour-specific parenting practices were measured pre and post intervention.
Results Forty parent-child dyads enrolled: 82.5% were Hispanic, 80% had a girl and 65% reported income <=$ 30 000/year. There was 20% attrition from Helping HAND (attended <4/6 sessions). Families self-selected 4.35 (SD 1.75) behaviours to target during the 6-month programme and each of the seven behaviours was selected by 45-80% of the families. There were no between group differences in the child's body mass index z-score, dietary intake or physical activity post intervention. Intervention group viewed 14.9 (SE 2.3) h/week of TV post intervention versus control group 23.3 (SE 2.4) h/week (P < 0.05).
Conclusion Helping HAND is feasible, due to low attrition, good programme attendance, and clinically relevant improvements in some child and parenting behaviours.
C1 [O'Connor, T. M.; Hilmers, A.; Watson, K.; Baranowski, T.] Baylor Coll Med, Childrens Nutr Res Ctr, Dept Pediat, USDA ARS, Houston, TX 77030 USA.
[Giardino, A. P.] Texas Childrens Hlth Plan, Houston, TX USA.
RP O'Connor, TM (reprint author), Baylor Coll Med, Childrens Nutr Res Ctr, Dept Pediat, USDA ARS, 1100 Bates St, Houston, TX 77030 USA.
EM teresiao@bcm.edu
OI Hilmers, Angela/0000-0001-7640-0308; Baranowski, Tom/0000-0002-0653-2222
FU USDA/ARS [6250-51000]; Gillson Longen-baugh Foundation BCM
FX This work is a publication of the US Department of Agriculture
(USDA/ARS) Children's Nutrition Research Center, Department of
Pediatrics, BCM funded in part by the USDA/ARS (Cooperative Agreement
6250-51000) and the Gillson Longen-baugh Foundation BCM Seed Funds. The
contents of this publication do not necessarily reflect the views or
policies of the USDA, nor does mention of organizations imply
endorsement from the US government. ClinicalTrials.gov registration
number: NCT01195012.
NR 26
TC 16
Z9 16
U1 2
U2 34
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0305-1862
J9 CHILD CARE HLTH DEV
JI Child Care Health Dev.
PD JAN
PY 2013
VL 39
IS 1
BP 141
EP 149
DI 10.1111/j.1365-2214.2011.01344.x
PG 9
WC Psychology, Developmental; Pediatrics
SC Psychology; Pediatrics
GA 053XG
UT WOS:000312308000018
PM 22066521
ER
PT J
AU Weiler, S
Low, SA
AF Weiler, Stephan
Low, Sarah A.
TI Measurement and Storytelling in Regional Science: An Intergenerational
Perspective on Lessons Learned from Andrew Isserman
SO INTERNATIONAL REGIONAL SCIENCE REVIEW
LA English
DT Biographical-Item
DE rural development; quantitative; qualitative; case studies; defining
rural; defining entrepreneurship
AB We first review Andy's lessons to us on the potential contributions of storytelling in regional science. We then review Andy's lessons on how measurement and definitions affect regional science research by focusing on Andy's and our own work. We see this research through the lens of measurement and offer our suggestions for what is next.
C1 [Low, Sarah A.] Econ Res Serv, USDA, Washington, DC 20024 USA.
[Weiler, Stephan] Colorado State Univ, Ft Collins, CO 80523 USA.
RP Weiler, S (reprint author), Econ Res Serv, USDA, 355 E St SW, Washington, DC 20024 USA.
EM slow@ers.usda.gov
NR 1
TC 0
Z9 0
U1 1
U2 4
PU SAGE PUBLICATIONS INC
PI THOUSAND OAKS
PA 2455 TELLER RD, THOUSAND OAKS, CA 91320 USA
SN 0160-0176
J9 INT REGIONAL SCI REV
JI Int. Reg. Sci. Rev.
PD JAN
PY 2013
VL 36
IS 1
BP 69
EP 80
DI 10.1177/0160017612462720
PG 12
WC Environmental Studies; Planning & Development; Urban Studies
SC Environmental Sciences & Ecology; Public Administration; Urban Studies
GA 057FX
UT WOS:000312549400007
ER
PT J
AU Williams, MS
Ebel, ED
Cao, Y
AF Williams, M. S.
Ebel, E. D.
Cao, Y.
TI Fitting distributions to microbial contamination data collected with an
unequal probability sampling design
SO JOURNAL OF APPLIED MICROBIOLOGY
LA English
DT Article
DE maximum likelihood estimation; risk assessment; sample design
ID MODEL-BASED INFERENCE; WEIGHTED DISTRIBUTIONS; ESCHERICHIA-COLI; BEEF;
SALMONELLA
AB Aims The fitting of statistical distributions to microbial sampling data is a common application in quantitative microbiology and risk assessment applications. An underlying assumption of most fitting techniques is that data are collected with simple random sampling, which is often times not the case. This study develops a weighted maximum likelihood estimation framework that is appropriate for microbiological samples that are collected with unequal probabilities of selection. Methods and Results A weighted maximum likelihood estimation framework is proposed for microbiological samples that are collected with unequal probabilities of selection. Two examples, based on the collection of food samples during processing, are provided to demonstrate the method and highlight the magnitude of biases in the maximum likelihood estimator when data are inappropriately treated as a simple random sample. Conclusions Failure to properly weight samples to account for how data are collected can introduce substantial biases into inferences drawn from the data. Significance and Impact of the Study The proposed methodology will reduce or eliminate an important source of bias in inferences drawn from the analysis of microbial data. This will also make comparisons between studies and the combination of results from different studies more reliable, which is important for risk assessment applications.
C1 [Williams, M. S.; Ebel, E. D.; Cao, Y.] Food Safety Inspect Serv, Risk Assessment Div, Off Publ Hlth Sci, USDA, Ft Collins, CO 80526 USA.
RP Williams, MS (reprint author), Food Safety Inspect Serv, Risk Assessment Div, Off Publ Hlth Sci, USDA, 2150 Ctr Ave,Bldg D, Ft Collins, CO 80526 USA.
EM mike.williams@fsis.usda.gov
NR 32
TC 2
Z9 2
U1 0
U2 5
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1364-5072
EI 1365-2672
J9 J APPL MICROBIOL
JI J. Appl. Microbiol.
PD JAN
PY 2013
VL 114
IS 1
BP 152
EP 160
DI 10.1111/jam.12019
PG 9
WC Biotechnology & Applied Microbiology; Microbiology
SC Biotechnology & Applied Microbiology; Microbiology
GA 057CL
UT WOS:000312539400014
PM 22984838
ER
PT J
AU Franco, W
Perez-Diaz, IM
AF Franco, W.
Perez-Diaz, I. M.
TI Microbial interactions associated with secondary cucumber fermentation
SO JOURNAL OF APPLIED MICROBIOLOGY
LA English
DT Article
DE Clostridium; Enterobacter; oxidative yeasts; secondary cucumber
fermentation; spoilage lactic acid bacteria
ID LACTIC-ACID BACTERIA; SODIUM-CHLORIDE; SPOILAGE; YEASTS; CLOSTRIDIUM;
GROWTH; OXYGEN; MODEL; PH
AB Aims To evaluate the interaction between selected yeasts and bacteria and associate their metabolic activity with secondary cucumber fermentation. Methods and Results Selected yeast and bacteria, isolated from cucumber secondary fermentations, were inoculated as single and mixed cultures in a cucumber juice model system. Our results confirmed that during storage of fermented cucumbers and in the presence of oxygen, spoilage yeasts are able to grow and utilize the lactic and acetic acids present in the medium, which results in increased brine pH and the chemical reduction in the environment. These conditions favour opportunistic bacteria that continue the degradation of lactic acid. Lactobacillus buchneri, Clostridium bifermentans and Enterobacter cloacae were able to produce acetic, butyric and propionic acids, respectively, when inoculated in the experimental medium at pH 4.6. Yeast and bacteria interactions favoured the survival of Cl. bifermentans and E. cloacae at the acidic pH typical of fermented cucumbers (3.2), but only E. cloacae was able to produce a secondary product. Conclusions The methodology used in this study confirmed that a complex microbiota is responsible for the changes observed during fermented cucumber secondary fermentation and that certain microbial interactions may be essential for the production of propionic and butyric acids. Significance and Impact of the Study Understanding the dynamics of the development of secondary cucumber fermentation aids in the identification of strategies to prevent its occurrence and economic losses for the pickling industry.
C1 [Perez-Diaz, I. M.] N Carolina State Univ, USDA, ARS, SAA Food Sci Res Unit, Raleigh, NC 27695 USA.
[Franco, W.; Perez-Diaz, I. M.] N Carolina State Univ, Dept Food Bioproc & Nutr Sci, Raleigh, NC 27695 USA.
RP Perez-Diaz, IM (reprint author), N Carolina State Univ, USDA, ARS, SAA Food Sci Res Unit, 322 Schaub Hall,Box 7624, Raleigh, NC 27695 USA.
EM Ilenys.Perez-Diaz@ars.usda.gov
NR 27
TC 4
Z9 5
U1 5
U2 46
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1364-5072
J9 J APPL MICROBIOL
JI J. Appl. Microbiol.
PD JAN
PY 2013
VL 114
IS 1
BP 161
EP 172
DI 10.1111/jam.12022
PG 12
WC Biotechnology & Applied Microbiology; Microbiology
SC Biotechnology & Applied Microbiology; Microbiology
GA 057CL
UT WOS:000312539400015
PM 23013318
ER
PT J
AU Milner, MJ
Seamon, J
Craft, E
Kochian, LV
AF Milner, Matthew J.
Seamon, Jesse
Craft, Eric
Kochian, Leon V.
TI Transport properties of members of the ZIP family in plants and their
role in Zn and Mn homeostasis
SO JOURNAL OF EXPERIMENTAL BOTANY
LA English
DT Article
DE Arabidopsis; AtZIP1; AtZIP2; Mn transport; Zip transporters; Zn
transport
ID DURUM-WHEAT CULTIVARS; ARABIDOPSIS-THALIANA; METAL TRANSPORTER;
SACCHAROMYCES-CEREVISIAE; ZINC TRANSPORTERS; INTACT SEEDLINGS; UPTAKE
SYSTEM; GENE ENCODES; IRON UPTAKE; EXPRESSION
AB A better understanding of the role of the Arabidopsis ZIP family of micronutrient transporters is necessary in order to advance our understanding of plant Zn, Fe, Mn, and Cu homeostasis. In the current study, the 11 Arabidopsis ZIP family members not yet well characterized were first screened for their ability to complement four yeast mutants defective in Zn, Fe, Mn, or Cu uptake. Six of the Arabidopsis ZIP genes complemented a yeast Zn uptake-deficient mutant, one was able partially to complement a yeast Fe uptake-deficient mutant, six ZIP family members complemented an Mn uptake-deficient mutant, and none complemented the Cu uptake-deficient mutant. AtZIP1 and AtZIP2 were then chosen for further study, as the preliminary yeast and in planta analysis suggested they both may be root Zn and Mn transporters. In yeast, AtZIP1 and AtZIP2 both complemented the Zn and Mn uptake mutants, suggesting that they both may transport Zn and/or Mn. Expression of both genes is localized to the root stele, and AtZIP1 expression was also found in the leaf vasculature. It was also found that AtZIP1 is a vacuolar transporter, while AtZIP2 is localized to the plasma membrane. Functional studies with Arabidopsis AtZIP1 and AtZIP2 T-DNA knockout lines suggest that both transporters play a role in Mn (and possibly Zn) translocation from the root to the shoot. AtZIP1 may play a role in remobilizing Mn from the vacuole to the cytoplasm in root stellar cells, and may contribute to radial movement to the xylem parenchyma. AtZIP2, on the other hand, may mediate Mn (and possibly Zn) uptake into root stellar cells, and thus also may contribute to Mn/Zn movement in the stele to the xylem parenchyma, for subsequent xylem loading and transport to the shoot.
C1 [Milner, Matthew J.; Seamon, Jesse; Craft, Eric; Kochian, Leon V.] Cornell Univ, USDA ARS, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA.
[Milner, Matthew J.] Cornell Univ, Boyce Thompson Inst, Ithaca, NY 14853 USA.
RP Kochian, LV (reprint author), Cornell Univ, USDA ARS, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA.
EM lvk1@cornell.edu
RI Milner, Matthew/M-2430-2014
OI Kochian, Leon/0000-0003-3416-089X; Milner, Matthew/0000-0001-9184-7423
NR 28
TC 60
Z9 64
U1 13
U2 105
PU OXFORD UNIV PRESS
PI OXFORD
PA GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
SN 0022-0957
J9 J EXP BOT
JI J. Exp. Bot.
PD JAN
PY 2013
VL 64
IS 1
BP 369
EP 381
DI 10.1093/jxb/ers315
PG 13
WC Plant Sciences
SC Plant Sciences
GA 058RJ
UT WOS:000312651100027
PM 23264639
ER
PT J
AU Gusta, LV
Wisniewski, M
AF Gusta, Lawrence V.
Wisniewski, Michael
TI Understanding plant cold hardiness: an opinion
SO PHYSIOLOGIA PLANTARUM
LA English
DT Article
ID LOW-TEMPERATURE; FREEZING TOLERANCE; ICE NUCLEATION; EXTRACELLULAR ICE;
STRESS RESPONSES; WINTER-HARDINESS; SYSTEMS BIOLOGY; CIRCADIAN CLOCK;
GENE-EXPRESSION; FLOWER BUDS
AB How plants adapt to freezing temperatures and acclimate to survive the formation of ice within their tissues has been a subject of study for botanists and plant scientists since the latter part of the 19th century. In recent years, there has been an explosion of information on this topic and molecular biology has provided new and exciting opportunities to better understand the genes involved in cold adaptation, freezing response and environmental stress in general. Despite an exponential increase in our understanding of freezing tolerance, understanding cold hardiness in a manner that allows one to actually improve this trait in economically important crops has proved to be an elusive goal. This is partly because of the growing recognition of the complexity of cold adaptation. The ability of plants to adapt to and survive freezing temperatures has many facets, which are often species specific, and are the result of the response to many environmental cues, rather than just low temperature. This is perhaps underappreciated in the design of many controlled environment experiments resulting in data that reflects the response to the experimental conditions but may not reflect actual mechanisms of cold hardiness in the field. The information and opinions presented in this report are an attempt to illustrate the many facets of cold hardiness, emphasize the importance of context in conducting cold hardiness research, and pose, in our view, a few of the critical questions that still need to be addressed.
C1 [Wisniewski, Michael] ARS, USDA, Kearneysville, WV 25430 USA.
[Gusta, Lawrence V.] Univ Saskatchewan, Dept Plant Sci, Saskatoon, SK S7N 5A8, Canada.
RP Wisniewski, M (reprint author), ARS, USDA, Kearneysville, WV 25430 USA.
EM michael.wisniewski@ars.usda.gov
NR 73
TC 41
Z9 45
U1 7
U2 95
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0031-9317
J9 PHYSIOL PLANTARUM
JI Physiol. Plant.
PD JAN
PY 2013
VL 147
IS 1
SI SI
BP 4
EP 14
DI 10.1111/j.1399-3054.2012.01611.x
PG 11
WC Plant Sciences
SC Plant Sciences
GA 058RC
UT WOS:000312650300002
PM 22409670
ER
PT J
AU Schroeder, KL
Martin, FN
de Cock, AWAM
Levesque, CA
Spies, CFJ
Okubara, PA
Paulitz, TC
AF Schroeder, Kurtis L.
Martin, Frank N.
de Cock, Arthur W. A. M.
Levesque, C. Andre
Spies, Christoffel F. J.
Okubara, Patricia A.
Paulitz, Timothy C.
TI Molecular Detection and Quantification of Pythium Species: Evolving
Taxonomy, New Tools, and Challenges
SO PLANT DISEASE
LA English
DT Article
ID POLYMERASE-CHAIN-REACTION; REAL-TIME PCR; RIBOSOMAL-RNA GENE; RED ROT
DISEASE; INTERNAL TRANSCRIBED SPACER; CYTOCHROME-OXIDASE-II;
FRAGMENT-LENGTH-POLYMORPHISMS; PHYLOGENETIC-RELATIONSHIPS;
MITOCHONDRIAL-DNA; ISOZYME VARIATION
C1 [Okubara, Patricia A.] Washington State Univ, USDA ARS, Dis & Biol Control Res Unit, Pullman, WA 99164 USA.
[Levesque, C. Andre] Agr & Agri Food Canada, Cent Expt Farm, Biodivers Grp, Ottawa, ON, Canada.
[de Cock, Arthur W. A. M.] CBS KNAW Fungal Biodivers Ctr, Utrecht, Netherlands.
[Martin, Frank N.] USDA ARS, Salinas, CA USA.
[Schroeder, Kurtis L.] Washington State Univ, Dept Plant Pathol, Pullman, WA 99164 USA.
RP Paulitz, TC (reprint author), Washington State Univ, USDA ARS, Dis & Biol Control Res Unit, Pullman, WA 99164 USA.
EM paulitz@wsu.edu
OI Paulitz, Timothy/0000-0002-8885-3803
NR 189
TC 30
Z9 32
U1 4
U2 56
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 4
EP 20
DI 10.1094/PDIS-03-12-0243-FE
PG 17
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200001
ER
PT J
AU Mavrodieva, V
James, D
Williams, K
Negi, S
Varga, A
Mock, R
Levy, L
AF Mavrodieva, Vessela
James, Delano
Williams, Karen
Negi, Sarika
Varga, Aniko
Mock, Ray
Levy, Laurene
TI Molecular Analysis of a Plum pox virus W Isolate in Plum Germplasm Hand
Carried into the USA from the Ukraine Shows a Close Relationship to a
Latvian Isolate
SO PLANT DISEASE
LA English
DT Article
ID POLYMERASE-CHAIN-REACTION; NUCLEOTIDE-SEQUENCE; POTYVIRUS DETECTION;
SHARKA DISEASE; 1ST REPORT; STRAIN; RECOMBINATION; PPV; PRUNUS; RNA
AB Mavrodieva, V., James, D., Williams, K., Negi, S., Varga, A., Mock, R., and Levy, L. 2013. Molecular analysis of a Plum pox virus W isolate in plum germplasm hand carried into the USA from the Ukraine shows a close relationship to a Latvian isolate. Plant Dis. 97:44-52. Four of 19 Prunus germplasm accessions hand carried from the Ukraine into the United States without authorization were found to be infected with Plum pox virus (PPV). Of the three isolates characterized, isolates UKR 44189 and UKR 44191 were confirmed to be isolates of PPV strain W, and UKR 44188 was confirmed to be an isolate of PPV strain D. UKR 44189 and UKR 44191 are very closely related to the PPV strain W isolate LV-145bt (HQ670748) from Latvia. Nucleotide and amino acid sequence identities between these three isolates were greater than 99%. This indicates that the isolates are very closely related and likely originated from a common source. The high genetic diversity among PPV-W strain isolates allowed the identification of potential recombination events between PPV isolates. It appears also that GF 305 peach and Prunus tomentosa are not hosts for the PPV isolate UKR 44189.
C1 [Mavrodieva, Vessela; Williams, Karen; Negi, Sarika; Levy, Laurene] Anim & Plant Hlth Inspect Serv, USDA, CPHST, Beltsville Lab,BARC E, Beltsville, MD 20705 USA.
[James, Delano; Varga, Aniko] Canadian Food Inspect Agcy, Sidney Lab, Sidney, BC V8L 1H3, Canada.
[Mock, Ray] Agr Res Serv, USDA, Natl Germplasm Resources Lab, Beltsville, MD USA.
RP Mavrodieva, V (reprint author), Anim & Plant Hlth Inspect Serv, USDA, CPHST, Beltsville Lab,BARC E, Bldg 580,Powder Mill Rd, Beltsville, MD 20705 USA.
EM vessela.a.mavrodieva@aphis.usda.gov
NR 43
TC 8
Z9 11
U1 0
U2 16
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 44
EP 52
DI 10.1094/PDIS-01-12-0104-RE
PG 9
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200005
ER
PT J
AU Strausbaugh, CA
Eujayl, IA
Foote, P
AF Strausbaugh, Carl A.
Eujayl, Imad A.
Foote, Paul
TI Selection for Resistance to the Rhizoctonia-Bacterial Root Rot Complex
in Sugar Beet
SO PLANT DISEASE
LA English
DT Article
ID CROWN ROT; MICROBIAL COMMUNITIES; INTERMOUNTAIN WEST; INTEGRATED
CONTROL; STARTER CULTURES; ACID BACTERIA; SOLANI; LEUCONOSTOC;
SUSCEPTIBILITY; FERMENTATION
AB Strausbaugh, C. A., Eujayl, I. A., and Foote. P. 2013. Selection for resistance to the Rhizoctonia-bacterial root rot complex in sugar beet. Plant Dis. 97:93-100. The Rhizoctonia-bacterial root rot complex continues to be a concerning problem in sugar beet production areas. To investigate resistance to this complex in 26 commercial sugar beet cultivars, field studies and greenhouse studies with mature roots from the field were conducted with Rhizoctonia solani anastomosis group 2-2 IIIB strains and Leuconostoc mesenteroides. Based on means for the 26 cultivars in the 2010 and 2011 field studies, fungal rot tweed from 0 to 8%, bacterial rot ranged from 0 to 37%, total internal rot ranged from 0 to 44%, and surface rot ranged from 0 to 52%. All four rot variables resulted in significant (P < 0.0001) cultivar differences. Based on regression analysis, strong positive relationships (r(2) from 0.6628 to 0.9320; P < 0.0001) were present among the rot variables. When ranking cultivars, the most consistent rot variable was surface rot, because 12 of 13 variable year combinations had significant (P <= 0.05) correlations. When cultivar ranking in greenhouse assays was compared, there was frequently a positive correlation with storage data but no relationship with field results. Thus, the greenhouse assays will identify storage rot resistance but field screening will be required to find resistance to this rot complex in the field.
C1 [Strausbaugh, Carl A.; Eujayl, Imad A.] ARS, USDA, NWISRL, Kimberly, ID 83341 USA.
[Foote, Paul] Amalgamated Sugar Co, Bratislava 83301, Slovakia.
RP Strausbaugh, CA (reprint author), ARS, USDA, NWISRL, Kimberly, ID 83341 USA.
EM carl.strausbaugh@ars.usda.gov
OI Strausbaugh, Carl/0000-0001-6773-1375
FU United States Department of Agriculture CRIS project
[5368-21220-003-00D]; Amalgamated Sugar Co.; Beet Sugar Development
Foundation; Snake River Sugar beet Growers
FX These data support the objectives for the United States Department of
Agriculture CRIS project 5368-21220-003-00D. We thank the Amalgamated
Sugar Co., Beet Sugar Development Foundation, and Snake River Sugar beet
Growers for supporting our research work: and J. Reed, D. Kenney, and T.
Brown for their technical support.
NR 47
TC 6
Z9 6
U1 3
U2 32
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
EI 1943-7692
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 93
EP 100
DI 10.1094/PDIS-05-12-0511-RE
PG 8
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200011
ER
PT J
AU Liu, G
Jia, Y
McClung, A
Oard, JH
Lee, FN
Correll, JC
AF Liu, G.
Jia, Y.
McClung, A.
Oard, J. H.
Lee, F. N.
Correll, J. C.
TI Confirming QTLs and Finding Additional Loci Responsible for Resistance
to Rice Sheath Blight Disease
SO PLANT DISEASE
LA English
DT Article
ID RHIZOCTONIA-SOLANI; JAPONICA RICE; QUANTIFICATION; CULTIVARS; YIELD;
LINES; REGISTRATION; GERMPLASM; SILICON; LOSSES
AB Liu, G., Jia, Y., McClung, A., Gard, J. H., Lee, F. N., and Correll, J. C. 2013. Confirming QTLs and finding additional loci responsible for resistance to rice sheath blight disease. Plant Dis. 97:113-117. Rice sheath blight disease, caused by Rhizoctonia solani AG1-1A, is one of the most destructive rice diseases worldwide. Utilization of host resistance is the most economical and environmentally sound strategy in managing sheath blight (ShB). Ten ShB quantitative trait loci (QTLs) were previously mapped in a Lemont x Jasmine 85 recombinant inbred line (LJRIL) population using greenhouse inoculation methods at an early vegetative stage. However, confirmation of ShB-resistant QTLs under field conditions is critical for their utilization in marker-assisted selection (MAS) for improving ShB resistance in new cultivars. In the present study, we evaluated ShB resistance using 216 LIRILs under field conditions in Arkansas. Texas, and Louisiana during 2008 and 2009. We confirmed the presence of the major ShB-QTL qShB9-2 based on the field data and also identified one new ShB-QTL between markers RM221 and RM112 on chromosome 2 across all three locations. Based on the field verification of ShB evaluations, the microchamber and mist-chamber assays were simple, effective, and reliable methods to identify major ShB-QTLs like qShB9-2 in the greenhouse at early vegetative stages. The markers RM215 and RM245 were found to be closely linked to aShB9-2 in greenhouse and field assays, indicating that they will be useful for improving ShB resistance in rice breeding programs using MAS.
C1 [Jia, Y.; McClung, A.] ARS, USDA, Dale Bumpers Natl Rice Res Ctr, Stuttgart, AR 72160 USA.
[Liu, G.; Lee, F. N.] Univ Arkansas, Rice Res & Extens Ctr, D-72160 Stuttgart, Germany.
[Oard, J. H.] Louisiana State Univ, LSU AgCtr, Sch Plant Environm & Soil Sci, Baton Rouge, LA 70803 USA.
[Correll, J. C.] Univ Arkansas, Dept Plant Pathol, Fayetteville, AR 72701 USA.
RP Jia, Y (reprint author), ARS, USDA, Dale Bumpers Natl Rice Res Ctr, Stuttgart, AR 72160 USA.
EM Yulin.Jia@ars.usda.gov
FU United States Department of Agriculture-Cooperative State Research,
Education and Extension Service (USDA-CREES) National Research
Initiative Applied Plant Genomics Program [2004-35317-14867]
FX This work was supported. in part, by the United States Department of
Agriculture-Cooperative State Research, Education and Extension Service
(USDA-CREES) National Research Initiative Applied Plant Genomics
Program, entitled "RiceCAP: A coordinated research, education, and
extension project for the application of genomic discoveries to improve
rice in the United States" (USDA/CSREES grant 2004-35317-14867). We
thank M. Jia for assistance in genotyping; S. Belmar and D. Groth for
assistance in the preparation for sheath blight inoculum; and T. Beaty,
L. Simpson. and P. Roberts for assistance in field evaluation of sheath
blight disease.
NR 34
TC 11
Z9 13
U1 0
U2 22
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 113
EP 117
DI 10.1094/PDIS-05-12-0466-RE
PG 5
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200014
ER
PT J
AU Wechter, WP
Keinath, AP
McMillan, M
Smith, JP
Farnham, MW
AF Wechter, W. P.
Keinath, A. P.
McMillan, M.
Smith, J. P.
Farnham, M. W.
TI Expression of Bacterial Blight Resistance in Brassica Leafy Greens Under
Field Conditions and Inheritance of Resistance in a Brassica juncea
Source
SO PLANT DISEASE
LA English
DT Article
ID SYRINGAE PV. ALISALENSIS; PSEUDOMONAS-SYRINGAE; 1ST REPORT; BROCCOLI
RAAB; CALIFORNIA; PATHOVAR; SPOT
AB Wechter, W. P., Keinath, A. P., McMillan, M., Smith, J. P., and Farnham, M. W. 2013. Expression of bacterial blight resistance in Brassica leafy greens under field conditions and inheritance of resistance in a Brassica juncea source. Plant Dis. 97:131-137. Brassica leafy greens are one of the most economically important vegetable commodity groups grown in the southeastern United States, and more than 28,000 metric tons of these crops are harvested in the United States annually. Collard and kale (Brassica oleracea Acephala group), mustard green (B. juncea), and turnip green (B. rapa) are the most commonly planted members of the brassica leafy greens group. In the last 10 years, numerous occurrences of bacterial blight on these leafy vegetables have been reported in several states. One of the pathogens responsible for this blight is designated Pseudomonas cannabina pv. alisalensis. Two B. rapa (G30710 and 030499) and two B. juncea (PI418956 and G30988) plant introductions (PIs) that exhibited moderate to high levels of resistance to this pathogen in greenhouse studies were tested for field resistance in comparison with eight commercial cultivar representatives of turnip green, mustard green, collard, and kale. The two B. juncea Pis and one of the B. rapa PIs (G30499) were found to have significantly less disease than all tested cultivars except 'Southern Curled Giant mustard green (B. juncea) and 'Blue Knight' kale (B. oleracea). Inheritance of resistance studies performed with populations derived from the resistant G30988 and two susceptible Pis provided some evidence that resistance may be controlled by a single recessive gene.
C1 [Wechter, W. P.; McMillan, M.; Farnham, M. W.] USDA ARS, US Vegetable Lab, Charleston, SC 29414 USA.
[Keinath, A. P.] Clemson Univ, Coastal Res & Educ Ctr, Charleston, SC 29414 USA.
[Smith, J. P.] Clemson Univ, Cooperat Extens Serv, Lexington, SC 29072 USA.
RP Wechter, WP (reprint author), USDA ARS, US Vegetable Lab, Charleston, SC 29414 USA.
EM Pat.Wechter@ars.usda.gov
RI sebastianovitsch, stepan/G-8507-2013
NR 19
TC 2
Z9 2
U1 1
U2 16
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 131
EP 137
DI 10.1094/PDIS-02-12-0220-RE
PG 7
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200017
ER
PT J
AU Testen, AL
McKemy, JM
Backman, PA
AF Testen, A. L.
McKemy, J. M.
Backman, P. A.
TI First Report of Passalora Leaf Spot of Quinoa Caused by Passalora dubia
in the United States
SO PLANT DISEASE
LA English
DT News Item
ID CERCOSPORA
C1 [Testen, A. L.; Backman, P. A.] Penn State Univ, Dept Plant Pathol, University Pk, PA 16802 USA.
[McKemy, J. M.] Natl Identificat Serv, USDA, APHIS, PPQ, Beltsville, MD 20705 USA.
RP Testen, AL (reprint author), Penn State Univ, Dept Plant Pathol, University Pk, PA 16802 USA.
NR 4
TC 0
Z9 0
U1 2
U2 5
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 139
EP 139
DI 10.1094/PDIS-05-12-0472-PDN
PG 1
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200022
ER
PT J
AU Beyer, DM
O'Donnell, K
Paley, K
Wach, MP
AF Beyer, D. M.
O'Donnell, K.
Paley, K.
Wach, M. P.
TI First Report of Syzygites megalocarpus (Mucorales) Web Mold on the
Commercial Portabella Button Mushroom Agaricus bisporus in North America
SO PLANT DISEASE
LA English
DT News Item
C1 [Beyer, D. M.; Paley, K.] Penn State Univ, Dept Plant Pathol, University Pk, PA 16802 USA.
[O'Donnell, K.] ARS, Bacterial Foodborne Pathogens & Mycol Res Unit, NCAUR, USDA, Peoria, IL 61604 USA.
[Wach, M. P.] Sylvan BioSci, Kittanning, PA 16201 USA.
RP Beyer, DM (reprint author), Penn State Univ, Dept Plant Pathol, University Pk, PA 16802 USA.
NR 3
TC 0
Z9 0
U1 4
U2 18
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 142
EP 142
DI 10.1094/PDIS-07-12-0619-PDN
PG 1
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200028
ER
PT J
AU Lartey, RT
Caesar-TonThat, TC
Caesar, AJ
Sainju, UM
Evans, RG
AF Lartey, R. T.
Caesar-TonThat, T. C.
Caesar, A. J.
Sainju, U. M.
Evans, R. G.
TI First Report of Spot Form Net Blotch Caused by Pyrenophora teres f.
maculata on Barley in the Mon-Dak Area of the United States
SO PLANT DISEASE
LA English
DT News Item
C1 [Lartey, R. T.; Caesar-TonThat, T. C.; Caesar, A. J.; Sainju, U. M.; Evans, R. G.] USDA ARS, No Plains Agr Lab, Sidney, MT 59270 USA.
RP Lartey, RT (reprint author), USDA ARS, No Plains Agr Lab, 1500 N Cent Ave, Sidney, MT 59270 USA.
NR 4
TC 0
Z9 0
U1 0
U2 8
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 143
EP 144
DI 10.1094/PDIS-07-12-0657-PDN
PG 2
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200032
ER
PT J
AU Bruckart, WL
Eskandari, FM
Coombs, EM
Rossman, AY
Palm, ME
AF Bruckart, W. L., III
Eskandari, F. M.
Coombs, E. M.
Rossman, A. Y.
Palm, M. E.
TI First Report of Pilidium concavum causing Leaf Necrosis on Fallopia
japonica in the United States
SO PLANT DISEASE
LA English
DT News Item
C1 [Bruckart, W. L., III; Eskandari, F. M.] ARS, USDA, FDWSRU, Ft Detrick, MD 21702 USA.
[Coombs, E. M.] Oregon Dept Agr, Salem, OR 97301 USA.
[Rossman, A. Y.] ARS, USDA, SMML, Beltsville, MD 20705 USA.
[Palm, M. E.] USDA, APHIS, PPQ, Riverdale, MD 20737 USA.
RP Bruckart, WL (reprint author), ARS, USDA, FDWSRU, Ft Detrick, MD 21702 USA.
NR 4
TC 1
Z9 2
U1 0
U2 6
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 146
EP 146
DI 10.1094/PDIS-07-12-0688-PDN
PG 1
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200038
ER
PT J
AU Keith, LM
Matsumoto, TK
AF Keith, L. M.
Matsumoto, T. K.
TI First Report of Pestalotiopsis Leaf Blotch on Mangosteen in Hawaii
SO PLANT DISEASE
LA English
DT News Item
C1 [Keith, L. M.; Matsumoto, T. K.] USDA ARS, Trop Plant Genet Resource & Dis Res Unit, Pacific Basin Agr Res Ctr, Hilo, HI 96720 USA.
RP Keith, LM (reprint author), USDA ARS, Trop Plant Genet Resource & Dis Res Unit, Pacific Basin Agr Res Ctr, Hilo, HI 96720 USA.
NR 3
TC 0
Z9 2
U1 0
U2 2
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 146
EP 146
DI 10.1094/PDIS-07-12-0702-PDN
PG 1
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200039
ER
PT J
AU Ling, KS
Li, R
Panthee, DR
Gardner, RG
AF Ling, K. -S.
Li, R.
Panthee, D. R.
Gardner, R. G.
TI First Report of Potato spindle tuber viroid Naturally Infecting
Greenhouse Tomatoes in North Carolina
SO PLANT DISEASE
LA English
DT News Item
C1 [Ling, K. -S.; Li, R.] USDA ARS, US Vegetable Lab, Charleston, SC 29414 USA.
[Panthee, D. R.; Gardner, R. G.] N Carolina State Univ, Dept Hort Sci, Mt Hort Crops Res & Extens Ctr, Mills River, NC 28759 USA.
RP Ling, KS (reprint author), USDA ARS, US Vegetable Lab, Charleston, SC 29414 USA.
NR 4
TC 2
Z9 2
U1 1
U2 12
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 148
EP 149
DI 10.1094/PDIS-07-12-0679-PDN
PG 2
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200044
ER
PT J
AU Whitworth, JL
Crosslin, JM
AF Whitworth, J. L.
Crosslin, J. M.
TI Detection of Potato mop top virus (Furovirus) on potato in southeast
Idaho
SO PLANT DISEASE
LA English
DT News Item
ID 1ST REPORT
C1 [Whitworth, J. L.] USDA ARS, Aberdeen, ID 83210 USA.
[Crosslin, J. M.] USDA ARS, Prosser, WA 99350 USA.
RP Whitworth, JL (reprint author), USDA ARS, Aberdeen, ID 83210 USA.
NR 4
TC 9
Z9 9
U1 1
U2 15
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0191-2917
J9 PLANT DIS
JI PLANT DIS.
PD JAN
PY 2013
VL 97
IS 1
BP 149
EP 149
DI 10.1094/PDIS-08-12-0707-PDN
PG 1
WC Plant Sciences
SC Plant Sciences
GA 056VJ
UT WOS:000312519200045
ER
PT J
AU Perez-Staples, D
Shelly, TE
Yuval, B
AF Perez-Staples, Diana
Shelly, Todd E.
Yuval, Boaz
TI Female mating failure and the failure of 'mating' in sterile insect
programs
SO ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA
LA English
DT Review
DE Tephritidae; Lepidoptera; mosquitoes; weevils; leks; remating; female
choice; mass-rearing; irradiation; sperm; SIT
ID MEDITERRANEAN FRUIT-FLY; CERATITIS-CAPITATA DIPTERA; CUCURBITAE
COQUILLETT DIPTERA; IN-FIELD CAGES; ANASTREPHA-FRATERCULUS DIPTERA; MALE
REPRODUCTIVE SUCCESS; LONG-RANGE DISPERSAL; MASS-REARED STERILE;
SWEET-POTATO WEEVIL; FLIES DIPTERA
AB The sterile insect technique (SIT) involves the inundative release of irradiated (sterile or partially sterile) insects to decrease population levels in a target pest species. The effectiveness of SIT programs depends on sterile males mating successfully and inducing reproductive failure in wild females, or in the F1 generation in the case of lepidopteran species. Thus, from the perspective of insect control, female mating failure involves mating with a mass-reared, sterilized male, which then results in female reproductive failure. Here, we review female mating failure in the context of SIT at two stages. First, at the pre-copulatory stage we consider factors that affect female mating failure with sterile males, such as differences between sterile and wild males in terms of male courtship success, male discrimination of females, pheromone production, and dispersal. We emphasize studies with some degree of ecological realism and review certain factors that can affect female sexual development and choice, such as diet, age, and sex ratio. Second, at the post-copulatory stage we consider factors that functionally result in female reproductive failure, such as ejaculate transfer and control of female remating. Sterile insect technique operations strive to incorporate methods that increase wild female mating with sterile males so that ultimately population-wide reproductive failure is achieved in the target species.
C1 [Perez-Staples, Diana] Univ Veracruzana, INBIOTECA, Xalapa 91090, Veracruz, Mexico.
[Shelly, Todd E.] USDA APHIS, Waimanalo, HI 96795 USA.
[Yuval, Boaz] Hebrew Univ Jerusalem, Dept Entomol, IL-76100 Rehovot, Israel.
RP Perez-Staples, D (reprint author), Univ Veracruzana, INBIOTECA, Av Culturas Veracruzanas 101, Xalapa 91090, Veracruz, Mexico.
EM diperez@uv.mx
RI Perez-Staples, Diana/C-1417-2011
OI Perez-Staples, Diana/0000-0002-6804-0346
NR 134
TC 10
Z9 10
U1 9
U2 88
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0013-8703
J9 ENTOMOL EXP APPL
JI Entomol. Exp. Appl.
PD JAN
PY 2013
VL 146
IS 1
SI SI
BP 66
EP 78
DI 10.1111/j.1570-7458.2012.01312.x
PG 13
WC Entomology
SC Entomology
GA 052TY
UT WOS:000312222600007
ER
PT J
AU Tobin, PC
Onufrieva, KS
Thorpe, KW
AF Tobin, Patrick C.
Onufrieva, Ksenia S.
Thorpe, Kevin W.
TI The relationship between male moth density and female mating success in
invading populations of Lymantria dispar
SO ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA
LA English
DT Article
DE Allee effect; biological invasions; invasive species; mating behavior;
Lepidoptera; Lymantriidae; founder population; density
ID PHEROMONE-BAITED TRAPS; GYPSY-MOTH; BIOLOGICAL INVASIONS; RACEMIC
DISPARLURE; PROPAGULE PRESSURE; GROUND APPLICATION; UNITED-STATES;
LEPIDOPTERA; DISRUPTION; ERADICATION
AB The successful establishment of non-native species in new areas can be affected by many factors including the initial size of the founder population. Populations comprised of fewer individuals tend to be subject to stochastic forces and Allee effects (positive-density dependence), which can challenge the ability of small founder populations to establish in a new area. Although the conceptual relationship between initial colony size and establishment success has been previously documented, it is not trivial to estimate precisely the colony size needed to ensure colony persistence. Over the last 40 years, there have been many studies on the probability of mating success of female Lymantria dispar (L.) (Lepidoptera: Lymantriidae) in the USA related to background male moth densities. We were motivated by this wealth of data and sought to combine the results from these prior studies with the goal of estimating a robust measure of the male moth density required to achieve varying levels of female mating success. Although the data are specific to L. dispar, the pheromone communication system in L. dispar is not unique and thus the results of this analysis could be broadly applicable to our general understanding of Lepidoptera mating behavior.
C1 [Tobin, Patrick C.] US Forest Serv, No Res Stn, USDA, Morgantown, WV 26505 USA.
[Onufrieva, Ksenia S.] Virginia Tech, Dept Entomol, Blacksburg, VA 24061 USA.
[Thorpe, Kevin W.] ARS, USDA, Beltsville, MD 20705 USA.
RP Tobin, PC (reprint author), US Forest Serv, No Res Stn, USDA, 180 Canfield St, Morgantown, WV 26505 USA.
EM ptobin@fs.fed.us
RI Onufrieva, Ksenia/A-4609-2008
OI Onufrieva, Ksenia/0000-0002-8424-850X
FU gypsy moth agency
FX We thank the Gypsy Moth Mating Disruption Working Group for thoughtful
discussions and support for much of the research conducted that enabled
this analysis. We also would like to thank the countless number of field
workers, industry representatives, collaborating scientists, and gypsy
moth research funding agencies that also made this analysis possible.
NR 67
TC 8
Z9 8
U1 5
U2 48
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0013-8703
EI 1570-7458
J9 ENTOMOL EXP APPL
JI Entomol. Exp. Appl.
PD JAN
PY 2013
VL 146
IS 1
SI SI
BP 103
EP 111
DI 10.1111/j.1570-7458.2012.01299.x
PG 9
WC Entomology
SC Entomology
GA 052TY
UT WOS:000312222600010
ER
PT J
AU Lu, SW
Edwards, MC
Friesen, TL
AF Lu, Shunwen
Edwards, Michael C.
Friesen, Timothy L.
TI Genetic variation of single nucleotide polymorphisms identified at the
mating type locus correlates with form-specific disease phenotype in the
barley net blotch fungus Pyrenophora teres
SO EUROPEAN JOURNAL OF PLANT PATHOLOGY
LA English
DT Article
DE SNP genotyping; Molecular diagnostics; Disease management
ID F MACULATA; TRITICI-REPENTIS; CAUSAL AGENT; MAJOR GENES; MARKERS; SPOT;
POPULATIONS; RESISTANCE; PATHOGEN; GENOME
AB Mating-type (MAT) locus-specific single nucleotide polymorphisms (SNPs) have been shown to be sufficient for conventional PCR-based differentiation of Pyrenophora teres f. teres (Ptt) and P. teres f. maculata (Ptm), the cause of the net and spot form, respectively, of barley net blotch. Here, we report the cloning and characterization of the MAT locus from 10 California isolates that cause atypical blotch symptoms on barley. Analysis of the full-length nucleotide sequences of one MAT1-1 (1,993 bp) and nine MAT1-2 (2,149 or 2,161 bp) idiomorphs revealed high (98-99 %) similarity to those of Ptt isolates. However, distinct SNP patterns were identified in the newly cloned MAT idiomorphs. Two new MAT1-2-specific SNPs were found to be conserved in one Australia and eight California isolates that all cause similar atypical blotch symptoms. Phylogenetic analysis indicated that all 10 California isolates form a separate branch (or clade) within the Ptt group, except for one that appears to be ancestral to both Ptt and Ptm. PCR primers designed based on the identified SNP patterns were used successfully to differentiate each atypical isolate from highly virulent forms. This study extends our previous work and, taken together, the results demonstrate that the genetic variation at the MAT locus correlates with variation in the form-specific disease phenotype, and that MAT-specific SNPs can serve as reliable and convenient markers for subspecies level differentiation in P. teres, an economically important plant-pathogenic ascomycete (http://en.wikipedia.org/wiki/Single_nucleotide_polymorphism).
C1 [Lu, Shunwen; Edwards, Michael C.; Friesen, Timothy L.] USDA ARS, Cereal Crops Res Unit, No Crop Sci Lab, Fargo, ND 58102 USA.
RP Lu, SW (reprint author), USDA ARS, Cereal Crops Res Unit, No Crop Sci Lab, Fargo, ND 58102 USA.
EM Shunwen.Lu@ars.usda.gov
FU USDA-ARS CRIS projects [5442-21000-033-00D, 5442-22000-043-00D];
NIFA-AFRI Coordinated Agricultural Project (CAP) [2011-68002-30029]
FX We thank Kelsey Dunnell and Danielle Holmes for technical assistance.
This study was supported by USDA-ARS CRIS projects 5442-21000-033-00D
and 5442-22000-043-00D and the NIFA-AFRI Coordinated Agricultural
Project (CAP) Competitive Grant no. 2011-68002-30029.
NR 36
TC 0
Z9 1
U1 1
U2 30
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0929-1873
J9 EUR J PLANT PATHOL
JI Eur. J. Plant Pathol.
PD JAN
PY 2013
VL 135
IS 1
BP 49
EP 65
DI 10.1007/s10658-012-0064-8
PG 17
WC Agronomy; Plant Sciences; Horticulture
SC Agriculture; Plant Sciences
GA 055HM
UT WOS:000312406200006
ER
PT J
AU Shi, XY
Bi, JL
Morse, JG
Toscano, NC
Cooksey, DA
AF Shi, Xiangyang
Bi, Jianlong
Morse, Joseph G.
Toscano, Nick C.
Cooksey, Donald A.
TI Effect of xylem fluid from susceptible and resistant grapevines on
developmental biology of Xylella fastidiosa
SO EUROPEAN JOURNAL OF PLANT PATHOLOGY
LA English
DT Article
DE Xylella fastidiosa; Xylem fluid; V. vinifera; V. smalliana; Virulence
regulatory pathways
ID PIERCES DISEASE BACTERIUM; REGULATORY PATHWAYS; BIOFILM FORMATION;
GENES; AGGREGATION; VIRULENCE; CITRUS; SAP; EXPRESSION; CHEMISTRY
AB Xylella fastidiosa causes Pierce's disease (PD), a serious disease in grapevines, and grapevine cultivars vary in susceptibility to X. fastidiosa in the field. The mechanism(s) by which this occurs has not been clearly elucidated. To explore possible mechanisms, X. fastidiosa cells from a PD strain were grown in pure xylem fluid of PD-susceptible grapevines, Vitis vinifera and V. labrusca, versus PD-resistant grapevines, V. champinii and V. smalliana. When grown in xylem fluid from the susceptible species, X. fastidiosa cells formed a heavier biofilm compared to those in xylem fluid from the resistant species. Differential expression of selected genes of X. fastidiosa cultured in the xylem fluids of V. vinifera and V. smalliana was analyzed using a DNA macroarray. Compared with xylem fluid of V. smalliana, xylem fluid of V. vinifera stimulated the expression of X. fastidiosa genes involved in virulence regulation, such as rpfC, gacA, xrvA, gcvR, and cysB, and genes involved in biogenesis of pili and twitching motility, such as pilI, pilU, pilE and pilG. Increased expression of virulence genes likely contributes to the expression of PD symptom in the susceptible grapevines, whereas reduced expression of these genes may lead to limitation of symptoms in resistant grapevines.
C1 [Shi, Xiangyang; Cooksey, Donald A.] Univ Calif Riverside, Dept Plant Pathol & Microbiol, Riverside, CA 92521 USA.
[Bi, Jianlong] Univ Calif Cooperat Extens, Salinas, CA 93901 USA.
[Morse, Joseph G.; Toscano, Nick C.] Univ Calif Riverside, Dept Entomol, Riverside, CA 92521 USA.
RP Shi, XY (reprint author), ARS, USDA, Crop Dis Pests & Genet Res Unit, San Joaquin Valley Agr Sci Ctr, 9611 S Riverbend Ave, Parlier, CA 93648 USA.
EM shixy2100@yahoo.com
FU University of California's Pierce's Disease Research Grants Program via
USDA CSREES; California Department of Food and Agriculture Pierce's
Disease/Glassy-winged Sharpshooter Board; University of California
Agricultural Experiment Station
FX We thank Jiue-in Yang for collecting the xylem fluids. This work was
supported in part by the University of California's Pierce's Disease
Research Grants Program via a grant from USDA CSREES, the California
Department of Food and Agriculture Pierce's Disease/Glassy-winged
Sharpshooter Board, and the University of California Agricultural
Experiment Station.
NR 33
TC 5
Z9 5
U1 0
U2 26
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0929-1873
J9 EUR J PLANT PATHOL
JI Eur. J. Plant Pathol.
PD JAN
PY 2013
VL 135
IS 1
BP 127
EP 135
DI 10.1007/s10658-012-0071-9
PG 9
WC Agronomy; Plant Sciences; Horticulture
SC Agriculture; Plant Sciences
GA 055HM
UT WOS:000312406200012
ER
PT J
AU Kane, VR
Lutz, JA
Roberts, SL
Smith, DF
McGaughey, RJ
Povak, NA
Brooks, ML
AF Kane, Van R.
Lutz, James A.
Roberts, Susan L.
Smith, Douglas F.
McGaughey, Robert J.
Povak, Nicholas A.
Brooks, Matthew L.
TI Landscape-scale effects of fire severity on mixed-conifer and red fir
forest structure in Yosemite National Park
SO FOREST ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Fire severity; Forest structure; Relativized differenced Normalized Burn
Ratio (RdNBR); LiDAR; Gaps; Yosemite
ID NEVADA WILDERNESS AREAS; AIRBORNE SCANNING LASER; CANOPY FUEL
PARAMETERS; SIERRA-NEVADA; LIDAR DATA; PACIFIC-NORTHWEST; RADIATION
BALANCE; SPATIAL-PATTERNS; WILDLAND FIRES; CLIMATE-CHANGE
AB While fire shapes the structure of forests and acts as a keystone process, the details of how fire modifies forest structure have been difficult to evaluate because of the complexity of interactions between fires and forests. We studied this relationship across 69.2 km(2) of Yosemite National Park, USA, that was subject to 32 fires >= 40 ha between 1984 and 2010. Forests types included ponderosa pine (Pious ponderosa), white fir-sugar pine (Abies concolor/Pinus lambertiana), and red fir (Abies magnifica). We estimated and stratified burned area by fire severity using the Landsat-derived Relativized differenced Normalized Burn Ratio (RdNBR). Airborne LiDAR data, acquired in July 2010, measured the vertical and horizontal structure of canopy material and landscape patterning of canopy patches and gaps. Increasing fire severity changed structure at the scale of fire severity patches, the arrangement of canopy patches and gaps within fire severity patches, and vertically within tree clumps. Each forest type showed an individual trajectory of structural change with increasing fire severity. As a result, the relationship between estimates of fire severity such as RdNBR and actual changes appears to vary among forest types. We found three arrangements of canopy patches and gaps associated with different fire severities: canopy-gap arrangements in which gaps were enclosed in otherwise continuous canopy (typically unburned and low fire severities); patch-gap arrangements in which tree clumps and gaps alternated and neither dominated (typically moderate fire severity); and open-patch arrangements in which trees were scattered across open areas (typically high fire severity).
Compared to stands outside fire perimeters, increasing fire severity generally resulted first in loss of canopy cover in lower height strata and increased number and size of gaps, then in loss of canopy cover in higher height strata, and eventually the transition to open areas with few or no trees. However, the estimated fire severities at which these transitions occurred differed for each forest type. Our work suggests that low severity fire in red fir forests and moderate severity fire in ponderosa pine and white fir-sugar pine forests would restore vertical and horizontal canopy structures believed to have been common prior to the start of widespread fire suppression in the early 1900s. The fusion of LiDAR and Landsat data identified post-fire structural conditions that would not be identified by Landsat alone, suggesting a broad applicability of combining Landsat and LiDAR data for landscape-scale structural analysis for fire management. (c) 2012 Elsevier B.V. All rights reserved.
C1 [Kane, Van R.] Univ Washington, Sch Environm & Forest Sci, Seattle, WA 98195 USA.
[Lutz, James A.] Univ Washington, Coll Environm, Seattle, WA 98195 USA.
[Roberts, Susan L.; Brooks, Matthew L.] US Geol Survey, Western Ecol Res Ctr, Yosemite Field Stn, El Portal, CA 95318 USA.
[Smith, Douglas F.] Yosemite Natl Park, Yosemite, CA 95389 USA.
[McGaughey, Robert J.] Univ Washington, USDA, US Forest Serv, Pacific NW Res Stn, Seattle, WA 98195 USA.
[Povak, Nicholas A.] USDA, US Forest Serv, Pacific NW Res Stn, Wenatchee Forestry Sci Lab, Wenatchee, WA 98801 USA.
RP Kane, VR (reprint author), Univ Washington, Sch Environm & Forest Sci, Box 352100, Seattle, WA 98195 USA.
EM vkane@uw.edu
RI Lutz, James/B-3785-2012
FU National Park Service, Fire and Aviation Management Branch, Fuels and
Ecology Program [F8803100015]; U.S. Geological Survey Terrestrial,
Freshwater, and Marine Ecosystems Program
FX C.A. Cansler (University of Washington), M. North (US Forest Service
Pacific Southwest Research Station), N. Stephenson (US Geological
Survey), J.W. van Wagtendonk (US Geological Survey, Retired) and two
anonymous reviewers provided valuable comments that improved the paper.
We thank Yosemite National Park for data and assistance with field
logistics. Funding was provided by the National Park Service, Fire and
Aviation Management Branch, Fuels and Ecology Program (Interagency
Agreement F8803100015) and the U.S. Geological Survey Terrestrial,
Freshwater, and Marine Ecosystems Program. Any use of trade, product, or
firm names is for descriptive purposes only and does not imply
endorsement by the US Government.
NR 90
TC 36
Z9 37
U1 5
U2 84
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1127
J9 FOREST ECOL MANAG
JI For. Ecol. Manage.
PD JAN 1
PY 2013
VL 287
BP 17
EP 31
DI 10.1016/j.foreco.2012.08.044
PG 15
WC Forestry
SC Forestry
GA 054OK
UT WOS:000312352900003
ER
PT J
AU Hummel, S
Kennedy, M
Steel, EA
AF Hummel, Susan
Kennedy, Maureen
Steel, E. Ashley
TI Assessing forest vegetation and fire simulation model performance after
the Cold Springs wildfire, Washington USA
SO FOREST ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Forest structure; Forest Vegetation Simulator (FVS) and FFE-FVS;
Multi-criteria assessment; Pareto optimality; Fire behavior and effects
ID ECOLOGICAL PROCESS MODELS; MULTICRITERIA ASSESSMENT; UNCERTAINTY;
MANAGEMENT; SEVERITY; BEHAVIOR; IMPACTS; LESSONS; SYSTEMS; OREGON
AB Given that resource managers rely on computer simulation models when it is difficult or expensive to obtain vital information directly, it is important to evaluate how well a particular model satisfies applications for which it is designed. The Forest Vegetation Simulator (FVS) is used widely for forest management in the US, and its scope and complexity continue to increase. This paper focuses on the accuracy of estimates made by the Fire and Fuels Extension (FFE-FVS) predictions through comparisons between model outputs and measured post-fire conditions for the Cold Springs wildfire and on the sensitivity of model outputs to weather, disease, and fuel inputs. For each set of projected, pre-fire stand conditions, a fire was simulated that approximated the actual conditions of the Cold Springs wildfire as recorded by local portable weather stations. We also simulated a fire using model default values. From the simulated post-fire conditions, values of tree mortality and fuel loads were obtained for comparison to post-fire, observed values. We designed eight scenarios to evaluate how model output changed with varying input values for three parameter sets of interest: fire weather, disease, and fuels. All of the tested model outputs displayed some sensitivity to alternative model inputs. Our results indicate that tree mortality and fuels were most sensitive to whether actual or default weather was used and least sensitive to whether or not disease data were included as model inputs. The performance of FFE-FVS for estimating total surface fuels was better for the scenarios using actual weather data than for the scenarios using default weather data. It was rare that the model could predict fine fuels or litter. Our results suggest that using site-specific information over model default values could significantly improve the accuracy of simulated values. Published by Elsevier B.V.
C1 [Hummel, Susan] USDA, Portland Forestry Sci Lab, US Forest Serv, PNW Res Stn, Portland, OR 97205 USA.
[Kennedy, Maureen] Univ Washington, Seattle, WA 98195 USA.
[Steel, E. Ashley] USDA, US Forest Serv, PNW Res Stn, Seattle, WA USA.
RP Hummel, S (reprint author), USDA, Portland Forestry Sci Lab, US Forest Serv, PNW Res Stn, 620 SW Main St,Suite 400, Portland, OR 97205 USA.
EM shummel@fs.fed.us
OI Steel, E. Ashley/0000-0001-5091-276X
NR 52
TC 3
Z9 3
U1 1
U2 21
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1127
J9 FOREST ECOL MANAG
JI For. Ecol. Manage.
PD JAN 1
PY 2013
VL 287
BP 40
EP 52
DI 10.1016/j.foreco.2012.08.031
PG 13
WC Forestry
SC Forestry
GA 054OK
UT WOS:000312352900005
ER
PT J
AU Crotteau, JS
Varner, JM
Ritchie, MW
AF Crotteau, Justin S.
Varner, J. Morgan, III
Ritchie, Martin W.
TI Post-fire regeneration across a fire severity gradient in the southern
Cascades
SO FOREST ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Regeneration; Seedlings; Vegetation dynamics; Lassen National Forest;
Storrie Fire
ID MIXED-CONIFER FOREST; INTERMEDIATE DISTURBANCE HYPOTHESIS;
YELLOWSTONE-NATIONAL-PARK; NORTHERN SIERRA-NEVADA; LAKE TAHOE BASIN;
TREE REGENERATION; CALIFORNIA; WILDFIRE; USA; PATTERN
AB Large scale, high-severity fires are increasing in the western United States. Despite this trend, there have been few studies investigating post-fire tree regeneration. We established a study in the footprint of the 2000 Storrie Fire, a 23,000 ha wildfire that occurred in northern California, USA. We used a stratified sampling design to quantify post-fire vegetation dynamics across four levels of burn severity and three forest types on the Lassen National Forest nine and ten years following fire. Within each sampled stand, we recorded tree seedlings, forest overstory, shrub cover, and abiotic factors hypothesized to influence growth and establishment.
Median conifer seedling densities varied substantially by burn severity: 1918 seedlings ha(-1) in the Unchanged units; 4838 seedlings ha(-1) in the Low-severity units; 6484 seedlings ha(-1) in the Medium-severity units; and 710 seedlings ha(-1) in the High-severity units. Increased burn severity was associated with greater shrub coverage: shrub cover in High-severity burns was more than three times those of lower burn severities. We calculated Shannon's Species Diversity (H') and Pielou's Evenness (E-H) indices to examine woody shrub and tree diversity. Abies spp. were by far the most abundant regenerating conifer species, which may be a concern for land managers; shrub cover after High-severity burns was dominated by Ceanothus spp. Although fir regeneration was prolific, the Storrie Fire generated diverse vegetative responses, potentially aiding in the reintroduction of the diverse landscape mosaic homogenized by a century of landscape-scale fire exclusion. (c) 2012 Elsevier B.V. All rights reserved.
C1 [Crotteau, Justin S.; Varner, J. Morgan, III; Ritchie, Martin W.] US Forest Serv, USDA, Pacific SW Res Stn, Redding, CA 96002 USA.
[Crotteau, Justin S.] Humboldt State Univ, Dept Forestry & Wildland Resources, Arcata, CA 95521 USA.
RP Crotteau, JS (reprint author), US Forest Serv, USDA, Pacific SW Res Stn, 3644 Avtech Pkwy, Redding, CA 96002 USA.
EM jscrotteau@fs.fed.gov
FU Lassen National Forest, Almanor Ranger District
FX Support for this paper was provided by the Lassen National Forest,
Almanor Ranger District. Data collection was performed by USDA
PSW-Redding's Vegetation Dynamics team. C. Edgar, P. Berrill, and two
anonymous reviewers provided thoughtful comments in the formulation of
the final manuscript.
NR 55
TC 30
Z9 32
U1 5
U2 82
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1127
J9 FOREST ECOL MANAG
JI For. Ecol. Manage.
PD JAN 1
PY 2013
VL 287
BP 103
EP 112
DI 10.1016/j.foreco.2012.09.022
PG 10
WC Forestry
SC Forestry
GA 054OK
UT WOS:000312352900010
ER
PT J
AU Ritchie, MW
Knapp, EE
Skinner, CN
AF Ritchie, Martin W.
Knapp, Eric E.
Skinner, Carl N.
TI Snag longevity and surface fuel accumulation following post-fire logging
in a ponderosa pine dominated forest
SO FOREST ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Coarse woody debris; Snag dynamics; Salvage logging
ID MIXED-CONIFER FOREST; SIERRA-NEVADA; CASCADE MOUNTAINS; PRESCRIBED FIRE;
BOREAL FOREST; WILDFIRE; CALIFORNIA; DYNAMICS; SALVAGE; REGENERATION
AB In a study of post-fire logging effects over an 8 year period at Blacks Mountain Experimental Forest, salvage logging was conducted at varying levels of intensity after a 2002 wildfire event. In a designed experiment, harvest prescriptions with snag retention levels ranging from 0% to 100% in 15 experimental units were installed. Observations of standing snags and surface fuels were made 2, 4, 6, and 8 years after the fire. Fire-killed snags fell rapidly over time, leading to elevated surface fuel levels in areas where no salvage logging was done. The 1000 h and larger surface fuels were strongly related with basal area retention level, with values ranging from 0-60 Mg ha(-1) by year eight. However, when expressed as a percent of standing retained biomass, surface fuel accumulation was not related to treatment. In year 8, surface fuel was 81% of retained bole biomass. The retention of snags after this wildfire event provided snags for wildlife foraging and nesting habitat, however most of these snags were lost within 8 years after the fire. White fir snags were more stable than pine and appeared to be used with greater frequency than pine for cavity excavation. Published by Elsevier B.V.
C1 [Ritchie, Martin W.; Knapp, Eric E.; Skinner, Carl N.] US Forest Serv, USDA, Pacific SW Res Stn, Redding, CA 96002 USA.
RP Ritchie, MW (reprint author), US Forest Serv, USDA, Pacific SW Res Stn, 3644 Avtech Pkwy, Redding, CA 96002 USA.
EM mritchie@fs.fed.us; eknapp@fs.fed.us; cskinner@fs.fed.us
FU Joint Fire Science Program [07-2-2-09]
FX This project was funded by the Joint Fire Science Program (07-2-2-09).
We are indebted to the personnel of the Eagle Lake Ranger District,
Lassen National Forest, for help in establishing the project and
conducting the necessary planning analysis, as well as the work of Todd
Hamilton, Brian Wing, and Travis Springer in establishing and
maintaining the study plots.
NR 41
TC 13
Z9 13
U1 4
U2 44
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1127
J9 FOREST ECOL MANAG
JI For. Ecol. Manage.
PD JAN 1
PY 2013
VL 287
BP 113
EP 122
DI 10.1016/j.foreco.2012.09.001
PG 10
WC Forestry
SC Forestry
GA 054OK
UT WOS:000312352900011
ER
PT J
AU Mulvey, RL
Shaw, DC
Maguire, DA
AF Mulvey, Robin L.
Shaw, David C.
Maguire, Douglas A.
TI Fertilization impacts on Swiss needle cast disease severity in western
Oregon
SO FOREST ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Swiss needle cast; Douglas-fir; Phaeocryptopus gaeumannii; Fertilization
ID DOUGLAS-FIR PLANTATIONS; PHAEOCRYPTOPUS-GAEUMANNII; FOREST
FERTILIZATION; PACIFIC-NORTHWEST; COASTAL OREGON; UNITED-STATES; GROWTH;
AVAILABILITY; ASSIMILATION; RESPONSES
AB The influence of fertilization on disease severity is unknown in most forest pathosystems. Fertilization treatments were randomly applied to 0.01 ha plots centered on individual dominant or co-dominant Douglas-fir trees in ten Douglas-fir stands from coastal Oregon to the foothills of the Oregon Cascade Range, USA. This region is affected by Swiss needle cast, caused by the fungal pathogen Phaeocryptopus gaeumannii. Selected stands represented a range of Swiss needle cast disease severity, and 10 replications of each fertilization treatment were applied in each stand. The six treatments included nitrogen (urea), calcium as lime (calcium carbonate), calcium as calcium chloride, phosphorus (monosodium phosphate), a site-specific blend (Kinsey) and an unfertilized control. Fertilization took place from February-April 2007, and single branches were collected from treated trees for disease severity assessment of foliage in May 2010. Disease severity of 1- and 2-year-old needles was evaluated by counting the frequency of infected needles and the density of P. gaeumannii fruiting bodies (pseudothecia) on a random subset of needles from each tree and needle age class. Fertilization treatment effects on infection index (mean fruiting body density) were tested by mixed-effects models that accounted for site as a blocking factor. Treatment effects on infection index at each of the study locations were also tested by ten separate ANO-VAs. Across and within sites, fertilization treatment did not significantly affect infection index of 1- or 2-year old needles (p > 0.05). Small differences in mean fruiting body density (<= 3%) between fertilization and control treatments across sites were not statistically significant, nor are they believed to be biologically or economically significant. Decisions regarding fertilization should be based on site-specific attributes, such as soil chemistry. There is no evidence that fertilization directly ameliorates or exacerbates Swiss needle cast severity in western Oregon. Published by Elsevier B.V.
C1 [Mulvey, Robin L.; Shaw, David C.; Maguire, Douglas A.] Oregon State Univ, Dept Forest Engn Resources & Management, Coll Forestry, Corvallis, OR 97331 USA.
RP Mulvey, RL (reprint author), US Forest Serv, USDA, Region 10,11305 Glacier Hwy, Juneau, AK 99801 USA.
EM rlmulvey@fs.fed.us
FU Swiss Needle Cast Cooperative, based in the College of Forestry at
Oregon State University
FX Funding for this research was provided by the Swiss Needle Cast
Cooperative, based in the College of Forestry at Oregon State
University. Douglas Mainwaring was integral to the planning and
implementation of the "Beyond N" study, of which this study was a part.
David Farkac climbed trees, collecting foliage for nutrient and disease
severity assessment. Disease severity assessments were primarily
conducted by Alexis Danley, Andrew Luoma and Alex Martin.
NR 37
TC 3
Z9 3
U1 7
U2 25
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1127
J9 FOREST ECOL MANAG
JI For. Ecol. Manage.
PD JAN 1
PY 2013
VL 287
BP 147
EP 158
DI 10.1016/j.foreco.2012.08.050
PG 12
WC Forestry
SC Forestry
GA 054OK
UT WOS:000312352900015
ER
PT J
AU van Kessel, C
Venterea, R
Six, J
Adviento-Borbe, MA
Linquist, B
van Groenigen, KJ
AF van Kessel, Chris
Venterea, Rodney
Six, Johan
Adviento-Borbe, Maria Arlene
Linquist, Bruce
van Groenigen, Kees Jan
TI Climate, duration, and N placement determine N2O emissions in reduced
tillage systems: a meta-analysis
SO GLOBAL CHANGE BIOLOGY
LA English
DT Review
DE conservation tillage; mitigation; N-fertilizer; nitrous oxide;
yield-scaled
ID NITROUS-OXIDE EMISSIONS; GREENHOUSE-GAS EMISSIONS; IRRIGATED CROPPING
SYSTEMS; LOAMY SAND SOIL; CARBON-DIOXIDE; LONG-TERM; MANAGEMENT IMPACTS;
ORGANIC-CARBON; FERTILIZER MANAGEMENT; SOUTHWESTERN QUEBEC
AB No-tillage and reduced tillage (NT/RT) management practices are being promoted in agroecosystems to reduce erosion, sequester additional soil C and reduce production costs. The impact of NT/RT on N2O emissions, however, has been variable with both increases and decreases in emissions reported. Herein, we quantitatively synthesize studies on the short- and long-term impact of NT/RT on N2O emissions in humid and dry climatic zones with emissions expressed on both an area- and crop yield-scaled basis. A meta-analysis was conducted on 239 direct comparisons between conventional tillage (CT) and NT/RT. In contrast to earlier studies, averaged across all comparisons, NT/RT did not alter N2O emissions compared with CT. However, NT/RT significantly reduced N2O emissions in experiments >10 years, especially in dry climates. No significant correlation was found between soil texture and the effect of NT/RT on N2O emissions. When fertilizer-N was placed at =5 cm depth, NT/RT significantly reduced area-scaled N2O emissions, in particular under humid climatic conditions. Compared to CT under dry climatic conditions, yield-scaled N2O increased significantly (57%) when NT/RT was implemented <10 years, but decreased significantly (27%) after =10 years of NT/RT. There was a significant decrease in yield-scaled N2O emissions in humid climates when fertilizer-N was placed at =5 cm depth. Therefore, in humid climates, deep placement of fertilizer-N is recommended when implementing NT/RT. In addition, NT/RT practices need to be sustained for a prolonged time, particularly in dry climates, to become an effective mitigation strategy for reducing N2O emissions.
C1 [van Kessel, Chris; Six, Johan; Adviento-Borbe, Maria Arlene; Linquist, Bruce] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[Venterea, Rodney] ARS, USDA, Soil & Water Management Res Unit, St Paul, MN 55108 USA.
[van Groenigen, Kees Jan] No Arizona Univ, Dept Biol Sci, Flagstaff, AZ 86011 USA.
[van Groenigen, Kees Jan] No Arizona Univ, Merriam Powell Ctr Environm Res, Flagstaff, AZ 86011 USA.
RP van Kessel, C (reprint author), Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
EM cvankessel@ucdavis.edu
RI Venterea, Rodney/A-3930-2009;
OI van groenigen, kees jan/0000-0002-9165-3925
FU Irish Research Council for Science, Engineering and Technology; Marie
Curie Actions under FP7
FX We thank the following persons who provided additional data not yet
published or not reported elsewhere: Laura Alakuku, Mohamed Abdalla,
Juan Jose Pena Cabriales, Craig Drury, Ardell Halvorson, Hadar Heler,
Reynald Lemke, Sukhdev Malhi, Timothy Parkin, Phillipe Rochette, Douglas
Smith, Tony Vyn, ZhishengYoa, and Claudia Wagner-Riddle. We much
appreciate the contribution of Juhwan Lee on providing the climate
classification index. Kees Jan van Groenigen was supported by a grant
from the Irish Research Council for Science, Engineering and Technology,
co-funded by Marie Curie Actions under FP7.
NR 106
TC 73
Z9 75
U1 16
U2 300
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1354-1013
J9 GLOBAL CHANGE BIOL
JI Glob. Change Biol.
PD JAN
PY 2013
VL 19
IS 1
BP 33
EP 44
DI 10.1111/j.1365-2486.2012.02779.x
PG 12
WC Biodiversity Conservation; Ecology; Environmental Sciences
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA 051VE
UT WOS:000312155100004
PM 23504719
ER
PT J
AU Dobrowski, SZ
Abatzoglou, J
Swanson, AK
Greenberg, JA
Mynsberge, AR
Holden, ZA
Schwartz, MK
AF Dobrowski, Solomon Z.
Abatzoglou, John
Swanson, Alan K.
Greenberg, Jonathan A.
Mynsberge, Alison R.
Holden, Zachary A.
Schwartz, Michael K.
TI The climate velocity of the contiguous United States during the 20th
century
SO GLOBAL CHANGE BIOLOGY
LA English
DT Article
DE climate change velocity; climate velocity vectors; climate change
impacts; climatic water balance
ID PLANT-SPECIES RICHNESS; RANGE SHIFTS; VEGETATION DISTRIBUTION; SAPLING
MORTALITY; LATE QUATERNARY; WATER-BALANCE; RESPONSES; GROWTH; FOREST;
PRECIPITATION
AB Rapid climate change has the potential to affect economic, social, and biological systems. A concern for species conservation is whether or not the rate of on-going climate change will exceed the rate at which species can adapt or move to suitable environments. Here we assess the climate velocity (both climate displacement rate and direction) for minimum temperature, actual evapotranspiration, and climatic water deficit (deficit) over the contiguous US during the 20th century (19162005). Vectors for these variables demonstrate a complex mosaic of patterns that vary spatially and temporally and are dependent on the spatial resolution of input climate data. Velocities for variables that characterize the climatic water balance were similar in magnitude to that derived from temperature, but frequently differed in direction resulting in the divergence of climate vectors through time. Our results strain expectations of poleward and upslope migration over the past century due to warming. Instead, they suggest that a more full understanding of changes in multiple climatic factors, in addition to temperature, may help explain unexpected or conflicting observational evidence of climate-driven species range shifts during the 20th century.
C1 [Dobrowski, Solomon Z.; Swanson, Alan K.; Mynsberge, Alison R.] Univ Montana, Coll Forestry & Conservat, Dept Forest Management, Missoula, MT 59812 USA.
[Abatzoglou, John] Univ Idaho, Dept Geog, Moscow, ID 83844 USA.
[Greenberg, Jonathan A.] Univ Illinois, Dept Geog, Urbana, IL 61801 USA.
[Holden, Zachary A.] US Forest Serv Reg 1, Missoula, MT 59807 USA.
[Schwartz, Michael K.] US Forest Serv, Rocky Mt Res Stn, Missoula, MT 59801 USA.
RP Dobrowski, SZ (reprint author), Univ Montana, Coll Forestry & Conservat, Dept Forest Management, Missoula, MT 59812 USA.
EM solomon.dobrowski@umontana.edu
RI Abatzoglou, John/C-7635-2012; Schwartz, Michael/C-3184-2014;
OI Abatzoglou, John/0000-0001-7599-9750; Schwartz,
Michael/0000-0003-3521-3367; Greenberg, Jonathan/0000-0001-8435-9077
FU National Science Foundation [BCS-0819430, EPS-0814387]; USDA CSREES
[2008-38420-19524]; USDA Forest Service Rocky Mountain Research Station
[JV11221635-201]
FX This research was supported by the National Science Foundation
(BCS-0819430 to S.Z.D; EPS-0814387 to J.T.A); the USDA CSREES
2008-38420-19524 to A. K. S; and by the USDA Forest Service Rocky
Mountain Research Station (JV11221635-201). We thank Dan Gavin for
comments on an earlier draft and two anonymous reviewers whose
suggestions greatly improved the manuscript.
NR 61
TC 79
Z9 79
U1 8
U2 134
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1354-1013
EI 1365-2486
J9 GLOBAL CHANGE BIOL
JI Glob. Change Biol.
PD JAN
PY 2013
VL 19
IS 1
BP 241
EP 251
DI 10.1111/gcb.12026
PG 11
WC Biodiversity Conservation; Ecology; Environmental Sciences
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA 051VE
UT WOS:000312155100020
PM 23504735
ER
PT J
AU Iqbal, J
Castellano, MJ
Parkin, TB
AF Iqbal, Javed
Castellano, Michael J.
Parkin, Timothy B.
TI Evaluation of photoacoustic infrared spectroscopy for simultaneous
measurement of N2O and CO2 gas concentrations and fluxes at the soil
surface
SO GLOBAL CHANGE BIOLOGY
LA English
DT Article
DE carbon dioxide; gas chromatography; humidity; nitrous oxide;
photacoustic infrared gas analyzer
ID NITROUS-OXIDE EMISSIONS; GREENHOUSE-GAS; SYSTEMS
AB Simultaneous measurement of N2O and CO2 flux at the soil surface with photoacoustic infrared spectroscopy (PAS) is gaining popularity due to portability, low maintenance, and ease-of-operation. However, the ability of PAS to measure N2O with accuracy and precision similar to gas chromatography (GC) is uncertain due to overlap in N2O, CO2, and H2O absorbance spectra combined with the large range in analyte concentrations. We tested the ability of six PAS units to simultaneously measure N2O and CO2 gas concentrations and fluxes with accuracy and precision similar to two GC units. We also evaluated H2O vapor and CO2 interferences with N2O measurement. The accuracy and precision of standard gas concentration measurements with PAS and GC were similar. High water vapor (similar to 26 600 ppm) and CO2 concentrations (similar to 4500 ppm) did not interfere with N2O measurement across the concentration range typically observed in static flux chambers at the soil surface (similar to 0.53.0 ppm N2O). On average, N2O fluxes measured with the six PAS were 4.7% higher than one GC and 9.9% lower than the second GC.
C1 [Iqbal, Javed; Castellano, Michael J.] Iowa State Univ, Dept Agron, Ames, IA 50011 USA.
[Parkin, Timothy B.] ARS, Natl Lab Agr & Environm, USDA, Ames, IA 50011 USA.
RP Iqbal, J (reprint author), Iowa State Univ, Dept Agron, Ames, IA 50011 USA.
EM jiqbal.soil@yahoo.com
OI Castellano, Michael/0000-0003-1411-7931
FU USDA-NIFA [2011-68002-30190]
FX This research was funded by USDA-NIFA, Award No. 2011-68002-30190. We
thank Whitney L. Bouma and Iowa State University Department of Agronomy
Crop Production and Physiology Laboratory for assistance with GC
analysis.
NR 22
TC 17
Z9 17
U1 4
U2 96
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1354-1013
J9 GLOBAL CHANGE BIOL
JI Glob. Change Biol.
PD JAN
PY 2013
VL 19
IS 1
BP 327
EP 336
DI 10.1111/gcb.12021
PG 10
WC Biodiversity Conservation; Ecology; Environmental Sciences
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA 051VE
UT WOS:000312155100028
PM 23504743
ER
PT J
AU Kane, NC
Burke, JM
Marek, L
Seiler, G
Vear, F
Baute, G
Knapp, SJ
Vincourt, P
Rieseberg, LH
AF Kane, Nolan C.
Burke, John M.
Marek, Laura
Seiler, Gerald
Vear, Felicity
Baute, Gregory
Knapp, Steven J.
Vincourt, Patrick
Rieseberg, Loren H.
TI Sunflower genetic, genomic and ecological resources
SO MOLECULAR ECOLOGY RESOURCES
LA English
DT Review
DE adaptation; agriculture; angiosperms; ecological genetics;
hybridization; speciation
ID HELIANTHUS-ANNUUS-L.; CYTOPLASMIC MALE-STERILITY; AGROBACTERIUM-MEDIATED
TRANSFORMATION; HOMOPLOID HYBRID SUNFLOWER; QUANTITATIVE TRAIT LOCI;
RFLP LINKAGE MAP; CULTIVATED SUNFLOWER; WILD SUNFLOWERS; ADAPTIVE
INTROGRESSION; TRANSCRIBED SPACER
AB Long a major focus of genetic research and breeding, sunflowers (Helianthus) are emerging as an increasingly important experimental system for ecological and evolutionary studies. Here, we review the various attributes of wild and domesticated sunflowers that make them valuable for ecological experimentation and describe the numerous publicly available resources that have enabled rapid advances in ecological and evolutionary genetics. Resources include seed collections available from germplasm centres at the USDA and INRA, genomic and EST sequences, mapping populations, genetic markers, genetic and physical maps and other forward- and reverse-genetic tools. We also discuss some of the key evolutionary, genetic and ecological questions being addressed in sunflowers, as well as gaps in our knowledge and promising areas for future research.
C1 [Kane, Nolan C.] Univ Colorado, Dept Ecol & Evolutionary Biol, Boulder, CO 80309 USA.
[Kane, Nolan C.; Baute, Gregory; Rieseberg, Loren H.] Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada.
[Burke, John M.] Univ Georgia, Dept Plant Biol, Athens, GA 30602 USA.
[Marek, Laura] Iowa State Univ, NCRPIS, Ames, IA 50011 USA.
[Seiler, Gerald] ARS, USDA, NCSL, Fargo, ND 58102 USA.
[Vear, Felicity] INRA, UMR 1095, F-63000 Clermont Ferrand, France.
[Knapp, Steven J.] Monsanto Vegetable Seeds, Woodland, CA 95695 USA.
[Vincourt, Patrick] INRA, Lab Interact Plantes Microorganismes, F-31326 Castanet Tolosan, France.
[Vincourt, Patrick] CNRS, Lab Interact Plantes Microorganismes, F-31326 Castanet Tolosan, France.
[Rieseberg, Loren H.] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA.
RP Kane, NC (reprint author), Univ Colorado, Dept Ecol & Evolutionary Biol, CB334,Ramaley N395, Boulder, CO 80309 USA.
EM nckane@gmail.com
RI Burke, John/A-3502-2013; Rieseberg, Loren/B-3591-2013; KANE,
NOLAN/B-7652-2016
OI Burke, John/0000-0002-1412-5539; Rieseberg, Loren/0000-0002-2712-2417;
KANE, NOLAN/0000-0001-9133-6543
FU Genome Canada; Genome BC; French National Institute for Agricultural
Research (INRA); US National Science Foundation [DEB0421630,
DBI-0820451]; US Department of Agriculture [2008-35300-19263,
2008-35300-04579, 2008-35504-04854, 2010-33522-21668]
FX This research was supported by Genome Canada, Genome BC, the French
National Institute for Agricultural Research (INRA), the US National
Science Foundation (DEB0421630; DBI-0820451) and the US Department of
Agriculture (2008-35300-19263, 2008-35300-04579, 2008-35504-04854,
2010-33522-21668).
NR 113
TC 21
Z9 21
U1 5
U2 71
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1755-098X
J9 MOL ECOL RESOUR
JI Mol. Ecol. Resour.
PD JAN
PY 2013
VL 13
IS 1
BP 10
EP 20
DI 10.1111/1755-0998.12023
PG 11
WC Biochemistry & Molecular Biology; Ecology; Evolutionary Biology
SC Biochemistry & Molecular Biology; Environmental Sciences & Ecology;
Evolutionary Biology
GA 053XS
UT WOS:000312309200003
PM 23039950
ER
PT J
AU Njuguna, W
Liston, A
Cronn, R
Ashman, TL
Bassil, N
AF Njuguna, Wambui
Liston, Aaron
Cronn, Richard
Ashman, Tia-Lynn
Bassil, Nahla
TI Insights into phylogeny, sex function and age of Fragaria based on whole
chloroplast genome sequencing
SO MOLECULAR PHYLOGENETICS AND EVOLUTION
LA English
DT Article
DE Plastome; Polyploidy; Self-compatibility
ID BREEDING SYSTEMS; OCTOPLOID STRAWBERRY; GENDER DIMORPHISM; NONCODING
NUCLEAR; WASHINGTON-STATE; WILD STRAWBERRY; EVOLUTION; DNA; ROSACEAE;
GENETICS
AB The cultivated strawberry is one of the youngest domesticated plants, developed in France in the 1700s from chance hybridization between two western hemisphere octoploid species. However, little is known about the evolution of the species that gave rise to this important fruit crop. phylogenetic analysis of chloroplast genome sequences of 21 Fragaria species and subspecies resolves the western North American diploid F. vesca subsp. bracteata as sister to the clade of octoploid/decaploid species. No extant tetraploids or hexaploids are directly involved in the maternal ancestry of the octoploids.
There is strong geographic segregation of chloroplast haplotypes in subsp. bracteata, and the gynodioecious Pacific Coast populations are implicated as both the maternal lineage and the source of male-sterility in the octoploid strawberries. Analysis of sexual system evolution in Fragaria provides evidence that the loss of male and female function can follow polyploidization, but does not seem to be associated with loss of self-incompatibility following genome doubling. Character-state mapping provided insight into sexual system evolution and its association with loss of self-incompatibility and genome doubling/merger. Fragaria attained its circumboreal and amphitropical distribution within the past one to four million years and the rise of the octoploid clade is dated at 0.372-2.05 million years ago. (C) 2012 Elsevier Inc. All rights reserved.
C1 [Njuguna, Wambui] Oregon State Univ, Dept Hort, Corvallis, OR 97331 USA.
[Liston, Aaron] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA.
[Cronn, Richard] US Forest Serv, Pacific NW Res Stn, Corvallis, OR 97331 USA.
[Ashman, Tia-Lynn] Univ Pittsburgh, Dept Biol Sci, Pittsburgh, PA 15260 USA.
[Bassil, Nahla] ARS, USDA, Corvallis, OR 97333 USA.
RP Njuguna, W (reprint author), Eurofins Lancaster Labs, 2425 New Holland Pike, Lancaster, PA 17605 USA.
EM WYoung@lancasterlabs.com; listona@science.oregonstate.edu;
rcronn@fs.fed.us; tia1@pitt.edu; nahla.bassil@ars.usda.gov
FU NSF [DEB 1020523, DEB 1020271]
FX The authors would like to thank Theodore Bunch, Michael Dossett,
Rajanikanth Govindarajulu, Brian Knaus, Stephen Meyers, Matthew Parks,
Sushma Naithani, April Nyberg, and Sarah Sundholm for their invaluable
technical support during this project. We would also like to acknowledge
the OSU Center for Genome Research and Biotechnology for their
invaluable help in sequencing (Mark Dasenko) and bioinformatic
assistance and data transfer (Chris Sullivan). We also thank Manuel
Gonzalez Ledesma and David Gernandt for providing specimen for F. vesca
subsp. bracteata from Hidalgo, Mexico. Thanks also to Dr. Jim Hancock
and Dr. Daniel Potter for thorough review of this manuscript. T.L.A.
acknowledges NSF DEB 1020523 and A.L. acknowledges DEB 1020271 for
logistical support.
NR 86
TC 47
Z9 47
U1 3
U2 92
PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 1055-7903
J9 MOL PHYLOGENET EVOL
JI Mol. Phylogenet. Evol.
PD JAN
PY 2013
VL 66
IS 1
BP 17
EP 29
DI 10.1016/j.ympev.2012.08.026
PG 13
WC Biochemistry & Molecular Biology; Evolutionary Biology; Genetics &
Heredity
SC Biochemistry & Molecular Biology; Evolutionary Biology; Genetics &
Heredity
GA 055LM
UT WOS:000312417800002
PM 22982444
ER
PT J
AU Replogle, A
Wang, JY
Paolillo, V
Smeda, J
Kinoshita, A
Durbak, A
Tax, FE
Wang, XH
Sawa, S
Mitchum, MG
AF Replogle, Amy
Wang, Jianying
Paolillo, Vitoria
Smeda, John
Kinoshita, Atsuko
Durbak, Amanda
Tax, Frans E.
Wang, Xiaohong
Sawa, Shinichiro
Mitchum, Melissa G.
TI Synergistic Interaction of CLAVATA1, CLAVATA2, and RECEPTOR-LIKE PROTEIN
KINASE 2 in Cyst Nematode Parasitism of Arabidopsis
SO MOLECULAR PLANT-MICROBE INTERACTIONS
LA English
DT Article
ID STEM-CELL HOMEOSTASIS; HETERODERA-SCHACHTII; ROOT-MERISTEM; PLANT
DEVELOPMENT; GENE-EXPRESSION; SHOOT MERISTEMS; FEEDING CELLS; CLE
PEPTIDES; THALIANA; HOST
AB Plant-parasitic cyst nematodes secrete CLAVATA3 (CLV3)/ENDOSPERM SURROUNDING REGION (CLE)-like effector proteins. These proteins act as ligand mimics of plant CLE peptides and are required for successful nematode infection. Previously, we showed that the CLV2/CORYNE (CRN) heterodimer receptor complex is required for nematode CLE signaling. However, there was only a partial reduction in nematode infection when this signaling was disrupted, indicating that there might be additional nematode CLE receptors. In this study, we demonstrate that CLV1 and RECEPTOR-LIKE PROTEIN KINASE 2/TOADSTOOL2 (RPK2), two additional receptors that can transmit the CLV3 signal independent of CLV2/CRN for shoot apical meristem maintenance, also play a role in nematode CLE perception. Localization studies showed that both receptors are expressed in nematode-induced syncytia. Infection assays with clv1 and rpk2 single mutants revealed a decrease in both nematode infection and syncytium size. Significantly, further reduction in nematode infection was observed when rpk2 was combined with clv1 and clv2 mutants. Taken together, our results indicate that parallel signaling pathways involving CLV1, CLV2, and RPK2 are important for nematode parasitism.
C1 [Replogle, Amy; Wang, Jianying; Paolillo, Vitoria; Smeda, John; Mitchum, Melissa G.] Univ Missouri, Div Plant Sci, Columbia, MO 65211 USA.
[Replogle, Amy; Wang, Jianying; Paolillo, Vitoria; Smeda, John; Mitchum, Melissa G.] Univ Missouri, Bond Life Sci Ctr, Columbia, MO 65211 USA.
[Kinoshita, Atsuko] RIKEN, Plant Sci Ctr, Tsurumi Ku, Yokohama, Kanagawa 2300045, Japan.
[Durbak, Amanda; Tax, Frans E.] Univ Arizona, Dept Mol & Cellular Biol, Tucson, AZ 85721 USA.
[Durbak, Amanda; Tax, Frans E.] Univ Arizona, Sch Plant Sci, Tucson, AZ 85721 USA.
[Wang, Xiaohong] Cornell Univ, USDA ARS, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA.
[Wang, Xiaohong] Cornell Univ, Dept Plant Pathol & Plant Microbe Biol, Ithaca, NY 14853 USA.
[Sawa, Shinichiro] Kumamoto Univ, Grad Sch Sci & Technol, Kumamoto, Japan.
RP Mitchum, MG (reprint author), Univ Missouri, Div Plant Sci, Columbia, MO 65211 USA.
EM goellnerm@missouri.edu
OI Replogle, Amy/0000-0002-5880-1308; Tax, Frans/0000-0002-1386-3310
FU National Science Foundation (NSF) [NSF IBN-0347675]; United States
Department of Agriculture (USDA)-National Research Initiative
Competitive [2009-35302-05304]; USDA [2008-34113-19420]; MU Life
Sciences Fellowship
FX We thank R. Heinz for the maintenance of the nematode cultures and J.
Mercurio at MU Molecular Cytology Core for help with imagine. This work
was supported by a National Science Foundation (NSF) CAREER grant (grant
number NSF IBN-0347675 to F. E. Tax), the United States Department of
Agriculture (USDA)-National Research Initiative Competitive Grants
Program (grant number 2009-35302-05304 to M. G. Mitchum and X. Wang), a
USDA Special Grant (grant number 2008-34113-19420 to M. G. Mitchum), and
an MU Life Sciences Fellowship to A. Replogle.
NR 67
TC 21
Z9 22
U1 1
U2 24
PU AMER PHYTOPATHOLOGICAL SOC
PI ST PAUL
PA 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
SN 0894-0282
J9 MOL PLANT MICROBE IN
JI Mol. Plant-Microbe Interact.
PD JAN
PY 2013
VL 26
IS 1
BP 87
EP 96
DI 10.1094/MPMI-05-12-0118-FI
PG 10
WC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Plant Sciences
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Plant Sciences
GA 055LW
UT WOS:000312418800011
PM 22835273
ER
PT J
AU Booth, SL
Centi, A
Smith, SR
Gundberg, C
AF Booth, Sarah L.
Centi, Amanda
Smith, Steven R.
Gundberg, Caren
TI The role of osteocalcin in human glucose metabolism: marker or mediator?
SO NATURE REVIEWS ENDOCRINOLOGY
LA English
DT Review
ID GAMMA-CARBOXYGLUTAMIC ACID; BONE-MINERAL DENSITY; VITAMIN-K
SUPPLEMENTATION; TYPE-2 DIABETES-MELLITUS; BETA-CELL FUNCTION; SERUM
OSTEOCALCIN; ENERGY-METABOLISM; BIOCHEMICAL MARKERS; GLA-PROTEIN;
UNDERCARBOXYLATED OSTEOCALCIN
AB Increasing evidence supports an association between the skeleton and energy metabolism. These interactions are mediated by a variety of hormones, cytokines and nutrients. Here, the evidence for a role of osteocalcin in the regulation of glucose metabolism in humans is reviewed. Osteocalcin is a bone matrix protein that regulates hydroxyapatite size and shape through its vitamin-K-dependent, gamma-carboxylated form. The concentration of osteocalcin in the circulation is a measure of bone formation. The undercarboxylated form of osteocalcin is active in glucose metabolism in mice. Total serum osteocalcin concentrations in humans are inversely associated with measures of glucose metabolism; however, human data are inconclusive with regard to the role of uncarboxylated osteocalcin in glucose metabolism because most studies do not account for the influence of vitamin K on the proportion of undercarboxylated osteocalcin or differentiate between the total and uncarboxylated forms of osteocalcin. Furthermore, most human studies do not concomitantly measure other bone turnover markers to isolate the role of osteocalcin as a measure of bone formation from its effect on glucose metabolism. Carefully designed studies are required to define the role of osteocalcin and its carboxylated or undercarboxylated forms in the regulation of glucose metabolism in humans. Booth, S. L. et al. Nat. Rev. Endocrinol. 9, 43-55 (2013); published online 13 November 2012; corrected online 23 November 2012; doi:10.1038/nrendo.2012.201
C1 [Booth, Sarah L.; Centi, Amanda] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Smith, Steven R.] Florida Hosp, Sanford Burnham Inst, Translat Res Inst Metab & Diabet, Orlando, FL 32804 USA.
[Gundberg, Caren] Yale Univ, Sch Med, New Haven, CT 06520 USA.
RP Booth, SL (reprint author), Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, 711 Washington St, Boston, MA 02111 USA.
EM sarah.booth@tufts.edu
FU US Department of Agriculture (USDA), Agricultural Research Service
[58-1950-7-707]; NIH [DK69341, AG14759, AR38460, P30 DK04735]
FX The authors' research is supported by the US Department of Agriculture
(USDA), Agricultural Research Service, under Cooperative Agreement No.
58-1950-7-707, and NIH grants DK69341, AG14759, AR38460 and P30 DK04735.
Any opinions, findings, conclusions, or recommendations expressed in
this publication are those of the authors and do not necessarily reflect
the views of the USDA.
NR 148
TC 70
Z9 70
U1 2
U2 32
PU NATURE PUBLISHING GROUP
PI NEW YORK
PA 75 VARICK ST, 9TH FLR, NEW YORK, NY 10013-1917 USA
SN 1759-5029
J9 NAT REV ENDOCRINOL
JI Nat. Rev. Endocrinol.
PD JAN
PY 2013
VL 9
IS 1
BP 43
EP 55
DI 10.1038/nrendo.2012.201
PG 13
WC Endocrinology & Metabolism
SC Endocrinology & Metabolism
GA 055AT
UT WOS:000312387900008
PM 23147574
ER
PT J
AU Bolton, MD
Rivera, V
Secor, G
AF Bolton, Melvin D.
Rivera, Viviana
Secor, Gary
TI Identification of the G143A mutation associated with QoI resistance in
Cercospora beticola field isolates from Michigan, United States
SO PEST MANAGEMENT SCIENCE
LA English
DT Article
DE Cercospora leaf spot; fungicide resistance; G143A; quinone outside
inhibitor; strobilurin; sugar beet
ID CYTOCHROME-B GENE; INHIBITOR FUNGICIDES; SUGAR-BEET; POPULATIONS; DNA
AB BACKGROUND: Cercospora leaf spot (CLS), caused by the fungus Cercospora beticola, is the most serious foliar disease of sugar beet (Beta vulgaris L.) worldwide. Disease control is mainly achieved by timely fungicide applications. In 2011, CLS control failures were reported in spite of application of quinone outside inhibitor (QoI) fungicide in several counties in Michigan, United States. The purpose of this study was to confirm the resistant phenotype and identify the molecular basis for QoI resistance of Michigan C. beticola isolates. RESULTS: Isolates collected in Michigan in 1998 and 1999 that had no previous exposure to the QoI fungicides trifloxystrobin or pyraclostrobin exhibited QoI EC50 values of <= 0.006 mu g mL-1. In contrast, all isolates obtained in 2011 exhibited EC50 values of > 0.92 mu g mL-1 to both fungicides and harbored a mutation in cytochrome b (cytb) that led to an amino acid exchange from glycine to alanine at position 143 (G143A) compared with baseline QoI-sensitive isolates. Microsatellite analysis of the isolates suggested that QoI resistance emerged independently in multiple genotypic backgrounds at multiple locations. A real-time PCR assay utilizing dual-labeled fluorogenic probes was developed to detect and differentiate QoI-resistant isolates harboring the G143A mutation from sensitive isolates. CONCLUSION: The G143A mutation in cytb is associated with QoI resistance in C. beticola. Accurate monitoring of this mutation will be essential for fungicide resistance management in this pathosystem. Copyright (c) 2012 Society of Chemical Industry
C1 [Bolton, Melvin D.] ARS, USDA, No Crop Sci Lab, Fargo, ND 58102 USA.
[Bolton, Melvin D.; Rivera, Viviana; Secor, Gary] N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58105 USA.
RP Bolton, MD (reprint author), ARS, USDA, No Crop Sci Lab, 1605 Albrecht Blvd N, Fargo, ND 58102 USA.
EM Melvin.Bolton@ars.usda.gov
FU USDA - ARS CRIS [5442-220000-42-00D]; Beet Sugar Development Foundation;
Sugarbeet Research and Education Board of Minnesota and North Dakota
FX The authors thank X Wang for excellent technical assistance and Dr J
Suttle (USDA - ARS) for critical review of the manuscript. The authors
thank Dr S Poindexter (Michigan State University) and Dr J Stewart
(Michigan Sugar Company) for helpful discussions. Mention of trade names
or commercial products in this publication is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the USDA. This research was supported by USDA - ARS CRIS
project 5442-220000-42-00D and grants from the Beet Sugar Development
Foundation and the Sugarbeet Research and Education Board of Minnesota
and North Dakota.
NR 20
TC 16
Z9 16
U1 1
U2 43
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1526-498X
J9 PEST MANAG SCI
JI Pest Manag. Sci.
PD JAN
PY 2013
VL 69
IS 1
BP 35
EP 39
DI 10.1002/ps.3358
PG 5
WC Agronomy; Entomology
SC Agriculture; Entomology
GA 053YN
UT WOS:000312311300006
PM 22761173
ER
PT J
AU Knight, AL
Light, DM
AF Knight, Alan L.
Light, Douglas M.
TI Adding microencapsulated pear ester to insecticides for control of Cydia
pomonella (Lepidoptera: Tortricidae) in apple
SO PEST MANAGEMENT SCIENCE
LA English
DT Article
DE codling moth; kairomone; adjuvant; mating disruption
ID CODLING MOTH LEPIDOPTERA; MATING DISRUPTION; SEX-PHEROMONE; L.
LEPIDOPTERA; LARVAE; OLETHREUTIDAE; GRANULOVIRUS; MANAGEMENT; KAIROMONE;
CODLEMONE
AB BACKGROUND: The possibility of improving the efficacy of various insecticides for codling moth, Cydia pomonella (L.), by the addition of a microencapsulated formulation of pear ester, ethyl (2E, 4Z)-2,4-decadienoate (PE-MEC, 5% AI), was evaluated in field trials in apple from 2005 to 2009. RESULTS: The addition of PE-MEC (<3.0 g AI ha-1) significantly lowered fruit injury with low rates of organophosphate and neonicotinoid insecticides. The addition of PE-MEC (1.48 g AI ha-1) to maximum label rates of insecticides with moderate activity for codling moth, such as ebamectin benzoate, spinosad and methoxyfenozide, significantly improved their effectiveness. However, PE-MEC did not consistently improve the activity of maximum label rates of either rynaxypyr or spinetoram. The addition of PE-MEC with seasonal spray programs of acetamiprid and azinphos-methyl in combination with the use of sex pheromones for mating disruption provided the most effective control. CONCLUSION: The addition of PE-MEC can improve the effectiveness of some insecticides for codling moth in apple. Insecticides active via dermal toxicity are more strongly improved by the addition of PE-MEC. Season-long use of PE-MEC can also augment the effectiveness of mating disruption. Adding PE-MEC to variable integrated management programs for C. pomonella should be further investigated. Published 2012 by John Wiley & Sons, Ltd.
C1 [Knight, Alan L.] ARS, Yakima Agr Res Lab, USDA, Wapato, WA 98951 USA.
[Light, Douglas M.] USDA, Agr Res Serv, Albany, CA USA.
RP Knight, AL (reprint author), ARS, Yakima Agr Res Lab, USDA, 5230 Konnowac Pass Rd, Wapato, WA 98951 USA.
EM alan.knight@ars.usda.gov
NR 37
TC 2
Z9 3
U1 1
U2 45
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1526-498X
J9 PEST MANAG SCI
JI Pest Manag. Sci.
PD JAN
PY 2013
VL 69
IS 1
BP 66
EP 74
DI 10.1002/ps.3363
PG 9
WC Agronomy; Entomology
SC Agriculture; Entomology
GA 053YN
UT WOS:000312311300010
PM 22807277
ER
PT J
AU Peterson, CJ
Davis, RW
AF Peterson, Chris J.
Davis, Robert W.
TI Mobility, longevity and activity of chlorfenapyr in soils treated at a
termiticidal rate
SO PEST MANAGEMENT SCIENCE
LA English
DT Article
DE chlorfenapyr; Phantom (R); soil mobility; longevity; termite
ID SUBTERRANEAN TERMITES ISOPTERA; RHINOTERMITIDAE; DEGRADATION;
INSECTICIDE; COLUMNS
AB BACKGROUND: The mobility, longevity and termiticidal activity of chlorfenapyr applied to soils at the termiticidal labeled rate was evaluated for 30 months after treatment (MAT) in a greenhouse study. RESULTS: There was little dissipation of chlorfenapyr in soil treated at the labeled rate for perimeter treatments for the prevention and control of termite infestations. Chlorfenapyr was detected in soil immediately below the initially treated soil in the packed soil columns. This was likely due to settling of soil. The treated soil remained toxic to subterranean termites in 3 and 7 day bioassays over the duration of the study. The treated soil displayed slow-acting properties regarding toxicity to termites. Trace amounts of chlorfenapyr were detected in the eluates of packed soil cones. CONCLUSION: The commercial formulation of chlorfenapyr used in this study (21.45% concentrate diluted to 0.125% prior to application) killed 100% of the tested subterranean termites for at least 30 months. Copyright (c) 2012 Society of Chemical Industry
C1 [Peterson, Chris J.] USDA Forest Serv, Insects Dis & Invas Plants, Starkville, MS 39759 USA.
[Davis, Robert W.] BASF Corp, Pflugerville, TX USA.
RP Peterson, CJ (reprint author), USDA Forest Serv, Insects Dis & Invas Plants, Starkville, MS 39759 USA.
EM cjpeterson@fs.fed.us
FU BASF Corp. [SRS 08-CO-11330130-012]
FX The authors thank Craig Bell and Blossie Boyd for technical assistance.
Funding for this project was provided by BASF Corp., agreement number
SRS 08-CO-11330130-012.
NR 17
TC 0
Z9 0
U1 1
U2 16
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1526-498X
J9 PEST MANAG SCI
JI Pest Manag. Sci.
PD JAN
PY 2013
VL 69
IS 1
BP 88
EP 92
DI 10.1002/ps.3366
PG 5
WC Agronomy; Entomology
SC Agriculture; Entomology
GA 053YN
UT WOS:000312311300013
PM 23129480
ER
PT J
AU Mathews, KH
Jones, KG
McConnell, MJ
Johnson, RJ
AF Mathews, Kenneth H., Jr.
Jones, Keithly G.
McConnell, Michael J.
Johnson, Rachel J.
TI Trade-adjusted measures of productivity increases in US hog production
SO AGRICULTURAL SYSTEMS
LA English
DT Article
DE Hogs; Pork; Productivity; Genetics; Imports
ID RESEARCH-AND-DEVELOPMENT; CARCASS TRAITS; FACTOR DEMAND; AGRICULTURE;
DUALITY; CATTLE
AB The average dressed weight for barrows and gilts slaughtered in the United States has increased 23% since 1977, from an annual average of 163 lbs to 201 lbs in 2010. This measure of pork production includes pork produced from US born and raised hogs as well as hogs imported from Canada. This paper addresses technological change in US born and raised pork production. Since pork produced from Canadian hogs could distort estimates of technological improvement and other variables describing changes in US born and raised pork production, a method of adjusting production data series for the portion of US pork production that comes from foreign-born hogs is developed. The resulting data are used to estimate the rate of change in average dressed weight, assumed to be due to technical change in the US swine herd. Published by Elsevier Ltd.
C1 [Mathews, Kenneth H., Jr.; Jones, Keithly G.; Johnson, Rachel J.] USDA, Econ Res Serv, Markets & Trade Econ Div, Washington, DC 20024 USA.
[McConnell, Michael J.] US Int Trade Commiss, Washington, DC USA.
RP Jones, KG (reprint author), USDA, Econ Res Serv, Markets & Trade Econ Div, Patriots Plaza III,355 E St SW, Washington, DC 20024 USA.
EM kjones@ers.usda.gov
NR 31
TC 1
Z9 1
U1 1
U2 11
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0308-521X
J9 AGR SYST
JI Agric. Syst.
PD JAN
PY 2013
VL 114
BP 32
EP 37
DI 10.1016/j.agsy.2012.07.008
PG 6
WC Agriculture, Multidisciplinary
SC Agriculture
GA 052DO
UT WOS:000312178100004
ER
PT J
AU Johnson, DM
AF Johnson, David M.
TI A 2010 map estimate of annually tilled cropland within the conterminous
United States
SO AGRICULTURAL SYSTEMS
LA English
DT Article
DE Area; Classification; Cropland; Estimation; Mapping; Tillage
ID LAND-COVER DATA; CLIMATE-CHANGE; AGRICULTURAL INTENSIFICATION; IGBP
DISCOVER; UPPER MIDWEST; DATA SETS; NDVI DATA; MODIS; DATABASE; PRODUCTS
AB A ca. 2010, 30 m resolution map depicting annually tilled areas across the conterminous United States was developed. Input sources included four years, spanning 2008-2011, of annual national-level coverage Cropland Data Layer (CDL) land cover classifications as produced by the National Agricultural Statistics Service. Derived total land area under tillage from the aggregate CDL product equaled 112.8 million hectares (278.7 million acres). By comparison, the 2007 Census of Agriculture (CoA) produced an estimate of 122.9 million hectares, suggesting the map is under representing tilled area by 10.1 million hectares or 8.2%. Regression analysis using state-level summaries showed a strong, albeit biased, correlation (r-squared = 0.99) between the CDL derived tilled area and the CoA information. Notable outliers were North Dakota and Montana. Comparisons of the CDL tilled map were also made against the 2006 National Land Cover Dataset (NLCD) land cover product's Cultivated Crops category. Strong state-level regression agreement (r-squared = 0.98) was also found between the NLCD and the CDL acreages, but the NLCD estimated 8.5% more area than the CDL and thus closely matched that of the CoA. However, significant pixel level differences were found between the CDL and the NLCD. Nationally 5.6% of the maps were in disagreement as to whether cultivated or not, a large proportion considering around a seventh of the country's land area is tilled. States of Arkansas, Montana and Wisconsin had the largest absolute discrepancies between the NLCD and CDL. Accepting the CDL as reference showed a national level NLCD cropland commission error of 23.0% and omission error of 14.5%. Much of what is believed to be problematic in the NLCD could be explained by definitional issues having included alfalfa hay into their cultivated category for many areas. Ultimately, while it is likely that the CDL annually tilled area model is an underestimate of the true total, taken contextually in map form and adjusted for undercount bias it likely is the best available. Published by Elsevier Ltd.
C1 Natl Agr Stat Serv, USDA, Washington, DC USA.
RP Johnson, DM (reprint author), Natl Agr Stat Serv, USDA, Washington, DC USA.
EM dave.johnson@nass.usda.gov
NR 56
TC 23
Z9 23
U1 0
U2 38
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0308-521X
J9 AGR SYST
JI Agric. Syst.
PD JAN
PY 2013
VL 114
BP 95
EP 105
DI 10.1016/j.agsy.2012.08.004
PG 11
WC Agriculture, Multidisciplinary
SC Agriculture
GA 052DO
UT WOS:000312178100010
ER
PT J
AU Pender, RJ
Shiels, AB
Bialic-Murphy, L
Mosher, SM
AF Pender, Richard J.
Shiels, Aaron B.
Bialic-Murphy, Lalasia
Mosher, Stephen M.
TI Large-scale rodent control reduces pre- and post-dispersal seed
predation of the endangered Hawaiian lobeliad, Cyanea superba subsp
superba (Campanulaceae)
SO BIOLOGICAL INVASIONS
LA English
DT Article
DE Alien invasive species; Captive-feeding trials; Frugivory; Mus musculus;
Plant recruitment; Rattus rattus
ID NORTHERN OFFSHORE ISLANDS; RATTUS-EXULANS PEALE; NEW-ZEALAND; INTRODUCED
RODENTS; INVASIVE RATS; SMALL MAMMALS; DRY FOREST; ERADICATION;
RECRUITMENT; DISPERSAL
AB Large-scale rodent control can help to manage endangered species that are vulnerable to invasive rodent consumption. A 26 ha rodent snap-trap grid was installed in montane forest on Oahu Island, Hawaii, in order to protect endangered snails and plants. To assess the effectiveness of this trapping operation in reducing fruit consumption and seed predation of the endangered Hawaiian lobeliad, Cyanea superba subsp. superba, pre- and post-dispersal C. superba fruit consumption were monitored for 36 plants at the site with rodent control (Kahanahaiki) and 42 plants at an adjacent site without rodent control (Pahole). Over 47 % of all monitored fruit were eaten on the plants at Pahole compared to 4 % at Kahanahaiki. Images captured using motion-sensing cameras suggest that black rats (Rattus rattus) were the only pre-dispersal fruit consumers. To quantify post-dispersal fruit consumption, and to identify the culprit frugivore(s), mature fruit were placed in tracking tunnels positioned on the forest floor and checked daily. At Pahole, all of the fruit were consumed by rats compared to 29 % at Kahanahaiki. Lastly, to determine if rodents from the sites were predators or dispersers of C. superba seed, fruit were fed to captive black rats and house mice (Mus musculus). Black rats consumed entire fruit, killing all the seed, while mice did little damage to the fruit and seed. Therefore, large-scale rat trapping can directly benefit the reproduction of C. superba subsp. superba. Controlling black rats at restoration sites appears integral to the successful restoration of this endangered plant species.
C1 [Pender, Richard J.; Bialic-Murphy, Lalasia; Mosher, Stephen M.] Univ Hawaii Manoa, Dept Bot, Pacific Cooperat Studies Unit, Honolulu, HI 96822 USA.
[Shiels, Aaron B.] Natl Wildlife Res Ctr, USDA, APHIS, Hawaii Field Stn, Hilo, HI 96721 USA.
[Bialic-Murphy, Lalasia; Mosher, Stephen M.] US Army Garrison, Oahu Army Nat Resources Program, Environm Div, Directorate Publ Works, Schofield Barracks, HI 96857 USA.
[Mosher, Stephen M.] USN, Naval Facil Engn Command Marianas, Santa Rita, GU 96915 USA.
RP Pender, RJ (reprint author), Univ Hawaii Manoa, Dept Bot, Pacific Cooperat Studies Unit, 3190 Maile Way, Honolulu, HI 96822 USA.
EM pender@hawaii.edu
FU Oahu Army Natural Resources Program (OANRP); Fulbright New Zealand; John
R. Templin Scholarship
FX We thank the Oahu Army Natural Resources Program (OANRP) for funding and
logistical support of this project-we are especially grateful for the
many staff members that helped with the intensive and on-going rodent
trapping at Kahanahaiki. We thank both OANRP and the Pahole Natural Area
Reserve managers (State of Hawaii) for land access, and Don Drake, Kapua
Kawelo, Matthew Keir, Clifford Morden, Julia Rowe, Lauren Weisenberger,
and two anonymous reviewers for their helpful comments on an earlier
draft of this manuscript. RJP and ABS wish to thank the Pacific
Cooperative Studies Unit and Clifford Morden for providing logistical
support. RJP gratefully acknowledges the financial support provided by
Fulbright New Zealand and the John R. Templin Scholarship. This research
was approved by the University of Hawaii Animal Use and Care Committee.
NR 45
TC 6
Z9 6
U1 11
U2 95
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 1387-3547
J9 BIOL INVASIONS
JI Biol. Invasions
PD JAN
PY 2013
VL 15
IS 1
BP 213
EP 223
DI 10.1007/s10530-012-0280-3
PG 11
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA 051PZ
UT WOS:000312140800017
ER
PT J
AU Leathers, TD
Manitchotpisit, P
AF Leathers, Timothy D.
Manitchotpisit, Pennapa
TI Production of poly(beta-L-malic acid) (PMA) from agricultural biomass
substrates by Aureobasidium pullulans
SO BIOTECHNOLOGY LETTERS
LA English
DT Article
DE Aureobasidium pullulans; Corn fiber; Poly(beta-L-malic acid); Wheat
straw
ID POLY(BETA-MALIC ACID); INVITRO
AB For the first time the production of poly(beta-l -malic acid) (PMA) has been achieved using agricultural biomass substrates by the yeast-like fungus Aureobasidium pullulans. Strains NRRL Y-2311-1, NRRL 50382, NRRL 50383, and NRRL 50384, representing diverse isolation sources and phylogenetic clades, produced PMA from alkaline H2O2-pretreated corn fiber and wheat straw as sole carbon sources. Pretreated wheat straw was better than pretreated corn fiber, and strain NRRL 50383 gave the highest overall yields of PMA. The addition of CaCO3 plus supplementary hydrolytic enzymes enhanced PMA production. Four basal media were compared for PMA production, and the best was found to be a N-limited pullulan production medium (PM). In this medium, PMA production took place during growth limitation. Under optimal conditions, strain NRRL 50383 produced more than 20 g PMA/l from 5 % (w/v) pretreated wheat straw in PM with 3 % (w/v) CaCO3 and supplementary enzymes.
C1 [Leathers, Timothy D.] ARS, Renewable Product Technol Res Unit, Natl Ctr Agr Utilizat Res, USDA, Peoria, IL 61604 USA.
[Manitchotpisit, Pennapa] Rangsit Univ, Biochem Unit, Dept Med Sci, Fac Sci, Lakhok 12000, Pathumthani, Thailand.
RP Leathers, TD (reprint author), ARS, Renewable Product Technol Res Unit, Natl Ctr Agr Utilizat Res, USDA, 1815 N Univ St, Peoria, IL 61604 USA.
EM Tim.Leathers@ars.usda.gov
NR 26
TC 16
Z9 16
U1 3
U2 38
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0141-5492
J9 BIOTECHNOL LETT
JI Biotechnol. Lett.
PD JAN
PY 2013
VL 35
IS 1
BP 83
EP 89
DI 10.1007/s10529-012-1045-x
PG 7
WC Biotechnology & Applied Microbiology
SC Biotechnology & Applied Microbiology
GA 050NM
UT WOS:000312060200010
PM 22955679
ER
PT J
AU Brenner, EC
Chomel, BB
Singhasivanon, OU
Namekata, DY
Kasten, RW
Kass, PH
Cortes-Vecino, JA
Gennari, SM
Rajapakse, RP
Huong, LT
Dubey, JP
AF Brenner, E. C.
Chomel, B. B.
Singhasivanon, O. -U.
Namekata, D. Y.
Kasten, R. W.
Kass, P. H.
Cortes-Vecino, J. A.
Gennari, S. M.
Rajapakse, R. P.
Huong, L. T.
Dubey, J. P.
TI Bartonella infection in urban and rural dogs from the tropics: Brazil,
Colombia, Sri Lanka and Vietnam
SO EPIDEMIOLOGY AND INFECTION
LA English
DT Article
DE Bartonella; Brazil; Colombia; Sri Lanka; stray dogs; Vietnam
ID VINSONII SUBSP BERKHOFFII; ARTHROPOD-BORNE PATHOGENS; TOXOPLASMA-GONDII;
GENETIC-CHARACTERIZATION; CANINE BARTONELLOSIS; MOLECULAR-DETECTION;
UROCYON-LITTORALIS; RISK-FACTORS; GRAY FOXES; PREVALENCE
AB Dogs can be infected by a wide range of Bartonella spp., but limited studies have been conducted in tropical urban and rural dog populations. We aimed to determine Bartonella antibody prevalence in 455 domestic dogs from four tropical countries and detect Bartonella DNA in a subset of these dogs. Bartonella antibodies were detected in 38 (8.3%) dogs, including 26 (10.1%) from Colombia, nine (7.6%) from Brazil, three (5.1%) from Sri Lanka and none from Vietnam. DNA extraction was performed for 26 (63%) of the 41 seropositive and 10 seronegative dogs. Four seropositive dogs were PCR positive, including two Colombian dogs, infected with B. rochalimae and B. vinsonii subsp. berkhoffii, and two Sri Lankan dogs harbouring sequences identical to strain HMD described in dogs from Italy and Greece. This is the first detection of Bartonella infection in dogs from Colombia and Sri Lanka and identification of Bartonella strain HMD from Asia.
C1 [Brenner, E. C.; Chomel, B. B.; Singhasivanon, O. -U.; Namekata, D. Y.; Kasten, R. W.; Kass, P. H.] Univ Calif Davis, Sch Vet Med, Dept Populat Hlth & Reprod, Davis, CA 95616 USA.
[Cortes-Vecino, J. A.] Univ Nacl Colombia, Fac Med Vet & Zootecnia, Parasitol Lab, Bogota, Colombia.
[Gennari, S. M.] Univ Sao Paulo, Fac Med Vet & Zootecnia, Dept Med Vet Prevent & Saude Anim, Sao Paulo, Brazil.
[Rajapakse, R. P.] Univ Peradeniya, Fac Vet Med & Anim Sci, Dept Vet Pathobiol, Peradeniya, Sri Lanka.
[Huong, L. T.] Univ Agr & Forestry, Fac Vet Med, Dept Parasitol & Pathobiol, Ho Chi Minh City, Vietnam.
[Dubey, J. P.] ARS, USDA, Anim & Nat Resources Inst, Anim Parasit Dis Lab, Beltsville, MD USA.
RP Chomel, BB (reprint author), Univ Calif Davis, Sch Vet Med, Dept Populat Hlth & Reprod, Davis, CA 95616 USA.
EM bbchomel@ucdavis.edu
NR 40
TC 7
Z9 7
U1 2
U2 18
PU CAMBRIDGE UNIV PRESS
PI NEW YORK
PA 32 AVENUE OF THE AMERICAS, NEW YORK, NY 10013-2473 USA
SN 0950-2688
EI 1469-4409
J9 EPIDEMIOL INFECT
JI Epidemiol. Infect.
PD JAN
PY 2013
VL 141
IS 1
BP 54
EP 61
DI 10.1017/S0950268812000519
PG 8
WC Public, Environmental & Occupational Health; Infectious Diseases
SC Public, Environmental & Occupational Health; Infectious Diseases
GA 050FD
UT WOS:000312037600007
PM 22459880
ER
PT J
AU Stevanato, P
Trebbi, D
Biancardi, E
Cacco, G
McGrath, JM
Saccomani, M
AF Stevanato, Piergiorgio
Trebbi, Daniele
Biancardi, Enrico
Cacco, Giovanni
McGrath, J. Mitchell
Saccomani, Massimo
TI Evaluation of genetic diversity and root traits of sea beet accessions
of the Adriatic Sea coast
SO EUPHYTICA
LA English
DT Article
DE Abiotic stresses; Genetic resources; Microsatellites; Root apparatus
ID VULGARIS SSP MARITIMA; WILD LETTUCE LACTUCA; SUGAR-BEET; BETA-VULGARIS;
MICROSATELLITE MARKERS; GREEN-REVOLUTION; MAIZE HYBRIDS; CROP;
RELATIVES; DOMESTICATION
AB Thirty-nine sea beet [Beta vulgaris L. ssp. maritima (L.) Arcang.] accessions of the Adriatic coast were screened genetically and for their adaptive morpho-functional root traits in order to identify new sources of abiotic resistances for sugar beet breeding programs. Genetic diversity was evaluated with 21 microsatellites markers that identified 44 polymorphic alleles. Sea beets grouped into two main clusters: the West and the East Adriatic coast groups, with the latter showing higher genetic diversity. Among sea beet accessions with desirable root traits, four accessions have proved to be interesting for sugar beet [B. vulgaris (L.) ssp. vulgaris] breeding aimed to improve tolerance to nutritional stresses. Lastovo (ID 29) and Zut (ID 34) accessions were characterized by the highest values of RER, TRL, FRL and RSA still maintaining a high value of RTD, while Grado (ID 21) an Portic (ID 23) accessions were characterized by the highest RTD, but with low values of RER, TRL, FRL and RSA parameters.
C1 [Stevanato, Piergiorgio; Trebbi, Daniele; Cacco, Giovanni; Saccomani, Massimo] Univ Padua, DAFNAE, Dipartimento Agron Anim Alimenti Risorse Nat & Am, I-35020 Legnaro, Italy.
[Biancardi, Enrico] Ctr Ric Colture Ind Sede Distaccata Rovigo, CRA CIN, I-45100 Rovigo, Italy.
[McGrath, J. Mitchell] Michigan State Univ, USDA ARS, Sugar Beet & Bean Res Unit, E Lansing, MI 48824 USA.
RP Stevanato, P (reprint author), Univ Padua, DAFNAE, Dipartimento Agron Anim Alimenti Risorse Nat & Am, Viale Univ 16, I-35020 Legnaro, Italy.
EM stevanato@unipd.it
NR 57
TC 7
Z9 7
U1 1
U2 19
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0014-2336
J9 EUPHYTICA
JI Euphytica
PD JAN
PY 2013
VL 189
IS 1
BP 135
EP 146
DI 10.1007/s10681-012-0775-0
PG 12
WC Agronomy; Plant Sciences; Horticulture
SC Agriculture; Plant Sciences
GA 051LC
UT WOS:000312127200010
ER
PT J
AU Schroder, O
Bunger, J
Munack, A
Knothe, G
Krahl, J
AF Schroeder, Olaf
Buenger, Juergen
Munack, Axel
Knothe, Gerhard
Krahl, Juergen
TI Exhaust emissions and mutagenic effects of diesel fuel, biodiesel and
biodiesel blends
SO FUEL
LA English
DT Article
DE Biodiesel; B20; Diesel engine exhaust gas; Mutagenic effect; Exhaust gas
emissions
ID ULTRAFINE PARTICLES; ENGINE EMISSIONS; VEGETABLE-OIL; CARBON-BLACK;
LUNG-CANCER; PARTICULATE; RATS; TOXICITIES; INHALATION; EXPOSURE
AB The replacement of petroleum-derived fuels by renewable biogenic fuels has become of worldwide interest with the environmental effects being scientifically investigated. Biodiesel has been proven to be a suitable alternative to petrodiesel and blending up to 20% biodiesel with petrodiesel is policy promoted in the USA and the EU.
To investigate the influence of blends on the exhaust emissions and possible health effects, we performed a series of studies with several engines (Euro 0, III and IV) using blends of rapeseed-derived biodiesel and petrodiesel. Regulated and non-regulated exhaust compounds were measured and their mutagenic effects were determined using the Bacterial Reverse Mutation Assay (Ames-Test) according to OECD Guideline 471.
Exhaust emissions of blends were approximately linearly dependent on the blend composition, particularly when considering regulated emissions. However, a negative effect of blends was observed with respect to mutagenicity of the exhaust emissions. In detail, an increase of the mutagenic potential was found for blends with the maximum observed for B20. From this point of view, B20 must be considered as a critical blend when petrodiesel and biodiesel are used as binary mixtures. (C) 2012 Elsevier Ltd. All rights reserved.
C1 [Schroeder, Olaf; Munack, Axel] Johann Heinrich von Thunen Inst, Fed Res Inst Rural Areas, D-38116 Braunschweig, Germany.
[Buenger, Juergen] Ruhr Univ Bochum, BGFA Res Inst Occupat Med, D-44789 Bochum, Germany.
[Buenger, Juergen] Univ Gottingen, Inst Occupat & Social Med, D-37073 Gottingen, Germany.
[Knothe, Gerhard] USDA, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
[Krahl, Juergen] Coburg Univ Appl Sci & Arts, D-96406 Coburg, Germany.
RP Schroder, O (reprint author), Johann Heinrich von Thunen Inst, Fed Res Inst Rural Areas, D-38116 Braunschweig, Germany.
EM olaf.schroeder@vti.bund.de
NR 37
TC 9
Z9 9
U1 2
U2 39
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0016-2361
EI 1873-7153
J9 FUEL
JI Fuel
PD JAN
PY 2013
VL 103
BP 414
EP 420
DI 10.1016/j.fuel.2012.08.050
PG 7
WC Energy & Fuels; Engineering, Chemical
SC Energy & Fuels; Engineering
GA 048SF
UT WOS:000311932200053
ER
PT J
AU Ellwood, EC
Scott, MP
Lipe, WD
Matson, RG
Jones, JG
AF Ellwood, Emily C.
Scott, M. Paul
Lipe, William D.
Matson, R. G.
Jones, John G.
TI Stone-boiling maize with limestone: experimental results and
implications for nutrition among SE Utah preceramic groups
SO JOURNAL OF ARCHAEOLOGICAL SCIENCE
LA English
DT Article
DE Basketmaker II; Preceramic; Maize; Nixtamalization; Stone boiling;
Experimental archaeology
ID WESTERN NORTH-AMERICA; HOT-ROCK COOKERY; NITROGEN RETENTION; CEREAL
PROTEINS; STABLE-ISOTOPE; YOUNG CHILDREN; AMINO ACIDS; PHYTIC ACID;
CEDAR-MESA; QUALITY
AB Groups living on Cedar Mesa, SE Utah in the late Basketmaker II period (Grand Gulch phase, AD 200-400) were heavily maize-dependent, but lacked beans as a supplemental plant protein, and pottery vessels for cooking. Common occurrence of limestone fragments in their household middens suggests 1) limestone may have been used as the heating element for stone-boiling maize and 2) this practice might have made some maize proteins more available for human nutrition. Experiments examined these possibilities; results indicate that stone-boiling with Cedar Mesa limestone creates an alkaline cooking environment suitable for nixtamalization of maize kernels, and that maize cooked in this fashion shows significant increases in availability of lysine, tryptophan, and methionine. Archaeological limestone fragments from a Grand Gulch phase site show amounts of fragmentation and changes in density consistent with repeated heating. While not conclusive, these data indicate that further research (e.g., examination of archaeological limestone fragments for maize starch grains or phytoliths) is warranted. It is suggested that greater attention be paid to archaeological indications of stone-boiling with limestone among maize-dependent but pre-pottery societies. (C) 2012 Elsevier Ltd. All rights reserved.
C1 [Lipe, William D.; Jones, John G.] Washington State Univ, Dept Anthropol, Pullman, WA 99164 USA.
[Ellwood, Emily C.] Archaeol Invest NW Inc, Portland, OR 97236 USA.
[Scott, M. Paul] USDA ARS, Ames, IA 50011 USA.
[Matson, R. G.] Univ British Columbia, Dept Anthropol, Vancouver, BC V6T 1Z1, Canada.
RP Lipe, WD (reprint author), Washington State Univ, Dept Anthropol, 150 Coll Hall, Pullman, WA 99164 USA.
EM lipe@wsu.edu
RI Scott, M./E-3291-2010
NR 77
TC 3
Z9 3
U1 2
U2 32
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0305-4403
EI 1095-9238
J9 J ARCHAEOL SCI
JI J. Archaeol. Sci.
PD JAN
PY 2013
VL 40
IS 1
BP 35
EP 44
DI 10.1016/j.jas.2012.05.044
PG 10
WC Anthropology; Archaeology; Geosciences, Multidisciplinary
SC Anthropology; Archaeology; Geology
GA 047WU
UT WOS:000311873000006
ER
PT J
AU Steelman, TA
McCaffrey, S
AF Steelman, Toddi A.
McCaffrey, Sarah
TI Best practices in risk and crisis communication: Implications for
natural hazards management
SO NATURAL HAZARDS
LA English
DT Article
DE Crisis communication; Risk communication; Wildfire; Disaster; Emergency
management; Wildfire policy
ID WILDLAND-URBAN INTERFACE; FIRE; WILDFIRE; PERCEPTIONS; TRUST;
COMMUNITIES; STRATEGIES; SIMILARITY; DECISIONS; EVENT
AB As societies evolve, often the most appropriate response to the hazard must also evolve. However, such shifts in appropriate response to a hazard, whether at the individual or at the societal level, are rarely straightforward: Closing the gap between desired practice and current practice requires effective communication. Although there is a significant literature on how to encourage adaptation before an event and how to communicate during an event, there is less work tying the two together or on how to communicate shifts in larger scale societal response to a natural hazard. In this article, we bring together the best practices and theoretical literature from risk communication and crisis communication and empirical literature on wildfire communication to derive the key characteristics associated with best communication practices. We then use this framework on three case studies of wildfires in California, Montana, and Wyoming, each of which used a different strategy for managing the fire, to understand whether approaching communication more holistically can lead to more desired natural hazard management outcomes. Our working hypothesis was as follows: effective communication before and during a fire would be associated with acceptance of more flexible fire management strategies. The findings indicate how a type of desired management change (more flexible fire management) is associated with more effective communication practices before and during the event.
C1 [Steelman, Toddi A.] Univ Saskatchewan, Sch Environm & Sustainabil, Saskatoon, SK S7N SC8, Canada.
[McCaffrey, Sarah] US Forest Serv, No Res Stn, Evanston, IL USA.
RP Steelman, TA (reprint author), Univ Saskatchewan, Sch Environm & Sustainabil, 329 Kirk Hall,117 Sci Pl, Saskatoon, SK S7N SC8, Canada.
EM toddi.steelman@usask.ca
FU Joint Fire Science Program [8-1-2 4-01]; USFS Northern Research Station
FX This work was funded by the Joint Fire Science Program grant number
8-1-2 4-01 and the USFS Northern Research Station. We would like to
thank all the interviewees who participated in the research project and
our research assistants Chris Ketchie and Kathryn Reis. Two anonymous
reviewers also provided very constructive insight that helped improve
the article greatly.
NR 66
TC 19
Z9 22
U1 7
U2 74
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0921-030X
EI 1573-0840
J9 NAT HAZARDS
JI Nat. Hazards
PD JAN
PY 2013
VL 65
IS 1
BP 683
EP 705
DI 10.1007/s11069-012-0386-z
PG 23
WC Geosciences, Multidisciplinary; Meteorology & Atmospheric Sciences;
Water Resources
SC Geology; Meteorology & Atmospheric Sciences; Water Resources
GA 050XC
UT WOS:000312087100037
ER
PT J
AU Zhang, YJ
Meinzer, FC
Qi, JH
Goldstein, G
Cao, KF
AF Zhang, Yong-Jiang
Meinzer, Frederick C.
Qi, Jin-Hua
Goldstein, Guillermo
Cao, Kun-Fang
TI Midday stomatal conductance is more related to stem rather than leaf
water status in subtropical deciduous and evergreen broadleaf trees
SO PLANT CELL AND ENVIRONMENT
LA English
DT Article
DE leaf phenology; midday depression in photosynthesis; stem hydraulic
capacitance; stem water potential; stomatal regulation
ID FOREST CANOPY TREES; HYDRAULIC CONDUCTANCE; PHOTOSYNTHETIC CAPACITY;
EMBOLISM FORMATION; DIURNAL PATTERNS; SAFETY MARGINS; SAVANNA TREE;
DOUGLAS-FIR; TEMPERATURE; TRANSPORT
AB Midday depressions in stomatal conductance (gs) and photosynthesis are common in plants. The aim of this study was to understand the hydraulic determinants of midday gs, the coordination between leaf and stem hydraulics and whether regulation of midday gs differed between deciduous and evergreen broadleaf tree species in a subtropical cloud forest of Southwest (SW) China. We investigated leaf and stem hydraulics, midday leaf and stem water potentials, as well as midday gs of co-occurring deciduous and evergreen tree species. Midday gs was correlated positively with midday stem water potential across both groups of species, but not with midday leaf water potential. Species with higher stem hydraulic conductivity and greater daily reliance on stem hydraulic capacitance were able to maintain higher stem water potential and higher gs at midday. Deciduous species exhibited significantly higher stem hydraulic conductivity, greater reliance on stem capacitance, higher stem water potential and gs at midday than evergreen species. Our results suggest that midday gs is more associated with midday stem than with leaf water status, and that the functional significance of stomatal regulation in these broadleaf tree species is probably for preventing stem xylem dysfunction.
C1 [Zhang, Yong-Jiang; Qi, Jin-Hua; Cao, Kun-Fang] Chinese Acad Sci, Key Lab Trop Forest Ecol, Xishuangbanna Trop Bot Garden, Mengla 666303, Yunnan, Peoples R China.
[Zhang, Yong-Jiang; Goldstein, Guillermo] Univ Miami, Dept Biol, Coral Gables, FL 33124 USA.
[Zhang, Yong-Jiang; Qi, Jin-Hua] Chinese Acad Sci, Ailaoshan Stn Subtrop Forest Ecosyst Studies, Jingdong 676200, Peoples R China.
[Zhang, Yong-Jiang] Chinese Acad Sci, Grad Univ, Beijing 100039, Peoples R China.
[Meinzer, Frederick C.] US Forest Serv, USDA, Pacific NW Res Stn, Corvallis, OR 97331 USA.
[Goldstein, Guillermo] Univ Buenos Aires, Fac Ciencias Exactas & Nat, Dept Ecol Genet & Evoluc, Buenos Aires, DF, Argentina.
RP Cao, KF (reprint author), Chinese Acad Sci, Key Lab Trop Forest Ecol, Xishuangbanna Trop Bot Garden, Mengla 666303, Yunnan, Peoples R China.
EM goldstein@bio.miami.edu; caokf@xtbg.ac.cn
RI Meinzer, Frederick/C-3496-2012; Cao, Kun-Fang/D-2157-2009
OI Cao, Kun-Fang/0000-0002-2253-7189
FU National Science Foundation of China [30670320]
FX We thank the Ailaoshan Station for Subtropical Forest Ecosystem Studies
for logistic support. This research was supported by a National Science
Foundation of China grant (30670320). We also would like to thank Mr.
Yang Qiuyun, Mr. Zeng Xiaodong, Mr. Ai Ke, Mr. Luo Xin, Mr. Li Xinde and
Mr. Liu Yuhong for their assistance in the field work. We thank two
anonymous referees for their helpful comments. The authors declare that
they have no conflict of interest.
NR 53
TC 35
Z9 36
U1 5
U2 106
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0140-7791
J9 PLANT CELL ENVIRON
JI Plant Cell Environ.
PD JAN
PY 2013
VL 36
IS 1
BP 149
EP 158
DI 10.1111/j.1365-3040.2012.02563.x
PG 10
WC Plant Sciences
SC Plant Sciences
GA 049HS
UT WOS:000311974000011
PM 22715809
ER
PT J
AU Hall, J
Meng, Q
Sessions, BR
Fan, Z
Wang, X
Stott, R
Rutigliano, H
Davies, CJ
Panter, K
Bunch, T
White, KL
Polejaeva, IA
AF Hall, J.
Meng, Q.
Sessions, B. R.
Fan, Z.
Wang, X.
Stott, R.
Rutigliano, H.
Davies, C. J.
Panter, K.
Bunch, T.
White, K. L.
Polejaeva, I. A.
TI EFFECT OF EMBRYO CULTURE LENGTH ON PRODUCTION OF CLONED TRANSGENIC GOATS
SO REPRODUCTION FERTILITY AND DEVELOPMENT
LA English
DT Meeting Abstract
C1 [Hall, J.; Meng, Q.; Sessions, B. R.; Fan, Z.; Wang, X.; Stott, R.; Rutigliano, H.; Davies, C. J.; Bunch, T.; White, K. L.; Polejaeva, I. A.] Utah State Univ, Dept Anim Dairy & Vet Sci, Logan, UT 84322 USA.
[Panter, K.] ARS, USDA, Poisonous Plant Res Lab, Logan, UT USA.
RI Rutigliano, Heloisa/J-1933-2016
OI Rutigliano, Heloisa/0000-0003-2807-5007
NR 0
TC 0
Z9 0
U1 0
U2 5
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1031-3613
J9 REPROD FERT DEVELOP
JI Reprod. Fertil. Dev.
PY 2013
VL 25
IS 1
BP 162
EP 162
PG 1
WC Developmental Biology; Reproductive Biology; Zoology
SC Developmental Biology; Reproductive Biology; Zoology
GA 047OJ
UT WOS:000311850000042
ER
PT J
AU Meng, Q
Hall, J
Rutigliano, H
Zhou, X
Sessions, BR
Stott, R
Panter, K
Davies, CJ
Ranjan, R
Dosdall, D
MacLeod, R
Marrouche, N
White, KL
Wang, Z
Polejaeva, IA
AF Meng, Q.
Hall, J.
Rutigliano, H.
Zhou, X.
Sessions, B. R.
Stott, R.
Panter, K.
Davies, C. J.
Ranjan, R.
Dosdall, D.
MacLeod, R.
Marrouche, N.
White, K. L.
Wang, Z.
Polejaeva, I. A.
TI GENERATION OF CLONED TRANSGENIC GOATS WITH CARDIAC SPECIFIC
OVEREXPRESSION OF TRANSFORMING GROWTH FACTOR B1
SO REPRODUCTION FERTILITY AND DEVELOPMENT
LA English
DT Meeting Abstract
C1 [Meng, Q.; Hall, J.; Rutigliano, H.; Zhou, X.; Sessions, B. R.; Stott, R.; Davies, C. J.; White, K. L.; Wang, Z.; Polejaeva, I. A.] Utah State Univ, Dept Anim Dairy & Vet Sci, Logan, UT 84322 USA.
[Panter, K.] ARS, USDA, Poisonous Plant Res Lab, Logan, UT USA.
[Ranjan, R.; Dosdall, D.; MacLeod, R.; Marrouche, N.] Univ Utah, Comprehens Arrhythmia Res & Management Ctr, Salt Lake City, UT USA.
RI Rutigliano, Heloisa/J-1933-2016
OI Rutigliano, Heloisa/0000-0003-2807-5007
NR 0
TC 1
Z9 1
U1 0
U2 4
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1031-3613
J9 REPROD FERT DEVELOP
JI Reprod. Fertil. Dev.
PY 2013
VL 25
IS 1
BP 162
EP 163
PG 2
WC Developmental Biology; Reproductive Biology; Zoology
SC Developmental Biology; Reproductive Biology; Zoology
GA 047OJ
UT WOS:000311850000043
ER
PT J
AU Carwell, DB
Scott, BR
Len, J
Blackburn, H
Bondioli, KR
Gentry, GT
Godke, RA
AF Carwell, D. B.
Scott, B. R.
Len, J.
Blackburn, H.
Bondioli, K. R.
Gentry, G. T.
Godke, R. A.
TI EFFECT OF STORAGE DURATION ON POST-THAW PARAMETERS OF BULL SEMEN
SO REPRODUCTION FERTILITY AND DEVELOPMENT
LA English
DT Meeting Abstract
C1 [Carwell, D. B.; Scott, B. R.; Bondioli, K. R.; Gentry, G. T.; Godke, R. A.] Louisiana State Univ, Ctr Agr, Sch Anim Sci, Baton Rouge, LA 70803 USA.
[Len, J.] Louisiana State Univ, Sch Vet Med, Baton Rouge, LA 70803 USA.
[Blackburn, H.] ARS, Natl Anim Germplasm Program, USDA, Ft Collins, CO USA.
NR 0
TC 0
Z9 0
U1 0
U2 1
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1031-3613
J9 REPROD FERT DEVELOP
JI Reprod. Fertil. Dev.
PY 2013
VL 25
IS 1
BP 177
EP 177
PG 1
WC Developmental Biology; Reproductive Biology; Zoology
SC Developmental Biology; Reproductive Biology; Zoology
GA 047OJ
UT WOS:000311850000072
ER
PT J
AU de Frutos, C
Laguna-Barraza, R
Bermejo-Alvarez, P
Rizos, D
Gutierrez-Adan, A
AF de Frutos, C.
Laguna-Barraza, R.
Bermejo-Alvarez, P.
Rizos, D.
Gutierrez-Adan, A.
TI SPERMATOZOA TELOMERE LENGTH DETERMINES EMBRYONIC TELOMERE LENGTH BEFORE
EMBRYONIC GENOME ACTIVATION
SO REPRODUCTION FERTILITY AND DEVELOPMENT
LA English
DT Meeting Abstract
C1 [de Frutos, C.; Laguna-Barraza, R.; Rizos, D.; Gutierrez-Adan, A.] Inst Nacl Invest & Tecnol Agr & Alimentaria, Madrid, Spain.
[Bermejo-Alvarez, P.] Univ Maryland, College Pk, MD 20742 USA.
[Bermejo-Alvarez, P.] USDA, Beltsville, MD 20705 USA.
RI Gutierrez-Adan, Alfonso/A-1485-2014
OI Gutierrez-Adan, Alfonso/0000-0001-9893-9179
NR 0
TC 0
Z9 0
U1 0
U2 5
PU CSIRO PUBLISHING
PI COLLINGWOOD
PA 150 OXFORD ST, PO BOX 1139, COLLINGWOOD, VICTORIA 3066, AUSTRALIA
SN 1031-3613
J9 REPROD FERT DEVELOP
JI Reprod. Fertil. Dev.
PY 2013
VL 25
IS 1
BP 193
EP 193
PG 1
WC Developmental Biology; Reproductive Biology; Zoology
SC Developmental Biology; Reproductive Biology; Zoology
GA 047OJ
UT WOS:000311850000104
ER
PT S
AU Aboukinane, C
Moriasi, DN
Kenimer, AL
Dooley, K
Linder, J
AF Aboukinane, Chehra
Moriasi, Daniel N.
Kenimer, Ann L.
Dooley, Kim
Linder, James
GP ASEE
TI Fostering Creativity in Engineering Education through Experiential and
Team-based Learning
SO 2013 ASEE ANNUAL CONFERENCE
SE ASEE Annual Conference & Exposition
LA English
DT Proceedings Paper
CT ASEE Annual Conference
CY JUN 23-26, 2013
CL Atlanta, GA
SP ASEE
AB The Engineering Accreditation Commission (EAC) of ABET, the recognized accreditation agency for engineering in the United States, requires a set of learning outcomes (known as ABET a-k) to be regularly self-evaluated. Results of this self-evaluation is expected to be used to improve educational programs. As part of the effort to improve educational programs based on a self evaluation of an active learning model, this study investigates how creativity can be fostered among freshman engineering students as a result of exposing them to various creative problem solving exercises in an active, experiential, and team-based learning environment. An introductory course to engineering design at Texas A&M University was used to determine how creativity was promoted among students after completing the course. Established research findings in creativity studies were used to measure creativity both as a construct and a process among students. Qualitative approaches were used and the research design included extensive field observations, focus group interviews, student questionnaires, and portfolios assessments. Results of the study showed that the use of an experiential and team-based learning model in the freshman engineering design course enhanced both process-and construct-based creativity dimensions among students during the course of the study.
C1 [Aboukinane, Chehra] Inst Agron & Vet Med, Rabat, Morocco.
[Aboukinane, Chehra] El Akhawayn Univ, Ifrane, Morocco.
[Aboukinane, Chehra] Fairleigh Dickinson Univ, Vancouver, BC, Canada.
[Moriasi, Daniel N.] USDA ARS, Grazing Lands Res Lab, Washington, DC 20250 USA.
[Kenimer, Ann L.; Dooley, Kim; Linder, James] Texas A&M Univ, College Stn, TX 77843 USA.
RP Aboukinane, C (reprint author), Inst Agron & Vet Med, Rabat, Morocco.
NR 26
TC 0
Z9 0
U1 2
U2 2
PU AMER SOC ENGINEERING EDUCATION
PI WASHINGTON
PA 1818 N STREET, NW SUITE 600, WASHINGTON, DC 20036 USA
SN 2153-5965
J9 ASEE ANNU CONF EXPO
PY 2013
PG 25
WC Education & Educational Research; Education, Scientific Disciplines;
Engineering, Multidisciplinary
SC Education & Educational Research; Engineering
GA BE7HB
UT WOS:000375256306003
ER
PT S
AU Johannesen, L
Vicente, J
Galeotti, L
Strauss, DG
AF Johannesen, Lars
Vicente, Jose
Galeotti, Loriano
Strauss, David G.
GP IEEE
TI ECGlib: Library for Processing Electrocardiograms
SO 2013 COMPUTING IN CARDIOLOGY CONFERENCE (CINC)
SE Computing in Cardiology Conference
LA English
DT Proceedings Paper
CT 40th Annual Meeting on Computing in Cardiology (CinC)
CY SEP 22-25, 2013
CL Zaragoza, SPAIN
SP EMB, IEEE, PhysioNet, Mortara, Univ Inst Investigac Ingn Aragon, Univ Zaragoza, Philips, Escuela Ingn Arquitectura, Univ Zaragoza, GE Healthcare Life Sci, Cardiolund, Ciber-BBN, Centro Investigac Biomedica Red Bioingenieria, Biomateriales Nanomedicina, lOP Publishing, Zoll, Museo Ibercaja, Goya Zaragoza, ESC Working Grp, e-Cardiol, Unive Zaragoza, GTC, Commun Technologies Grp,, Unive Zaragoza, European Soc Cardiol
ID ANALYSIS SYSTEM; QT; RECORDINGS; ALGORITHMS; PATTERNS; DATABASE; SAFETY
AB To facilitate evaluation of ECGs in the FDA ECG Warehouse, public databases and clinical trials we have developed a C++ library for processing ECGs (ECGlib). ECGlib has a modular design, and is capable of handling files stored in many different formats, e.g. ISHNE, Physionet and FDA HL7. Moreover, ECGlib provides functions to do standard ECG signal processing, such as noise removal, QRS detection, classification, median beat creation and ECG waveform delineation. The performance of the different components of ECGlib has been evaluated using publicly available databases from Physionet (MIT-BIH and QTDB). The performance of ECGlib processing methodologies is comparable to state-of-the-art methods. We have also developed a MATLAB/Octave interface for ECGlib and are working on an interface for Python, R and Julia. Lastly, ECGlib comes with a set of command line tools that utilize parallel processing to quickly enable researchers to process large databases. We believe frameworks such as the one described can be used to facilitate research of ECG signals and we are working on making the library publicly available under an open source license.
C1 [Johannesen, Lars] USDA, Div Pharmacometr, Off Clin Pharmacol, Off Translat Sci,Ctr Drug Evaluat & Res, Washington, DC USA.
[Johannesen, Lars] Karolinska Inst, Dept Clin Physiol, S-10401 Stockholm, Sweden.
[Johannesen, Lars] Karolinska Univ Hosp, Stockholm, Sweden.
[Vicente, Jose; Galeotti, Loriano; Strauss, David G.] USDA, Div Phys, Off Sci & Engn Labs, Ctr Devices & Radiol Hlth, Washington, DC USA.
RP Johannesen, L (reprint author), 10903 New Hampshire Ave,Bldg 62 RM2127E, Silver Spring, MD 20910 USA.
EM lars.johannesen@fda.hhs.gov
RI GALEOTTI, LORIANO/N-4240-2014
OI GALEOTTI, LORIANO/0000-0002-3200-9080
NR 25
TC 8
Z9 8
U1 0
U2 0
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 2325-887X
BN 978-1-4799-0884-4
J9 COMPUT CARDIOL CONF
PY 2013
VL 40
BP 951
EP 954
PG 4
WC Computer Science, Interdisciplinary Applications; Engineering,
Multidisciplinary; Engineering, Biomedical
SC Computer Science; Engineering
GA BC1AL
UT WOS:000349898700240
ER
PT S
AU Wang, LY
Ware, D
Merchant, N
Lushbough, C
AF Wang, Liya
Ware, Doreen
Merchant, Nirav
Lushbough, Carol
GP IEEE
TI Building an open Genome Wide Association Study (GWAS) platform
SO 2013 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING (CLUSTER)
SE IEEE International Conference on Cluster Computing
LA English
DT Proceedings Paper
CT 15th IEEE International Conference on Cluster Computing (CLUSTER)
CY SEP 23-27, 2013
CL Indianapolis, IN
SP IEEE, Cray Inc, Data Direct Networks, IBM Inc, Matrix Integrat Hewlett Packard, Indiana Univ Pervas Technol Inst, Natl Ctr Genome Anal Support, Case Western Reserve Univ, Univ Chicago Res Comp Ctr, Clemson Univ, Georgia Tech Informat Technol, Univ Miami Ctr Computat Sci, Mississippi State Univ, Univ Notre Dame, San Diego Supercomputer Center
DE GWAS; iPlant Data Store; iPlant Foundation API; iPlant Discovery
Environment; BioExtract server
ID MODEL APPROACH; POPULATION
AB We demonstrated how a flexible Genome Wide Association Study (GWAS) platform was built using the iPlant Collaborative Cyber-infrastructure. The platform is open for end users to add additional analysis tools. With the platform, customized GWAS workflows can be built in both iPlant Discovery Environment and BioExtract server.
C1 [Wang, Liya; Ware, Doreen] iPlant Collaborat, Cold Spring Harbor, NY 11724 USA.
[Ware, Doreen] USDA ARS, Cold Spring Harbor, NY 11724 USA.
[Ware, Doreen] Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA.
[Merchant, Nirav] Univ Arizona, iPlant Collaborat, Tucson, AZ 85721 USA.
[Lushbough, Carol] Univ S Dakota, Vermillion, SD 57069 USA.
RP Wang, LY (reprint author), iPlant Collaborat, Cold Spring Harbor, NY 11724 USA.
EM wangli@cshl.edu; ware@cshl.edu; nirav@iplantcollaborative.org;
Carol.Lushbough@usd.edu
FU National Science Foundation [DBI-0735191]; USDA-ARS
FX This work is supported by the National Science Foundation Plant
Cyber-infrastructure Program (#DBI-0735191) and USDA-ARS.
NR 14
TC 0
Z9 0
U1 0
U2 0
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 1552-5244
BN 978-1-4799-0898-1
J9 IEEE INT C CL COMP
PY 2013
PG 4
WC Computer Science, Hardware & Architecture; Computer Science, Theory &
Methods
SC Computer Science
GA BC0OA
UT WOS:000349249800092
ER
PT S
AU Yueh, S
Tang, WQ
Fore, A
Hayashi, JCA
Lagerloef, G
Jackson, T
Bindlish, R
AF Yueh, Simon
Tang, Wenqing
Fore, Alexander
Hayashi, Julian Chaubell Akiko
Lagerloef, Gary
Jackson, Thomas
Bindlish, Rajat
GP IEEE
TI AQUARIUS SALINITY AND WIND RETRIEVAL USING THE CAP ALGORITHM AND
APPLICATION TO WATER CYCLE OBSERVATION IN THE INDIAN OCEAN AND
SUBCONTINENT
SO 2013 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS)
SE IEEE International Symposium on Geoscience and Remote Sensing IGARSS
LA English
DT Proceedings Paper
CT IEEE International Geoscience and Remote Sensing Symposium (IGARSS)
CY JUL 21-26, 2013
CL Melbourne, AUSTRALIA
SP IEEE, Inst Elect & Elect Engineers, Geoscience & Remote Sensing Soc
C1 [Yueh, Simon; Tang, Wenqing; Fore, Alexander; Hayashi, Julian Chaubell Akiko; Jackson, Thomas] CALTECH, Jet Prop Lab, Pasadena, CA 91125 USA.
[Lagerloef, Gary] Earth & Space Res, Seattle, WA 98121 USA.
[Bindlish, Rajat] USDA ARS, Washington, DC 20250 USA.
RP Yueh, S (reprint author), CALTECH, Jet Prop Lab, Pasadena, CA 91125 USA.
FU National Aeronautics and Space Administration
FX The work described in this paper was carried out by the Jet Propulsion
Laboratory, California Institute of Technology under a contract with the
National Aeronautics and Space Administration. USDA is an equal
opportunity provider and employer.
NR 3
TC 0
Z9 0
U1 0
U2 0
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 2153-6996
BN 978-1-4799-1114-1
J9 INT GEOSCI REMOTE SE
PY 2013
BP 1790
EP 1793
DI 10.1109/IGARSS.2013.6723146
PG 4
WC Engineering, Electrical & Electronic; Geosciences, Multidisciplinary;
Remote Sensing
SC Engineering; Geology; Remote Sensing
GA BB7JO
UT WOS:000345638901227
ER
PT S
AU Kim, Y
Hong, S
Lee, K
Jackson, T
Bindlish, R
Jung, G
Jang, S
Na, S
AF Kim, Yihyun
Hong, Sukyoung
Lee, Kyoungdo
Jackson, Thomas
Bindlish, Rajat
Jung, Gunho
Jang, Soyeong
Na, Sangil
GP IEEE
TI ESTIMATING WHEAT GROWTH FOR RADAR VEGETATATION INDICES
SO 2013 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS)
SE IEEE International Symposium on Geoscience and Remote Sensing IGARSS
LA English
DT Proceedings Paper
CT IEEE International Geoscience and Remote Sensing Symposium (IGARSS)
CY JUL 21-26, 2013
CL Melbourne, AUSTRALIA
SP IEEE, Inst Elect & Elect Engineers, Geoscience & Remote Sensing Soc
DE Radar vegetation index; wheat; L-band; C-band; X-band; growth parameters
ID RICE
AB In this study, we computed the Radar Vegetation Index (RVI) using observations made with a ground based multi-frequency polarimetric scatterometer system over an entire wheat growth period. The temporal variations of the backscattering coefficients for L-, C-, and X-band, RVI, Vegetation water content (VWC), and fresh weight were analyzed. We found that the L-band RVI was very sensitive to VWC and fresh weight. Based on the correlation analysis between RVI and these growth parameters, we developed equations for estimation VWC and fresh weight.
C1 [Kim, Yihyun; Hong, Sukyoung; Lee, Kyoungdo; Jang, Soyeong; Na, Sangil] Natl Acad Agr Sci, Rural Dev Adm, Suwon, South Korea.
[Jackson, Thomas; Bindlish, Rajat] USDA, Agr Res Serv, Hydrol & Remote Sensing Lab, Solomons, MD USA.
[Jung, Gunho] Natl Inst Crop Sci NICS, Rural Dev Adm, Suwon, South Korea.
RP Kim, Y (reprint author), Natl Acad Agr Sci, Rural Dev Adm, Suwon, South Korea.
EM yhkim75@korea.kr; syhong67@korea.kr; kdlee11@korea.kr;
thomas.jackson@ars.usda.gov; Rajat.Bindlish@ars.usda.gov;
ideaway@korea.kr; tldrkfjqm@hanmail.net; sangil917@korea.kr
NR 7
TC 1
Z9 1
U1 0
U2 0
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 2153-6996
BN 978-1-4799-1114-1
J9 INT GEOSCI REMOTE SE
PY 2013
BP 3219
EP 3222
DI 10.1109/IGARSS.2013.6723512
PG 4
WC Engineering, Electrical & Electronic; Geosciences, Multidisciplinary;
Remote Sensing
SC Engineering; Geology; Remote Sensing
GA BB7JO
UT WOS:000345638903073
ER
PT S
AU Galloza, MS
Engel, B
Crawford, M
Heathman, G
Williams, JR
AF Galloza, M. S.
Engel, B.
Crawford, M.
Heathman, G.
Williams, J. R.
GP IEEE
TI APPLICATION OF REMOTE SENSING OBSERVATIONS AS APEX MODEL INPUT FOR
ESTIMATING SOIL EROSION
SO 2013 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS)
SE IEEE International Symposium on Geoscience and Remote Sensing IGARSS
LA English
DT Proceedings Paper
CT IEEE International Geoscience and Remote Sensing Symposium (IGARSS)
CY JUL 21-26, 2013
CL Melbourne, AUSTRALIA
SP IEEE, Inst Elect & Elect Engineers, Geoscience & Remote Sensing Soc
C1 [Galloza, M. S.] Purdue Univ, Sch Civil Engn, W Lafayette, IN 47907 USA.
[Engel, B.] Purdue Univ, Agr & Biolog Engn, W Lafayette, IN 47907 USA.
[Crawford, M.] Purdue Univ, Lab Applicat Remote Sensing, W Lafayette, IN 47907 USA.
[Heathman, G.] USDA, ARS Natl Soil Eros Res Lab, W Lafayette, IN 47907 USA.
[Williams, J. R.] Texas Agr Expt Stn, Blackland Res & Extens Ctr, Temple, TX 76502 USA.
RP Galloza, MS (reprint author), Purdue Univ, Sch Civil Engn, W Lafayette, IN 47907 USA.
NR 5
TC 0
Z9 0
U1 0
U2 0
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 2153-6996
BN 978-1-4799-1114-1
J9 INT GEOSCI REMOTE SE
PY 2013
BP 3261
EP 3264
DI 10.1109/IGARSS.2013.6723523
PG 4
WC Engineering, Electrical & Electronic; Geosciences, Multidisciplinary;
Remote Sensing
SC Engineering; Geology; Remote Sensing
GA BB7JO
UT WOS:000345638903084
ER
PT S
AU Yang, ZW
Yu, GN
Di, LP
Zhang, B
Han, WG
Mueller, R
AF Yang, Zhengwei
Yu, Genong (Eugene)
Di, Liping
Zhang, Bei
Han, Weiguo
Mueller, Rick
GP IEEE
TI WEB SERVICE-BASED VEGETATION CONDITION MONITORING SYSTEM - VEGSCAPE
SO 2013 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS)
SE IEEE International Symposium on Geoscience and Remote Sensing IGARSS
LA English
DT Proceedings Paper
CT IEEE International Geoscience and Remote Sensing Symposium (IGARSS)
CY JUL 21-26, 2013
CL Melbourne, AUSTRALIA
SP IEEE, Inst Elect & Elect Engineers, Geoscience & Remote Sensing Soc
DE VegScape; vegetation condition monitoring; Web service; MODIS; online
vegetation analytics
AB Timely, frequent, high resolution, fully geospatial covered crop vegetation condition information throughout the season is critical to decision making in both public and private sectors that concern agricultural policy, production, food security, and food prices. This paper presents a new interactive Web service-based vegetation condition monitoring system - VegScape. This system automatically obtains and preprocesses near real-time 250m MODIS daily surface reflectance data for better spatial and temporal resolutions, and generates geospatially various vegetation condition indices for timely crop condition. The VegScape not only offers the online interactive map operations, data dissemination, crop condition statistics, charting and graphing, and comparison analysis, but also provides Web services such on-demand vegetation condition maps and statistics for uses in other applications. This system delivers dynamic user experiences and geospatial crop condition information for decision support with its comprehensive capabilities through standard geospatial Web services in a publicly accessible online environment.
C1 [Yang, Zhengwei; Mueller, Rick] Natl Agr Stat Serv, USDA, Fairfax, VA 22030 USA.
[Yang, Zhengwei; Yu, Genong (Eugene); Di, Liping; Zhang, Bei; Han, Weiguo] George Mason Univ, Ctr Spatial Informat Sci Syst, Fairfax, VA 22032 USA.
RP Yang, ZW (reprint author), Natl Agr Stat Serv, USDA, Fairfax, VA 22030 USA.
RI Han, Weiguo/N-1791-2014
OI Han, Weiguo/0000-0002-2760-0909
NR 5
TC 1
Z9 1
U1 0
U2 1
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 2153-6996
BN 978-1-4799-1114-1
J9 INT GEOSCI REMOTE SE
PY 2013
BP 3638
EP 3641
DI 10.1109/IGARSS.2013.6723618
PG 4
WC Engineering, Electrical & Electronic; Geosciences, Multidisciplinary;
Remote Sensing
SC Engineering; Geology; Remote Sensing
GA BB7JO
UT WOS:000345638903178
ER
PT S
AU Yang, ZW
Mueller, R
Crow, W
AF Yang, Zhengwei
Mueller, Rick
Crow, Wade
GP IEEE
TI US NATIONAL CROPLAND SOIL MOISTURE MONITORING USING SMAP
SO 2013 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS)
SE IEEE International Symposium on Geoscience and Remote Sensing IGARSS
LA English
DT Proceedings Paper
CT IEEE International Geoscience and Remote Sensing Symposium (IGARSS)
CY JUL 21-26, 2013
CL Melbourne, AUSTRALIA
SP IEEE, Inst Elect & Elect Engineers, Geoscience & Remote Sensing Soc
DE SMAP; soil moisture monitoring; crop condition monitoring; VegScape
AB This paper investigates at the pre-launch stage the feasibility of using NASA SMAP mission results for US national operational crop soil moisture monitoring. The purpose of using remote sensed SMAP data for crop soil moisture monitoring is to eliminate data collection subjectivity, reduce cost, increase cropland soil moisture monitoring data consistency, and operational efficiency. In this paper, the SMAP simulated data product time series, such as L2_SM_A, L3_SM_A/P, L4_SM, LIC-S0_HiRes are first evaluated for their suitability for NASS operational cropland soil moisture monitoring by comparing SMAP results with the NASS' survey based weekly soil moisture observation data for their consistency and robustness. The preliminary results illustrate that SMAP products have the potential for NASS operational use at least for county level soil moisture statistics. This paper also explores a technical route to build a Web-service based interactive soil moisture monitoring system for map visualization, dissemination, and analysis based on SMAP results.
C1 [Yang, Zhengwei; Mueller, Rick] Natl Agr Stat Serv, USDA, Fairfax, VA 22030 USA.
[Crow, Wade] USDA, Hydrol & Remote Sensing Lab, Agr Res Serv, Beltsville, MD 20705 USA.
RP Yang, ZW (reprint author), Natl Agr Stat Serv, USDA, Fairfax, VA 22030 USA.
NR 11
TC 0
Z9 0
U1 0
U2 2
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 2153-6996
BN 978-1-4799-1114-1
J9 INT GEOSCI REMOTE SE
PY 2013
BP 3746
EP 3749
DI 10.1109/IGARSS.2013.6723645
PG 4
WC Engineering, Electrical & Electronic; Geosciences, Multidisciplinary;
Remote Sensing
SC Engineering; Geology; Remote Sensing
GA BB7JO
UT WOS:000345638903204
ER
PT S
AU Boryan, CG
Yang, ZW
AF Boryan, Claire G.
Yang, Zhengwei
GP IEEE
TI DERIVING CROP SPECIFIC COVARIATE DATA SETS FROM MULTI-YEAR NASS
GEOSPATIAL CROPLAND DATA LAYERS
SO 2013 IEEE INTERNATIONAL GEOSCIENCE AND REMOTE SENSING SYMPOSIUM (IGARSS)
SE IEEE International Symposium on Geoscience and Remote Sensing IGARSS
LA English
DT Proceedings Paper
CT IEEE International Geoscience and Remote Sensing Symposium (IGARSS)
CY JUL 21-26, 2013
CL Melbourne, AUSTRALIA
SP IEEE, Inst Elect & Elect Engineers, Geoscience & Remote Sensing Soc
DE Cropland Data Layer; crop covariate data; stratification; area sampling
frame
AB The National Agricultural Statistics Service (NASS) Area Sampling Frames (ASFs) are based on the stratification of US land cover by percent cultivation. Recently, an automated stratification method based on the NASS Cropland Data Layer (CDL) was developed to efficiently and objectively stratify US land cover. This method achieved higher accuracies in all cultivated strata with statistical significance at a 95% confidence level. This paper proposed to develop crop specific covariate data based on 2007 - 2010 CDLs. Crop (corn, soybeans, wheat and cotton) and non crop (forest, urban and water) covariate data were derived and validated for six states. Producer and user accuracies for the covariate data sets were based on independent 2011 Farm Service Agency Common Land Unit data and 2011 CDLs. Non crop covariate data were validated using the National Land Cover Data 2006. Covariate data were used within NASS to conduct substratification of the 2013 Oklahoma ASF.
C1 [Boryan, Claire G.; Yang, Zhengwei] Natl Agr Stat Serv, USDA, Fairfax, VA 22030 USA.
RP Boryan, CG (reprint author), Natl Agr Stat Serv, USDA, 3521 Old Lee Highway,Room 305, Fairfax, VA 22030 USA.
EM Claire.Boryan@nass.usda.gov
NR 7
TC 1
Z9 1
U1 0
U2 0
PU IEEE
PI NEW YORK
PA 345 E 47TH ST, NEW YORK, NY 10017 USA
SN 2153-6996
BN 978-1-4799-1114-1
J9 INT GEOSCI REMOTE SE
PY 2013
BP 4225
EP 4228
DI 10.1109/IGARSS.2013.6723766
PG 4
WC Engineering, Electrical & Electronic; Geosciences, Multidisciplinary;
Remote Sensing
SC Engineering; Geology; Remote Sensing
GA BB7JO
UT WOS:000345638904068
ER
PT J
AU Simpson, CC
Katurji, M
Kiefer, MT
Zhong, SY
Charney, JJ
Heilman, WE
Bian, XD
AF Simpson, Colin C.
Katurji, Marwan
Kiefer, Michael T.
Zhong, Shiyuan
Charney, Joseph J.
Heilman, Warren E.
Bian, Xindi
BE Piantadosi, J
Anderssen, RS
Boland, J
TI Atmosphere-fire simulation of effects of low-level jets on
pyro-convective plume dynamics
SO 20TH INTERNATIONAL CONGRESS ON MODELLING AND SIMULATION (MODSIM2013)
LA English
DT Proceedings Paper
CT 20th International Congress on Modelling and Simulation (MODSIM)
CY DEC 01-06, 2013
CL Adelaide, AUSTRALIA
SP CSIRO, Univ S Australia, Ctr Ind & Appl Math, Australian Govt, Bur Meteorol, GOYDER Inst, Govt S Australia, Australian Math Soc, Australian Math Sci Inst, Simulat Australia, Australian & New Zealand Ind & Appl Math
DE Blow-up fire behaviour; atmosphere-fire numerical modelling;
pyro-convective plume dynamics
ID MODEL
AB Blow-up fire behaviour can be broadly defined as a rapid escalation in the intensity or forward rate of spread of a wildland fire, and is often accompanied by extreme pyro-convection associated with rapid smoke release and dispersion. Blow-up fire behaviour is difficult to predict and has been linked to firefighter fatalities, making it an important fire management hazard. Byram (1954) compiled the first observational dataset of categorised wind speed and direction profiles associated with blow-up fire behaviour. Low-level jets, varying in height between 30 and 1000 m above ground level (AGL), are a common feature in Byram's wind-profile types. Additional studies have qualitatively discussed how low-level jets can influence wildland fire behaviour and pyro-convective plume dynamics. However, there has been little quantitative testing and analysis of the physical processes linking low-level jets and blow-up fire behaviour.
The principle aim of this study was to use the Advanced Regional Prediction System (ARPS) at high-resolution, with a 50 m horizontal grid spacing, to numerically simulate the sensitivity of the downwind pyro-convective plume dynamics to four of the Byram wind-profile types. The Byram wind profiles tested each contain a low-level jet with different properties. A moderate-intensity grass fire was prescribed in the ARPS model domain using a constant surface sensible heat flux of 30 kW m(-2) in a 150 x 2500 m rectangle oriented normal to the prevailing wind.
The numerical simulation results indicated that the fire-related atmospheric conditions and large-scale pyro-convective plume structure were sensitive to changes in the low-level jet properties, i.e. wind shear above the jet and the jet height and intensity. However, despite this sensitivity there were some common features in the four numerical simulations. A triangular-shaped fire-perturbed warm air region developed close to the surface downwind of, and extending from, the steady-state parameterized fire. This warm air region was confined spatially by cross-wind inflows that developed due to an interaction of the background winds with the edges of the fire. The horizontal convergence of these cross-wind inflows downwind of the fire marked the starting location of the fire plume. There were considerable updrafts and downdrafts throughout the model domain associated with the pyro-convection.
The heating of air up to several kilometres downwind of the fire would act to preheat fuels, resulting in increased fuel flammability and therefore an enhanced rate of forward fire spread. Additionally, the atmospheric turbulence directly over this warm air region and the updrafts and downdrafts associated with the fire plume would affect the transportation of firebrands downwind of the fire. The downwind transportation of firebrands can ignite spot fires, which enhance the forward rate of fire spread as the spot fires grow and merge with the existing fire front. Through these mechanisms the low-level jet wind profiles can be directly linked with blow-up fire behaviour.
The numerical simulations performed with ARPS were highly idealised and therefore subject to a number of limitations. For example, temporal variations in the prescribed fire intensity and shape, directional wind shear, background turbulence and moist processes were not modelled in this study. However, future work will gradually address these limitations through further numerical simulations using both ARPS and a coupled atmosphere-fire model.
C1 [Simpson, Colin C.] Univ New S Wales, Sch Phys Environm & Math Sci, Canberra, ACT, Australia.
[Simpson, Colin C.; Katurji, Marwan] Univ Canterbury, Ctr Atmospher Res, Christchurch 1, New Zealand.
[Katurji, Marwan; Kiefer, Michael T.; Zhong, Shiyuan] Michigan State Univ, Dept Geog, E Lansing, MI 48824 USA.
[Charney, Joseph J.; Heilman, Warren E.; Bian, Xindi] USDA Forest Serv, No Res Stn, E Lansing, MI USA.
RP Simpson, CC (reprint author), Univ New S Wales, Sch Phys Environm & Math Sci, Canberra, ACT, Australia.
EM c.simpson@adfa.edu.au
NR 21
TC 0
Z9 0
U1 0
U2 1
PU MODELLING & SIMULATION SOC AUSTRALIA & NEW ZEALAND INC
PI CHRISTCHURCH
PA MSSANZ, CHRISTCHURCH, 00000, NEW ZEALAND
BN 978-0-9872143-3-1
PY 2013
BP 270
EP 276
PG 7
WC Computer Science, Interdisciplinary Applications; Operations Research &
Management Science; Mathematics, Interdisciplinary Applications
SC Computer Science; Operations Research & Management Science; Mathematics
GA BD0EH
UT WOS:000357105900040
ER
PT J
AU Alvarez-Garreton, C
Ryu, D
Western, AW
Crow, W
Robertson, D
AF Alvarez-Garreton, C.
Ryu, D.
Western, A. W.
Crow, W.
Robertson, D.
BE Piantadosi, J
Anderssen, RS
Boland, J
TI Impact of observation error structure on satellite soil moisture
assimilation into a rainfall-runoff model
SO 20TH INTERNATIONAL CONGRESS ON MODELLING AND SIMULATION (MODSIM2013)
LA English
DT Proceedings Paper
CT 20th International Congress on Modelling and Simulation (MODSIM)
CY DEC 01-06, 2013
CL Adelaide, AUSTRALIA
SP CSIRO, Univ S Australia, Ctr Ind & Appl Math, Australian Govt, Bur Meteorol, GOYDER Inst, Govt S Australia, Australian Math Soc, Australian Math Sci Inst, Simulat Australia, Australian & New Zealand Ind & Appl Math
DE Data assimilation; soil moisture; satellite retrievals; rainfall-runoff
model; hydrology
ID SURFACE
AB In the Ensemble Kalman Filter (EnKF) - based data assimilation, the background prediction of a model is updated using observations and relative weights based on the model prediction and observation uncertainties. In practice, both model and observation uncertainties are difficult to quantify thus have been often assumed to be spatially and temporally independent Gaussian random variables. Nevertheless, it has been shown that incorrect assumptions regarding the structure of these errors can degrade the performance of the stochastic data assimilation.
This work investigates the autocorrelation structure of the microwave satellite soil moisture retrievals and explores how assumed observation error structure affects streamflow prediction skill when assimilating these observations into a rainfall-runoff model. An AMSR-E soil moisture product and the Probability Distribution Model (PDM) are used for this purpose.
Satellite soil moisture data is transformed with an exponential filter to make it comparable to the root zone soil moisture state of the model. The exponential filter formulation explicitly incorporates an autocorrelation component in the rescaled observation, however, the error structure of this operator has been treated until now as an independent Gaussian process. In this work, the variance of the rescaled observation error is estimated based on the residuals from the rescaled satellite soil moisture and the calibrated model soil moisture state. Next, the observation error structure is treated as a Gaussian independent process with time-variant variance; a weakly autocorrelated random process (with autocorrelation coefficient of 0.2) and a strongly autocorrelated random process (with autocorrelation coefficient of 0.8). These experiments are compared with a control case which corresponds to the commonly used assumption of Gaussian independent observation error with time-fixed variance.
Model error is represented by perturbing rainfall forcing data and soil moisture state. These perturbations are assumed to represent all forcing and model structural/parameter errors. Error parameters are calibrated by applying two discharge ensemble verification criteria. Assimilation results are compared and the impacts of the observation error structure assumptions are assessed.
The study area is the semi-arid 42,870 km(2) Warrego at Wyandra River catchment, located in Queensland, Australia. This catchment is chosen for its flooding history, along with having geographical and climatological conditions that enable soil moisture satellite retrievals to have higher accuracy than in other areas. These conditions include large area, semi-arid climate and low vegetation cover. Moreover, the catchment is poorly instrumented, thus satellite data provides valuable information.
Results show a consistent improvement of the model forecast accuracy of the control case and in all experiments. However, given that a stochastic assimilation is designed to correct stochastic errors, the systematic errors in model prediction (probably due to the inaccurate forcing data within the catchment) are not addressed by these experiments. The assumed observation error structures tested in the different experiments do not exhibit significant effect in the assimilation results. This case study provides useful insight into the assimilation of satellite soil moisture retrievals in poorly instrumented semi-arid catchments.
C1 [Alvarez-Garreton, C.; Ryu, D.; Western, A. W.] Univ Melbourne, Dept Infrastruct Engn, Parkville, Vic 3052, Australia.
[Crow, W.] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD USA.
[Robertson, D.] CSIRO Land & Water, Melbourne, Vic, Australia.
RP Alvarez-Garreton, C (reprint author), Univ Melbourne, Dept Infrastruct Engn, Parkville, Vic 3052, Australia.
EM calverez@student.unimelb.edu.au
RI Robertson, David/C-3643-2011; Western, Andrew/G-1730-2011
OI Robertson, David/0000-0003-4230-8006; Western,
Andrew/0000-0003-4982-146X
NR 16
TC 1
Z9 1
U1 1
U2 3
PU MODELLING & SIMULATION SOC AUSTRALIA & NEW ZEALAND INC
PI CHRISTCHURCH
PA MSSANZ, CHRISTCHURCH, 00000, NEW ZEALAND
BN 978-0-9872143-3-1
PY 2013
BP 3071
EP 3077
PG 7
WC Computer Science, Interdisciplinary Applications; Operations Research &
Management Science; Mathematics, Interdisciplinary Applications
SC Computer Science; Operations Research & Management Science; Mathematics
GA BD0EH
UT WOS:000357105903015
ER
PT J
AU Su, CH
Ryu, D
Western, AW
Crow, WT
Wagner, W
AF Su, Chun-Hsu
Ryu, Dongryeol
Western, Andrew W.
Crow, Wade T.
Wagner, Wolfgang
BE Piantadosi, J
Anderssen, RS
Boland, J
TI Error characterization of microwave satellite soil moisture data sets
using Fourier analysis
SO 20TH INTERNATIONAL CONGRESS ON MODELLING AND SIMULATION (MODSIM2013)
LA English
DT Proceedings Paper
CT 20th International Congress on Modelling and Simulation (MODSIM)
CY DEC 01-06, 2013
CL Adelaide, AUSTRALIA
SP CSIRO, Univ S Australia, Ctr Ind & Appl Math, Australian Govt, Bur Meteorol, GOYDER Inst, Govt S Australia, Australian Math Soc, Australian Math Sci Inst, Simulat Australia, Australian & New Zealand Ind & Appl Math
DE Soil moisture; Satellite remote sensing; error characterization; Fourier
analysis; triple collocation
ID TRIPLE COLLOCATION; PRECIPITATION; CALIBRATION; MODEL
AB Soil moisture is a key geophysical variable in hydrological and meteorological processes. Accurate and current observations of soil moisture over meso to global scales used as inputs to hydrological, weather and climate modelling will benefit the predictability and understanding of these processes. At present, satellite platforms are active in mapping global surface soil moisture jointly at sub-daily intervals and mesoscale resolutions. However to correctly interpret observed variations and assimilate them in hydrological and weather models, the error structures of the retrieved soil moisture data need to be better understood and characterised.
In this paper we investigate the utility of a recently proposed method to quantify the variance of stochastic noise in passive and active satellite soil moisture products. While it is typical to analyse the difference between satellite retrievals and ground truth in the time domain, this method is based on quantifying the differences between retrieved soil moisture and a standard water-balance equation in the conjugate Fourier domain. The method, which referred to as Spectral Fitting (SF), is applied to estimate the errors in passive and active retrievals over Australia (10-44 degrees South, 112-154 degrees East). In particular we consider the AMSR-E (Advanced Microwave Scanning Radiometer - Earth Observing System) LPRM (Land Parameter Retrieval Method), CATDS (Centre Aval de Traitement des Donnees SMOS) SMOS (Soil Salinity and Ocean Salinity), and TU-WIEN (Vienna University of Technology) ASCAT (Advanced Scatterometer) soil moisture products. The results are compared against the errors estimated using the standard method of triple collocation (TC) with AMSR-E, SMOS and ASCAT as the data triplet.
Our analyses show that the SF method is able to recover similar and reasonable error maps that reflect sensitivity of retrieval errors to land surface and climate characteristics over Australia. As expected, more vegetated and wetter areas are usually associated with higher errors. Additionally for SMOS and ASCAT, the dry cooler desert areas of southern Australia also show higher errors, in contrast to lower errors over the hotter dry desert of central Australia. The reverse is the case for AMSR-E. These patterns are also reflected in the spatial error maps of TC analysis and the direct comparisons of SF and TC estimates show moderate-to-good correlations: 0.64 for AMSR-E, 0.68 for SMOS, and 0.68 for ASCAT. However the SF yields lower estimates than TC at the high end of the range. On one hand, this is perhaps expected given rationale of the SF method to estimate only the stochastic/high-frequency components of the total errors. On the other hand, the simple error model and implementation of TC with non-coincident overpass times can also over-estimate the errors.
This work therefore presents an additional perspective on satellite soil moisture observation errors (in the Fourier domain) that may complement other error estimation approaches (in the time domain), thereby improving our understanding of the sources and types of errors.
C1 [Su, Chun-Hsu; Ryu, Dongryeol; Western, Andrew W.] Univ Melbourne, Dept Infrastruct Engn, Melbourne, Vic 3010, Australia.
[Crow, Wade T.] ARS, Hydrol & Remote Sensing Lab, USDA, Bethesda, MD USA.
[Wagner, Wolfgang] Vienna Univ Technol, Dept Geodesy & Geoinformat, A-1040 Vienna, Austria.
RP Su, CH (reprint author), Univ Melbourne, Dept Infrastruct Engn, Melbourne, Vic 3010, Australia.
EM csu@unimelb.edu.au
RI Western, Andrew/G-1730-2011
OI Western, Andrew/0000-0003-4982-146X
NR 18
TC 0
Z9 0
U1 1
U2 1
PU MODELLING & SIMULATION SOC AUSTRALIA & NEW ZEALAND INC
PI CHRISTCHURCH
PA MSSANZ, CHRISTCHURCH, 00000, NEW ZEALAND
BN 978-0-9872143-3-1
PY 2013
BP 3120
EP 3126
PG 7
WC Computer Science, Interdisciplinary Applications; Operations Research &
Management Science; Mathematics, Interdisciplinary Applications
SC Computer Science; Operations Research & Management Science; Mathematics
GA BD0EH
UT WOS:000357105903022
ER
PT J
AU Bassett, CL
AF Bassett, Carole L.
BE Vahdati, K
Leslie, C
TI Water Use and Drought Response in Cultivated and Wild Apples
SO ABIOTIC STRESS - PLANT RESPONSES AND APPLICATIONS IN AGRICULTURE
LA English
DT Article; Book Chapter
ID CARBON-ISOTOPE DISCRIMINATION; CIS-ACTING ELEMENT; X POPULUS-NIGRA;
PLANT PHYSIOLOGICAL TRAITS; REGULATED GENE-EXPRESSION; ALFALFA
MEDICAGO-SATIVA; BIRCH BETULA-PENDULA; ABSCISIC-ACID; USE EFFICIENCY;
ARABIDOPSIS-THALIANA
C1 ARS, USDA, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
RP Bassett, CL (reprint author), ARS, USDA, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
NR 98
TC 6
Z9 6
U1 0
U2 0
PU INTECH EUROPE
PI RIJEKA
PA JANEZA TRDINE9, RIJEKA, 51000, CROATIA
BN 978-953-51-1024-8
PY 2013
BP 249
EP 275
DI 10.5772/55537
D2 10.5772/45842
PG 27
WC Biochemistry & Molecular Biology; Plant Sciences
SC Biochemistry & Molecular Biology; Plant Sciences
GA BD1DG
UT WOS:000357944100009
ER
PT J
AU Showler, AT
AF Showler, Allan T.
BE Vahdati, K
Leslie, C
TI Water Deficit Stress - Host Plant Nutrient Accumulations and
Associations with Phytophagous Arthropods
SO ABIOTIC STRESS - PLANT RESPONSES AND APPLICATIONS IN AGRICULTURE
LA English
DT Article; Book Chapter
ID EOREUMA-LOFTINI LEPIDOPTERA; RICE BORER LEPIDOPTERA; EUROPEAN
CORN-BORER; BEET ARMYWORM LEPIDOPTERA; LEAF-FEEDING RESISTANCE; IMPORTED
FIRE ANT; FREE AMINO-ACIDS; DROUGHT STRESS; OVIPOSITION PREFERENCE;
BREVICORYNE-BRASSICAE
C1 ARS, USDA, Weslaco, TX 78596 USA.
RP Showler, AT (reprint author), ARS, USDA, Weslaco, TX 78596 USA.
EM Allan.Showler@ars.usda.gov
NR 157
TC 6
Z9 6
U1 0
U2 1
PU INTECH EUROPE
PI RIJEKA
PA JANEZA TRDINE9, RIJEKA, 51000, CROATIA
BN 978-953-51-1024-8
PY 2013
BP 387
EP 410
DI 10.5772/53125
D2 10.5772/45842
PG 24
WC Biochemistry & Molecular Biology; Plant Sciences
SC Biochemistry & Molecular Biology; Plant Sciences
GA BD1DG
UT WOS:000357944100013
ER
PT S
AU Isengildina-Massa, O
MacDonald, S
AF Isengildina-Massa, Olga
MacDonald, Stephen
BE Lawrence, KD
Klimberg, RK
TI FORECASTING US COTTON PRICES IN A CHANGING MARKET
SO ADVANCES IN BUSINESS AND MANAGEMENT FORECASTING, VOL 9
SE Advances in Business and Management Forecasting
LA English
DT Article; Book Chapter
DE Forecasting; cotton; price; supply; trade; structural change
ID FUTURES
AB The purpose of this study is to analyze structural changes that took place in the cotton industry and develop a statistical model that reflects the current drivers of U.S. upland cotton prices. This study concludes that a structural break in the U.S. cotton industry occurred in 1999, and that world cotton supply has become an important determinant of U.S. cotton prices. The model developed here forecasts changes in U.S. cotton price based on changes in U.S. cotton supply, changes in U.S. stocks-to-use ratio (S/U), changes in China's net imports as a share of world consumption, the proportion of U.S. cotton engaged in the loan program, and changes in world supply of cotton.
C1 [Isengildina-Massa, Olga] Univ Texas Arlington, Coll Business, Arlington, TX 76019 USA.
[MacDonald, Stephen] Econ Res Serv, USDA, Washington, DC USA.
RP Isengildina-Massa, O (reprint author), Univ Texas Arlington, Coll Business, Arlington, TX 76019 USA.
NR 34
TC 1
Z9 1
U1 0
U2 0
PU EMERALD GROUP PUBLISHING LTD
PI BINGLEY
PA HOWARD HOUSE, WAGON LANE, BINGLEY, W YORKSHIRE BD16 1WA, ENGLAND
SN 1477-4070
BN 978-1-78190-332-2; 978-1-78190-331-5
J9 ADV BUS MANAG FORECA
PY 2013
VL 9
BP 91
EP 113
DI 10.1108/S1477-4070(2013)0000009010
D2 10.1108/S1477-4070(2013)9
PG 23
WC Business; Management; Social Sciences, Mathematical Methods
SC Business & Economics; Mathematical Methods In Social Sciences
GA BE5MY
UT WOS:000373054000007
ER
PT B
AU Yang, CH
Lee, WS
AF Yang, Chenghai
Lee, Won Suk
BE Zhang, Q
Pierce, FJ
TI Precision Agricultural Systems
SO AGRICULTURAL AUTOMATION: FUNDAMENTALS AND PRACTICES
LA English
DT Article; Book Chapter
ID ON-THE-GO; RATE HERBICIDE APPLICATION; SOIL-MOISTURE CONTENT;
VARIABLE-RATE TECHNOLOGY; VIDEO IMAGING-SYSTEM; ORGANIC-MATTER;
REFLECTANCE SPECTROSCOPY; NIR SPECTROPHOTOMETER; ECONOMIC-FEASIBILITY;
NITROGEN-FERTILIZER
C1 [Yang, Chenghai] ARS, USDA, Southern Plains Agr Res Ctr, College Stn, TX 77845 USA.
[Lee, Won Suk] Univ Florida, Gainesville, FL USA.
RP Yang, CH (reprint author), ARS, USDA, Southern Plains Agr Res Ctr, College Stn, TX 77845 USA.
NR 164
TC 0
Z9 0
U1 0
U2 2
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-8058-6; 978-1-4398-8057-9
PY 2013
BP 63
EP 94
PG 32
WC Agriculture, Multidisciplinary; Agronomy; Computer Science,
Interdisciplinary Applications
SC Agriculture; Computer Science
GA BC2YK
UT WOS:000351452400005
ER
PT B
AU Sui, RX
Thomasson, JA
AF Sui, Ruixiu
Thomasson, J. Alex
BE Zhang, Q
Pierce, FJ
TI Mechanization, Sensing, and Control in Cotton Production
SO AGRICULTURAL AUTOMATION: FUNDAMENTALS AND PRACTICES
LA English
DT Article; Book Chapter
ID QUICKBIRD SATELLITE IMAGERY; NITROGEN STATUS; YIELD MONITOR;
MULTISPECTRAL SENSOR; WIRELESS TRACKING; REFLECTANCE; QUALITY; SYSTEM;
WATER; FIBER
C1 [Sui, Ruixiu] ARS, USDA, Crop Prod Syst Res Unit, Stoneville, MS 38776 USA.
[Thomasson, J. Alex] Texas A&M Univ, College Stn, TX USA.
RP Sui, RX (reprint author), ARS, USDA, Crop Prod Syst Res Unit, Stoneville, MS 38776 USA.
NR 92
TC 1
Z9 1
U1 1
U2 1
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-8058-6; 978-1-4398-8057-9
PY 2013
BP 125
EP 148
PG 24
WC Agriculture, Multidisciplinary; Agronomy; Computer Science,
Interdisciplinary Applications
SC Agriculture; Computer Science
GA BC2YK
UT WOS:000351452400007
ER
PT B
AU Purswell, JL
Gates, RS
AF Purswell, J. L.
Gates, R. S.
BE Zhang, Q
Pierce, FJ
TI Automation in Animal Housing and Production
SO AGRICULTURAL AUTOMATION: FUNDAMENTALS AND PRACTICES
LA English
DT Article; Book Chapter
ID THERMAL ENVIRONMENT; VENTILATION RATE; CONTROL-SYSTEMS; IMAGE-ANALYSIS;
ECONOMIC OPTIMIZATION; LIVESTOCK BUILDINGS; BROILER PRODUCTION;
AIR-TEMPERATURE; CLIMATE CONTROL; OPERANT CONTROL
C1 [Purswell, J. L.] Mississippi State Univ, USDA, ARS, Poultry Res Unit, Starkville, MS 39760 USA.
[Gates, R. S.] Univ Illinois, Urbana, IL 61801 USA.
RP Purswell, JL (reprint author), Mississippi State Univ, USDA, ARS, Poultry Res Unit, Starkville, MS 39760 USA.
NR 110
TC 1
Z9 1
U1 1
U2 1
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-8058-6; 978-1-4398-8057-9
PY 2013
BP 205
EP 230
PG 26
WC Agriculture, Multidisciplinary; Agronomy; Computer Science,
Interdisciplinary Applications
SC Agriculture; Computer Science
GA BC2YK
UT WOS:000351452400009
ER
PT B
AU Wang, D
O'Shaughnessy, SA
King, B
AF Wang, Dong
O'Shaughnessy, Susan A.
King, Bradley
BE Zhang, Q
Pierce, FJ
TI Automated Irrigation Management with Soil and Canopy Sensing
SO AGRICULTURAL AUTOMATION: FUNDAMENTALS AND PRACTICES
LA English
DT Article; Book Chapter
ID TIME-DOMAIN REFLECTOMETRY; WIRELESS SENSOR NETWORKS; SITE-SPECIFIC
MANAGEMENT; CROP COEFFICIENTS; PRECISION AGRICULTURE; USE EFFICIENCY;
WATER-STRESS; CHEMICAL APPLICATION; CONTROL-SYSTEM; WINTER-WHEAT
C1 [Wang, Dong] ARS, USDA, Water Management Res Lab, Parlier, CA 93648 USA.
[O'Shaughnessy, Susan A.] ARS, USDA, Conservat & Prod Lab, Bushland, TX USA.
[King, Bradley] ARS, USDA, Northwest Irrigat & Soils Res Lab, Kimberly, ID USA.
RP Wang, D (reprint author), ARS, USDA, Water Management Res Lab, Parlier, CA 93648 USA.
NR 113
TC 0
Z9 0
U1 1
U2 1
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-8058-6; 978-1-4398-8057-9
PY 2013
BP 295
EP 321
PG 27
WC Agriculture, Multidisciplinary; Agronomy; Computer Science,
Interdisciplinary Applications
SC Agriculture; Computer Science
GA BC2YK
UT WOS:000351452400012
ER
PT J
AU Schuster, GU
Bratt, JM
Jiang, X
Pedersen, TL
Grapov, D
Adkins, Y
Kelley, DS
Newman, JW
Kenyon, NJ
Stephensen, CB
AF Schuster, G. U.
Bratt, J. M.
Jiang, X.
Pedersen, T. L.
Grapov, D.
Adkins, Y.
Kelley, D. S.
Newman, J. W.
Kenyon, N. J.
Stephensen, C. B.
TI Dietary Docosahexaenoic Acid But Not Eicosapentaenoic Acid Exacerbates
Eosinophilic Pulmonary Inflammation In A Mouse Model Of Asthma
SO AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE
LA English
DT Meeting Abstract
C1 [Schuster, G. U.; Bratt, J. M.; Kelley, D. S.; Newman, J. W.; Kenyon, N. J.; Stephensen, C. B.] Univ Calif Davis, Davis, CA USA.
[Schuster, G. U.; Jiang, X.; Pedersen, T. L.; Grapov, D.; Adkins, Y.; Kelley, D. S.; Newman, J. W.; Stephensen, C. B.] USDA, WHNRC, Davis, CA USA.
EM gschuster@ucdavis.edu
NR 0
TC 0
Z9 0
U1 0
U2 0
PU AMER THORACIC SOC
PI NEW YORK
PA 25 BROADWAY, 18 FL, NEW YORK, NY 10004 USA
SN 1073-449X
EI 1535-4970
J9 AM J RESP CRIT CARE
JI Am. J. Respir. Crit. Care Med.
PY 2013
VL 187
MA A2672
PG 1
WC Critical Care Medicine; Respiratory System
SC General & Internal Medicine; Respiratory System
GA V45TO
UT WOS:000209839102062
ER
PT J
AU Dickinson, MB
Whigham, DF
AF Dickinson, M. B.
Whigham, D. F.
TI Competition among surface roots in a selectively-logged, semi-deciduous
forest in southeastern Mexico - effects on seedlings of two species of
contrasting shade tolerance
SO CARIBBEAN JOURNAL OF SCIENCE
LA English
DT Article
DE Brosimum alicastrum; Swietenia macrophylla; trenching; regeneration
AB Experimental manipulations of root competition on naturally established seedlings were conducted across canopy openness and soil depth gradients in a selectively-logged, semideciduous forest on limestone-derived soils in southeastern Mexico. We studied the relatively shade intolerant mahogany (Swietenia macrophylla, Meliaceae) and shade tolerant ramon (Brosimum alicastrum, Moraceae). Both species are ecologically and economically important canopy trees that respond differently to selective logging, hurricanes, and fires on the Yucatan Peninsula. The canopy openness gradient used in the experiment was created by low-intensity selective logging operations. The responses of naturally occurring seedlings of both species growing within 20-30 cm deep circular trenches were examined over a 19-month experimental period. Trenching resulted in increased relative growth in diameter, stem length, and number of leaves of Swietenia compared with controls, but had no effect on Brosimum relative growth or on seedling survival of either species. There was no significant interaction between increased light availability and trenching on Swietenia seedlings, perhaps because of their larger size in gaps. Trenching effects on Swietenia were not greater during the dry season, suggesting that surface trenching affected growth during transitions between seasons. Contrasting responses of Swietenia and Brosimum seedlings to changes in soil and light environments point to the need for diversity in silvicultural practices in seasonally-dry tropical forests such as the community-managed forest examined in this study.
C1 [Dickinson, M. B.] US Forest Serv, No Res Stn, Forestry Sci Lab, Delaware, OH 43015 USA.
[Whigham, D. F.] Smithsonian Environm Res Ctr, Edgewater, MD 21037 USA.
RP Dickinson, MB (reprint author), US Forest Serv, No Res Stn, Forestry Sci Lab, Delaware, OH 43015 USA.
EM mbdickinson@fs.fed.us; whighamd@si.edu
FU Smithsonian Environmental Sciences Program, Tropical Research and
Development; Tropical Forest Management Trust; International Hardwood
Products Association; Sigma Xi; Florida State University; Hardwood
Plywood Manufacturers Association
FX Thanks to P. J. Grubb and anonymous reviewers for comments on the
manuscript, J. Stanovick and S. Duke for statistical assistance, J. D.
and J. Matias Martinez for help in the field, and the community of Noh
Bec for permission to work in their forest. Thanks to D. Simberloff, F.
E. Putz, and S. M. Herman for their ideas and the Acuerdo
Mexico-Alemania, particularly H. Flachsenberg and A. Arguelles, and the
Sociedad Civil de Productores Forestales de Quitana Roo for logistical
support. This work was supported by grants from the Smithsonian
Environmental Sciences Program, Tropical Research and Development,
Tropical Forest Management Trust, the International Hardwood Products
Association, Sigma Xi, Florida State University, and the Hardwood
Plywood Manufacturers Association.
NR 49
TC 0
Z9 0
U1 1
U2 3
PU UNIV PUERTO RICO,
PI MAYAGUEZ
PA COLLEGE ARTS SCIENCES, MAYAGUEZ, PR 00680 USA
SN 0008-6452
J9 CARIBB J SCI
JI Caribb. J. Sci.
PY 2013
VL 47
IS 2-3
BP 140
EP 152
PG 13
WC Biodiversity Conservation
SC Biodiversity & Conservation
GA V43YA
UT WOS:000209715500002
ER
PT S
AU Iskandar, AR
Wang, XD
AF Iskandar, Anita Ratnasari
Wang, Xiang-Dong
BE Sommerburg, O
Siems, W
Kraemer, K
TI Carotenoids and Vitamin A in Lung Cancer Prevention
SO CAROTENOIDS AND VITAMIN A IN TRANSLATIONAL MEDICINE
SE Oxidative Stress and Disease
LA English
DT Article; Book Chapter
ID TRANS-RETINOIC ACID; PHASE-II TRIAL; BRONCHIAL EPITHELIAL-CELLS;
RECEPTOR-BETA EXPRESSION; PLACEBO-CONTROLLED TRIAL; A/J MOUSE MODEL;
PLUS INTERFERON-ALPHA; SMOKE-EXPOSED FERRETS; 2ND PRIMARY TUMORS;
N-TERMINAL KINASE
C1 [Iskandar, Anita Ratnasari; Wang, Xiang-Dong] Tufts Univ, Human Nutr Res Ctr Aging, Jean Mayer US Dept Agr, Boston, MA 02111 USA.
RP Iskandar, AR (reprint author), Tufts Univ, Human Nutr Res Ctr Aging, Jean Mayer US Dept Agr, Boston, MA 02111 USA.
NR 176
TC 0
Z9 0
U1 1
U2 1
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
SN 2155-0255
BN 978-1-4398-5527-0; 978-1-4398-5526-3
J9 OXIDAT STRESS DIS
PY 2013
VL 33
BP 171
EP 202
D2 10.1201/b14569
PG 32
WC Integrative & Complementary Medicine; Nutrition & Dietetics
SC Integrative & Complementary Medicine; Nutrition & Dietetics
GA BC8DO
UT WOS:000355557200012
ER
PT S
AU Bytnerowicz, A
Fenn, M
McNulty, S
Yuan, FM
Pourmokhtarian, A
Driscoll, C
Meixner, T
AF Bytnerowicz, Andrzej
Fenn, Mark
McNulty, Steven
Yuan, Fengming
Pourmokhtarian, Afshin
Driscoll, Charles
Meixner, Tom
BE Matyssek, R
Clarke, N
Cudlin, P
Mikkelsen, TN
Tuovinen, JP
Wieser, G
Paoletti, E
TI Interactive Effects of Air Pollution and Climate Change on Forest
Ecosystems in the United States: Current Understanding and Future
Scenarios
SO CLIMATE CHANGE, AIR POLLUTION AND GLOBAL CHALLENGES: UNDERSTANDING AND
PERSPECTIVES FROM FOREST RESEARCH
SE Developments in Environmental Science
LA English
DT Article; Book Chapter
ID SAN-BERNARDINO MOUNTAINS; NORTHERN HARDWOOD FORESTS; MIXED-CONIFER
FORESTS; CRITICAL ACID LOADS; NITROGEN DEPOSITION; SURFACE OZONE;
TROPOSPHERIC OZONE; LAND-USE; SOUTHERN CALIFORNIA; LOWER STRATOSPHERE
C1 [Bytnerowicz, Andrzej; Fenn, Mark] US Forest Serv, USDA, Pacific Southwest Res Stn, Riverside, CA 92507 USA.
[McNulty, Steven] US Forest Serv, USDA, Raleigh, NC USA.
[Yuan, Fengming] Oak Ridge Natl Lab, C1imate Change Sci Inst, Oak Ridge, TN USA.
[Yuan, Fengming] Oak Ridge Natl Lab, Div Environm Sci, Oak Ridge, TN 37831 USA.
[Pourmokhtarian, Afshin; Driscoll, Charles] Syracuse Univ, Dept Civil & Environm Engn, Syracuse, NY 13244 USA.
[Meixner, Tom] Univ Arizona, Tucson, AZ USA.
RP Bytnerowicz, A (reprint author), US Forest Serv, USDA, Pacific Southwest Res Stn, Riverside, CA 92507 USA.
EM abytnerowicz@fs.fed.us
OI Driscoll, Charles/0000-0003-2692-2890
NR 90
TC 9
Z9 9
U1 1
U2 7
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA SARA BURGERHARTSTRAAT 25, PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1474-8177
BN 978-0-08-098349-3
J9 DEV ENVIRONM SCI
PY 2013
VL 13
BP 333
EP 369
DI 10.1016/B978-0-08-098344-3.00016-5
PG 37
WC Ecology; Environmental Sciences; Forestry
SC Environmental Sciences & Ecology; Forestry
GA BD2LY
UT WOS:000358894200017
ER
PT J
AU Hugelius, G
Bockheim, JG
Camill, P
Elberling, B
Grosse, G
Harden, JW
Johnson, K
Jorgenson, T
Koven, CD
Kuhry, P
Michaelson, G
Mishra, U
Palmtag, J
Ping, CL
O'Donnell, J
Schirrmeister, L
Schuur, EAG
Sheng, Y
Smith, LC
Strauss, J
Yu, Z
AF Hugelius, G.
Bockheim, J. G.
Camill, P.
Elberling, B.
Grosse, G.
Harden, J. W.
Johnson, K.
Jorgenson, T.
Koven, C. D.
Kuhry, P.
Michaelson, G.
Mishra, U.
Palmtag, J.
Ping, C. -L.
O'Donnell, J.
Schirrmeister, L.
Schuur, E. A. G.
Sheng, Y.
Smith, L. C.
Strauss, J.
Yu, Z.
TI A new data set for estimating organic carbon storage to 3m depth in
soils of the northern circumpolar permafrost region
SO EARTH SYSTEM SCIENCE DATA
LA English
DT Article
ID CLIMATE-CHANGE; SIBERIAN PEATLANDS; ALASKA; CYCLE; VULNERABILITY;
SENSITIVITY; BUDGET
AB High-latitude terrestrial ecosystems are key components in the global carbon cycle. The Northern Circumpolar Soil Carbon Database (NCSCD) was developed to quantify stocks of soil organic carbon (SOC) in the northern circumpolar permafrost region (a total area of 18.7 x 10(6) km(2)). The NCSCD is a geographical information system (GIS) data set that has been constructed using harmonized regional soil classification maps together with pedon data from the northern permafrost region. Previously, the NCSCD has been used to calculate SOC storage to the reference depths 0-30 cm and 0-100 cm (based on 1778 pedons). It has been shown that soils of the northern circumpolar permafrost region also contain significant quantities of SOC in the 100-300 cm depth range, but there has been no circumpolar compilation of pedon data to quantify this deeper SOC pool and there are no spatially distributed estimates of SOC storage below 100 cm depth in this region. Here we describe the synthesis of an updated pedon data set for SOC storage (kg C m(-2)) in deep soils of the northern circumpolar permafrost regions, with separate data sets for the 100-200 cm (524 pedons) and 200300 cm (356 pedons) depth ranges. These pedons have been grouped into the North American and Eurasian sectors and the mean SOC storage for different soil taxa (subdivided into Gelisols including the sub-orders Histels, Turbels, Orthels, permafrost-free Histosols, and permafrost-free mineral soil orders) has been added to the updated NCSCDv2. The updated version of the data set is freely available on-line in different file formats and spatial resolutions that enable spatially explicit applications in GIS mapping and terrestrial ecosystem models. While this newly compiled data set adds to our knowledge of SOC in the 100-300 cm depth range, it also reveals that large uncertainties remain. Identified data gaps include spatial coverage of deep (> 100 cm) pedons in many regions as well as the spatial extent of areas with thin soils overlying bedrock and the quantity and distribution of massive ground ice. An open access data-portal for the pedon data set and the GIS-data sets is available online at http://bolin.su.se/data/ncscd/. The NCSCDv2 data set has a digital object identifier (doi: 10.5879/ECDS/00000002).
C1 [Hugelius, G.; Kuhry, P.; Palmtag, J.] Stockholm Univ, Dept Phys Geog & Quaternary Geol, S-10691 Stockholm, Sweden.
[Bockheim, J. G.] Univ Wisconsin, Dept Soil Sci, Madison, WI 53706 USA.
[Camill, P.] Bowdoin Coll, Earth & Oceanog Sci Dept, Brunswick, ME 04011 USA.
[Camill, P.] Bowdoin Coll, Environm Studies Program, Brunswick, ME 04011 USA.
[Elberling, B.] Univ Copenhagen, Dept Geosci & Nat Resource Management, CENPERM Ctr Permafrost, DK-1350 Copenhagen, Denmark.
[Elberling, B.] Univ Ctr Svalbard, UNIS, Longyearbyen, Norway.
[Grosse, G.] Univ Alaska Fairbanks, Inst Geophys, Fairbanks, AK 99775 USA.
[Harden, J. W.] US Geol Survey, Menlo Pk, CA 94025 USA.
[Johnson, K.] US Forest Serv, Newtown Sq, PA 29008 USA.
[Jorgenson, T.] Alaska Ecosci, Fairbanks, AK 99709 USA.
[Koven, C. D.] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA.
[Michaelson, G.; Ping, C. -L.] Univ Alaska Fairbanks, Palmer Res Ctr, Palmer, AK 99645 USA.
[Mishra, U.] Argonne Natl Lab, Environm Sci Div, Argonne, IL 60439 USA.
[O'Donnell, J.] Arctic Network, Fairbanks, AK 99709 USA.
[Schirrmeister, L.; Strauss, J.] Helmholtz Ctr Polar & Marin, Alfred Wegener Inst, Periglacial Res Unit, D-14473 Potsdam, Germany.
[Schuur, E. A. G.] Univ Florida, Dept Biol, Gainesville, FL 32611 USA.
[Sheng, Y.; Smith, L. C.] Univ Calif Los Angeles, Dept Geog, Los Angeles, CA 90095 USA.
[Yu, Z.] Lehigh Univ, Dept Earth & Environm Sci, Bethlehem, PA 18015 USA.
RP Hugelius, G (reprint author), Stockholm Univ, Dept Phys Geog & Quaternary Geol, S-10691 Stockholm, Sweden.
EM gustaf.hugelius@natgeo.su.se
RI Schirrmeister, Lutz/O-5584-2015; Elberling, Bo/M-4000-2014; Koven,
Charles/N-8888-2014;
OI Schirrmeister, Lutz/0000-0001-9455-0596; Elberling,
Bo/0000-0002-6023-885X; Koven, Charles/0000-0002-3367-0065; Strauss,
Jens/0000-0003-4678-4982; Grosse, Guido/0000-0001-5895-2141
NR 37
TC 23
Z9 23
U1 2
U2 16
PU COPERNICUS GESELLSCHAFT MBH
PI GOTTINGEN
PA BAHNHOFSALLEE 1E, GOTTINGEN, 37081, GERMANY
SN 1866-3508
EI 1866-3516
J9 EARTH SYST SCI DATA
JI Earth Syst. Sci. Data
PY 2013
VL 5
IS 2
BP 393
EP 402
DI 10.5194/essd-5-393-2013
PG 10
WC Geosciences, Multidisciplinary; Meteorology & Atmospheric Sciences
SC Geology; Meteorology & Atmospheric Sciences
GA V39MQ
UT WOS:000209415500015
ER
PT S
AU Timlin, D
Ahuja, L
AF Timlin, Dennis
Ahuja, Laj
BE Timlin, D
Ahuja, LR
TI Enhancing Understanding and Quantification of Soil-Root Growth
Interactions Preface
SO ENHANCING UNDERSTANDING AND QUANTIFICATION OF SOIL-ROOT GROWTH
INTERACTIONS, VOL 4
SE Advances in Agricultural Systems Modeling-Transdisciplinary Research
Synthesis and Applications
LA English
DT Editorial Material; Book Chapter
C1 [Timlin, Dennis] USDA ARS, USDA ARS CSGCL, BARC West, Bldg 001,Rm 342,10300 Baltimore Ave, Beltsville, MD 20705 USA.
[Ahuja, Laj] USDA ARS, Agr Syst Res Unit, Ft Collins, CO 80526 USA.
RP Timlin, D (reprint author), USDA ARS, USDA ARS CSGCL, BARC West, Bldg 001,Rm 342,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM Dennis.Timlin@ars.usda.gov; laj.ahuja@ars.usda.gov
NR 0
TC 0
Z9 0
U1 0
U2 0
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2163-2774
BN 978-0-89118-339-6; 978-0-89118-338-9
J9 ADV AGR SYST MODEL
PY 2013
VL 4
BP IX
EP X
D2 10.2134/advagricsystmodel4
PG 2
WC Agronomy; Plant Sciences; Soil Science
SC Agriculture; Plant Sciences
GA BE3JG
UT WOS:000370799600002
ER
PT S
AU Benjamin, J
AF Benjamin, J.
BE Timlin, D
Ahuja, LR
TI Effect of Soil Attributes on Root Growth and Distribution in Some Common
Crops: A Synthesis of Knowledge and Future Needs
SO ENHANCING UNDERSTANDING AND QUANTIFICATION OF SOIL-ROOT GROWTH
INTERACTIONS, VOL 4
SE Advances in Agricultural Systems Modeling-Transdisciplinary Research
Synthesis and Applications
LA English
DT Article; Book Chapter
ID LATERAL ROOTS; WATER-UPTAKE; CORN ROOT; TEMPERATURE; SYSTEM; DIFFUSION;
FIELD; ARCHITECTURE; PATTERNS; SOYBEANS
AB One of soil's most important uses is as a medium for crop production. The primary way the soil interacts with the plant is through influences on the root system. The soil serves as an anchor for plant support and as a reservoir for water and plant nutrients. Various factors affect root extension and proliferation and also affect the function of the root in the soil environment. Soil temperature appears to have a greater effect on root development compared with other limiting factors, whereas soil water status, aeration, photosynthate supply, and nutrient availability have a greater effect on root growth. Soil management techniques such as tillage, crop residue cover, irrigation, fertilizer, or machinery traffic all can affect the temperature, water, and aeration status of the soil environment. Zonal differences in the physical condition of the soil can also affect root distribution and the response of the plant to unfavorable conditions. Maintaining the soil in a good condition for plant growth has been and will continue to be an important research topic. This paper addresses several soil physical conditions that affect the development and growth of root systems and proposes ways to include the physical condition of soil in models of plant and root growth that are responsive to soil management techniques.
C1 [Benjamin, J.] USDA ARS, Cent Great Plains Res Stn, 40335 Co Rd GG, Akron, CO 80720 USA.
RP Benjamin, J (reprint author), USDA ARS, Cent Great Plains Res Stn, 40335 Co Rd GG, Akron, CO 80720 USA.
EM joseph.benjamin@ars.usda.gov
NR 27
TC 2
Z9 2
U1 0
U2 1
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2163-2774
BN 978-0-89118-339-6; 978-0-89118-338-9
J9 ADV AGR SYST MODEL
PY 2013
VL 4
BP 31
EP 43
DI 10.2134/advagricsystmodel4.c2
D2 10.2134/advagricsystmodel4
PG 13
WC Agronomy; Plant Sciences; Soil Science
SC Agriculture; Plant Sciences
GA BE3JG
UT WOS:000370799600004
ER
PT S
AU Zobel, RW
AF Zobel, Richard W.
BE Timlin, D
Ahuja, LR
TI Modeling Lolium perenne L. Roots in the Presence of Empirical Black
Holes
SO ENHANCING UNDERSTANDING AND QUANTIFICATION OF SOIL-ROOT GROWTH
INTERACTIONS, VOL 4
SE Advances in Agricultural Systems Modeling-Transdisciplinary Research
Synthesis and Applications
LA English
DT Article; Book Chapter
ID SEEDLINGS; PLANTS
AB Plant root models are designed for understanding structural or functional aspects of root systems. When a process is not thoroughly understood, a black box object is used. However, when a process exists but empirical data do not indicate its existence, you have a black hole. The object of this research was to develop a data set, from which to model perennial ryegrass (Lolium perenne L.) root growth and development; however, three black holes were discovered. These black holes are: (i) Lolium perenne lateral roots may be determinate or indeterminate in growth depending on the clone-determinate not previously described; (ii) a dominant type of lateral root, was discovered, which initiates, seemingly randomly, grows out fast, is larger than typical lateral roots, and may be the primary adaptive basis for Lolium perenne root system response to the environment-not previously described; (iii) surface seeded or shallow seeded seedling root systems are composed of four distinct classes of root rather than three-not previously recognized. Because different root classes are functionally and developmentally distinct, it is necessary to model and study them separately. A preliminary model database is developed but needs significant improvements to adequately account for these three new root developmental patterns.
C1 [Zobel, Richard W.] N Carolina State Univ, USDA ARS, Plant Sci Res, 3127 Ligon St,Box 7631, Raleigh, NC 27695 USA.
RP Zobel, RW (reprint author), N Carolina State Univ, USDA ARS, Plant Sci Res, 3127 Ligon St,Box 7631, Raleigh, NC 27695 USA.
EM rich.zobel@ars.usda.gov
NR 18
TC 2
Z9 2
U1 1
U2 1
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2163-2774
BN 978-0-89118-339-6; 978-0-89118-338-9
J9 ADV AGR SYST MODEL
PY 2013
VL 4
BP 155
EP 171
DI 10.2134/advagricsystmodel4.c7
D2 10.2134/advagricsystmodel4
PG 17
WC Agronomy; Plant Sciences; Soil Science
SC Agriculture; Plant Sciences
GA BE3JG
UT WOS:000370799600009
ER
PT S
AU Logsdon, SD
AF Logsdon, S. D.
BE Timlin, D
Ahuja, LR
TI Root Effects on Soil Properties and Processes: Synthesis and Future
Research Needs
SO ENHANCING UNDERSTANDING AND QUANTIFICATION OF SOIL-ROOT GROWTH
INTERACTIONS, VOL 4
SE Advances in Agricultural Systems Modeling-Transdisciplinary Research
Synthesis and Applications
LA English
DT Article; Book Chapter
ID TIME-DOMAIN REFLECTOMETRY; RED-BROWN EARTH; WATER-UPTAKE; PLANT-ROOTS;
HYDRAULIC CONDUCTIVITY; MECHANICAL IMPEDANCE; SPATIAL VARIABILITY;
AGGREGATE SIZE; BULK-DENSITY; GRAIN-YIELD
AB Roots perform vital functions for the plant such as uptake of water and nutrients from the soil and holding the plant in place. The emphasis of this chapter is on how roots affect soil structure, and how soil structure affects roots in relation to root water uptake. Roots can decrease mean soil aggregate size when growing among large peds but can increase aggregate size when aggregates are initially small. Some pioneer roots can increase the number of biopore channels after the initial roots die. Roots help maintain fractures in the soil. The former root channels become pathways for water infiltration, gas exchange, and new root growth. As roots lose water, the contact between root and soil decreases, which reduces root water uptake. Location of roots in larger preexisting root channels, in fractures, or along large ped faces may facilitate use of preferentially flowing water and allow deeper vertical root penetration to utilize wetter subsoil. Clustering of roots in macropores could reduce water uptake from the soil matrix between rains. Roots are able to proliferate in favorable soil zones and restrict growth in less favorable soil zones for efficient ratio of growth to water and nutrient utilization. The next step in modeling water uptake could include how roots alter aggregation, fractures, and biopores for future root growth.
C1 [Logsdon, S. D.] USDA ARS, Natl Lab Agr & Environm, 2110 Univ Blvd, Ames, IA 50011 USA.
RP Logsdon, SD (reprint author), USDA ARS, Natl Lab Agr & Environm, 2110 Univ Blvd, Ames, IA 50011 USA.
EM sally.logsdon@ars.usda.gov
NR 102
TC 3
Z9 3
U1 5
U2 6
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2163-2774
BN 978-0-89118-339-6; 978-0-89118-338-9
J9 ADV AGR SYST MODEL
PY 2013
VL 4
BP 173
EP 196
DI 10.2134/advagricsystmodel4.c8
D2 10.2134/advagricsystmodel4
PG 24
WC Agronomy; Plant Sciences; Soil Science
SC Agriculture; Plant Sciences
GA BE3JG
UT WOS:000370799600010
ER
PT S
AU Adiku, SGK
Ahuja, LR
Ozier-Lafontaine, H
Dunn, GH
Garcia, L
AF Adiku, S. G. K.
Ahuja, L. R.
Ozier-Lafontaine, H.
Dunn, G. H.
Garcia, L.
BE Timlin, D
Ahuja, LR
TI Soil-Root Interactions in Mixed Plant Systems
SO ENHANCING UNDERSTANDING AND QUANTIFICATION OF SOIL-ROOT GROWTH
INTERACTIONS, VOL 4
SE Advances in Agricultural Systems Modeling-Transdisciplinary Research
Synthesis and Applications
LA English
DT Article; Book Chapter
ID WATER-UPTAKE; CROPPING SYSTEMS; BULK-DENSITY; GROWTH; MODEL;
COMPETITION; RATIO; AGROFORESTRY; ARCHITECTURE; RHIZOSPHERE
AB Roots are major appendages of the plant used for anchorage and for water and nutrient uptake. The roles of roots are numerous, and they constitute a major pathway for the transfer of water from soil into the atmosphere. Root growth is normally genetically controlled, but a host of other factors such as the soil and the plant-plant interactions affect the overall development and distribution patterns. This chapter briefly reviews the knowledge of root growth in mixed plant systems, focusing on how root-soil interactions influence the growth processes. A conceptual framework for simulating the growth and distribution of the component plant root systems is presented, which is based on factors such as compaction, soil water distribution, root carrying capacity of different soil layers, and interspecies interactions. Though still lacking in some respects, the concept was able to simulate a range of observed root growth and water uptake patterns in a realistic manner. The proposed framework does provide a basis for further development of plant growth modeling in mixed systems.
C1 [Adiku, S. G. K.; Garcia, L.] Colorado State Univ, Dept Civil & Environm Engn, Ft Collins, CO 80523 USA.
[Ahuja, L. R.; Dunn, G. H.] USDA ARS, 2150 Bldg D,Ctr Ave, Ft Collins, CO 80526 USA.
[Ozier-Lafontaine, H.] INRA, Unite AgroPedoclimat Zone Caraibe, Petit Bourg 97170, Guadeloupe.
RP Ahuja, LR (reprint author), USDA ARS, 2150 Bldg D,Ctr Ave, Ft Collins, CO 80526 USA.
EM s_adiku@hotmail.com; laj.ahuja@ars.usda.gov;
harry.ozier-lafontaine@antilles.inra.fr; gale.dunn@ars.usda.gov;
garcia@engr.colostate.edu
NR 54
TC 1
Z9 1
U1 1
U2 1
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2163-2774
BN 978-0-89118-339-6; 978-0-89118-338-9
J9 ADV AGR SYST MODEL
PY 2013
VL 4
BP 245
EP 272
DI 10.2134/advagricsystmodel4.c11
D2 10.2134/advagricsystmodel4
PG 28
WC Agronomy; Plant Sciences; Soil Science
SC Agriculture; Plant Sciences
GA BE3JG
UT WOS:000370799600013
ER
PT S
AU Timlin, D
Ahuja, L
AF Timlin, Dennis
Ahuja, Laj
BE Timlin, D
Ahuja, LR
TI Simulation of Soil-Root Growth Interactions and Associated Processes:
Synthesis and Summary
SO ENHANCING UNDERSTANDING AND QUANTIFICATION OF SOIL-ROOT GROWTH
INTERACTIONS, VOL 4
SE Advances in Agricultural Systems Modeling-Transdisciplinary Research
Synthesis and Applications
LA English
DT Article; Book Chapter
C1 [Timlin, Dennis] USDA ARS, USDA ARS CSGCL, BARC West, Bldg 001,Rm 342,10300 Baltimore Ave, Beltsville, MD 20705 USA.
[Ahuja, Laj] USDA ARS, Ft Collins, CO 80526 USA.
RP Timlin, D (reprint author), USDA ARS, USDA ARS CSGCL, BARC West, Bldg 001,Rm 342,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM Dennis.Timlin@ars.usda.gov; laj.ahuja@ars.usda.gov
NR 12
TC 0
Z9 0
U1 0
U2 0
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2163-2774
BN 978-0-89118-339-6; 978-0-89118-338-9
J9 ADV AGR SYST MODEL
PY 2013
VL 4
BP 295
EP 302
DI 10.2134/advagricsystmodel4.c13
D2 10.2134/advagricsystmodel4
PG 8
WC Agronomy; Plant Sciences; Soil Science
SC Agriculture; Plant Sciences
GA BE3JG
UT WOS:000370799600015
ER
PT S
AU Kiang, RK
Soebiyanto, RP
Grieco, JP
Achee, NL
Harrington, LC
Reisen, WK
Anyamba, A
Linthicum, KJ
Pinzon, JE
Zollner, G
Collacicco-Mayhugh, MG
AF Kiang, R. K.
Soebiyanto, R. P.
Grieco, J. P.
Achee, N. L.
Harrington, L. C.
Reisen, W. K.
Anyamba, A.
Linthicum, K. J.
Pinzon, J. E.
Zollner, G.
Collacicco-Mayhugh, M. G.
BE Morain, SA
Budge, AM
TI Vector-borne infectious diseases and influenza
SO ENVIRONMENTAL TRACKING FOR PUBLIC HEALTH SURVEILLANCE
SE International Society for Photogrammetry and Remote Sensing (ISPRS) Book
Series
LA English
DT Article; Book Chapter
ID RIFT-VALLEY FEVER; AEDES-AEGYPTI DIPTERA; WEST-NILE-VIRUS; EQUINE
ENCEPHALOMYELITIS VIRUS; CULICIDAE LARVAL HABITATS; ST-LOUIS
ENCEPHALITIS; AMERICAN CUTANEOUS LEISHMANIASIS; GEOGRAPHIC
INFORMATION-SYSTEMS; SOUTHWESTERN UNITED-STATES; NINO
SOUTHERN-OSCILLATION
AB Breeding, propagation and survivorship of disease-transmitting arthropod vectors often depend on meteorological and environmental parameters. Statistical and biological modelling that incorporate satellite-acquired data provide useful tools for assessing and forecasting these diseases, assessing possible outbreak areas and providing vital information for policies and decision making.
C1 [Kiang, R. K.; Soebiyanto, R. P.; Anyamba, A.; Pinzon, J. E.] NASA, Goddard Space Flight Ctr, Greenbelt, MD 20771 USA.
[Soebiyanto, R. P.; Anyamba, A.] Univ Space Res Assoc, Columbia, MD 21044 USA.
[Grieco, J. P.; Achee, N. L.] Uniformed Serv Univ Hlth Sci, Bethesda, MD 20814 USA.
[Harrington, L. C.] Cornell Univ, Ithaca, NY 14853 USA.
[Reisen, W. K.] Univ Calif Davis, Sch Vet Med, Davis, CA 95616 USA.
[Linthicum, K. J.] ARS, USDA, Gainesville, FL 32608 USA.
[Pinzon, J. E.] Sci Syst & Applicat Inc, Lanham, MD 20706 USA.
[Zollner, G.] Walter Reed Army Inst Res, Silver Spring, MD 20910 USA.
[Collacicco-Mayhugh, M. G.] Walter Reed Army Inst Res, Div Entomol, Silver Spring, MD 20910 USA.
RP Kiang, RK (reprint author), NASA, Goddard Space Flight Ctr, Greenbelt, MD 20771 USA.
EM richard.kiang@nasa.gov; radina.p.soebiyanto@nasa.gov; jgrieco@usuhs.mil;
nachee@usuhs.mil; lch27@cornell.edu; wkreisen@ucdavis.edu;
assaf.anyamba@nasa.gov; kenneth.linthicum@ars.usda.gov;
jorge.e.pinzon@nasa.gov; gabriela.zollner@us.army.mil;
Michelle.Colacicco@us.army.mil
NR 317
TC 0
Z9 0
U1 0
U2 0
PU A A BALKEMA PUBLISHERS
PI LEIDEN
PA SCHIPHOLWEG 107C, PO BOX 447, 2316 XC LEIDEN, NETHERLANDS
SN 1572-3348
BN 978-0-203-09327-6; 978-0-415-58471-5
J9 ISPRS BOOK SER
PY 2013
VL 11
BP 21
EP 86
PG 66
WC Public, Environmental & Occupational Health; Remote Sensing
SC Public, Environmental & Occupational Health; Remote Sensing
GA BC2MZ
UT WOS:000351090700004
ER
PT J
AU Lee, J
Scagel, CF
AF Lee, Jungmin
Scagel, Carolyn F.
TI Chicoric acid: chemistry, distribution, and production
SO FRONTIERS IN CHEMISTRY
LA English
DT Review
DE phenolics; polyphenolics; cichoric acid; caffeic acid derivative;
dicaffeoyltartaric acid; hydroxycinnamic acid; phenolic acid
AB Though chicoric acid was first identified in 1958, it was largely ignored until recent popular media coverage cited potential health beneficial properties from consuming food and dietary supplements containing this compound. To date, plants from at least 63 genera and species have been found to contain chicoric acid, and while the compound is used as a processing quality indicator, it may also have useful health benefits. This review of chicoric acid summarizes research findings and highlights gaps in research knowledge for investigators, industry stakeholders, and consumers alike. Additionally, chicoric acid identification, and quantification methods, biosynthesis, processing improvements to increase chicoric acid retention, and potential areas for future research are discussed.
C1 [Lee, Jungmin] ARS, USDA, Hort Crops Res Unit Worksite, 29603 U 1 Ln, Parma, ID 83660 USA.
[Scagel, Carolyn F.] ARS, USDA, Hort Crops Res Unit, Corvallis, OR USA.
RP Lee, J (reprint author), ARS, USDA, Hort Crops Res Unit Worksite, 29603 U 1 Ln, Parma, ID 83660 USA.
EM jungmin.lee@ars.usda.gov
OI Lee, Jungmin/0000-0002-8660-9444
FU USDA-Agricultural Research Service (ARS) CRIS [5358-21000-041-00D,
5358-21000-042-00D]
FX This project was funded by USDA-Agricultural Research Service (ARS) CRIS
numbers 5358-21000-041-00D and 5358-21000-042-00D. Mention of trade
names or commercial products in this publication is solely for the
purpose of providing specific information and does not imply
recommendation or endorsement by the U.S. Department of Agriculture.
NR 158
TC 4
Z9 4
U1 4
U2 9
PU FRONTIERS MEDIA SA
PI LAUSANNE
PA PO BOX 110, EPFL INNOVATION PARK, BUILDING I, LAUSANNE, 1015,
SWITZERLAND
EI 2296-2646
J9 FRONT CHEM
JI Front. Chem.
PY 2013
VL 1
AR UNSP 40
DI 10.3389/fchem.2013.00040
PG 17
WC Chemistry, Multidisciplinary
SC Chemistry
GA V43JU
UT WOS:000209678500037
PM 24790967
ER
PT J
AU Bohbot, JD
Durand, NF
Vinyard, BT
Dickens, JC
AF Bohbot, Jonathan D.
Durand, Nicolas F.
Vinyard, Bryan T.
Dickens, Joseph C.
TI Functional development of the octenol response in Aedes aegypti
SO FRONTIERS IN PHYSIOLOGY
LA English
DT Article
DE odorant receptor; gustatory receptor; octenol; CO2; olfaction; Aedes
aegypti; development
ID YELLOW-FEVER MOSQUITO; OLFACTORY RECEPTOR NEURONS; CARBON-DIOXIDE
DETECTION; ODORANT RECEPTOR; ANOPHELES-GAMBIAE; TRICHOPLUSIA-NI;
APIS-MELLIFERA; SEX-PHEROMONE; BEHAVIOR; OCTOPAMINE
AB Attraction of female Aedes aegypti mosquitoes to 1-octen-3-ol (octenol), CO2, lactic acid, or ammonia emitted by vertebrate hosts is not only contingent on the presence of odorants in the environment, but is also influenced by the insect's physiological state. For anautogenous mosquito species, like A. aegypti, newly emerged adult females neither respond to host odors nor engage in blood-feeding; the bases for these behaviors are poorly understood. Here we investigated detection of two components of an attractant blend emitted by vertebrate hosts, octenol, and CO2, by female A. aegypti mosquitoes using electrophysiological, behavioral, and molecular approaches. An increase in sensitivity of octenol olfactory receptor neurons (ORNs) was correlated with an increase in odorant receptor gene (Or) expression and octenol-mediated attractive behavior from day 1 to day 6 post-emergence. While the sensitivity of octenol ORNs was maintained through day 10, behavioral responses to octenol decreased as did the ability of females to discriminate between octenol and octenol + CO2. Our results show differing age-related roles for the peripheral receptors for octenol and higher order neural processing in the behavior of female mosquitoes.
C1 [Bohbot, Jonathan D.; Durand, Nicolas F.; Dickens, Joseph C.] Agr Res Serv, Invas Insect Biocontrol & Behav Lab, Henry A Wallace Beltsville Agr Res Ctr, Inst Plant Sci,USDA, Beltsville, MD 20705 USA.
[Vinyard, Bryan T.] Agr Res Serv, Biometr Counseling Serv, Henry A Wallace Beltsville Agr Res Ctr, USDA, Beltsville, MD 20705 USA.
RP Dickens, JC (reprint author), Agr Res Serv, Invas Insect Biocontrol & Behav Lab, Beltsville Agr Res Ctr, Inst Plant Sci,USDA, Bldg 007,Room 030,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM joseph.dickens@ars.usda.gov
RI Durand, Nicolas/D-3035-2011
OI Durand, Nicolas/0000-0002-3613-2609
FU Deployed War Fighter Protection (DWFP) Research Program; Department of
Defense through the Armed Forces Pest Management Board (AFPMB)
FX We wish to thank the following individuals: Dr. Shawn E. Levy and
Nripesh Prasad at the Genomic Services Lab at HudsonAlpha Institute for
Biotechnology for Illumina sequencing and data analyses; Dr. Gary
Bauchan (The Electron and Confocal Microscope Unit, USDA, ARS) for his
assistance in obtaining scanned electron microscope images of A.
aegypti. We are also grateful to Drs. Richard Vogt and Jackson Sparks
(University of South Carolina) whose useful comments have improved the
quality of the manuscript. This work was supported in part by a grant to
Joseph C. Dickens from the Deployed War Fighter Protection (DWFP)
Research Program funded by the Department of Defense through the Armed
Forces Pest Management Board (AFPMB).
NR 48
TC 8
Z9 8
U1 1
U2 18
PU FRONTIERS RESEARCH FOUNDATION
PI LAUSANNE
PA PO BOX 110, LAUSANNE, 1015, SWITZERLAND
SN 1664-042X
J9 FRONT PHYSIOL
JI Front. Physiol.
PY 2013
VL 4
AR 39
DI 10.3389/fphys.2013.00039
PG 8
WC Physiology
SC Physiology
GA AX2LA
UT WOS:000346774000039
PM 23471139
ER
PT B
AU Brown, DW
Proctor, RH
AF Brown, Daren W.
Proctor, Robert H.
BE Brown, DW
Proctor, RH
TI Fusarium Genomics, Molecular and Cellular Biology Preface
SO FUSARIUM: GENOMICS, MOLECULAR AND CELLULAR BIOLOGY
LA English
DT Editorial Material; Book Chapter
C1 [Brown, Daren W.; Proctor, Robert H.] ARS, Bacterial Foodborne Pathogens & Mycol Res, USDA, NCAUR, Peoria, IL 61604 USA.
RP Brown, DW (reprint author), ARS, Bacterial Foodborne Pathogens & Mycol Res, USDA, NCAUR, Peoria, IL 61604 USA.
EM daren.brown@ars.usda.gov; robert.proctor@ars.usda.gov
NR 0
TC 0
Z9 0
U1 0
U2 0
PU CAISTER ACADEMIC PRESS
PI WYMONDHAM
PA 32 HEWITTS LANE, WYMONDHAM NR 18 0JA, ENGLAND
BN 978-1-908230-75-1; 978-1-908230-25-6
PY 2013
BP VII
EP VII
PG 1
WC Biochemistry & Molecular Biology; Mycology
SC Biochemistry & Molecular Biology; Mycology
GA BF6YG
UT WOS:000383803200001
ER
PT B
AU Kistler, HC
Rep, M
Ma, LJ
AF Kistler, H. Corby
Rep, Martijn
Ma, Li-Jun
BE Brown, DW
Proctor, RH
TI Structural Dynamics of Fusarium Genomes
SO FUSARIUM: GENOMICS, MOLECULAR AND CELLULAR BIOLOGY
LA English
DT Article; Book Chapter
ID FUNGUS NECTRIA-HAEMATOCOCCA; CONDITIONALLY DISPENSABLE CHROMOSOME;
ELECTROPHORETIC KARYOTYPE VARIATION; IN-SITU HYBRIDIZATION;
SUPERNUMERARY CHROMOSOME; MATING POPULATION; FILAMENTOUS FUNGI;
USTILAGO-HORDEI; GENE CLUSTERS; OXYSPORUM
AB Fungi in the genus Fusarium have a great negative impact on the world economy; yet also hold great potential for answering many fundamental biological questions. The advance of sequencing technologies has made possible the connection between phenotypes and genetic mechanisms underlying the acquisition and diversification of such traits with economic and biological significance. This chapter provides a historical view of our understanding of genomic structural variation among Fusarium species. Prior to the genomic era, chromosomal variation was observed between Fusarium species and among isolates of F. oxysporum and F. solani (teleomorph Nectria haematococca). Such observations led to the discovery of supernumerary chromosomes in Nectria haematococca MPVI and have established their role in fungus-plant interactions. Contemporary comparative genomic studies not only have confirmed the existence of supernumerary chromosomes in the F. oxysporum and F. solani genomes, but also have provided strong evidence for the horizontal transmission of these chromosomes and their role as genetic determinants of host specific virulence. Overall, knowledge of the highly dynamic Fusarium genomes establishes them as eukaryotic models allowing greater understanding of genome plasticity and adaptive evolution to ecological niches.
C1 [Kistler, H. Corby] Univ Minnesota, USDA, ARS, Cereal Dis Lab, St Paul, MN 55108 USA.
[Rep, Martijn] Univ Amsterdam, Swammerdam Inst Life Sci, Amsterdam, Netherlands.
[Ma, Li-Jun] Univ Massachusetts, Dept Biochem & Mol Biol, Amherst, MA 01003 USA.
RP Kistler, HC (reprint author), Univ Minnesota, USDA, ARS, Cereal Dis Lab, St Paul, MN 55108 USA.
EM hckist@umn.edu; m.rep@uva.nl; lijun@biochem.umass.edu
NR 56
TC 1
Z9 1
U1 0
U2 0
PU CAISTER ACADEMIC PRESS
PI WYMONDHAM
PA 32 HEWITTS LANE, WYMONDHAM NR 18 0JA, ENGLAND
BN 978-1-908230-75-1; 978-1-908230-25-6
PY 2013
BP 31
EP 41
PG 11
WC Biochemistry & Molecular Biology; Mycology
SC Biochemistry & Molecular Biology; Mycology
GA BF6YG
UT WOS:000383803200004
ER
PT B
AU Brown, DW
Proctor, RH
AF Brown, Daren W.
Proctor, Robert H.
BE Brown, DW
Proctor, RH
TI Diversity of Polyketide Synthases in Fusarium
SO FUSARIUM: GENOMICS, MOLECULAR AND CELLULAR BIOLOGY
LA English
DT Article; Book Chapter
ID RED PIGMENT BIKAVERIN; GIBBERELLA-ZEAE; GENE-CLUSTER;
BIOSYNTHETIC-PATHWAY; ASPERGILLUS-NIDULANS; MOLECULAR-GENETICS;
FILAMENTOUS FUNGI; VIRULENCE FACTOR; IDENTIFICATION; GRAMINEARUM
AB Fusarium can produce a structurally diverse array of secondary metabolites (SMs) with a range of biological activities, including pigmentation, plant growth regulation, and toxicity to humans and other animals. Contamination of grain-based food and feed with toxic SMs produced by Fusarium is associated with a variety of diseases in plants and animals and results in loss of millions of dollars in grain commodities each year. Many SMs are formed via the activities of a family of large enzymes called polyketide synthases (PKSs) that consist of between five and eight functional domains. This Chapter reviews the structures and functions of Fusarium PKSs present in four species, Fusarium verticillioides, Fusarium graminearum, Fusarium solani and Fusarium oxysporum. Each genome has between 11 and 16 PKS genes. Re-examination of inferred phylogenetic relationships of deduced amino acid sequences provides insight into how this gene family evolved. The geneaologies suggest that collectively the Fusarium PKSs represent 36 distinct sets of PKS homologues, where each set catalyses synthesis of a structurally distinct polyketide. Variation in Fusarium PKS genes is due to both ancient and recent gene duplications, gene loss events, gain-of-function due to the acquisition of new domains, and of loss-of-function due to nucleotide mutations. The significant number and variety of evolutionary changes reflects a vast biosynthetic potential this gene family provides fungi and that may help them adapt to changing environmental conditions. Understanding how fungal polyketides are synthesized should lead to better methods to control their production and thereby reduce their negative impact on human endevors.
C1 [Brown, Daren W.; Proctor, Robert H.] ARS, Bacterial Foodborne Pathogens & Mycol Res, USDA, NCAUR, Peoria, IL 61604 USA.
RP Brown, DW (reprint author), ARS, Bacterial Foodborne Pathogens & Mycol Res, USDA, NCAUR, Peoria, IL 61604 USA.
EM daren.brown@ars.usda.gov; robert.proctor@ars.usda.gov
NR 70
TC 3
Z9 3
U1 1
U2 1
PU CAISTER ACADEMIC PRESS
PI WYMONDHAM
PA 32 HEWITTS LANE, WYMONDHAM NR 18 0JA, ENGLAND
BN 978-1-908230-75-1; 978-1-908230-25-6
PY 2013
BP 143
EP 164
PG 22
WC Biochemistry & Molecular Biology; Mycology
SC Biochemistry & Molecular Biology; Mycology
GA BF6YG
UT WOS:000383803200009
ER
PT B
AU Esmenjaud, D
Srinivasan, C
AF Esmenjaud, Daniel
Srinivasan, Chinnathambi
BE Kole, C
Abbott, AG
TI Molecular Breeding
SO GENETICS, GENOMICS AND BREEDING OF STONE FRUITS
SE Genetics Genomics and Breeding of Crop Plants
LA English
DT Article; Book Chapter
DE Prunus; RFLP; RAPD; AFLP; SSR; gene pyramiding; transgenic breeding
ID PEACH PRUNUS-PERSICA; PLUM-POX-VIRUS; ROOT-KNOT NEMATODE;
GENETIC-LINKAGE MAP; AGROBACTERIUM-MEDIATED TRANSFORMATION; POWDERY
MILDEW RESISTANCE; MARKER-ASSISTED SELECTION; APHID MYZUS-PERSICAE; COAT
PROTEIN GENE; ADVENTITIOUS SHOOT REGENERATION
AB Prunus breeding programs face continual challenges to select for cultivars with durable resistance to pests and diseases, with taste-and nutrition-improved characteristics and adaptation to increasing changes in environmental conditions. Historically various molecular fingerprinting techniques mainly RFLPs, RAPDs, SCARs, AFLPs, and SSRs successively contributed for identification of stone fruit germplasm, characterization of its genetic diversity, and assistance in depicting distinctness, uniformity and stability (DUS) of cultivars. AFLPs and SRRs both generate the highest-resolution patterns to identify cultivars in species with a very low polymorphism such as peach. Nevertheless, SSRs, as the most transportable markers across species, are now a preferred technique for marker-assisted breeding (MAB) in stone fruits, particularly peach, apricot and almond. Breeding programs primarily rely on the evaluation of genetic diversity of collection of material before choosing the parental material that will allow to maximize this diversity for subsequent optimal combination. The online release of the peach genome sequence has opened up the way to a huge step forward by giving a direct access to all genomic data and particularly to multiple new SSR loci as an optimal tool for improved germplasm characterization. In Prunus spp. a diversification of markers, which is mainly based on gene sequences (SNPs, RGAs, CGAs) and gene expression (ESTs), is now in progress. Current examples of MAB relate to very diverse features including columnar growth habit, self-incompatibility, environmental adaptation, resistance to biotic stresses such as green peach aphid (Myzus persicae), sharka (Plum pox virus-PPV), powdery mildew, peach tree short life (PTSL), and root-knot nematodes (RKN). In this context, one of the predominant goals of MAB is to promote gene pyramiding as a guarantee for resistance durability to biotic stresses. A first example is the ongoing breeding strategy for RKN resistance in Prunus rootstocks, which is based on pyramiding of the major genes Ma (plum), RMia (peach) and RMja (almond) in order to confer a high-level, wide-spectrum and heat-stable resistance. Another example is the Fruit Breedomics project that focused notably on several genes or QTLs for resistance to peach green aphid and powdery mildew. In the near future, new MAB challenge will be to emphasize on the selection at the genome level and develop genome-wide association mapping (linkage disequilibrium studies) enabling genome-wide surveys of variability based on markers evolving from SSRs to SNPs. Due to the availability of peach genome sequence, molecular breeding will rely more and more on peach as a model species for stone fruits. Investigations aiming at developing transgenic breeding of stone fruits report Agrobacterium tumefaciens-mediated transformation of both mature and juvenile tissues. However successful transformation and regeneration of commercial cultivars are still far from routine and are limited to a few genotypes or to seedlings. Thus transgenic breeding efforts focus on solving major bottlenecks, e.g., the recalcitrance to regenerate adventitious shoots from clonal tissues such as leaf explants and the long (3 to 10 years) juvenile period in obtaining transgenic stone fruits. Nevertheless, PPV-resistant transgenic plum has been produced that is now deregulated for commercial planting in USA.
C1 [Esmenjaud, Daniel] INRA CNRS Univ Nice, Equipe Interact Plantes Nematodes, Ctr Rech Provence Alpes Cote Azur, INRA,UMR ISA Inst Sophia Agrobiotech, 400 Route Chappes,BP 167, F-06903 Sophia, France.
[Srinivasan, Chinnathambi] ARS, USDA, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
RP Esmenjaud, D (reprint author), INRA CNRS Univ Nice, Equipe Interact Plantes Nematodes, Ctr Rech Provence Alpes Cote Azur, INRA,UMR ISA Inst Sophia Agrobiotech, 400 Route Chappes,BP 167, F-06903 Sophia, France.
EM daniel.esmenjaud@sophia.inra.fr; chinnathambi.srinivasan@ars.usda.gov
NR 236
TC 0
Z9 0
U1 3
U2 3
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4665-6549-4; 978-1-57808-801-0
J9 GENET GENOM BREED CR
JI Genet. Genome Breed. Crop Plants
PY 2013
BP 158
EP 211
D2 10.1201/b14578
PG 54
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BF4YG
UT WOS:000381766000009
ER
PT J
AU Bruyninckx, H
Ye, Q
AF Bruyninckx, Hans
Ye, Qi
BE Bruyninckx, H
Ye, Q
Thuan, NQ
Belis, D
TI The increasingly complex nature of EU-China climate relations
SO GOVERNANCE OF CLIMATE RELATIONS BETWEEN EUROPE AND ASIA: EVIDENCE FROM
CHINA AND VIETNAM AS KEY EMERGING ECONOMIES
SE Leuven Global Governance
LA English
DT Article; Book Chapter
ID EUROPEAN-UNION; EMISSIONS; FUTURE; POLICY; TRADE
C1 [Bruyninckx, Hans] Univ Leuven, HIVA Res Inst Work & Soc, Leuven, Belgium.
[Bruyninckx, Hans] Univ Leuven, Global Environm Governance, Leuven, Belgium.
[Ye, Qi] Tsinghua Univ, Sch Publ Policy & Management, Climate Policy Initiat, Beijing, Peoples R China.
[Ye, Qi] Tsinghua Univ, Sch Publ Policy & Management, Environm Policy, Beijing, Peoples R China.
[Ye, Qi] Beijing Normal Univ, Environm Sci, Beijing 100875, Peoples R China.
[Ye, Qi] Univ Calif Berkeley, Berkeley, CA 94720 USA.
[Ye, Qi] US DOE, Washington, DC 20585 USA.
[Ye, Qi] USDA, Washington, DC 20250 USA.
[Ye, Qi] Minist Sci & Technol China, Beijing, Peoples R China.
[Ye, Qi] Natl Dev & Reform Commiss, Beijing, Peoples R China.
[Ye, Qi] World Bank, Washington, DC 20433 USA.
[Ye, Qi] European Commiss, DG Climate Act, Brussels, Belgium.
RP Bruyninckx, H (reprint author), Univ Leuven, HIVA Res Inst Work & Soc, Leuven, Belgium.
NR 81
TC 1
Z9 1
U1 0
U2 0
PU EDWARD ELGAR PUBLISHING LTD
PI CHELTENHAM
PA GLENSANDA HOUSE, MONTPELLIER PARADE, CHELTENHAM GL50 1UA, GLOS, ENGLAND
BN 978-1-78195-598-7
J9 LEUVEN GLOB GOV
PY 2013
BP 25
EP 50
D2 10.4337/9781781955994
PG 26
WC GREEN & SUSTAINABLE SCIENCE & TECHNOLOGY; Environmental Studies;
International Relations
SC Science & Technology - Other Topics; Environmental Sciences & Ecology;
International Relations
GA BG3EF
UT WOS:000387910100003
ER
PT B
AU Tshabalala, MA
Jakes, J
VanLandingham, MR
Wang, SX
Peltonen, J
AF Tshabalala, Mandla A.
Jakes, Joseph
VanLandingham, Mark R.
Wang, Shaoxia
Peltonen, Jouko
BE Rowell, RM
TI Surface Characterization
SO HANDBOOK OF WOOD CHEMISTRY AND WOOD COMPOSITES, 2ND EDITION
LA English
DT Article; Book Chapter
ID INVERSE GAS-CHROMATOGRAPHY; ATOMIC-FORCE MICROSCOPY; WOOD CELL-WALLS;
ION MASS-SPECTROMETRY; SCANNING-ELECTRON-MICROSCOPY; ACID-BASE
PROPERTIES; MECHANICAL-PROPERTIES; ELASTIC-MODULUS; INSTRUMENTED
INDENTATION; SPRUCE WOOD
C1 [Tshabalala, Mandla A.; Jakes, Joseph] USDA, Forest Prod Lab, Madison, WI 53705 USA.
[VanLandingham, Mark R.] Army Res Lab, Adelphi, MD USA.
[Wang, Shaoxia; Peltonen, Jouko] Abo Akad Univ, Ctr Funct Mat, Turku, Finland.
RP Tshabalala, MA (reprint author), USDA, Forest Prod Lab, Madison, WI 53705 USA.
NR 141
TC 1
Z9 1
U1 0
U2 1
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-5381-8; 978-1-4398-5380-1
PY 2013
BP 217
EP 252
PG 36
WC Materials Science, Paper & Wood; Materials Science, Composites
SC Materials Science
GA BC7SM
UT WOS:000355191400009
ER
PT B
AU Clemons, CM
Rowell, RM
Plackett, D
Segerholm, BK
AF Clemons, Craig M.
Rowell, Roger M.
Plackett, David
Segerholm, B. Kristoffer
BE Rowell, RM
TI Wood/Nonwood Thermoplastic Composites
SO HANDBOOK OF WOOD CHEMISTRY AND WOOD COMPOSITES, 2ND EDITION
LA English
DT Article; Book Chapter
ID POLY(LACTIC ACID) COMPOSITES; LIFE-CYCLE ASSESSMENT;
MECHANICAL-PROPERTIES; WOOD-FIBER; GREEN COMPOSITES; KENAF FIBER;
L-LACTIDE; POLYLACTIDES; COPOLYMERS; CELLULOSE
C1 [Clemons, Craig M.] USDA, Forest Prod Lab, Madison, WI 53705 USA.
[Rowell, Roger M.] Univ Wisconsin, Biol Syst Engn, Madison, WI USA.
[Plackett, David] Tech Univ Denmark, Dept Chem & Biochem Engn, DK-2800 Lyngby, Denmark.
[Segerholm, B. Kristoffer] SP Tech Res Inst Sweden, EcoBuild Inst Excellence Ctr, Stockholm, Sweden.
RP Clemons, CM (reprint author), USDA, Forest Prod Lab, Madison, WI 53705 USA.
NR 78
TC 5
Z9 5
U1 0
U2 1
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-5381-8; 978-1-4398-5380-1
PY 2013
BP 473
EP 508
PG 36
WC Materials Science, Paper & Wood; Materials Science, Composites
SC Materials Science
GA BC7SM
UT WOS:000355191400014
ER
PT B
AU Guo, QF
Norman, S
AF Guo, Qinfeng
Norman, Steve
BE Jose, S
Singh, HP
Batish, DR
Kohli, RK
TI Improving restoration to control plant invasions under climate change
SO INVASIVE PLANT ECOLOGY
LA English
DT Article; Book Chapter
ID PRODUCTIVITY RELATIONSHIPS; ECOLOGICAL RESTORATION; COMMUNITY
RESTORATION; NORTH-AMERICA; GROWTH FORM; DIVERSITY; MANAGEMENT;
BIODIVERSITY; DISTURBANCE
C1 [Guo, Qinfeng; Norman, Steve] US Forest Serv, USDA, Eastern Forest Environm Threat Assessment Ctr, Asheville, NC 28801 USA.
RP Guo, QF (reprint author), US Forest Serv, USDA, Eastern Forest Environm Threat Assessment Ctr, Asheville, NC 28801 USA.
NR 46
TC 0
Z9 0
U1 1
U2 3
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-8127-9; 978-1-4398-8126-2
PY 2013
BP 203
EP 216
D2 10.1201/b13865
PG 14
WC Plant Sciences; Ecology
SC Plant Sciences; Environmental Sciences & Ecology
GA BC7ZO
UT WOS:000355443700016
ER
PT J
AU Spencer, DF
Carruthers, RI
AF Spencer, D. F.
Carruthers, R. I.
TI Predicting Eurasian watermilfoil's (Myriophyllum spicatum) distribution
and its likely response to biological control in a spring-fed river
SO JOURNAL OF AQUATIC PLANT MANAGEMENT
LA English
DT Article
DE river plants; invasion; biological control; predictive aquatic plant
management
AB Controlling invasive aquatic plants would benefit from development of predictive theories that can be used to set priorities for when, where, and how to manage these species. The invasion of Eurasian watermilfoil (Myriophyllum spicalum L.) into a northern California river provides an opportunity to apply predictive relationships for it and its management. To test a hypothesis (from the scientific literature) regarding habitat. susceptibility to Eurasian watermilfoil invasion and evaluate prospects for its management, we collected water quality, temperature, and plant data from Fall River. During 2009 and 2010 we determined Eurasian watermilfoil abundance and distribution at 71 locations within the river from an upstream to downstream direction. We also determined water temperature and total phosphorus (P) concentration. Eurasian watermilfoil frequency increased in the river downstream from the confluence of Spring Creek. Based on measured total P concentrations and simulations from a physiologically based growth model, Eurasian watermilfoil should be able to grow upstream of this point. as well, High water levels which prevent boats from passing under the bridge located at this point may limit the upstream spread of Eurasian watermilfoil. One proposal is to introduce the Eurasian watermilfoil weevil (Euhryciopsis lecontei Dietz) as a biological control agent. In other habitats the weevil has been most successful when 3 or more generations of weevils are produced each year. Degree-day calculations using Fall River water temperatures and 2 scenarios for weevil growth and development indicate that the weevil only achieves 3 or more generations per growing season at points downstream of the confluence of the Title River. This represents the downstream one-third of the river. This information, in conjunction with simulations from a published model on the weevil/milfoil interaction, suggest that it is not likely that the milfoil weevil will reduce Eurasian watermilfoil biomass in Fall River.
C1 [Spencer, D. F.] USDA, ARS, Exot & Invas Weed Res, Davis, CA 95616 USA.
[Carruthers, R. I.] USDA, ARS, Exot & Invas Weed Res, Albany, GA 94710 USA.
RP Spencer, DF (reprint author), USDA, ARS, Exot & Invas Weed Res, Davis, CA 95616 USA.
EM david.spencer@ars.usda.gov
NR 52
TC 0
Z9 0
U1 4
U2 13
PU AQUATIC PLANT MANAGEMENT SOC, INC
PI VICKSBURG
PA PO BOX 821265, VICKSBURG, MS 39182 USA
SN 0146-6623
J9 J AQUAT PLANT MANAGE
JI J. Aquat. Plant Manage.
PD JAN
PY 2013
VL 51
BP 7
EP 14
PG 8
WC Plant Sciences; Marine & Freshwater Biology
SC Plant Sciences; Marine & Freshwater Biology
GA V39YF
UT WOS:000209445600002
ER
PT J
AU Tipping, PW
Martin, MR
Jr, WJH
Madeira, PT
Pierce, RM
Smart, MD
Center, TD
AF Tipping, Philip W.
Martin, M. R.
Jr, W. J. Hulslander
Madeira, P. T.
Pierce, R. M.
Smart, M. D.
Center, T. D.
TI Release and evaluation of Cyrtobagous salviniae on common salvinia in
southern Louisiana
SO JOURNAL OF AQUATIC PLANT MANAGEMENT
LA English
DT Article
DE Salvinia minima; Cyrtobagons salviniae; biological control; aquatic
weeds
AB Common salvinia (Salvinia minute) is one of the most widespread, non-native invasive species at the :Barataria Preserve of Jean Lafitte National Historical Park and Preserve in southern Louisiana and currently infests more than 3,600 ha and 48 km of navigable waterways. A proven biological control agent, the salvinia weevil (Cyrtobagous salviniae Calder and Sands), was field collected on S.minima in Florida, checked for pathogens, and then released in the Preserve from June 2002 through June 2005. Few weevils were recovered front heavily shaded sites when compared to full sun sites where weevils were recovered frequently. Plant biomass and percent cover were reduced only in full sun sites. A field nursery site was established at an undisturbed location in Twin Canals in June 2003 and stocked with 2,421 weevils, released periodically until August 2005. Although weevils, including teneral adults, were recovered at all but one release site, population establishment was not confirmed during this period because of multiple perturbations, culminating in Hurricane Katrina, which caused large scale saltwater intrusion which temporarily destroyed all the sites near the end of the project. However, recent weevil detections by other researchers suggest that the weevils did establish in the area. Any future research efforts in this region should focus on identifying full sun, undisturbed sites to expedite establishment and evaluate impact.
C1 [Tipping, Philip W.; Madeira, P. T.; Center, T. D.] USDA ARS, Invas Plant Res Lab, Ft Lauderdale, FL 33314 USA.
[Martin, M. R.] US Fish & Wildlife Serv, ARM Loxithatchee Natl Wildlife Refuge, Boynton Beach, FL 33473 USA.
[Jr, W. J. Hulslander] Natl Pk Serv, Assateague Isl Natl Seashore, Berlin, MD 21811 USA.
[Pierce, R. M.] Alan Plummer Assoc Inc, Dallas, TX 75217 USA.
[Smart, M. D.] Univ Minnesota, Dept Entomol, St Paul, MN 55108 USA.
RP Tipping, PW (reprint author), USDA ARS, Invas Plant Res Lab, 3225 Coll Ave, Ft Lauderdale, FL 33314 USA.
EM Philip.tipping@ars.usda.gov
NR 19
TC 0
Z9 0
U1 1
U2 1
PU AQUATIC PLANT MANAGEMENT SOC, INC
PI VICKSBURG
PA PO BOX 821265, VICKSBURG, MS 39182 USA
SN 0146-6623
J9 J AQUAT PLANT MANAGE
JI J. Aquat. Plant Manage.
PD JAN
PY 2013
VL 51
BP 34
EP 38
PG 5
WC Plant Sciences; Marine & Freshwater Biology
SC Plant Sciences; Marine & Freshwater Biology
GA V39YF
UT WOS:000209445600006
ER
PT J
AU Wong, WW
Barlow, SE
Mikhail, C
Wilson, TA
Hernandez, PM
Shypailo, RJ
Abrams, SH
AF Wong, William W.
Barlow, Sarah E.
Mikhail, Carmen
Wilson, Theresa A.
Hernandez, Paula M.
Shypailo, Roman J.
Abrams, Stephanie H.
TI A Residential Summer Camp Can Reduce Body Fat and Improve Health-related
Quality of Life in Obese Children
SO JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION
LA English
DT Article
DE body fat; childhood obesity; quality of life; summer camp
ID SELF-ESTEEM; MASS INDEX; ADOLESCENTS; WEIGHT
AB In an earlier report, we showed that a 2-week, residential summer camp (Kamp K'aana) led to improved body weight, body mass index, body mass index z score, and self-esteem among obese children. To assess whether improvements in body weight and self-esteem translate into improvement in body fat and weight-related quality of life, we measured the changes in body fat by bioimpedance and quality of life by Impact of Weight on Quality of Life instrument on 42 multiethnic obese children who took part in our Kamp K'aana program. Significant reduction in body fat was detected with significant improvements in the weight-related quality of life scores.
C1 [Wong, William W.; Barlow, Sarah E.; Mikhail, Carmen; Wilson, Theresa A.; Shypailo, Roman J.; Abrams, Stephanie H.] Baylor Coll Med, Dept Pediat, Houston, TX 77030 USA.
[Hernandez, Paula M.] Texas Childrens Hosp, Houston, TX 77030 USA.
RP Wong, WW (reprint author), USDA ARS, Childrens Nutr Res Ctr, 1100 Bates St, Houston, TX 77030 USA.
EM wwong@bcm.edu
FU Houston Endowment; USDA/ARS grant [6250-51000-053]
FX The project is partially supported by funds from the Houston Endowment
and USDA/ARS grant #6250-51000-053.
NR 10
TC 5
Z9 5
U1 1
U2 3
PU LIPPINCOTT WILLIAMS & WILKINS
PI PHILADELPHIA
PA TWO COMMERCE SQ, 2001 MARKET ST, PHILADELPHIA, PA 19103 USA
SN 0277-2116
EI 1536-4801
J9 J PEDIATR GASTR NUTR
JI J. Pediatr. Gastroenterol. Nutr.
PD JAN
PY 2013
VL 56
IS 1
BP 83
EP 85
DI 10.1097/MPG.0b013e3182736f70
PG 3
WC Gastroenterology & Hepatology; Nutrition & Dietetics; Pediatrics
SC Gastroenterology & Hepatology; Nutrition & Dietetics; Pediatrics
GA 063UV
UT WOS:000313028400024
PM 22995865
ER
PT J
AU Tarara, JM
AF Tarara, Julie M.
TI Micrometeorological Principles of Protected Cultivation
SO JOURNAL OF THE AMERICAN POMOLOGICAL SOCIETY
LA English
DT Article
DE climate; weather; energy balance; radiation; convection; conduction;
latent heat
AB Protected cultivation is a broad term commonly used among producers of specialty crops. Techniques can range from complex fixed structures to field site selection, to straightforward cultural practices in the field. This introduction to the ASHS workshop "Protected cultivation for fruit crops" considers techniques of protected cultivation in the broad sense. The text presents the physical principles associated with protected cultivation, namely heat transfer to and from the crop as expressed by the surface energy balance concept. Common terminology is introduced with respect to spatial and temporal scales. The four modes of heat transfer arc discussed via the energy balance equation: radiation, convection, conduction, and latent heat fluxes. Illustrative examples of current practices in protected cultivation are provided in the context of the aforementioned physical principles.
C1 USDA ARS, Hort Crops Res Unit, Prosser, WA 99350 USA.
RP Tarara, JM (reprint author), USDA ARS, Hort Crops Res Unit, 24106 N Bunn Rd, Prosser, WA 99350 USA.
NR 12
TC 0
Z9 0
U1 0
U2 0
PU AMER POMOLOGICAL SOC
PI UNIVERSITY PK
PA 102 TYSON BUILDING, UNIVERSITY PK, PA 16802 USA
SN 1527-3741
J9 J AM POMOL SOC
JI J. Amer. Pomolog. Soc.
PD JAN
PY 2013
VL 67
IS 1
BP 2
EP 6
PG 5
WC Agronomy; Horticulture
SC Agriculture
GA V36TC
UT WOS:000209232500001
ER
PT B
AU Crowder, DW
Ellsworth, PC
Naranjo, SE
Tabashnik, BE
Carriere, Y
AF Crowder, David W.
Ellsworth, Peter C.
Naranjo, Steven E.
Tabashnik, Bruce E.
Carriere, Yves
BE Devillers, J
TI Modeling Resistance to Juvenile Hormone Analogs Linking Evolution,
Ecology, and Management
SO JUVENILE HORMONES AND JUVENOIDS: MODELING BIOLOGICAL EFFECTS AND
ENVIRONMENTAL FATE
SE QSAR in Environmental and Health Sciences
LA English
DT Article; Book Chapter
DE Integrated pest management; Insect resistance management; Modeling;
Population genetics; Pyriproxyfen; Resistance evolution; Whitefly
ID INSECT GROWTH-REGULATORS; CORN-ROOTWORM COLEOPTERA; POTATO WHITEFLY
HOMOPTERA; BEMISIA-TABACI; BACILLUS-THURINGIENSIS; NATURAL ENEMIES;
SWEET-POTATO; B-BIOTYPE; PESTICIDE RESISTANCE; TRANSGENIC CORN
AB Juvenile hormone analogs (JHAs) are insecticides that mimic insect juvenile hormone and interfere with normal insect development. JHAs disrupt a hormonal system that is specific to insects and thus kill some target pests while causing less harm to nontarget organisms than broad-spectrum insecticides. JHAs have become increasingly important in agriculture worldwide, where their specificity and efficacy has been used selectively to reduce target pest populations while conserving key natural enemies. Evolution of resistance by target pests, however, can reduce the effectiveness of JHAs. This chapter reviews how models have been used to analyze the evolution of pest resistance to JHAs and to develop strategies to delay pest resistance. We describe results of general mathematical models and a case study showing how simulation, conceptual, and spatially explicit statistical models have been applied to better understand and manage evolution of resistance to the JHA pyriproxyfen by the whitefly, Bemisia tabaci. Our results show how genetic, ecological, and human factors affect evolution of pest resistance to JHAs. Integrating knowledge of these factors into models can help to produce useful predictions about pest resistance to JHAs and to improve management strategies for preserving the effectiveness of this important functional class of insecticides.
C1 [Crowder, David W.] Washington State Univ, Dept Entomol, Pullman, WA 99164 USA.
[Ellsworth, Peter C.; Tabashnik, Bruce E.; Carriere, Yves] Univ Arizona, Dept Entomol, Tucson, AZ 85721 USA.
[Naranjo, Steven E.] USDA, Arid Lands Res Ctr, Maricopa, AZ USA.
RP Crowder, DW (reprint author), Washington State Univ, Dept Entomol, Pullman, WA 99164 USA.
NR 122
TC 0
Z9 1
U1 0
U2 1
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4665-1322-8; 978-1-4665-1321-1
J9 QSAR ENVIRON HEALTH
PY 2013
BP 99
EP 126
D2 10.1201/b14899
PG 28
WC Biology; Endocrinology & Metabolism; Toxicology
SC Life Sciences & Biomedicine - Other Topics; Endocrinology & Metabolism;
Toxicology
GA BD4WK
UT WOS:000361147000007
ER
PT B
AU Dwyer, J
AF Dwyer, Johanna
BE Rippe, JM
TI Nutrition 101 The Concept of Nutritional Status and Guides for Nutrient
Intakes, Eating Patterns, and Nutrition
SO LIFESTYLE MEDICINE, 2ND EDITION
LA English
DT Article; Book Chapter
ID INDEX
C1 [Dwyer, Johanna] Tufts Univ, Off Dietary Supplements, NIH, Boston, MA 02111 USA.
[Dwyer, Johanna] Tufts Univ, Sch Med, Dept Med & Community Hlth, Friedman Sch Nutr Sci & Policy, Boston, MA 02111 USA.
[Dwyer, Johanna] Tufts Univ, Jean Mayer US Dept Agr, Human Nutr Ctr Aging, Boston, MA 02111 USA.
[Dwyer, Johanna] Tufts Med Ctr, Frances Stern Nutr Ctr, Boston, MA USA.
[Dwyer, Johanna] NIH, Off Dietary Supplements, Bethesda, MD 20892 USA.
RP Dwyer, J (reprint author), Tufts Univ, Off Dietary Supplements, NIH, Boston, MA 02111 USA.
NR 43
TC 0
Z9 0
U1 0
U2 0
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-4544-8; 978-1-4398-4542-4
PY 2013
BP 103
EP 117
PG 15
WC Public, Environmental & Occupational Health
SC Public, Environmental & Occupational Health
GA BF6FT
UT WOS:000383033900009
ER
PT B
AU Polon, RH
Stoody, EE
AF Polon, Rachel Hayes
Stoody, Eve Essery
BE Rippe, JM
TI Dietary Guidelines for Americans, 2010 National Nutrition Policy
SO LIFESTYLE MEDICINE, 2ND EDITION
LA English
DT Article; Book Chapter
ID PREVALENCE
C1 [Polon, Rachel Hayes] Food & Nutr Serv, USDA, Alexandria, VA 22302 USA.
[Stoody, Eve Essery] USDA, Ctr Nutr Policy & Promot, Alexandria, VA USA.
RP Polon, RH (reprint author), Food & Nutr Serv, USDA, Alexandria, VA 22302 USA.
NR 10
TC 1
Z9 1
U1 0
U2 0
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-4544-8; 978-1-4398-4542-4
PY 2013
BP 131
EP 147
PG 17
WC Public, Environmental & Occupational Health
SC Public, Environmental & Occupational Health
GA BF6FT
UT WOS:000383033900011
ER
PT B
AU Lichtenstein, AH
AF Lichtenstein, Alice H.
BE Rippe, JM
TI Optimal Nutrition Guidance for Older Adults
SO LIFESTYLE MEDICINE, 2ND EDITION
LA English
DT Article; Book Chapter
ID IMPAIRED GLUCOSE-TOLERANCE; LIFE-STYLE INTERVENTION; IOWA WOMENS HEALTH;
VITAMIN-D; ELDERLY POPULATION; BLOOD-PRESSURE; UNITED-STATES;
LACTOSE-MALABSORPTION; METABOLIC SYNDROME; COLON-CANCER
C1 [Lichtenstein, Alice H.] Tufts Univ, Nutr Sci & Policy, Boston, MA 02111 USA.
[Lichtenstein, Alice H.] Tufts Univ, Cardiovasc Nutr Lab, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
RP Lichtenstein, AH (reprint author), Tufts Univ, Nutr Sci & Policy, Boston, MA 02111 USA.
NR 75
TC 0
Z9 0
U1 0
U2 0
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-4544-8; 978-1-4398-4542-4
PY 2013
BP 177
EP 184
PG 8
WC Public, Environmental & Occupational Health
SC Public, Environmental & Occupational Health
GA BF6FT
UT WOS:000383033900014
ER
PT J
AU Magbanua, ZV
Williams, WP
Luthe, DS
AF Magbanua, Zenaida V.
Williams, W. Paul
Luthe, Dawn S.
TI The maize rachis affects Aspergillus flavus spread during ear
development
SO MAYDICA
LA English
DT Article
DE Zea mays; rachis; Aspergillus flavus; fluorescence microscopy
AB Aspergillus flavus that transgenically expressed the green fluorescent protein was used to follow infection in ears of maize hybrids resistant and susceptible to the fungus. Developing ears were needle-inoculated with GFP-transformed A. flavus 20 days after silk emergence, and GFP fluorescence in the pith was evaluated at 1, 2, 3, 4, 5, 10, and 20 days after inoculation. Fluorescence levels in the pith of susceptible lines were significantly higher (P < 0.0001) than in resistant lines at all time points. Pith sections apical to the inoculation point displayed higher fluorescence levels compared to other sections of the ear, suggesting fungal spread via the water/nutrient transport system. Fluorescence levels in resistant lines did not change significantly over time, implying spread of the fungus but not growth. Fluorescence in susceptible ears was highest at early time points, suggesting that conditions were more conducive to spread than at the later time points. These results suggest that the rachis could retard the spread and/or growth of the fungus inside the developing maize ear. Although fluorescence was observed in kernels from resistant ears, it occurred at a much higher frequency in those from susceptible hybrids. Together, these results suggest that the rachis is used by maize as a defense structure similar to other preformed types of resistance.
C1 [Magbanua, Zenaida V.; Luthe, Dawn S.] Mississippi State Univ, Dept Biochem & Mol Biol, Mississippi State, MS 39762 USA.
[Williams, W. Paul] ARS, USDA, Corn Host Plant Resistance Res Unit, Mississippi State, MS 39762 USA.
RP Luthe, DS (reprint author), Penn State Univ, Dept Crop & Soil Sci, 116 ASI, University Pk, PA 16802 USA.
EM dsl14@psu.edu
FU US Department of Agriculture, Agricultural Research Service
[58-6406-1-100]; Mississippi Agricultural and Forestry Experiment
Station
FX This research was funded by the US Department of Agriculture,
Agricultural Research Service through Specific Cooperative Agreement No.
58-6406-1-100 with the Mississippi Agricultural and Forestry Experiment
Station. Dr. Gary Payne of North Carolina State University kindly
provided the GFP-transformed A. flavus strain used in this research.
NR 21
TC 5
Z9 5
U1 1
U2 3
PU MAYDICA-IST SPER CEREALICOLTUR
PI BERGAMO
PA SEZ DI BERGAMO VIA STEZZANO, 24, 24100 BERGAMO, ITALY
SN 0025-6153
EI 2279-8013
J9 MAYDICA
JI Maydica
PY 2013
VL 58
IS 1-4
SI SI
BP 182
EP 188
PG 7
WC Agronomy; Plant Sciences
SC Agriculture; Plant Sciences
GA V35ZF
UT WOS:000209182800019
ER
PT S
AU Poach, ME
Ro, KS
Hunt, PG
AF Poach, M. E.
Ro, K. S.
Hunt, P. G.
BE DeLaune, RD
Reddy, KR
Richardson, CJ
Megonigal, JP
TI Wind Tunnel Method for Measurement of Ammonia Volatilization
SO METHODS IN BIOGEOCHEMISTRY OF WETLANDS
SE Soil Science Society of America Book Series
LA English
DT Article; Book Chapter
ID ANAEROBIC SWINE LAGOONS; CONSTRUCTED WETLANDS; WASTE-WATER; EMISSIONS;
MODEL; LOSSES; GAS
AB Because aqueous NH3 concentration and pH are important drivers of NH3 volatilization, volatilization can be a significant mechanism for N loss from wetlands under high NH3 loads or alkaline pH values. To measure NH3 volatilization from wetlands, enclosure methods are preferred when site conditions preclude micrometeorological techniques. This chapter describes a wind tunnel enclosure to measure NH3 volatilization. The tunnel system is open ended and incorporates the following design elements: (i) a tunnel-shaped working section to enclose the experimental plot (including wetland plants), (ii) variable-speed fan(s) or blower(s) to generate airflow through the tunnel, (iii) airflow conditioning sections, and (iv) a structure to produce laminar airflow. The size of the tunnel and materials used in its construction are dictated by the site conditions. Air flow through the tunnel is monitored with anemometers. Sampling of NH3 is accomplished by using vacuum pumps to pass a known proportion of the air entering and exiting the tunnel through an acid that will absorb the NH3. The rate of volatilization is calculated using the amount of sampled NH3, the ratio of airflow rate to sampling rate, and the sampling duration.
C1 [Poach, M. E.] James J Howard Marine Sci Lab, Highlands, NJ 07732 USA.
[Ro, K. S.; Hunt, P. G.] USDA ARS, Coastal Plains Soil Water & Plant Res Ctr, Florence, SC 29501 USA.
RP Poach, ME (reprint author), James J Howard Marine Sci Lab, Highlands, NJ 07732 USA.
EM Matthew.Poach@noaa.gov; Kyoung.Ro@ars.usda.gov;
Patrick.Hunt@ars.usda.gov
NR 23
TC 0
Z9 0
U1 2
U2 4
PU SOIL SCIENCE SOC AMER
PI MADISON
PA 677 S SEGOE RD, MADISON, WI 53711 USA
SN 1047-4986
BN 978-0-89118-961-9; 978-0-89118-960-2
J9 SSSA BOOK S
PY 2013
VL 10
BP 473
EP 484
DI 10.2136/sssabookser10.c25
D2 10.2136/sssabookser10
PG 12
WC Environmental Sciences; Soil Science; Water Resources
SC Environmental Sciences & Ecology; Agriculture; Water Resources
GA BE3JH
UT WOS:000370800500027
ER
PT S
AU Goldberg, S
Manning, BA
AF Goldberg, Sabine
Manning, Bruce A.
BE DeLaune, RD
Reddy, KR
Richardson, CJ
Megonigal, JP
TI Speciation of Arsenic(III)/Arsenic(V) and Selenium(IV)/Selenium(VI)
Using Coupled Ion Chromatography-Hydride Generation Atomic Absorption
Spectrometry
SO METHODS IN BIOGEOCHEMISTRY OF WETLANDS
SE Soil Science Society of America Book Series
LA English
DT Article; Book Chapter
ID PERFORMANCE LIQUID-CHROMATOGRAPHY; WATER SAMPLES; ARSENIC SPECIATION;
SELENIUM-COMPOUNDS; SEDIMENTS; REDUCTION; OXIDATION; TRANSFORMATIONS;
STABILITY; SE(VI)
AB Simple analytical methods have been developed to speciate inorganic As and Se in the microgram per liter range using coupled ion chromatography-hydride generation atomic absorption spectrometry. Because of the differences in toxicity and adsorption behavior, determinations of the redox states arsenite, As(III), and arsenate, As(V), and selenite, Se(IV), and selenate, Se(VI), are important. Anion exchange chromatography is used to separate As(III) and As(V) or Se(IV) and Se(VI) based on differences in retention times. Samples are then mixed with concentrated HCl for As or Se determination as the hydrides. Detection limits are 0.8 mg L-1 As for both redox states, 0.68 mg L-1 for Se(IV), and 0.55 mg L-1 for Se(VI). Spiking of actual mixed sample solutions of both redox states showed the procedure to be accurate for solutions with As(III)/As(V) or Se(IV)/Se(VI) ratios ranging from 1:4 to 4:1. Average recoveries were 95.7% for As (III), 106% for As(V), 93.1% for Se(IV), and 108% for Se(VI). The technique can be used to determine As(III) and As(V) and Se(IV) and Se(VI) in deionized water and actual and synthetic irrigation waters.
C1 [Goldberg, Sabine] USDA ARS, US Salin Lab, 450 W Big Springs Rd, Riverside, CA 92507 USA.
[Manning, Bruce A.] San Francisco State Univ, Dept Chem & Biochem, San Francisco, CA 94132 USA.
RP Goldberg, S (reprint author), USDA ARS, US Salin Lab, 450 W Big Springs Rd, Riverside, CA 92507 USA.
EM Sabine.Goldberg@ars.usda.gov; bmanning@sfsu.edu
NR 36
TC 0
Z9 1
U1 1
U2 1
PU SOIL SCIENCE SOC AMER
PI MADISON
PA 677 S SEGOE RD, MADISON, WI 53711 USA
SN 1047-4986
BN 978-0-89118-961-9; 978-0-89118-960-2
J9 SSSA BOOK S
PY 2013
VL 10
BP 801
EP 814
DI 10.2136/sssabookser10.c41
D2 10.2136/sssabookser10
PG 14
WC Environmental Sciences; Soil Science; Water Resources
SC Environmental Sciences & Ecology; Agriculture; Water Resources
GA BE3JH
UT WOS:000370800500043
ER
PT S
AU Douds, DD
Seidel, R
AF Douds, David D., Jr.
Seidel, Rita
BE Cheeke, TE
Coleman, DC
Wall, DH
TI The contribution of arbuscular mycorrhizal fungi to the success or
failure of agricultural practices
SO MICROBIAL ECOLOGY IN SUSTAINABLE AGROECOSYSTEMS
SE Advances in Agroecology
LA English
DT Article; Book Chapter
ID LONG-TERM TILLAGE; CROP-ROTATION; COVER-CROP; NO-TILL; SOIL DISTURBANCE;
COMMUNITY STRUCTURE; WEED MANAGEMENT; NUTRIENT-UPTAKE; WINTER-WHEAT; VAM
FUNGI
C1 [Douds, David D., Jr.] ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
[Seidel, Rita] Rodale Inst, Kutztown, PA USA.
RP Douds, DD (reprint author), ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
NR 134
TC 2
Z9 2
U1 3
U2 4
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
SN 2153-9847
BN 978-1-4398-5297-2; 978-1-4398-5296-5
J9 ADV AGROECOL
JI Adv. Agroecol.
PY 2013
BP 133
EP 152
PG 20
WC Agriculture, Multidisciplinary; Ecology; Microbiology
SC Agriculture; Environmental Sciences & Ecology; Microbiology
GA BD5YE
UT WOS:000361893100009
ER
PT J
AU Allen, HK
Bunge, J
Foster, JA
Bayles, DO
Stanton, TB
AF Allen, Heather K.
Bunge, John
Foster, James A.
Bayles, Darrell O.
Stanton, Thaddeus B.
TI Estimation of viral richness from shotgun metagenomes using a frequency
count approach
SO MICROBIOME
LA English
DT Article
DE Phage; Metagenomics; Virome; Ecology; Richness; CatchAll; Singleton
AB Background: Viruses are important drivers of ecosystem functions, yet little is known about the vast majority of viruses. Viral shotgun metagenomics enables the investigation of broad ecological questions in phage communities. One ecological characteristic is species richness, which is the number of different species in a community. Viruses do not have a phylogenetic marker analogous to the bacterial 16S rRNA gene with which to estimate richness, and so contig spectra are employed to measure the number of virus taxa in a given community. A contig spectrum is generated from a viral shotgun metagenome by assembling the random sequence reads into groups of sequences that overlap (contigs) and counting the number of sequences that group within each contig. Current tools available to analyze contig spectra to estimate phage richness are limited by relying on rank-abundance data.
Results: We present statistical estimates of virus richness from contig spectra. The program CatchAll (http://www.northeastern.edu/catchall/) was used to analyze contig spectra in terms of frequency count data rather than rankabundance, thus enabling formal statistical analyses. Also, the influence of potentially spurious low-frequency counts on richness estimates was minimized by two methods, empirical and statistical. The results show greater estimates of viral richness than previous calculations in nearly all environments analyzed, including swine feces and reclaimed fresh water.
Conclusions: CatchAll yielded consistent estimates of richness across viral metagenomes from the same or similar environments. Additionally, analysis of pooled viral metagenomes from different environments via mixed contig spectra resulted in greater richness estimates than those of the component metagenomes. Using CatchAll to analyze contig spectra will improve estimations of richness from viral shotgun metagenomes, particularly from large datasets, by providing statistical measures of richness.
C1 [Allen, Heather K.; Stanton, Thaddeus B.] ARS, Food Safety & Enter Pathogens Res Unit, Natl Anim Dis Ctr, Ames, IA 50010 USA.
[Bunge, John] Cornell Univ, Dept Stat Sci, Ithaca, NY 14583 USA.
[Foster, James A.] Univ Idaho, Inst Bioinformat & Evolutionary Studies, Dept Biol Sci, Moscow, ID 83844 USA.
[Bayles, Darrell O.] ARS, Infect Bacterial Dis Res Unit, Natl Anim Dis Ctr, Ames, IA 50010 USA.
RP Allen, HK (reprint author), ARS, Food Safety & Enter Pathogens Res Unit, Natl Anim Dis Ctr, Ames, IA 50010 USA.
EM heather.allen@ars.usda.gov
FU NIH COBRE grant [P20RR16448]; NIH INBRE grant [P20RR016454]; NSF STC
"BEACON Center for the Study of Evolution in Action" [NSF STC
DBI-0939454]
FX The authors thank Linda Woodard and Samuel Humphrey for technical
support, and Uri Levine, Thomas Casey, Brian Brunelle, Torey Looft and
Patrick Schloss for helpful discussions or comments on the manuscript.
JAF was partially supported by NIH COBRE grant P20RR16448, NIH INBRE
grant P20RR016454 and NSF STC "BEACON Center for the Study of Evolution
in Action" NSF STC DBI-0939454. Mention of trade names or commercial
products in this publication is solely for the purpose of providing
specific information and does not imply recommendation or endorsement by
the U.S Department of Agriculture. USDA is an equal opportunity provider
and employer.
NR 24
TC 11
Z9 11
U1 2
U2 5
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 2049-2618
J9 MICROBIOME
JI Microbiome
PY 2013
VL 1
AR 5
DI 10.1186/2049-2618-1-5
PG 7
WC Microbiology
SC Microbiology
GA V40VZ
UT WOS:000209507400005
PM 24451229
ER
PT J
AU Mattison, CP
Desormeaux, WA
Grimm, CC
Wasserman, RL
AF Mattison, C. P.
Desormeaux, W. A.
Grimm, C. C.
Wasserman, R. L.
TI Purification and characterization of the cashew nut 2S albumin allergen
Ana o 3
SO MOLECULAR BIOLOGY OF THE CELL
LA English
DT Meeting Abstract
C1 [Mattison, C. P.; Desormeaux, W. A.; Grimm, C. C.] USDA ARS, New Orleans, LA USA.
[Wasserman, R. L.] Allergy Immunol Res Ctr North Texas, Frisco, TX USA.
NR 0
TC 0
Z9 0
U1 2
U2 3
PU AMER SOC CELL BIOLOGY
PI BETHESDA
PA 8120 WOODMONT AVE, STE 750, BETHESDA, MD 20814-2755 USA
SN 1059-1524
EI 1939-4586
J9 MOL BIOL CELL
JI Mol. Biol. Cell
PY 2013
VL 24
MA 1535
PG 1
WC Cell Biology
SC Cell Biology
GA V38MY
UT WOS:000209348703030
ER
PT J
AU Millar, JA
McNulty, SN
Zarlenga, DS
Mitreva, M
AF Millar, J. A.
McNulty, S. N.
Zarlenga, D. S.
Mitreva, M.
TI Transcriptional Profiling of Ivermectin Resistant Cooperia punctata
Using Deep Sequencing
SO MOLECULAR BIOLOGY OF THE CELL
LA English
DT Meeting Abstract
C1 [Millar, J. A.] Portland State Univ, Dept Biol, Portland, OR 97207 USA.
[Millar, J. A.; McNulty, S. N.; Mitreva, M.] Washington Univ, Sch Med, Genome Inst, St Louis, MO USA.
[Zarlenga, D. S.] USDA, Anim Parasit Dis Lab, Beltsville, MD 20705 USA.
[Mitreva, M.] Washington Univ, Sch Med, Dept Med, Div Infect Dis, St Louis, MO 63110 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU AMER SOC CELL BIOLOGY
PI BETHESDA
PA 8120 WOODMONT AVE, STE 750, BETHESDA, MD 20814-2755 USA
SN 1059-1524
EI 1939-4586
J9 MOL BIOL CELL
JI Mol. Biol. Cell
PY 2013
VL 24
MA 1026
PG 1
WC Cell Biology
SC Cell Biology
GA V38MY
UT WOS:000209348701350
ER
PT J
AU Reed, TL
Hume, M
Carson, L
Hernandez, C
Regisford, E
AF Reed, T. L.
Hume, M.
Carson, L.
Hernandez, C.
Regisford, E.
TI Anti-Salmonella Typhimurium Comparisons of Broad-Range Molecular Weight
Chitosan Commercial Preparations and Specific Molecular Weight Chitosan
Laboratory Preparations
SO MOLECULAR BIOLOGY OF THE CELL
LA English
DT Meeting Abstract
C1 [Reed, T. L.] Prairie View, Prairie View, TX USA.
[Hume, M.; Hernandez, C.] ARS, USDA, SPARC, FFSRU, College Stn, TX USA.
[Carson, L.] Prairie View, Cooperat Agr Res Ctr, Prairie View, TX USA.
[Regisford, E.] Prairie View, Biol, Prairie View, TX USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU AMER SOC CELL BIOLOGY
PI BETHESDA
PA 8120 WOODMONT AVE, STE 750, BETHESDA, MD 20814-2755 USA
SN 1059-1524
EI 1939-4586
J9 MOL BIOL CELL
JI Mol. Biol. Cell
PY 2013
VL 24
MA 1078
PG 2
WC Cell Biology
SC Cell Biology
GA V38MY
UT WOS:000209348701402
ER
PT B
AU Meerow, AW
AF Meerow, Alan W.
BE Kamenetsky, R
Okubo, H
TI Taxonomy and Phylogeny
SO ORNAMENTAL GEOPHYTES: FROM BASIC SCIENCE TO SUSTAINABLE PRODUCTION
LA English
DT Article; Book Chapter
ID INTERNAL TRANSCRIBED SPACER; NUCLEAR RIBOSOMAL DNA; ALLIUM SUBG.
MELANOCROMMYUM; MOLECULAR PHYLOGENY; SEQUENCE DATA; PLASTID DNA;
COSTACEAE ZINGIBERALES; DAHLIA ASTERACEAE; NONCODING DNA; GENOME SIZE
C1 ARS, USDA, SHRS, Natl Germplasm Repository, Miami, FL 33157 USA.
RP Meerow, AW (reprint author), ARS, USDA, SHRS, Natl Germplasm Repository, Miami, FL 33157 USA.
NR 348
TC 2
Z9 2
U1 0
U2 2
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-4925-5; 978-1-4398-4924-8
PY 2013
BP 17
EP 55
PG 39
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BD5UZ
UT WOS:000361834500004
ER
PT B
AU Kamo, KK
Krens, FA
Ziv, M
AF Kamo, Kathryn K.
Krens, Frans A.
Ziv, Meira
BE Kamenetsky, R
Okubo, H
TI Biotechnology for the Modification of Horticultural Traits in Geophytes
SO ORNAMENTAL GEOPHYTES: FROM BASIC SCIENCE TO SUSTAINABLE PRODUCTION
LA English
DT Article; Book Chapter
ID AGROBACTERIUM-MEDIATED TRANSFORMATION; CUCUMBER-MOSAIC-VIRUS; TRANSGENIC
TOBACCO PLANTS; CROCUS-SATIVUS L.; MADS-BOX GENES; SPECTRUM DISEASE
RESISTANCE; LILY LILIUM-LONGIFLORUM; DEMONSTRATE ENHANCED RESISTANCE;
RIBOSOME-INACTIVATING PROTEIN; VACUOLAR IRON TRANSPORTER
C1 [Kamo, Kathryn K.] USDA, Floral & Nursery Plants Res Unit, Beltsville, MD 20705 USA.
[Krens, Frans A.] Univ Wageningen & Res Ctr, Plant Breeding, Wageningen, Netherlands.
[Ziv, Meira] Hebrew Univ Jerusalem, RH Smith Inst Plant Sci & Genet, IL-76100 Rehovot, Israel.
RP Kamo, KK (reprint author), USDA, Floral & Nursery Plants Res Unit, Beltsville, MD 20705 USA.
NR 290
TC 0
Z9 0
U1 0
U2 1
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-4925-5; 978-1-4398-4924-8
PY 2013
BP 159
EP 195
PG 37
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BD5UZ
UT WOS:000361834500009
ER
PT B
AU Reid, MS
Jiang, CZ
AF Reid, Michael S.
Jiang, Cai-Zhong
BE Kamenetsky, R
Okubo, H
TI Postharvest Cut Flowers and Potted Plants
SO ORNAMENTAL GEOPHYTES: FROM BASIC SCIENCE TO SUSTAINABLE PRODUCTION
LA English
DT Article; Book Chapter
ID PROGRAMMED CELL-DEATH; DIANTHUS-CARYOPHYLLUS L; GLORY IPOMOEA-NIL;
ABSCISIC-ACID; VASE LIFE; PETAL SENESCENCE; CARNATION FLOWERS;
GENE-EXPRESSION; ETHYLENE PRODUCTION; LEAF SENESCENCE
C1 [Reid, Michael S.] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[Jiang, Cai-Zhong] ARS, Crops Pathol & Genet Res Unit, USDA, Davis, CA USA.
RP Reid, MS (reprint author), Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
NR 145
TC 0
Z9 0
U1 0
U2 0
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-4925-5; 978-1-4398-4924-8
PY 2013
BP 333
EP 361
PG 29
WC Plant Sciences; Horticulture
SC Plant Sciences; Agriculture
GA BD5UZ
UT WOS:000361834500014
ER
PT J
AU Boal, CW
Wunderle, JM
Arendt, WJ
AF Boal, Clint W.
Wunderle, Joseph M., Jr.
Arendt, Wayne J.
TI AUTUMN MONITORING OF RESIDENT AVIFAUNA ON GUANA ISLAND, BRITISH VIRGIN
ISLANDS
SO ORNITOLOGIA NEOTROPICAL
LA English
DT Article
DE Bananaquit; Coereba flaveola; Pearly-eyed Thrasher; Margarops fuscatus;
avifaunal richness; monitoring; species composition; surveys; British
Virgin Islands; Guana Island
AB Although the Caribbean region is considered a biodiversity hotspot and a priority for ecological conservation efforts, little information exists on population trends of West Indian landbirds. We combined avian survey data collected from three studies spanning a 16-year period on a small island with a minimal human presence in the British Virgin Islands. Although abundances varied among surveys, the same species were detected with rare exceptions. Despite stability in species composition, the resident landbirds were variable in their individual detectabilities. Survey detections relatively mirrored net captures for some species, but are quite different for others. We suspect that this is likely due to differences in detectability due to species-specific behaviors mediated by environmental conditions, such as rainfall, during the month or months prior to our surveys. It is difficult to assess the influence of timing or amount of precipitation on bird detections rates among our surveys due to a lack of consistent collection of location-specific weather data in the British Virgin Islands. Our study suggests monitoring efforts conducted in concert with collection of site-specific climate data would facilitate improved interpretation of survey data and a better understanding of avian species response to climate mediated changes.
C1 [Boal, Clint W.] Texas Tech Univ, US Geol Survey, Texas Cooperat Fish & Wildlife Res Unit, Lubbock, TX 79409 USA.
[Wunderle, Joseph M., Jr.; Arendt, Wayne J.] USDA, Forest Serv, Int Inst Trop Forestry, Sabana Field Res Stn, Luquillo, PR 00773 USA.
RP Boal, CW (reprint author), Texas Tech Univ, US Geol Survey, Texas Cooperat Fish & Wildlife Res Unit, Lubbock, TX 79409 USA.
EM clint.boal@ttu.edu
FU Falconwood Foundation; Conservation Agency for facilitating our
continued access to Guana Island; USGS Cooperative Research Units
FX Our thanks go to the Falconwood Foundation, and The Conservation Agency
for facilitating our continued access to Guana Island and their support
for this research, and to the USGS Cooperative Research Units for
supporting this research. We thank J. W Beltran for providing a Spanish
abstract for this manuscript, J. D. Lazell and G. Perry for coordinating
research opportunities on Guana Island, and to the many volunteers that
have assisted in the ornithological research program on the island. Any
use of trade, product, or firm names is for descriptive purposes only
and does not imply endorsement by the US. Government. This manuscript
benefitted from the thoughtful reviews and suggestions of B. Bibles and
G. Perry. The 1994 and 2001 research was conducted in cooperation with
the University of Puerto Rico. The study in 2007-2009 was conducted
under Texas Tech University Animal Care and Use Protocol No. 12053-07.
NR 36
TC 0
Z9 0
U1 0
U2 1
PU NEOTROPICAL ORNITHOLOGICAL SOC, USGS PATUXENT WILDLIFE RESEARCH CTR
PI ATHENS
PA UNIV GEORGIA, WARNELL SCH FOREST RESOURCES, ATHENS, GA 30602-2152 USA
SN 1075-4377
J9 ORNITOL NEOTROP
JI ORNITOL. NEOTROP.
PY 2013
VL 24
IS 3
BP 335
EP 343
PG 9
WC Ornithology
SC Zoology
GA V36WQ
UT WOS:000209238900008
ER
PT B
AU Austin, DF
Jarret, R
AF Austin, Daniel F.
Jarret, Robert
BE Eshel, A
Beeckman, T
TI Roots as a Source of Food
SO PLANT ROOTS: THE HIDDEN HALF, 4TH EDITION
LA English
DT Article; Book Chapter
ID MANIHOT-ESCULENTA CRANTZ; POTATO IPOMOEA-BATATAS;
FRAGMENT-LENGTH-POLYMORPHISMS; APIACEAE TRIBE OENANTHEAE;
APIOS-AMERICANA LEGUMINOSAE; ESSENTIAL OIL COMPOSITION; PLANT
GENETIC-RESOURCES; DAUCUS-CAROTA COMPLEX; IN-SITU CONSERVATION;
NUCLEAR-DNA CONTENT
C1 [Austin, Daniel F.] Arizona Sonora Desert Museum, Ctr Sonoran Desert Studies, Tucson, AZ 85743 USA.
[Jarret, Robert] ARS, USDA, Plant Genet Resources, Griffin, GA USA.
RP Austin, DF (reprint author), Arizona Sonora Desert Museum, Ctr Sonoran Desert Studies, Tucson, AZ 85743 USA.
NR 365
TC 0
Z9 0
U1 1
U2 1
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-4649-0; 978-1-4398-4648-3
PY 2013
PG 25
WC Plant Sciences
SC Plant Sciences
GA BC9KQ
UT WOS:000356526000030
ER
PT B
AU Matthews, BF
Ibrahim, HMM
Hosseini, P
Alkharouf, N
Natarajan, SS
AF Matthews, Benjamin F.
Ibrahim, Heba M. M.
Hosseini, Parsa
Alkharouf, Nadim
Natarajan, Savithiry S.
BE Eshel, A
Beeckman, T
TI Response of Soybean Roots to Soybean Cyst Nematode at the Molecular
Level
SO PLANT ROOTS: THE HIDDEN HALF, 4TH EDITION
LA English
DT Article; Book Chapter
ID LASER CAPTURE MICRODISSECTION; 2-DIMENSIONAL GEL-ELECTROPHORESIS;
PLANT-PARASITIC NEMATODES; CAENORHABDITIS-ELEGANS PROTEINS;
HETERODERA-GLYCINES; PROTEOMIC ANALYSIS; GENE-EXPRESSION;
MASS-SPECTROMETRY; MELOIDOGYNE-INCOGNITA; KNOT NEMATODE
C1 [Matthews, Benjamin F.; Ibrahim, Heba M. M.; Hosseini, Parsa; Natarajan, Savithiry S.] ARS, Soybean Genom & Improvement Lab, USDA, Beltsville, MD 20705 USA.
[Ibrahim, Heba M. M.] Cairo Univ, Dept Genet, Fac Agr, Giza, Egypt.
[Hosseini, Parsa; Alkharouf, Nadim] Towson Univ, Dept Comp & Informat Sci, Towson, MD USA.
RP Matthews, BF (reprint author), ARS, Soybean Genom & Improvement Lab, USDA, Beltsville, MD 20705 USA.
NR 92
TC 0
Z9 0
U1 0
U2 0
PU CRC PRESS-TAYLOR & FRANCIS GROUP
PI BOCA RATON
PA 6000 BROKEN SOUND PARKWAY NW, STE 300, BOCA RATON, FL 33487-2742 USA
BN 978-1-4398-4649-0; 978-1-4398-4648-3
PY 2013
PG 15
WC Plant Sciences
SC Plant Sciences
GA BC9KQ
UT WOS:000356526000041
ER
PT S
AU Panagopoulos, Y
Gassman, PW
Kling, CL
Campbell, T
Jha, M
Srinivasan, R
White, M
Arnold, JG
AF Panagopoulos, Yiannis
Gassman, Philip W.
Kling, Catherine L.
Campbell, Todd
Jha, Manoj
Srinivasan, Raghavan
White, Michael
Arnold, Jeffrey G.
BE Lekkas, TD
TI THE DEVELOPMENT OF SWAT MODELLING SYSTEMS FOR LARGE CORN BELT RIVER
BASINS PART 2: MODEL PERFORMANCE AND EVALUATION
SO PROCEEDINGS OF THE 13TH INTERNATIONAL CONFERENCE ON ENVIRONMENTAL
SCIENCE AND TECHNOLOGY
SE Proceedings of the International Conference on Environmental Science and
Technology
LA English
DT Proceedings Paper
CT 13th International Conference on Environmental Science and Technology
(CEST)
CY SEP 05-07, 2013
CL Athens, GREECE
SP Univ Aegean, Global Network Environm Sci & Technol
DE calibration; model predictions; nonpoint source pollution; nitrogen;
OTRB; phosphorus; river basin management; SWAT; UMRB
ID WATER-QUALITY; SOURCE AREAS; CALIBRATION; VALIDATION
AB Agricultural nonpoint source pollution is the main source of Nitrogen and Phosphorus in the intensely row-cropped Upper Mississippi River Basin (UMRB) and Ohio-Tennessee River Basin (OTRB) stream systems, and is considered the primary cause of the Northern Gulf of Mexico hypoxic zone according to the US Environmental Protection Agency. Thus, this region mostly located in the Midwestern USA, provides a natural location for research on how intensive agriculture for food, feed and biofuel production can coexist with a healthy environment. The use of a process-based hydrologic and water quality model is considered indispensable to address this objective at such a large spatial scale. An integrated modeling system has been constructed with the hydrologic Soil and Water Assessment Tool (SWAT) model (see Part 1 paper describing overall modeling system), capable of estimating river basin responses to alternative cropping and/or management strategies. To facilitate the identification of optimum locations for a cost-effective river basin management, this SWAT large-scale application incorporates a greatly refined subwatershed structure based on the 12-digit hydrologic units (subwatersheds), while the land phase of the hydrologic and nutrient cycles are calculated at thousands of Hydrologic Response Units, which represent unique combinations of land, soil and topographical features. However, given the very large scale and the need to ensure the reliability of flow and pollutant load predictions at various locations within such hydrologic systems, a model's calibration becomes a time-demanding and challenging task. The purpose of the current article is to demonstrate a semi-automatic calibration approach for large-scale and spatially detailed modeling studies, with the use of the Sequential Uncertainty Fitting algorithm (SUFI-2) and the SWAT-CUP interface developed exclusively for SWAT hydrologic projects. The calibration framework provides estimates of the uncertainty of predictions at various locations and can be finalized within a reasonable timeframe with a powerful personal computer (PC). This study presents the whole calibration approach providing guidance on similar efforts at the regional scale.
C1 [Panagopoulos, Yiannis; Gassman, Philip W.; Kling, Catherine L.; Campbell, Todd] Iowa State Univ, Ctr Agr & Rural Dev, Ames, IA 50010 USA.
[Jha, Manoj] North Carolina A&T State Univ, Dept Civil Engn, Greensboro, NC 27410 USA.
[Srinivasan, Raghavan] Texas A&M Univ, Spatial Sci Lab, College Stn, TX 77845 USA.
[White, Michael; Arnold, Jeffrey G.] USDA ARS, Grassland Soil & Water Res Lab, Temple, TX 76502 USA.
RP Panagopoulos, Y (reprint author), Iowa State Univ, Ctr Agr & Rural Dev, Ames, IA 50010 USA.
EM ypanag@iastate.edu
RI Srinivasan, R/D-3937-2009
FU National Science Foundation [DEB1010259]; U.S. Department of
Agriculture; National Institute of Food and Agriculture [20116800230190]
FX This research was partially funded by the National Science Foundation,
Award No. DEB1010259, "Understanding Land Use Decisions & Watershed
Scale Interactions: Water Quality in the Mississippi River Basin &
Hypoxic Conditions in the Gulf of Mexico" and by the U.S. Department of
Agriculture, National Institute of Food and Agriculture, Award No.
20116800230190, "Climate Change, Mitigation, and Adaptation In
Corn-Based Cropping Systems."
NR 19
TC 0
Z9 0
U1 0
U2 1
PU GLOBAL NEST, SECRETARIAT
PI ATHENS
PA UNIV, AEGEAN, 30, VOULGAROKTONOU STR, ATHENS, GR 114 72, GREECE
SN 1106-5516
BN 978-960-7475-51-0
J9 PROC INT CONF ENV SC
PY 2013
PG 8
WC Engineering, Environmental; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA BB7WL
UT WOS:000346067900261
ER
PT S
AU Johnson, DA
Bushman, BS
Jones, TA
Bhattarai, K
AF Johnson, Douglas A.
Bushman, B. Shaun
Jones, Thomas A.
Bhattarai, Kishor
BE Luttge, U
Beyschlag, W
Francis, D
Cushman, J
TI Identifying Geographically Based Metapopulations for Development of
Plant Materials Indigenous to Rangeland Ecosystems of the Western USA
SO PROGRESS IN BOTANY 74
SE Progress in Botany
LA English
DT Article; Book Chapter
ID CONTERMINOUS UNITED-STATES; POPULATION-STRUCTURE; GENETIC DIVERSITY;
ASTRAGALUS-FILIPES; MOLECULAR MARKERS; BASALT MILKVETCH; CHLOROPLAST
DNA; CLIMATE-CHANGE; NORTH-AMERICA; GREAT-BASIN
AB Rangeland ecosystems account for about half of the earth's land surface. They play an important role in providing forage for livestock and wildlife, and they serve as critical watershed areas. Many of the world's rangelands have been degraded by overgrazing, marginal crop production, mineral and energy extraction, recreation, and other human-caused disturbances. This degradation has led to invasion by exotic weeds and subsequent increases in fire frequency. This, in combination with uncertainties associated with global climatic change, has resulted in a critical need for plant materials to restore and revegetate rangeland ecosystems. The assessment of genetic variation and its phenotypic expression in important rangeland plant species (especially forbs) is critical in defining population structures (genetically differentiated groups) that could be used in rangeland restoration/revegetation efforts. We used common-garden studies and DNA-based analysis of genetic variation to assess genetic diversity in three rangeland legume species indigenous to rangeland ecosystems of the Great Basin Region of the western USA. Results of these studies are presented as three case studies that describe data collection procedures, analysis, and interpretation used to identify population structures in each species. These data formed the basis for combining plant collections into geographically based metapopulations for these three legume species that are being used to develop plant materials for commercial seed production and subsequent use on rangelands of the Great Basin.
C1 [Johnson, Douglas A.; Bushman, B. Shaun; Jones, Thomas A.] Utah State Univ, USDA ARS, Forage & Range Res Lab, Logan, UT 84322 USA.
[Bhattarai, Kishor] Noble Fdn Inc, Forage Improvement Div, Ardmore, OK 73401 USA.
RP Johnson, DA (reprint author), Utah State Univ, USDA ARS, Forage & Range Res Lab, Logan, UT 84322 USA.
EM Doug.Johnson@ars.usda.gov
NR 118
TC 0
Z9 0
U1 0
U2 1
PU SPRINGER-VERLAG BERLIN
PI BERLIN
PA HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY
SN 0340-4773
BN 978-3-642-30967-0; 978-3-642-30966-3
J9 PROG BOT
JI Prog. Bot.
PY 2013
VL 74
BP 265
EP 291
DI 10.1007/978-3-642-30967-0_10
D2 10.1007/978-3-642-30967-0
PG 27
WC Plant Sciences
SC Plant Sciences
GA BC2XJ
UT WOS:000351426200010
ER
PT S
AU Logsdon, S
Berli, M
Horn, R
AF Logsdon, Sally
Berli, Markus
Horn, Rainer
BE Logsdon, S
Berli, M
Horn, R
TI Quantifying and Modeling Soil Structure Dynamics
SO QUANTIFYING AND MODELING SOIL STRUCTURE DYNAMICS, VOL 3
SE Advances in Agricultural Systems Modeling-Transdisciplinary Research
Synthesis and Applications
LA English
DT Article; Book Chapter
ID X-RAY MICROTOMOGRAPHY; COMPUTED-TOMOGRAPHY; PHYSICAL QUALITY;
PEDOTRANSFER FUNCTIONS; HYDRAULIC-PROPERTIES; POROUS-MEDIA;
NEUTRON-RADIOGRAPHY; PREFERENTIAL FLOW; ORGANIC-MATTER; ROOT-GROWTH
C1 [Logsdon, Sally] USDA ARS, Natl Lab Agr & Environm, 2110 Univ Blvd, Ames, IA 50011 USA.
[Berli, Markus] Desert Res Inst, Las Vegas, NV 89119 USA.
[Horn, Rainer] Univ Kiel, Inst Soil Sci, Plants, Nutr, D-24118 Kiel, Germany.
RP Logsdon, S (reprint author), USDA ARS, Natl Lab Agr & Environm, 2110 Univ Blvd, Ames, IA 50011 USA.
EM sally.logsdon@ars.usda.gov; markus.berli@dri.edu;
rhorn@soils.uni-kiel.de
NR 65
TC 0
Z9 0
U1 1
U2 1
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2163-2774
BN 978-0-89118-957-2; 978-0-89118-956-5
J9 ADV AGR SYST MODEL
PY 2013
VL 3
BP 1
EP 9
DI 10.2134/advagricsystmodel3.c1
D2 10.2134/advagricsystmodel3
PG 9
WC Agriculture, Multidisciplinary; Agronomy; Soil Science
SC Agriculture
GA BE3JE
UT WOS:000370798300003
ER
PT S
AU Logsdon, S
Berli, M
Horn, R
AF Logsdon, Sally
Berli, Markus
Horn, Rainer
BE Logsdon, S
Berli, M
Horn, R
TI Quantifying and Modeling Soil Structure Dynamics Preface
SO QUANTIFYING AND MODELING SOIL STRUCTURE DYNAMICS, VOL 3
SE Advances in Agricultural Systems Modeling-Transdisciplinary Research
Synthesis and Applications
LA English
DT Editorial Material; Book Chapter
C1 [Logsdon, Sally] USDA ARS, Natl Lab Agr & Environm, 2110 Univ Blvd, Ames, IA 50011 USA.
[Berli, Markus] Desert Res Inst, Las Vegas, NV 89119 USA.
[Horn, Rainer] Univ Kiel, Inst Soil Sci, Plants, Nutr, D-24118 Kiel, Germany.
RP Logsdon, S (reprint author), USDA ARS, Natl Lab Agr & Environm, 2110 Univ Blvd, Ames, IA 50011 USA.
EM sally.logsdon@ars.usda.gov; markus.berli@dri.edu;
rhorn@soils.uni-kiel.de
NR 0
TC 0
Z9 0
U1 0
U2 0
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2163-2774
BN 978-0-89118-957-2; 978-0-89118-956-5
J9 ADV AGR SYST MODEL
PY 2013
VL 3
BP IX
EP IX
D2 10.2134/advagricsystmodel3
PG 1
WC Agriculture, Multidisciplinary; Agronomy; Soil Science
SC Agriculture
GA BE3JE
UT WOS:000370798300002
ER
PT S
AU Mamedov, AI
Levy, GJ
AF Mamedov, A. I.
Levy, G. J.
BE Logsdon, S
Berli, M
Horn, R
TI High Energy Moisture Characteristics: Linking Between Some Soil Physical
Processes and Structure Stability
SO QUANTIFYING AND MODELING SOIL STRUCTURE DYNAMICS, VOL 3
SE Advances in Agricultural Systems Modeling-Transdisciplinary Research
Synthesis and Applications
LA English
DT Article; Book Chapter
ID SATURATED HYDRAULIC CONDUCTIVITY; AGGREGATE-SIZE DISTRIBUTION;
WATER-RETENTION CURVE; TREATED WASTE-WATER; CLAY MINERALOGY;
ORGANIC-MATTER; SEAL FORMATION; PORE-SIZE; PEDOTRANSFER FUNCTIONS;
PREFERENTIAL FLOW
AB Soil structure is the combination or arrangement of primary soil particles into secondary units that are characterized on the basis of size, shape, and grade. Stability of soil structure describes the ability of the soil to retain its arrangement of solid and pore space (i.e., aggregates and pores) when exposed to external forces (e.g., tillage, cropping, compaction and irrigation). Studying the effects of agricultural management practices on soil structure is important for the development of effective soil conservation practices to avoid risks of soil deterioration. The current review presents and discusses results of water retention curves at near saturation (matric potential, psi, 0 to -5 J kg(-1)) obtained by the High Energy Moisture Characteristic (HEMC) method for >200 soil samples from humid and arid zones. Quantifying differences in the water retention curves using the modified van Genuchten model (Soil-HEMC) yielded soil structure indices which were then used to elucidate in quantitative terms possible interactions among soil physical processes and management practices. Analyses of the water retention curves indicated that kaolinitic humid zone soils are (i) more stable than smectitc semiarid zone soils, and (ii) less sensitive to management, soil texture, organic matter content and wetting rate. Parameters of the van Genuchten model were successfully employed for evaluation of the contribution of large (>0.25-0.50 mm) and small (<0.25-0.50 mm) aggregates/particles to the pore size distribution and soil structure condition. The presented detailed analyses of the contribution of soil inherent properties and extrinsic conditions (e.g., spatiotemporal variation) to inter-and intra-aggregate porosity, the soil structure indices and model parameters at near saturation, sheds additional light on the processes that are involved in stabilizing soil structure, and may assist in developing more efficient soil and environment management practices.
C1 [Mamedov, A. I.] Kansas State Univ, USDA ARS, Engn & Wind Eros Res Unit, 1515 Coll Ave, Manhattan, KS 66502 USA.
[Levy, G. J.] Agr Res Org, Inst Soil Water & Environm Sci, IL-50250 Bet Dagan, Israel.
RP Mamedov, AI (reprint author), Kansas State Univ, USDA ARS, Engn & Wind Eros Res Unit, 1515 Coll Ave, Manhattan, KS 66502 USA.
EM am03@ksu.edu; vwguy@volcani.agri.gov.il
NR 106
TC 5
Z9 5
U1 1
U2 1
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2163-2774
BN 978-0-89118-957-2; 978-0-89118-956-5
J9 ADV AGR SYST MODEL
PY 2013
VL 3
BP 41
EP 74
DI 10.2134/advagricsystmodel3.c3
D2 10.2134/advagricsystmodel3
PG 34
WC Agriculture, Multidisciplinary; Agronomy; Soil Science
SC Agriculture
GA BE3JE
UT WOS:000370798300005
ER
PT B
AU Whitmore, C
Kauffman, M
Effner, S
AF Whitmore, Christa
Kauffman, Mary
Effner, Scat
BE Brown, A
Figueroa, L
Wolkersdorfer, C
TI Application of Column Leaching Tests to Predict Seepage Water Quality
from Waste Rock in the Southeast Idaho Phosphate District
SO RELIABLE MINE WATER TECHNOLOGY: PROCEEDINGS OF THE INTERNATIONAL MINE
WATER ASSOCIATION ANNUAL CONFERENCE 2013, VOLS I & II
LA English
DT Proceedings Paper
CT International Mine Water Association Annual Conference on Reliable Mine
Water Technology
CY AUG 06-09, 2013
CL Golden, CO
SP Int Mine Water Assoc, Colorado Sch Mines, Schlumberger Water Serv, ANGLOGOLD ASHANTI N AMER INC, BARRICK, Cripple Creek & Vector Gold Min Co, DHI, Golder Associates, NEWMONT, SIGMUND LINDNER, CH2MHILL, CMA COLORADO MIN ASSOC, FEFLOW
DE seepage chemistry column leaching tests; Southeast Idaho Phosphate
District
ID X-RAY-ABSORPTION; SELENIUM; ADSORPTION
AB Evaluation of waste rock seepage chemistry is a key component of baseline characterization work for phosphate mine permitting in southeast Idaho. Column leaching studies provide insight into chemical processes in waste rock dumps and pit backfills and can be used to predict metal mobility. This information can be used to improve the design and environmental performance of waste rock disposal facilities. This paper presents recommendations for development of a standard column testing method that will help ensure that leaching tests provide comparable data consistent with observed seepage chemistry from full-scale mine facilities in the Southeast Idaho Phosphate District.
C1 [Whitmore, Christa; Effner, Scat] Whetstone Associates Inc, 104 W Ruby Ave, Gunnison, CO 81230 USA.
[Kauffman, Mary] US Forest Serv, Caribou Targhee Natl Forest, Idaho Falls, ID 83401 USA.
RP Whitmore, C (reprint author), Whetstone Associates Inc, 104 W Ruby Ave, Gunnison, CO 81230 USA.
EM cwhitmore@whetstone-associates.com; mkauffman@fs.fed.us;
seffner@whetstone-associates.com
NR 17
TC 0
Z9 0
U1 0
U2 0
PU INT MINE WATER ASSOC
PI WENDELSTEIN
PA C/O PROF DR CHRISTIAN WOLKERSDORFER, GINSTERWEG 4, WENDELSTEIN, 90530,
GERMANY
BN 978-0-615-79385-6
PY 2013
BP 487
EP 492
PG 6
WC Mining & Mineral Processing; Water Resources
SC Mining & Mineral Processing; Water Resources
GA BG9XM
UT WOS:000394077700079
ER
PT B
AU Six, J
Herrick, JE
AF Six, Johan
Herrick, Jeffrey E.
BE Wall, DH
TI Soil Ecology and Ecosystem Services Introduction
SO SOIL ECOLOGY AND ECOSYSTEM SERVICES
LA English
DT Editorial Material; Book Chapter
C1 [Six, Johan] Univ Calif Davis, Davis, CA 95616 USA.
[Herrick, Jeffrey E.] ARS, USDA, Jornada Expt Range, Nmsu Las Cruces, NM USA.
RP Six, J (reprint author), Univ Calif Davis, One Shields Ave, Davis, CA 95616 USA.
NR 4
TC 0
Z9 0
U1 0
U2 0
PU OXFORD UNIV PRESS
PI NEW YORK
PA 198 MADISON AVENUE, NEW YORK, NY 10016 USA
BN 978-0-19-968816-6; 978-0-19-177484-3; 978-0-19-957592-3
PY 2013
BP 299
EP 300
PG 2
WC Soil Science
SC Agriculture
GA BC6SB
UT WOS:000354454500026
ER
PT B
AU Karlen, DL
AF Karlen, Douglas L.
BE Wall, DH
TI Soil Health: The Concept, Its Role, and Strategies for Monitoring
SO SOIL ECOLOGY AND ECOSYSTEM SERVICES
LA English
DT Article; Book Chapter
ID MANAGEMENT ASSESSMENT FRAMEWORK; QUALITY
C1 ARS, USDA, Ames, IA 50011 USA.
RP Karlen, DL (reprint author), ARS, USDA, 2110 Univ Blvd, Ames, IA 50011 USA.
NR 26
TC 1
Z9 1
U1 1
U2 3
PU OXFORD UNIV PRESS
PI NEW YORK
PA 198 MADISON AVENUE, NEW YORK, NY 10016 USA
BN 978-0-19-968816-6; 978-0-19-177484-3; 978-0-19-957592-3
PY 2013
BP 331
EP 336
PG 6
WC Soil Science
SC Agriculture
GA BC6SB
UT WOS:000354454500029
ER
PT B
AU Cavigelli, MA
Maul, JE
Szlavecz, K
AF Cavigelli, Michel A.
Maul, Jude E.
Szlavecz, Katalin
BE Wall, DH
TI Managing Soil Biodiversity and Ecosystem Services
SO SOIL ECOLOGY AND ECOSYSTEM SERVICES
LA English
DT Article; Book Chapter
ID ARBUSCULAR MYCORRHIZAL FUNGI; GREENHOUSE-GAS CONTRIBUTIONS; CONVENTIONAL
FIELD CROPS; ORGANIC-MATTER CONTENT; MID-ATLANTIC REGION; CROPPING
SYSTEMS; LONG-TERM; AGRICULTURAL SUSTAINABILITY; MICROBIAL COMMUNITIES;
TILLAGE SYSTEMS
C1 [Cavigelli, Michel A.; Maul, Jude E.] ARS, USDA, Sustainable Agr Syst Lab, Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
[Szlavecz, Katalin] Johns Hopkins Univ, Dept Earth & Planetary Sci, Baltimore, MD 21218 USA.
RP Cavigelli, MA (reprint author), ARS, USDA, Sustainable Agr Syst Lab, Beltsville Agr Res Ctr, 10300 Baltimore Ave, Beltsville, MD 20705 USA.
NR 145
TC 2
Z9 2
U1 1
U2 3
PU OXFORD UNIV PRESS
PI NEW YORK
PA 198 MADISON AVENUE, NEW YORK, NY 10016 USA
BN 978-0-19-968816-6; 978-0-19-177484-3; 978-0-19-957592-3
PY 2013
BP 337
EP 356
PG 20
WC Soil Science
SC Agriculture
GA BC6SB
UT WOS:000354454500030
ER
PT B
AU Herrick, JE
Six, J
AF Herrick, Jeffrey E.
Six, Johan
BE Wall, DH
TI Synthesis
SO SOIL ECOLOGY AND ECOSYSTEM SERVICES
LA English
DT Article; Book Chapter
C1 [Herrick, Jeffrey E.] ARS, USDA, Jornada Expt Range, Nmsu Las Cruces, NM 88003 USA.
[Six, Johan] Univ Calif Davis, Davis, CA 95616 USA.
RP Herrick, JE (reprint author), ARS, USDA, Jornada Expt Range, POB 30003,MSC 3JER, Nmsu Las Cruces, NM 88003 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU OXFORD UNIV PRESS
PI NEW YORK
PA 198 MADISON AVENUE, NEW YORK, NY 10016 USA
BN 978-0-19-968816-6; 978-0-19-177484-3; 978-0-19-957592-3
PY 2013
BP 395
EP 396
PG 2
WC Soil Science
SC Agriculture
GA BC6SB
UT WOS:000354454500033
ER
PT J
AU Sutivisedsak, N
Leathers, TD
Price, NPJ
AF Sutivisedsak, Nongnuch
Leathers, Timothy D.
Price, Neil P. J.
TI Production of schizophyllan from distiller's dried grains with solubles
by diverse strains of Schizophyllum commune
SO SPRINGERPLUS
LA English
DT Article
DE Distiller's dried grains with solubles; DDGS; Schizophyllum commune;
Schizophyllan
AB Eleven diverse strains of Schizophyllan commune were examined for production of the biopolymer schizophyllan from agricultural biomass. Strains were grown in malt extract (ME) basal medium containing 1% (w/v) distiller's dried grains with solubles (DDGS), an abundant coproduct of fuel ethanol production by the dry grind process. Ten of 11 strains tested produced more than 2 g schizophyllan/L. Two strains, ATCC 20165 and CBS 266.60, produced more than 10 g schizophyllan/L. Schizophyllan from these strains was similar to commercial product in terms of solution viscosity, molecular weight, and surface tension properties, suggesting that they would be equivalent in biomaterial applications.
C1 [Sutivisedsak, Nongnuch; Leathers, Timothy D.; Price, Neil P. J.] ARS, Renewable Prod Technol Res Unit, Natl Ctr Agr Utilizat Res, USDA, Peoria, IL 61604 USA.
RP Leathers, TD (reprint author), ARS, Renewable Prod Technol Res Unit, Natl Ctr Agr Utilizat Res, USDA, 1815 N Univ St, Peoria, IL 61604 USA.
EM Tim.Leathers@ars.usda.gov
FU Agriculture and Food Research Initiative Competitive Grant from the USDA
National Institute of Food and Agriculture [2010-65504-20377]
FX Expert technical assistance was provided by Erika Hertenstein, Melinda
S. Nunnally, Suzanne Unser, and Andrew J. Thomas. The authors sincerely
thank Christopher Dunlap for surface tension measurements. This project
was supported by Agriculture and Food Research Initiative Competitive
Grant no. 2010-65504-20377 from the USDA National Institute of Food and
Agriculture. Mention of any trade names or commercial products in this
publication is solely for the purpose of providing specific information
and does not imply recommendation or endorsement by the US Department of
Agriculture. USDA is an equal opportunity provider and employer.
NR 17
TC 0
Z9 1
U1 0
U2 3
PU SPRINGER INTERNATIONAL PUBLISHING AG
PI CHAM
PA GEWERBESTRASSE 11, CHAM, CH-6330, SWITZERLAND
SN 2193-1801
J9 SPRINGERPLUS
JI SpringerPlus
PY 2013
VL 2
AR 476
DI 10.1186/2193-1801-2-476
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA V40FS
UT WOS:000209465100048
PM 24102042
ER
PT S
AU Bushman, BS
Warnke, SE
AF Bushman, B. Shaun
Warnke, Scott E.
BE Stier, JC
Horgan, BP
Bonos, SA
TI Genetic and Genomic Approaches for Improving Turfgrass
SO TURFGRASS: BIOLOGY, USE, AND MANAGEMENT
SE Agronomy Monograph
LA English
DT Article; Book Chapter
ID RYEGRASS LOLIUM-PERENNE; FESCUE FESTUCA-ARUNDINACEA; TRANSGENIC TALL
FESCUE; POA-PRATENSIS L.; AGROBACTERIUM-MEDIATED TRANSFORMATION; EST-SSR
MARKERS; HIGH-EFFICIENCY TRANSFORMATION; HIGHLY REGENERATIVE TISSUES;
TOLERANT ZOYSIA-JAPONICA; AGROSTIS-STOLONIFERA L.
C1 [Bushman, B. Shaun] USDA ARS, Forage & Range Res Lab, 695 N 1100 E, Logan, UT 84322 USA.
[Warnke, Scott E.] USDA ARS, Floral & Nursery Plants Res Unit, Beltsville, MD 20705 USA.
RP Bushman, BS (reprint author), USDA ARS, Forage & Range Res Lab, 695 N 1100 E, Logan, UT 84322 USA.
EM Shaun.Bushman@ars.usda.gov; Scott.Warnke@ars.usda.gov
NR 205
TC 0
Z9 0
U1 2
U2 3
PU AMER SOC AGRONOMY
PI MADISON
PA 677 SOUTH SEGOE RD, MADISON, WI 53711 USA
SN 2156-3276
BN 978-0-89118-614-4; 978-0-89118-613-7
J9 AGRON MONOGR
PY 2013
VL 56
BP 683
EP 711
DI 10.2134/agronmonogr56.c19
D2 10.2134/agronmonogr56
PG 29
WC Agronomy
SC Agriculture
GA BE3IU
UT WOS:000370793800021
ER
PT B
AU Blackwell, BF
Fernandez-Juricic, E
AF Blackwell, Bradley F.
Fernandez-Juricic, Esteban
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Behavior and Physiology in the Development and Application of Visual
Deterrents at Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID WHITE-TAILED DEER; INNATE PREDATOR-RECOGNITION; CORAL-SNAKE PATTERN;
COLOR PATTERNS; AMBIENT LIGHT; BIRD STRIKES; AVIAN VISION; SEA-SNAKES;
AIRCRAFT; PREY
C1 [Blackwell, Bradley F.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
[Fernandez-Juricic, Esteban] Purdue Univ, W Lafayette, IN 47907 USA.
RP Blackwell, BF (reprint author), Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
NR 95
TC 6
Z9 6
U1 0
U2 3
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 11
EP 22
PG 12
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800003
ER
PT B
AU Clark, L
Avery, ML
AF Clark, Larry
Avery, Michael L.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Effectiveness of Chemical Repellents in Managing Birds at Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID RED-WINGED BLACKBIRDS; EUROPEAN STARLINGS; PREDATOR URINES; AVOIDANCE;
RESPONSES; BEHAVIOR
C1 [Clark, Larry; Avery, Michael L.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
RP Clark, L (reprint author), Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
NR 53
TC 2
Z9 2
U1 0
U2 2
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 25
EP 35
PG 11
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800004
ER
PT B
AU Seamans, TW
Martin, JA
Belant, JL
AF Seamans, Thomas W.
Martin, James A.
Belant, Jerrold L.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Tactile and Auditory Repellents to Reduce Wildlife Hazards to Aircraft
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID WHITE-TAILED DEER; PREDATION RISK; ODOCOILEUS-VIRGINIANUS; CONVEY
INFORMATION; HIGHWAY STRUCTURES; FORAGING SITES; CANADA GEESE; ALARM
CALLS; BLACK BEARS; STARLINGS
C1 [Seamans, Thomas W.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
[Martin, James A.; Belant, Jerrold L.] Mississippi State Univ, Mississippi State, MS USA.
RP Seamans, TW (reprint author), Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
NR 109
TC 1
Z9 1
U1 0
U2 2
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 37
EP 46
PG 10
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800005
ER
PT B
AU VerCauteren, KC
Lavelle, M
Seamans, TW
AF VerCauteren, Kurt C.
Lavelle, Michael
Seamans, Thomas W.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Excluding Mammals from Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID WHITE-TAILED DEER; ELECTRIC FENCES; INTERSTATE HIGHWAY; VEHICLE
COLLISIONS; DAMAGE; MANAGEMENT; DESIGNS; EFFICACY; BARRIER; GUARDS
C1 [VerCauteren, Kurt C.; Lavelle, Michael; Seamans, Thomas W.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
RP VerCauteren, KC (reprint author), Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
NR 75
TC 2
Z9 2
U1 0
U2 1
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 49
EP 59
PG 11
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800006
ER
PT B
AU Curtis, PD
Cepek, JD
Mihalco, R
Seamans, TW
Craven, SR
AF Curtis, Paul D.
Cepek, Jonathon D.
Mihalco, Rebecca
Seamans, Thomas W.
Craven, Scott R.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Wildlife Translocation as a Management Alternative at Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID SITE FIDELITY; CANADA GEESE; BALD EAGLES; POPULATION; CONSERVATION;
CALIFORNIA; MOVEMENTS; CONFLICTS; SURVIVAL; HAWKS
C1 [Curtis, Paul D.] Cornell Univ, Ithaca, NY 14853 USA.
[Cepek, Jonathon D.; Mihalco, Rebecca] Wildlife Serv, USDA, Washington, DC USA.
[Seamans, Thomas W.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC USA.
[Craven, Scott R.] Univ Wisconsin, Madison, WI 53706 USA.
RP Curtis, PD (reprint author), Cornell Univ, Ithaca, NY 14853 USA.
NR 42
TC 0
Z9 0
U1 1
U2 2
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 61
EP 65
PG 5
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800007
ER
PT B
AU Dolbeer, RA
Franklin, AB
AF Dolbeer, Richard A.
Franklin, Alan B.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Population Management to Reduce the Risk of Wildlife-Aircraft Collisions
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID LOCAL-POPULATIONS; LETHAL CONTROL; SINKS; SELECTION; DYNAMICS; STRIKES;
BIRDS; MODEL
C1 [Dolbeer, Richard A.] Wildlife Serv, USDA, Washington, DC 20240 USA.
[Franklin, Alan B.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC USA.
RP Dolbeer, RA (reprint author), Wildlife Serv, USDA, Washington, DC 20240 USA.
NR 48
TC 1
Z9 1
U1 1
U2 3
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 67
EP 75
PG 9
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800008
ER
PT B
AU DeVault, TL
Washburn, BE
AF DeVault, Travis L.
Washburn, Brian E.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Identification and Management of Wildlife Food Resources at Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID MINIATURE VIDEO CAMERAS; CAPTIVE CANADA GEESE; TURKEY VULTURES;
INTERNATIONAL-AIRPORT; FORAGING PREFERENCES; AIRCRAFT COLLISIONS;
LAUGHING GULLS; HOME RANGES; NEW-YORK; BLACK
C1 [DeVault, Travis L.; Washburn, Brian E.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
RP DeVault, TL (reprint author), Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
NR 79
TC 4
Z9 4
U1 1
U2 3
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 79
EP 90
PG 12
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800009
ER
PT B
AU Blackwell, BF
Felstul, D
Seamans, TW
AF Blackwell, Bradley F.
Felstul, David
Seamans, Thomas W.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Managing Airport Stormwater to Reduce Attraction to Wildlife
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID MANAGEMENT; WETLAND; PONDS; COMMUNITIES; PERFORMANCE; AVIATION; IMPACTS;
SYSTEMS; LEVEL
C1 [Blackwell, Bradley F.; Seamans, Thomas W.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
[Felstul, David] US Dept Interior, Washington, DC USA.
RP Blackwell, BF (reprint author), Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
NR 57
TC 1
Z9 1
U1 0
U2 1
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 93
EP 102
PG 10
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800010
ER
PT B
AU Washburn, BE
Seamans, TW
AF Washburn, Brian E.
Seamans, Thomas W.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Managing Turfgrass to Reduce Wildlife Hazards at Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID KENNEDY-INTERNATIONAL-AIRPORT; VEGETATION-HEIGHT MANAGEMENT; STARLINGS
STURNUS-VULGARIS; CAPTIVE CANADA GEESE; GREATER SNOW GEESE; NEW-YORK;
FORAGING PREFERENCES; PREDATOR DETECTION; NORTHERN BOBWHITE; SEASON
GRASSES
C1 [Washburn, Brian E.; Seamans, Thomas W.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
RP Washburn, BE (reprint author), Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
NR 89
TC 3
Z9 3
U1 0
U2 3
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 105
EP 114
PG 10
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800011
ER
PT B
AU Martin, JA
Conkling, TJ
Belant, JL
Biondi, KM
Blackwell, BF
DeVault, TL
Fernandez-Juricic, E
Schmidt, PM
Seamans, TW
AF Martin, James A.
Conkling, Tara J.
Belant, Jerrold L.
Biondi, Kristin M.
Blackwell, Bradley F.
DeVault, Travis L.
Fernandez-Juricic, Esteban
Schmidt, Paige M.
Seamans, Thomas W.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Wildlife Conservation and Alternative Land Uses at Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID AMERICAN GRASSLAND BIRDS; HABITAT FRAGMENTATION; AREA SENSITIVITY;
HARVESTING SWITCHGRASS; BIOMASS PRODUCTION; RESERVE PROGRAM; AVIAN
RESPONSE; UNITED-STATES; LANDSCAPE; MISCANTHUS
C1 [Martin, James A.; Conkling, Tara J.; Belant, Jerrold L.; Biondi, Kristin M.] Mississippi State Univ, Mississippi State, MS 39762 USA.
[Blackwell, Bradley F.; DeVault, Travis L.; Seamans, Thomas W.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC USA.
[Fernandez-Juricic, Esteban] Purdue Univ, W Lafayette, IN 47907 USA.
[Schmidt, Paige M.] US Fish & Wildlife Serv, Washington, DC USA.
RP Martin, JA (reprint author), Mississippi State Univ, Mississippi State, MS 39762 USA.
NR 84
TC 1
Z9 1
U1 1
U2 2
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 117
EP 125
PG 9
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800012
ER
PT B
AU Belant, JL
Washburn, BE
DeVault, TL
AF Belant, Jerrold L.
Washburn, Brian E.
DeVault, Travis L.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Understanding Animal Movements at and near Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID KENNEDY-INTERNATIONAL-AIRPORT; HOME-RANGE; NEW-YORK; LAUGHING GULLS;
BIRD STRIKES; BODY-SIZE; ENERGETIC CONSTRAINTS; CANADA GEESE; MAMMALS;
AIRCRAFT
C1 [Belant, Jerrold L.] Mississippi State Univ, Mississippi State, MS 39762 USA.
[Washburn, Brian E.; DeVault, Travis L.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC USA.
RP Belant, JL (reprint author), Mississippi State Univ, Mississippi State, MS 39762 USA.
NR 82
TC 0
Z9 0
U1 1
U2 1
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 129
EP 138
PG 10
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800013
ER
PT B
AU Blackwell, BF
Schmidt, PM
Martin, JA
AF Blackwell, Bradley F.
Schmidt, Paige M.
Martin, James A.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Avian Survey Methods for Use at Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
ID PRESENCE-ABSENCE DATA; DETECTION PROBABILITIES; INTERNATIONAL-AIRPORT;
POINT COUNTS; WILDLIFE; POPULATION; ABUNDANCE; AIRCRAFT; BIRDS;
MANAGEMENT
C1 [Blackwell, Bradley F.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
[Schmidt, Paige M.] US Fish & Wildlife Serv, Washington, DC USA.
[Martin, James A.] Mississippi State Univ, Mississippi State, MS USA.
RP Blackwell, BF (reprint author), Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC 20240 USA.
NR 59
TC 2
Z9 2
U1 0
U2 2
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 153
EP 165
PG 13
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800015
ER
PT B
AU Belant, JL
DeVault, TL
Blackwell, BF
AF Belant, Jerrold L.
DeVault, Travis L.
Blackwell, Bradley F.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Conclusions and Future Directions
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Editorial Material; Book Chapter
ID FLIGHT BEHAVIOR; AIRCRAFT; MANAGEMENT; AIRPORT; RISK; COLLISIONS;
AVIATION; STRIKES; SAFETY
C1 [Belant, Jerrold L.] Mississippi State Univ, Mississippi State, MS 39762 USA.
[DeVault, Travis L.; Blackwell, Bradley F.] Wildlife Serv, USDA, Natl Wildlife Res Ctr, Washington, DC USA.
RP Belant, JL (reprint author), Mississippi State Univ, Mississippi State, MS 39762 USA.
NR 25
TC 0
Z9 0
U1 0
U2 0
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 167
EP 170
PG 4
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800016
ER
PT B
AU Dolbeer, RA
AF Dolbeer, Richard A.
BE DeVault, TL
Blackwell, BF
Belant, JL
TI Regulations for Wildlife Management at Airports
SO WILDLIFE IN AIRPORT ENVIRONMENTS: PREVENTING ANIMAL-AIRCRAFT COLLISIONS
THROUGH SCIENCE-BASED MANAGEMENT
SE Wildlife Management and Conservation
LA English
DT Article; Book Chapter
C1 Wildlife Serv, USDA, Washington, DC 20240 USA.
RP Dolbeer, RA (reprint author), Wildlife Serv, USDA, Washington, DC 20240 USA.
NR 6
TC 0
Z9 0
U1 0
U2 0
PU JOHNS HOPKINS UNIV PRESS
PI BALTIMORE
PA 2715 N CHARLES ST, BALTIMORE, MD 21218-4319 USA
BN 978-1-4214-1083-8; 978-1-4214-1082-1
J9 WILDL MANAGE CONSERV
PY 2013
BP 173
EP 174
PG 2
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA BB8KG
UT WOS:000346766800017
ER
PT J
AU Chaiyadee, S
Jogloy, S
Songsri, P
Singkham, N
Vorasoot, N
Sawatsitang, P
Holbrook, CC
Patanothai, A
AF Chaiyadee, S.
Jogloy, S.
Songsri, P.
Singkham, N.
Vorasoot, N.
Sawatsitang, P.
Holbrook, C. C.
Patanothai, A.
TI Soil moisture affects fatty acids and oil quality parameters in peanut
SO INTERNATIONAL JOURNAL OF PLANT PRODUCTION
LA English
DT Article
DE Arachis hypogaea L.; Drought stress; O/L ratio; Iodine value
ID ARACHIS-HYPOGAEA L; HIGH OLEIC-ACID; AFLATOXIN CONTAMINATION; OXIDATIVE
STABILITY; SEED COMPOSITION; N-2 FIXATION; DROUGHT; GENOTYPES;
ASSOCIATION; TEMPERATURE
AB Drought affects yield of peanut, but its effect on oleic and linoleic acids that influence its oil quality of peanut genotypes with different levels of drought resistance has not been clearly investigated. Therefore, the aims of this research were to determine whether soil water levels could affect oil quality by changes in fatty acid compositions of peanut, and to investigate the changes in oil characters in peanut genotypes with their potential drought resistance under different water regimes. Field experiments were conducted in split-plot designs with four replications during dry season for two years (2003/04 and 2004/05). Three water regimes [field capacity (PC), 2/3 available soil water (2/3 AW) and 1/3 available soil water (1/3 AW)] were assigned as main-plots, and six peanut genotypes were assigned as sub-plots. The data were recorded at maturity for fatty acid compositions and % oil. Seed samples were analyzed for % oil by Soxtec System HT, and fatty acid compositions were analyzed by gas liquid chromatography. Differences among water regimes and peanut genotypes were significant for oleic and linoleic acids content and their ratio (OIL ratio), unsaturated to saturated fatty acid ratio (U/S ratio) and iodine value (IV). Genotype x water regime interactions were also significant for all characters. Drought improved the oil quality by significant increase in oleic acid and OIL ratio, and reduced the linoleic acid, IV and U/S ratio. Peanut genotypes with different levels of drought resistance displayed similar tendency in fatty acid characters under drought conditions.
C1 [Chaiyadee, S.; Jogloy, S.; Songsri, P.; Singkham, N.; Vorasoot, N.; Patanothai, A.] Khon Kaen Univ, Dept Plant Sci & Agr Resources, Fac Agr, Khon Kaen 40002, Thailand.
[Sawatsitang, P.] Khon Kaen Univ, Dept Biochem, Fac Sci, Khon Kaen 40002, Thailand.
[Holbrook, C. C.] ARS, Crop Genet & Breeding Res Unit, USDA, Coastal Plain Expt Stn, Tifton, GA 31793 USA.
RP Jogloy, S (reprint author), Khon Kaen Univ, Dept Plant Sci & Agr Resources, Fac Agr, Khon Kaen 40002, Thailand.
EM sanun@kku.ac.th
FU Peanut and Jerusalem Atrichoke Improvement For Functional Food Research
Group, and Plant Breeding Research Centure; Khon Kaen University;
Faculty of Agriculture
FX This work was supported by the Peanut and Jerusalem Atrichoke
Improvement For Functional Food Research Group, and Plant Breeding
Research Centure. Khon Kaen University, Khon Kaen, Thailand. Thanks are
extended to Department of Biochemistry, Faculty of Science, Khon Kaen
University, Khon Kaen, Thailand for providing laboratory facilities.
Acknowledgement is extended to Khon Kaen University and the Faculty of
Agriculture for providing financial support for manuscript preparation
activities.
NR 30
TC 3
Z9 5
U1 1
U2 10
PU GORGAN UNIV AGRICULTURAL SCIENCES & NATURAL RESOURCES
PI GORGAN
PA GORGAN UNIV AGRICULTURAL SCIENCES & NATURAL RESOURCES, JOURNAL OFFICE,
VICE-PRESIDENCY RESEARCH, GORGAN, 49138-15739, IRAN
SN 1735-6814
J9 INT J PLANT PROD
JI Int. J. Plant Prod.
PD JAN
PY 2013
VL 7
IS 1
BP 81
EP 95
PG 15
WC Agronomy
SC Agriculture
GA 043YJ
UT WOS:000311586300006
ER
PT J
AU Britton, KO
Liebhold, AM
AF Britton, Kerry O.
Liebhold, Andrew M.
TI One world, many pathogens!
SO NEW PHYTOLOGIST
LA English
DT Editorial Material
DE biogeography; establishment; Europe; forest; invasive; pathways; spread;
trade
ID PLANT; INVASIONS; EUROPE; INSECT; US
C1 [Britton, Kerry O.] US Forest Serv, USDA, Arlington, VA 22209 USA.
[Liebhold, Andrew M.] US Forest Serv, USDA, No Res Stn, Morgantown, WV 26505 USA.
RP Britton, KO (reprint author), US Forest Serv, USDA, Arlington, VA 22209 USA.
EM kbritton01@fs.fed.us
RI Liebhold, Andrew/C-1423-2008
OI Liebhold, Andrew/0000-0001-7427-6534
NR 10
TC 6
Z9 7
U1 2
U2 30
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0028-646X
EI 1469-8137
J9 NEW PHYTOL
JI New Phytol.
PD JAN
PY 2013
VL 197
IS 1
BP 9
EP 10
DI 10.1111/nph.12053
PG 2
WC Plant Sciences
SC Plant Sciences
GA 044GG
UT WOS:000311606800004
PM 23181679
ER
PT J
AU Dougherty, M
Burger, JA
Feldhake, CM
AbdelGadir, AH
AF Dougherty, Mark
Burger, James A.
Feldhake, Charles M.
AbdelGadir, A. H.
TI Calibration and use of plate meter regressions for pasture mass
estimation in an Appalachian silvopasture
SO ARCHIVES OF AGRONOMY AND SOIL SCIENCE
LA English
DT Article
DE forage; pasture mass; plate height; ruler height; tall fescue;
orchardgrass
ID HERBAGE YIELD; DISK METER; HEIGHT; TRIALS
AB A plate meter for measuring pasture mass was calibrated at Agroforestry Research Site in Blacksburg, Virginia, USA, using six ungrazed plots of established tall fescue overseeded with orchardgrass. Each plot was interplanted with bare root honey locust and black walnut seedlings spaced along a gradient ranging from 1.8 to 11.0 m. Plate height (PH) of forage between trees was measured by placing a 46-mm x 46-mm x 5.6-mm-thick acrylic plastic plate meter on pasture canopy at six locations four times a season. PH was measured between ground and plate as it rested on pasture canopy. To calibrate the plate meter against a known dry matter yield, 50 x 50-cm clip plots followed each PH measurement. The resulting regression slope was 421 kg ha(-1) cm(-1), with an r(2) value of 0.86. Unique research investigating the response of forage mass to site elevation is presented using the developed equation. The field-calibrated regression slope of ruler height (RH) to PH was 1.71 cm cm(-1), with an r(2) value of 0.87, showing good correlation between RH and PH. A comparable regional regression equation was found to adequately predict independent calibration clip plot data reported at this site. The results support the application of regression equations for estimating pasture mass in areas having similar climates and pasture composition.
C1 [Dougherty, Mark; AbdelGadir, A. H.] Auburn Univ, Biosyst Engn Dept, Auburn, AL 36849 USA.
[Burger, James A.] Virginia Tech, Dept Forestry, Blacksburg, VA USA.
[Feldhake, Charles M.] ARS, USDA, Appalachian Farming Syst Res Ctr, Beaver, WV USA.
RP AbdelGadir, AH (reprint author), Auburn Univ, Biosyst Engn Dept, Auburn, AL 36849 USA.
EM aha0001@auburn.edu
FU USDA-ARS Lab in Beckley, WV
FX The authors wish to thank the following institutions and persons for
their help in making this study possible. First, the USDA-ARS Lab in
Beckley, WV provided much of the leadership and funding for the
agroforestry research and demonstration site. Virginia Tech's Department
of Forestry has joined in the commitment to long-term agroforestry
research, as has the staff at the Kentland Agricultural Research Farm.
Ed Rayburn of West Virginia University offered much of his time during
the preliminary stages of this study, as did Virginia Tech faculty Paul
Peterson and Ozzie Abaye. Forestry Department technical and research
staff Dave Mitchem, Eric Bendfeldt, Andy Scott, Brian Long, and Dia
Anderson proved invaluable in making the work go smoothly.
NR 23
TC 1
Z9 3
U1 3
U2 12
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0365-0340
J9 ARCH AGRON SOIL SCI
JI Arch. Agron. Soil Sci.
PY 2013
VL 59
IS 2
BP 305
EP 315
DI 10.1080/03650340.2011.615026
PG 11
WC Agronomy; Soil Science
SC Agriculture
GA 039UE
UT WOS:000311271200012
ER
PT J
AU Porter, SD
Calcaterra, LA
AF Porter, Sanford D.
Calcaterra, Luis A.
TI Dispersal and competitive impacts of a third fire ant decapitating fly
(Pseudacteon obtusus) established in North Central Florida
SO BIOLOGICAL CONTROL
LA English
DT Article
DE Competitive exclusion; Competitive displacement; Coexistence; Biological
control; Solenopsis invicta; Phoridae; Parasitoid
ID SOLENOPSIS-INVICTA HYMENOPTERA; FLIES DIPTERA; CURVATUS DIPTERA;
BIOLOGICAL-CONTROL; HOST-SPECIFICITY; SOUTH-AMERICA; INTERCONTINENTAL
DIFFERENCES; TRICUSPIS DIPTERA; NATURAL ENEMIES; PHORIDAE
AB Self-sustaining classical biological control agents offer hope for permanent wide-area control of imported Solenopsis fire ants in the United States because escape from abundant natural enemies left behind in Argentina is a likely reason for unusually high fire ant densities in the United States. The fire ant decapitating fly Pseudacteon obtusus Borgmeier (Diptera: Phoridae) was released as a biocontrol agent of the red imported fire ant (Solenopsis invicta Buren) in Gainesville, FL because it is a common parasitoid of this ant in Argentina and because it has a higher propensity of attacking fire ants along foraging trails than the two Pseudacteon species previously released. Field surveys of a rapidly expanding P. obtusus population (8-12 km/yr) proved that this fly was capable of thriving and successfully competing with the much more abundant Pseudacteon curvatus Borgmeier. However, Pseudacteon tricuspis Borgmeier, the first decapitating fly released, was effectively excluded from most sample sites when faced with competition from both P. curvatus and the similar-sized P. obtusus. Despite clear evidence for competitive exclusion, P. tricuspis abundance at sample sites was positively correlated with the abundance of its two competitors-probably because of moderate to strong covariability in the suitability of sample sites for all three congeners. The addition of P. curvatus, the second parasitoid released, increased total parasitism pressure on fire ant populations by about 10-fold. The addition of P. obtusus, the third species, did not measurably improve total guild parasitism rates on imported fire ants in North Central Florida (as assessed by roadside trap counts), but the performance of this species will likely vary with habitat, region, and climate. Published by Elsevier Inc.
C1 [Porter, Sanford D.] USDA ARS, Ctr Med Agr & Vet Entomol, Gainesville, FL 32608 USA.
[Calcaterra, Luis A.] USDA ARS, S Amer Biol Control Lab, Buenos Aires, DF, Argentina.
RP Porter, SD (reprint author), USDA ARS, Ctr Med Agr & Vet Entomol, 1600 SW 23rd Dr, Gainesville, FL 32608 USA.
EM sanford.porter@ars.usda.gov; luiscalcaterra@hotmail.com
FU USDA-APHIS, PPQ
FX We would especially like to thank Juan Briano (USDA-ARS, SAB-CL,
Hurlingham, Argentina) for technical and logistical support of this
study and phorid fly research generally. Cynthia Vann and Darrell Hall
(USDA-ARS, CMAVE, Gainesville, FL) ably assisted with fly rearing,
host-specificity testing, and fire ant rearing. Darrell Hall also helped
with field monitoring efforts. Field release of the flies used in this
paper would not have been possible if Charlie Brown (USDA-APHIS, PPQ,
Riverdale, MD) had not personally shepherded a FONSI through regulatory
channels. Ed LeBrun (University of Texas, Austin), Colleen Porter
(Gainesville, FL), and Lloyd Morrison (Missouri State Univ.,
Springfield) read the manuscript and provided a number of helpful
comments; Lloyd also provided several important references. We also
thank those who assisted with reviewing the field release proposal for
P. obtusus at the state, federal, and international levels as well as
the anonymous reviewers of this paper. Funding provided by USDA-APHIS,
PPQ assisted substantially with rearing the Pseudacteon flies mentioned
in this paper.
NR 63
TC 9
Z9 9
U1 2
U2 41
PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 1049-9644
J9 BIOL CONTROL
JI Biol. Control
PD JAN
PY 2013
VL 64
IS 1
BP 66
EP 74
DI 10.1016/j.biocontrol.2012.09.018
PG 9
WC Biotechnology & Applied Microbiology; Entomology
SC Biotechnology & Applied Microbiology; Entomology
GA 042YM
UT WOS:000311508700009
ER
PT J
AU Shanley, CS
Pyare, S
Smith, WP
AF Shanley, Colin S.
Pyare, Sanjay
Smith, Winston P.
TI Response of an ecological indicator to landscape composition and
structure: Implications for functional units of temperate rainforest
ecosystems
SO ECOLOGICAL INDICATORS
LA English
DT Article
DE Landscape thresholds; Northern flying squirrel; Old-growth forest; Patch
occupancy; Resource selection function
ID NORTHERN FLYING SQUIRRELS; RESOURCE SELECTION FUNCTIONS; OLD-GROWTH
FORESTS; GLAUCOMYS-SABRINUS; SOUTHEASTERN-ALASKA; HABITAT FRAGMENTATION;
PTEROMYS-VOLANS; BIODIVERSITY; MANAGEMENT; CONSERVATION
AB We evaluated the northern flying squirrel (Glaucomys sabrinus griseifrons), a known associate of key habitat features and processes of old-growth forest, for its capacity as a broad-scale ecological indicator of temperate rainforest ecosystem condition in southeastern Alaska, USA. We utilized a spatially explicit, resource-selection function to evaluate its distribution relative to landscape composition and structure at local (within home-range) and broad (home-range selection) spatial scales, followed by a moving-window analysis to model patch occupancy across this landscape. We found strong support for the influence of type, size, and compositional elements: large, old-growth patches were selected at both spatial scales, and regenerating forest patches <= 40 yrs old were selected against at the broader scale. More importantly, we found that occupancy was related to critical thresholds in composition: patches required >= 73% old-growth forest cover or a minimum total area of 73 ha of old-growth forest to be occupied by flying squirrels. A non-uniform pattern of selection for patches with higher structural connectivity at the local scale, but not at the broader scale, was likely a result of the "empty forest" phenomenon, in which remnant patches were inaccessible in this fragmented landscape. These results are consistent with recent studies of this and related species and suggest that occurrence of northern flying squirrels in southeastern Alaska is influenced by a number of landscape structure and compositional variables that relate critically to late-seral forest conditions. These findings shed new light on the utility of this species as an ecological indicator and its functional relevance to the resilience of fragmented forest ecosystems. (C) 2012 Elsevier Ltd. All rights reserved.
C1 [Shanley, Colin S.; Pyare, Sanjay] Univ Alaska SE, Spatial Ecosyst Anal Lab, Juneau, AK 99801 USA.
[Smith, Winston P.] US Forest Serv, USDA, Pacific NW Res Stn, Forestry Sci Lab, Olympia, WA 98512 USA.
RP Shanley, CS (reprint author), Nature Conservancy, Alaska Field Off, 416 Harris St,Suite 301, Juneau, AK 99801 USA.
EM cshanley@tnc.org; sanjay.pyare@uas.alaska.edu; winstonpsmith@fs.fed.us
FU U.S. Fish and Wildlife Service; University of Alaska Southeast; U.S.
Forest Service Pacific Northwest Research Station; Earthwatch
Foundation; Thorne Bay Ranger District
FX We thank the U.S. Fish and Wildlife Service, University of Alaska
Southeast, U.S. Forest Service Pacific Northwest Research Station,
Earthwatch Foundation, and the Thorne Bay Ranger District for providing
funding and support to the project. We appreciate field work by I.
Abernathy, R. Choi, E. Flaherty, D. Haynes, A. Jacob, M. Knaggs, and G.
Yenni.
NR 59
TC 4
Z9 4
U1 5
U2 58
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1470-160X
EI 1872-7034
J9 ECOL INDIC
JI Ecol. Indic.
PD JAN
PY 2013
VL 24
BP 68
EP 74
DI 10.1016/j.ecolind.2012.05.027
PG 7
WC Biodiversity Conservation; Environmental Sciences
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA 036VH
UT WOS:000311059900008
ER
PT J
AU Wang, K
Huang, HG
Zhu, ZQ
Li, TQ
He, ZL
Yang, XE
Alva, A
AF Wang, Kai
Huang, Huagang
Zhu, Zhiqiang
Li, Tingqiang
He, Zhenli
Yang, Xiaoe
Alva, Ashok
TI PHYTOEXTRACTION OF METALS AND RHIZOREMEDIATION OF PAHS IN
CO-CONTAMINATED SOIL BY CO-PLANTING OF SEDUM ALFREDII WITH RYEGRASS
(LOLIUM PERENNE) OR CASTOR (RICINUS COMMUNIS)
SO INTERNATIONAL JOURNAL OF PHYTOREMEDIATION
LA English
DT Article
DE co-contamination; phytoremediation; hyperaccumulator; heavy metal;
polycyclic aromatic hydrocarbons; co-planting
ID POLYCYCLIC AROMATIC-HYDROCARBONS; THLASPI-CAERULESCENS; HEAVY-METALS;
PHYTOREMEDIATION; CADMIUM; CD; PHENANTHRENE; DISSIPATION; DEGRADATION;
RHIZOSPHERE
AB A pot experiment was conducted to investigate the potential for phytoextraction of heavy metals and rhizoremediation of polycyclic aromatic hydrocarbons (PAHs) in co-contaminated soil by co-planting a cadmium/zinc (Cd/Zn) hyperaccumulator and lead (Pb) accumulator Sedum alfredii with ryegrass (Lolium perenne) or castor (Ricinus communis). Co-planting with castor decreased the shoot biomass of S. alfredii as compared to that in monoculture. Cadmium concentration in S. alfredii shoot significantly decreased when grown with ryegrass or castor as compared to that in monoculture. However, no reduction of Zn or Pb concentration in S. alfredii shoot was detected in co-planting treatments. Total removal of either Cd, Zn, or Pb by plants was similar across S. alfredii monoculture or co-planting with ryegrass or castor, except enhanced Pb removal in S. alfredii and ryegrass co-planting treatment. Co-planting of S. alfredii with ryegrass or castor significantly enhanced the pyrene and anthracene dissipation as compared to that in the bare soil or S. alfredii monoculture. This appears to be due to the increased soil microbial population and activities in both co-planting treatments. Co-planting of S. alfredii with ryegrass or castor provides a promising strategy to mitigate both metal and PAH contaminants from co-contaminated soils.
C1 [Wang, Kai; Huang, Huagang; Zhu, Zhiqiang; Li, Tingqiang; Yang, Xiaoe] Zhejiang Univ, Coll Environm & Resources Sci, MOE Key Lab Environm Remediat & Ecosyst Hlth, Hangzhou 310058, Zhejiang, Peoples R China.
[Zhu, Zhiqiang] Hainan Univ, Coll Agr, Haikou 570228, Peoples R China.
[He, Zhenli] Univ Florida, Inst Food & Agr Sci, Indian River Res & Educ Ctr, Ft Pierce, FL 34945 USA.
[Alva, Ashok] Agr Res Serv, USDA, Prosser, WA 99350 USA.
RP Yang, XE (reprint author), Zhejiang Univ, Coll Environm & Resources Sci, MOE Key Lab Environm Remediat & Ecosyst Hlth, Zijingang Campus, Hangzhou 310058, Zhejiang, Peoples R China.
EM litq@zju.edu.cn; xyang571@yahoo.com
RI He, Zhenli/R-1494-2016; Li, Tingqiang/B-2592-2017
OI He, Zhenli/0000-0001-7761-2070; Li, Tingqiang/0000-0003-4448-4871
FU "863" Target Goal Project from Ministry of Science of China
[2012AA101405-1]; Ministry of Education of China [310003]; Ministry of
Environmental Protection of China [2011467057]
FX This study was financially supported by a "863" Target Goal Project from
Ministry of Science of China (#2012AA101405-1), a key project from
Ministry of Education of China (#310003), and a project from Ministry of
Environmental Protection of China (#2011467057).
NR 45
TC 11
Z9 13
U1 4
U2 80
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1522-6514
J9 INT J PHYTOREMEDIAT
JI Int. J. Phytoremediat.
PY 2013
VL 15
IS 3
BP 283
EP 298
DI 10.1080/15226514.2012.694501
PG 16
WC Environmental Sciences
SC Environmental Sciences & Ecology
GA 030XT
UT WOS:000310604100008
PM 23488013
ER
PT J
AU Oliveira, PTS
Wendland, E
Nearing, MA
AF Sanches Oliveira, Paulo Tarso
Wendland, Edson
Nearing, Mark A.
TI Rainfall erosivity in Brazil: A review
SO CATENA
LA English
DT Review
DE Erosivity; Erosion; Water erosion; Annual precipitation; R factor; RUSLE
ID SOIL-EROSION MODEL; RETURN PERIOD; WATER EROSION; LOSS EQUATION; EI30
INDEX; STATE; PATTERNS; PRECIPITATION; RS; CLIMATE
AB In this paper, we review the erosivity studies conducted in Brazil to verify the quality and representativeness of the results generated and to provide a greater understanding of the rainfall erosivity (R factor) in Brazil. We searched the ISI Web of Science, Scopus, SciELO, and Google Scholar databases and in recent theses and dissertations to obtain the following information: latitude, longitude, city, states, length of record (years). altitude, precipitation. R factor, equations calculated and respective determination coefficient (R-2). We found 35 studies in Brazil that used pluviographic rainfall data to calculate the rainfall erosivity. These studies were concentrated in the cities of the south and southeast regions (similar to 60% of all the cities studied in Brazil) with a few studies in other regions, mainly in the north. The annual rainfall erosivity in Brazil ranged from 1672 to 22,452 MJ mm ha(-1) h(-1) yr(-1). The lowest values were found in the northeast region, and the highest values were found in the north region. The rainfall erosivity tends to increase from east to west, particularly in the northern part of the country. In Brazil, there are 73 regression equations to calculate erosivity. These equations can be useful to map rainfall erosivity for the entire country. To this end, techniques already established in Brazil may be used for the interpolation of rainfall erosivity, such as geostatistics and artificial neural networks. (C) 2012 Elsevier B.V. All rights reserved.
C1 [Sanches Oliveira, Paulo Tarso; Wendland, Edson] Univ Sao Paulo, Dept Hydraul & Sanit Engn, BR-13560970 Sao Carlos, SP, Brazil.
[Nearing, Mark A.] USDA ARS, SW Watershed Res Ctr, Tucson, AZ 85719 USA.
RP Oliveira, PTS (reprint author), Univ Sao Paulo, Dept Hydraul & Sanit Engn, CxP 359, BR-13560970 Sao Carlos, SP, Brazil.
EM paulot@sc.usp.br; ew@sc.usp.br; mark.nearing@ars.usda.gov
RI Oliveira, Paulo Tarso/A-4187-2011; Wendland, Edson/C-2362-2013
OI Oliveira, Paulo Tarso/0000-0003-2806-0083; Wendland,
Edson/0000-0003-3374-608X
FU Fundacao de Amparo Pesquisa do Estado de Sao Paulo - FAPESP
[2010/18788-5, 2011/14273-3]; Conselho Nacional de Desenvolvimento
Cientifico e Tecnologico - CNPq [Process 470846/2011-9]
FX The authors thank the Fundacao de Amparo Pesquisa do Estado de Sao Paulo
- FAPESP (Processes 2010/18788-5 and 2011/14273-3) and the Conselho
Nacional de Desenvolvimento Cientifico e Tecnologico - CNPq (Process
470846/2011-9) whose financial support made the development of the
present study feasible.
NR 86
TC 25
Z9 26
U1 2
U2 69
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0341-8162
J9 CATENA
JI Catena
PD JAN
PY 2013
VL 100
BP 139
EP 147
DI 10.1016/j.catena.2012.08.006
PG 9
WC Geosciences, Multidisciplinary; Soil Science; Water Resources
SC Geology; Agriculture; Water Resources
GA 023LY
UT WOS:000310037300014
ER
PT J
AU Evrendilek, GA
Altuntas, J
Sangun, MK
Zhang, HQ
AF Evrendilek, Gulsun Akdemir
Altuntas, Julide
Sangun, Mustafa Kemal
Zhang, Howard Q.
TI APRICOT NECTAR PROCESSING BY PULSED ELECTRIC FIELDS
SO INTERNATIONAL JOURNAL OF FOOD PROPERTIES
LA English
DT Article
DE Apricot nectar; Food quality; Foodborne pathogens; Food spoilage fungi;
Microbial inactivation; Pulsed electric fields
ID SOUR CHERRY JUICE; ESCHERICHIA-COLI; PRESSURE INACTIVATION; ORANGE
JUICE; APPLE JUICE; HEAT; MICROORGANISMS; PASTEURIZATION; PRODUCTS;
QUALITY
AB Application of pulsed electric fields to process apricot nectar by determining the pH,. Brix, total acidity, conductivity, color, non-enzymatic browning index, concentration of mineral ions, and retention of ascorbic acid and beta carotene as well as inactivation of Escherichia coli O157:H7, Listeria monocytogenes, Staphylococcus aureus, Pseudomonas syringae subs. syringae, Erwinia carotowora, Penicillum expansum, and Botrytis cinerea was explored in this study. Processing of apricot nectar did not cause a significant difference in measured attributes (p > 0.05). However, inactivation of all microorganisms was significantly increased with increased electric field strength and treatment time (p <= 0.05). Microbial inactivation data fit both the Weibull distribution and log-logistic model.
C1 [Evrendilek, Gulsun Akdemir] Abant Izzet Baysal Univ, Dept Food Engn, Fac Engn & Architecture, TR-14280 Bolu, Turkey.
[Evrendilek, Gulsun Akdemir; Altuntas, Julide] Mustafa Kemal Univ, Dept Food Engn, Fac Agr, Alahan, Hatay, Turkey.
[Sangun, Mustafa Kemal] Mustafa Kemal Univ, Dept Chem, Fac Sci & Arts, Alahan, Hatay, Turkey.
[Zhang, Howard Q.] USDA, Western Reg Res Ctr, Albany, CA 94710 USA.
RP Evrendilek, GA (reprint author), Abant Izzet Baysal Univ, Dept Food Engn, Fac Engn & Architecture, TR-14280 Bolu, Turkey.
EM gevrendilek@ibu.edu.tr
FU Scientific and Technological Research Council of Turkey (TUBITAK)
[104O585]
FX The authors would like to thank the Scientific and Technological
Research Council of Turkey (TUBITAK) for supporting TUBITAK KARIYER
project (project number 104O585) and Dimes ida San ve Tic Ltd Sti
(Tokat, Turkey) for providing apricot nectar.
NR 30
TC 5
Z9 5
U1 2
U2 46
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1094-2912
J9 INT J FOOD PROP
JI Int. J. Food Prop.
PY 2013
VL 16
IS 1
BP 216
EP 227
DI 10.1080/10942912.2010.551307
PG 12
WC Food Science & Technology
SC Food Science & Technology
GA 031AF
UT WOS:000310610600019
ER
PT J
AU Cabello-Conejo, MI
Centofanti, T
Kidd, PS
Prieto-Fernandez, A
Chaney, RL
AF Cabello-Conejo, M. I.
Centofanti, T.
Kidd, P. S.
Prieto-Fernandez, A.
Chaney, R. L.
TI EVALUATION OF PLANT GROWTH REGULATORS TO INCREASE NICKEL PHYTOEXTRACTION
BY ALYSSUM SPECIES
SO INTERNATIONAL JOURNAL OF PHYTOREMEDIATION
LA English
DT Article
DE hyperaccumulator; nickel; phytohormones; PGRs; cytokinins; gibberellins
ID SEDUM-ALFREDII; METAL UPTAKE; LEAD UPTAKE; MURALE; EDTA; IAA; NI;
PHYTOREMEDIATION; ACCUMULATION; ENHANCEMENT
AB Recent studies have shown that application of phytohormones to shoots of Alyssum murale increased biomass production but did not increase Ni shoot concentration. Increased biomass and Ni phytoextraction efficiency is useful to achieve economically viable phytomining. The objective of this study was to evaluate the effect of two types of phytohormones on the Ni phytoextraction capacity of four Alyssum species. Two different commercially available phytohormones (Cytokin (R) and Promalin (R)) based on cytokinins and/or gibberellins were applied on shoot biomass of four Ni hyperaccumulating Alyssum species (A. corsicum, A. malacitanum, A. murale, and A. pintodasilvae). Cytokin was applied in two concentrations and promalin in one concentration. The application of phytohormones had no clear positive effect on biomass production, Ni accumulation and Ni phytoextraction efficiency in the studied Alyssum species. A. malacitanum was the only species in which a significantly negative effect of these treatments was observed (in Ni uptake). A slightly positive response to promalin treatment was observed in the biomass production and Ni phytoextraction efficiency of A. corsicum. Although this effect was not significant it does indicate a potential application of these approaches to improve phytoextraction ability. Further studies will be needed to identify the most adequate phytohormone treatment as well as the appropriate concentrations and application times.
C1 [Cabello-Conejo, M. I.; Kidd, P. S.; Prieto-Fernandez, A.] CSIC, Santiago De Compostela 15706, Spain.
[Centofanti, T.] Univ Maryland, Dept Civil & Environm Engn, College Pk, MD 20742 USA.
[Centofanti, T.; Chaney, R. L.] USDA ARS, Environm Management & Byprod Utilizat Lab, Beltsville, MD USA.
RP Cabello-Conejo, MI (reprint author), CSIC, Santiago De Compostela 15706, Spain.
EM maribel.cabello@iiag.csic.es
RI Prieto-Fernandez, Angeles/B-5349-2013
OI Prieto-Fernandez, Angeles/0000-0003-2601-1528
FU Ministerio de Ciencia e Innovacion [CTM2009-14576-CO2-01];
USDA-Agricultural Research Service, Environmental Management & Byproduct
Utilization Laboratory, Beltsville (MD), USA
FX This research was supported by the Ministerio de Ciencia e Innovacion
(CTM2009-14576-CO2-01) and USDA-Agricultural Research Service,
Environmental Management & Byproduct Utilization Laboratory, Beltsville
(MD), USA and presented at the 7th International Conference on
Serpentine Ecology in Coimbra, Portugal on June 2011.
NR 32
TC 8
Z9 9
U1 0
U2 31
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1522-6514
J9 INT J PHYTOREMEDIAT
JI Int. J. Phytoremediat.
PY 2013
VL 15
IS 4
BP 365
EP 375
DI 10.1080/15226514.2012.702806
PG 11
WC Environmental Sciences
SC Environmental Sciences & Ecology
GA 030YA
UT WOS:000310604800007
PM 23488002
ER
PT J
AU Butler, JE
Wertz, N
Sun, XZ
Lunney, JK
Muyldermans, S
AF Butler, J. E.
Wertz, N.
Sun, X. -Z.
Lunney, J. K.
Muyldermans, S.
TI Resolution of an immunodiagnostic dilemma: Heavy chain chimeric
antibodies for species in which plasmocytomas are unknown
SO MOLECULAR IMMUNOLOGY
LA English
DT Article
DE IgG subclasses; Allotypes; Swine; In vitro synthesis
ID LINKED-IMMUNOSORBENT-ASSAY; REPERTOIRE DEVELOPMENT; NEONATAL PIGLETS;
LIGHT-CHAINS; BOVINE IGG2; GENE FAMILY; IMMUNOGLOBULINS; HETEROGENEITY;
SEQUENCE; RABBIT
AB The immunoglobulin (Ig) genes of many vertebrates have been characterized but IgG subclasses, IgD and IgE proteins are only available for three species in which plasmacytomas occur. This creates a major problem in the production and specificity verification of diagnostic anti-Ig reagents for the vast majority of mammals. We describe a novel solution using the swine system with its eleven different variants of IgG. It involves the in vitro synthesis of chimeric porcine-camelid heavy chain antibodies (HCAbs) that do not require light chains and therefore only a single transfection vector. The expressed chimeric HCAbs are comprised of the camelid VHH domain encoding specificity for lysozyme and the hinge, CH2 and CH3 domains of the various porcine IgGs. These HCAb retain their antigenic integrity and their ability to recognize lysozyme. The engineered specificity assures that these HCAb can be immobilized in native configuration when used for testing the specificity of anti-swine IgG antibodies. Comparative data to illustrate the importance of this point are provided. These are now available for use in hybridoma selection and as reference standards for evaluating the specificity of currently available anti-swine IgG antibodies. (C) 2012 Elsevier Ltd. All rights reserved.
C1 [Butler, J. E.; Wertz, N.; Sun, X. -Z.] Univ Iowa, Dept Microbiol, Iowa City, IA 52242 USA.
[Butler, J. E.; Wertz, N.; Sun, X. -Z.] Univ Iowa, Interdisciplinary Immunol Program, Iowa City, IA 52242 USA.
[Muyldermans, S.] ARS, Anim Parasite Dis Lab, ANRI, USDA, Beltsville, MD USA.
[Lunney, J. K.] Vrije Univ Brussel, Lab Cellular & Mol Immunol, B-1050 Brussels, Belgium.
[Butler, J. E.; Wertz, N.; Sun, X. -Z.; Lunney, J. K.; Muyldermans, S.] VIB, Dept Biol Struct, Brussels, Belgium.
RP Butler, JE (reprint author), Univ Iowa, Dept Microbiol, Iowa City, IA 52242 USA.
EM a.balm@nki.nl
RI Muyldermans, Serge/C-6418-2016
OI Muyldermans, Serge/0000-0002-3678-3575
FU USDA-AFRI NIFA/DHS [2010-39559-21860]; National Porkboard
[58-1265-5-053]; UMASS-DVLP [11-006340]
FX Research supported by USDA-AFRI NIFA/DHS grant 2010-39559-21860. Jessica
Jew, University of Iowa, Pat Boyd ANRI-USDA and Ann Kindt, Vrije
Universiteit Brussels.; Research supported by grant 58-1265-5-053 from
the National Porkboard and UMASS-DVLP Subcontract 11-006340.
NR 49
TC 5
Z9 5
U1 1
U2 7
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0161-5890
J9 MOL IMMUNOL
JI Mol. Immunol.
PD JAN-FEB
PY 2013
VL 53
IS 1-2
BP 140
EP 148
DI 10.1016/j.molimm.2012.07.008
PG 9
WC Biochemistry & Molecular Biology; Immunology
SC Biochemistry & Molecular Biology; Immunology
GA 017VF
UT WOS:000309618400016
PM 22922509
ER
PT J
AU Li, Y
Zhong, F
Ji, W
Yokoyama, W
Shoemaker, CF
Zhu, S
Xia, WS
AF Li, Yue
Zhong, Fang
Ji, Wei
Yokoyama, Wallace
Shoemaker, Charles F.
Zhu, Song
Xia, Wenshui
TI Functional properties of Maillard reaction products of rice protein
hydrolysates with mono-, oligo- and polysaccharides
SO FOOD HYDROCOLLOIDS
LA English
DT Article
DE Rice protein; Maillard reaction; Enzymatic hydrolysis; Emulsifying
properties; Solubility
ID EMULSIFYING PROPERTIES; BETA-LACTOGLOBULIN; CASEIN SYSTEMS; FOOD; SUGAR;
FLUORESCENCE; SACCHARIDES; STABILITY; MODEL; PH
AB The Maillard reaction was carried out under wet reaction conditions using rice protein product from limited hydrolysis to conjugate with various mono-, oligo- and polysaccharides. The Maillard reaction products (MRPs) prepared with rice protein hydrolysates at 5% degree (hydrolysed by Protease N) and dextran T20 (20 min at 100 degrees C) showed the greatest improvement in functionality. The solubility, emulsification activity (EA), and emulsification stability (ES) of the MRPs increased by factors of 3.5, 5.3 and 7.3 times, respectively as compared to MRPs formed with native rice proteins and dextran T20. Amino acid analysis indicated that lysine and arginine decreased significantly in the MRPs. Formation of MRPs reduced the surface hydrophobicity, which was in agreement with the change of solubility. However, further decreasing of the surface hydrophobicity resulted in lower EA and ES during the late stage of the reaction. Fluorescence analysis suggested that formation of late stage MRPs occurred after 20 min of the Maillard reaction. The molecular weight distributions showed that the functional properties of MRPs and the mechanisms of formation were affected by the peptide chain length. (C) 2012 Elsevier Ltd. All rights reserved.
C1 [Li, Yue; Zhong, Fang; Ji, Wei; Zhu, Song; Xia, Wenshui] Jiangnan Univ, Sch Food Sci & Technol, Key Lab Food Colloids & Biotechnol, Minist Educ, Wuxi 214122, Peoples R China.
[Yokoyama, Wallace] ARS, USDA, Albany, CA 94710 USA.
[Shoemaker, Charles F.] Univ Calif Davis, Dept Food Sci & Technol, Davis, CA 95616 USA.
RP Zhong, F (reprint author), Jiangnan Univ, Sch Food Sci & Technol, Key Lab Food Colloids & Biotechnol, Minist Educ, 1800 Lihu Ave, Wuxi 214122, Peoples R China.
EM yue_li1@yahoo.com.cn
FU National Nature Science Foundation of China [30901000, 31171686];
Fundamental Research Funds for the Central Universities [JUSRP11015];
National Twelfth-Five Year Research Program of China [2011BAD23B02]
FX We gratefully acknowledge the financial support of National Nature
Science Foundation of China (30901000 and 31171686). This work was also
supported by the Fundamental Research Funds for the Central Universities
JUSRP11015 and National Twelfth-Five Year Research Program of China
2011BAD23B02.
NR 33
TC 28
Z9 32
U1 9
U2 101
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0268-005X
J9 FOOD HYDROCOLLOID
JI Food Hydrocolloids
PD JAN
PY 2013
VL 30
IS 1
BP 53
EP 60
DI 10.1016/j.foodhyd.2012.04.013
PG 8
WC Chemistry, Applied; Food Science & Technology
SC Chemistry; Food Science & Technology
GA 016XV
UT WOS:000309554100007
ER
PT J
AU Muhammad, A
AF Muhammad, Andrew
TI Estimating import demand in the presence of seasonal trade and
unobserved prices
SO APPLIED ECONOMICS LETTERS
LA English
DT Article
DE apples; demand; imports; prices; seasonal
ID SYSTEM
AB Estimating import demand is particularly difficult when trade is seasonal because prices do not exist for observations with no recorded transaction. Fresh apple imports in the United Kingdom provide a perfect case of this particular problem due to periodic trade. In this study, the differenced version of the almost ideal demand system is employed for estimating import demand by source and an iterative procedure is developed for deriving choke prices (prices at which imports are zero) and import demand estimates. The appeal of this procedure is that the final estimates and choke prices are not sensitive to the starting values used for the initial estimation. When comparing the results of the choke price procedure to a more traditional approach of eliminating zeros by aggregating across countries, significant differences emerge. Results clearly show that the aggregate estimates do not adequately reflect the pattern of UK imports from seasonal suppliers.
C1 Econ Res Serv, Markets & Trade Econ Div, USDA, Washington, DC USA.
RP Muhammad, A (reprint author), Econ Res Serv, Markets & Trade Econ Div, USDA, Washington, DC USA.
EM amuhammad@ers.usda.gov
NR 12
TC 1
Z9 1
U1 0
U2 5
PU ROUTLEDGE JOURNALS, TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXFORDSHIRE, ENGLAND
SN 1350-4851
J9 APPL ECON LETT
JI Appl. Econ. Lett.
PY 2013
VL 20
IS 5
BP 446
EP 451
DI 10.1080/13504851.2012.709595
PG 6
WC Economics
SC Business & Economics
GA 008UT
UT WOS:000308982800008
ER
PT J
AU Sivakumar, D
Wall, MM
AF Sivakumar, Dharini
Wall, Marisa M.
TI Papaya Fruit Quality Management during the Postharvest Supply Chain
SO FOOD REVIEWS INTERNATIONAL
LA English
DT Review
DE Carica papaya; Fruit quality; Health-promoting compounds; Postharvest
management practices; Tropical fruit
ID INTERNAL YELLOWING DISEASE; AIR QUARANTINE TREATMENT; L SOLO VARIETY;
CARICA-PAPAYA; HEAT-TREATMENT; VOLATILE COMPONENTS; GAMMA-IRRADIATION;
CHILLING INJURY; STORAGE-TEMPERATURE; MINERAL-COMPOSITION
AB Papayas are popular in tropical and subtropical regions and are being exported in large volumes to Europe, the United States, and Japan. The fruit has a sweet, exotic flavor and is rich in vitamins A and C and antioxidants. However, due to its highly perishable nature, it has not emerged as a major traded fruit. Papayas are highly susceptible to qualitative and quantitative postharvest losses. Maintenance of papaya fruit quality during the supply chain depends on orchard management, harvesting practices, packing operations, postharvest treatments, temperature management, and transportation and storage conditions. Postharvest losses are attributed to mechanical damage, rapid flesh softening, decay, physiological disorders, pest infestation, and improper temperature management. The aim of postharvest technology and management in the supply chain is to provide favorable conditions to extend storage life and retain quality and nutritional attributes. This review focuses on the available research findings to retain overall papaya fruit quality and to reduce postharvest losses during the supply chain via adopting appropriate or novel postharvest technologies.
C1 [Sivakumar, Dharini] Tshwane Univ Technol, Dept Crop Sci, Postharvest Technol Grp, Pretoria, South Africa.
[Wall, Marisa M.] Agr Res Serv, USDA, US Pacific Basin Agr Res Ctr, Hilo, HI USA.
RP Sivakumar, D (reprint author), Tshwane Univ Technol, Dept Crop Sci, Postharvest Technol Grp, Pretoria, South Africa.
EM dharinisivakumar@yahoo.co.uk
OI Sivakumar, Dharini/0000-0001-7645-7857
NR 149
TC 4
Z9 4
U1 6
U2 61
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 8755-9129
J9 FOOD REV INT
JI Food Rev. Int.
PY 2013
VL 29
IS 1
BP 24
EP 48
DI 10.1080/87559129.2012.692138
PG 25
WC Food Science & Technology; Nutrition & Dietetics
SC Food Science & Technology; Nutrition & Dietetics
GA 008UJ
UT WOS:000308981800002
ER
PT J
AU Felker, P
Takeoka, G
Dao, L
AF Felker, Peter
Takeoka, Gary
Dao, Lan
TI Pod Mesocarp Flour of North and South American Species of Leguminous
Tree Prosopis (Mesquite): Composition and Food Applications
SO FOOD REVIEWS INTERNATIONAL
LA English
DT Review
DE Algarrobo; Allergens; Aroma; Browning; Celiac; Desertification; Fiber;
Gluten-free; Legume; Semiarid
ID ANTIOXIDANT CAPACITY; JULIFLORA; ALKALOIDS; NITROGEN; CLONING; PROTEIN;
SEEDS; ELITE; ALBA; IDENTIFICATION
AB Flour from the mesocarp of pods of the tree legume known as mesquite (Prosopis spp.) in North America or algarrobo in South America was one of the most important food staples for desert people. Contemporary milling techniques produce a flour similar to that of indigenous peoples that is about 40% sucrose, 25% dietary fiber, and that has a variety of volatiles, such as 2,6-dimethylpyrazine, gamma-nonalactone, methyl salicylate, and 5,6-dihydro-6-propyl-2H-pyran-2-one, that contribute to a chocolate and coconut-like aroma. Flour made from the mesocarp contains no stachyose or raffinose, sugars that are responsible for flatulence in other legumes. High-performance liquid chromatography (HPLC) analyses of sugar (sucrose) and citric, malic, and ascorbic acids found considerable ranges in acid/sugar ratio that may be responsible for the wide variations in organoleptic perception. Due to the absence of gliadin, peanut, and soy allergens, the flour is useful in gluten-free formulations. Optimum concentrations for incorporation ranged from 5% for biscuits, 10% for breads, 15% for pancakes/muffins, and 50% in chapatti and drum-dried wheat flour. At these concentrations, considerable browning occurs, which is generally considered to be desirable.
C1 [Felker, Peter] Casa Mesquite, Hollister, CA 95023 USA.
[Takeoka, Gary; Dao, Lan] Agr Res Serv, Western Reg Res Ctr, USDA, Albany, CA USA.
RP Felker, P (reprint author), Casa Mesquite, 10021 Pacheco Pass Highway, Hollister, CA 95023 USA.
EM Peter_Felker@hotmail.com
NR 69
TC 9
Z9 9
U1 0
U2 43
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 8755-9129
J9 FOOD REV INT
JI Food Rev. Int.
PY 2013
VL 29
IS 1
BP 49
EP 66
DI 10.1080/87559129.2012.692139
PG 18
WC Food Science & Technology; Nutrition & Dietetics
SC Food Science & Technology; Nutrition & Dietetics
GA 008UJ
UT WOS:000308981800003
ER
PT J
AU Somwaru, AL
AF Somwaru, Agapi Lambrini
TI Does trade liberalization and its associated increased economic activity
affect permanently the value and pattern of trade flows?
SO APPLIED ECONOMICS
LA English
DT Article
DE CGE model; trade flows; tariff removal; density functions
ID DEVELOPING-COUNTRIES; DEVELOPMENT SPILLOVERS; GROWTH; OPENNESS
AB Despite a number of multi-country case studies based on a variety of analytical frameworks and numerous econometric studies using large cross-country data sets that analyse trade openness and its induced economic activities that alters both the volume and value of trade flows, there is still disagreement among economists concerning the nature of this relationship. In this article, we follow a rather unique approach by estimating the density functions of the observed trade flows and the density functions of trade flows generated by tariff removal using an intertemporal global Computable General Equilibrium (CGE) model. Our inquiry is whether or not the trade flows generated by global tariff elimination impact economies in the long-run and alter their historical underlying distributions. If the latter case prevails, it implies that the economies follow a different transitional path into a new steady-state equilibrium. The density functions, estimated parameters and higher moments of the observed trade flow distributions are distinctly different from the parameter estimates of the trade flows generated by the model. In this sense, trade-inducing economic activity as generated by tariff removal and captured by the neoclassical specification of the model is associated with trade flows along a different transitional path from the observed trade flows.
C1 USDA, Econ Res Serv, Washington, DC 20250 USA.
RP Somwaru, AL (reprint author), USDA, Econ Res Serv, Washington, DC 20250 USA.
EM agapi.somwaru@yahoo.com
NR 26
TC 1
Z9 1
U1 0
U2 1
PU ROUTLEDGE JOURNALS, TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXFORDSHIRE, ENGLAND
SN 0003-6846
J9 APPL ECON
JI Appl. Econ.
PY 2013
VL 45
IS 23
BP 3263
EP 3277
DI 10.1080/00036846.2012.703312
PG 15
WC Economics
SC Business & Economics
GA 996OG
UT WOS:000308099400001
ER
PT J
AU Cannon, JB
Cantrell, CL
Astatkie, T
Zheljazkov, VD
AF Cannon, Jeffery B.
Cantrell, Charles L.
Astatkie, Tess
Zheljazkov, Valtcho D.
TI Modification of yield and composition of essential oils by distillation
time
SO INDUSTRIAL CROPS AND PRODUCTS
LA English
DT Article
DE Essential oil; Distillation; Lemongrass; Peppermint; Palmarosa
ID VAR. MOTIA BURK.; CYMBOPOGON-MARTINII; HARVEST TIME; PEPPERMINT
PRODUCTIVITY; QUALITY; NITROGEN; PIPERITA; STAGE
AB Altering the distillation times of economically important essential oils such as peppermint (Mentha x piperita L), lemongrass (Cymbopogon flexuosus Steud.), and palmarosa (Cymbopogon martini( Roxb.) oils may allow producers to increase the production, engineer the composition, and decrease the energy required for distillation. Experiments were conducted to model essential oil yield and oil composition of peppermint, lemongrass, and palmarosa oils as a function of the length of the steam distillation time (DT). Maximum essential oil yields of peppermint, lemongrass, and palmarosa were achieved at a DT of 20 min: further increases in DT did not increase oil yields. In lemongrass and palmarosa experiments. DTs of 240 min led to 25-40% reductions in oil yield compared to yields at 20-160 min. This study demonstrated that DT can be used as a tool for obtaining essential oils with specific targeted composition from peppermint, lemongrass, and palmarosa. Secondly, the study found that the optimum length of the DT for maximum essential oil yields of peppermint, lemongrass, and palmarosa was much shorter than the time usually used by researchers and processors. Shorter DT may save producers and processors energy costs and other resources. This study also suggests that comparison of data on oil composition must take into consideration the length of the DT. (C) 2012 Elsevier B.V. All rights reserved.
C1 [Cannon, Jeffery B.; Cantrell, Charles L.] Agr Res Serv, Nat Prod Utilizat Res Unit, USDA, University, MS 38677 USA.
[Astatkie, Tess] Nova Scotia Agr Coll, Dept Engn, Truro, NS B2N 5E3, Canada.
[Zheljazkov, Valtcho D.] Mississippi State Univ, N Mississippi Res & Extens Ctr, Verona, MS 38879 USA.
RP Zheljazkov, VD (reprint author), Univ Wyoming, Sheridan Res & Extens Ctr, 663 Wyarno Rd, Sheridan, WY 82801 USA.
EM vjeliazk@uwyo.edu
RI Astatkie, Tess/J-7231-2012
OI Astatkie, Tess/0000-0002-9779-8789
FU ARS [58-64-2-4-026]; CRIS [MIS-172050]
FX We thank Thomas Horgan, Solomon Green III and Amber Reichley for
technical assistance. This research was funded partially by ARS Specific
Cooperative Agreement 58-64-2-4-026 with CRIS MIS-172050, specific
project "Field Establishment of Medicinal Herbs and Potential for
Commercial Production" awarded to V.D.Z. (Jeliazkov).
NR 23
TC 19
Z9 21
U1 0
U2 31
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0926-6690
J9 IND CROP PROD
JI Ind. Crop. Prod.
PD JAN
PY 2013
VL 41
BP 214
EP 220
DI 10.1016/j.indcrop.2012.04.021
PG 7
WC Agricultural Engineering; Agronomy
SC Agriculture
GA 977RC
UT WOS:000306681100031
ER
PT J
AU Li, XJ
Wu, YQ
Cai, ZY
Winandy, JE
AF Li, Xianjun
Wu, Yiqiang
Cai, Zhiyong
Winandy, Jerrold E.
TI Primary properties of MDF using thermomechanical pulp made from oxalic
acid pretreated rice straw particles
SO INDUSTRIAL CROPS AND PRODUCTS
LA English
DT Article
DE Rice straw; Pretreatment; Thermo-mechanical defibration; MDF panel;
Primary properties
ID UF-BONDED REED; MEDIUM-DENSITY FIBERBOARD; SILANE COUPLING AGENT;
WHEAT-STRAW; WOOD; CONSTRUCTION; PERFORMANCE; COMPOSITE; MECHANISM;
BIOMASS
AB The main objective of this study is to evaluate the effect the oxalic acid (OA) and steam pretreatment on the primary properties of rice straw medium-density fiberboard (MDF). The results show the IB strength increased about 9.6% and 13.4% for steam-treated MDF (PC) and OA-treated MDF compared with raw control panels, while OA pretreatment has a slight negative effect on the bending properties of MDF. Generally, the steam-treated and OA-treated panels exhibit a slightly improved dimensional stability, but the difference is not significant compared with raw control panels. The thermo-mechanical defibration process is the main factor to improve the bond-ability between UF resin and rice straw, which resulted in good quality rice straw MDF. The mechanical strength of rice straw MDF can meet ANSI standard for interior MDF, but the LE and TS of MDF without paraffin wax addition is lower than the minimal requirement of the ANSI standard. MDF is one of the most feasible products for utilizing rice straw. (C) 2012 Elsevier B.V. All rights reserved.
C1 [Li, Xianjun; Cai, Zhiyong] US Forest Serv, USDA, Forest Prod Lab, Madison, WI 53726 USA.
[Li, Xianjun; Wu, Yiqiang] Cent S Univ Forestry & Technol, Mat Sci & Engn Sch, Changsha 410004, Hunan, Peoples R China.
[Winandy, Jerrold E.] Univ Minnesota, St Paul, MN 55108 USA.
RP Cai, ZY (reprint author), US Forest Serv, USDA, Forest Prod Lab, Madison, WI 53726 USA.
EM lxjmu@yahoo.cn; wuyq0506@126.com; Zcai@fs.fed.us; jwinandy@umn.edu
FU Chinese Education Program for New Century Excellent Talents
FX The authors thank Mr. Eric Horn of Biopulping International Inc.,
Madison, WI, USA, for his kind support and help with the rice straw
pretreatment process in this research. Thanks for the support of Chinese
Education Program for New Century Excellent Talents.
NR 32
TC 4
Z9 5
U1 0
U2 19
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0926-6690
J9 IND CROP PROD
JI Ind. Crop. Prod.
PD JAN
PY 2013
VL 41
BP 414
EP 418
DI 10.1016/j.indcrop.2012.04.039
PG 5
WC Agricultural Engineering; Agronomy
SC Agriculture
GA 977RC
UT WOS:000306681100062
ER
PT J
AU Liu, ZS
Shah, SN
Evangelista, RL
Isbell, TA
AF Liu, Zengshe
Shah, Shailesh N.
Evangelista, Roque L.
Isbell, Terry A.
TI Polymerization of euphorbia oil with Lewis acid in carbon dioxide media
SO INDUSTRIAL CROPS AND PRODUCTS
LA English
DT Article
DE Euphorbia oil; Ring-opening polymerization; Carbon dioxide; Boron
trifluoride diethyl etherate
ID SOYBEAN OIL; SUPERCRITICAL FLUIDS; VEGETABLE-OILS; COMPOSITES;
CATALYSIS; POLYMERS; SOLVENTS; LIGNIN
AB Boron trifluoride diethyl etherate (BF3 center dot OEt2) catalyzed ring-opening polymerization of euphorbia oil (EuO), natural epoxy oil, in liquid carbon dioxide was conducted in an effort to develop useful vegetable oil based polymers. The resulting polymers (RPEuO) were characterized by FTIR, H-1 NMR, C-13 NMR, solid state C-13 NMR spectroscopies, differential scanning calorimetry (DSC), thermogravimetric analysis (TGA), and gel permeation chromatography (GPC). The results indicated that the ring-opening polymerization of EuO occurred at mild conditions, such as at room temperature, and a subcritical carbon dioxide (CO2) pressure of 65.5 bar. The formed RPEuO materials were cross-linked polymers. The glass transition temperatures of these polymers ranged from -15.0 to 22.7 degrees C. TGA results showed that the RPEuO polymers were thermally stable at temperatures lower than 220 degrees C and significant decomposition mainly occurred above 340 degrees C. Published by Elsevier B.V.
C1 [Liu, Zengshe; Shah, Shailesh N.; Evangelista, Roque L.; Isbell, Terry A.] ARS, NCAUR, USDA, Peoria, IL 61604 USA.
RP Liu, ZS (reprint author), ARS, NCAUR, USDA, 1815 N Univ St, Peoria, IL 61604 USA.
EM kevin.liu@ars.usda.gov
NR 35
TC 5
Z9 5
U1 0
U2 22
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0926-6690
J9 IND CROP PROD
JI Ind. Crop. Prod.
PD JAN
PY 2013
VL 41
BP 10
EP 16
DI 10.1016/j.indcrop.2012.04.008
PG 7
WC Agricultural Engineering; Agronomy
SC Agriculture
GA 977RC
UT WOS:000306681100002
ER
PT J
AU Selling, GW
Hojilla-Evangelista, MP
Evangelista, RL
Isbell, T
Price, N
Doll, KM
AF Selling, Gordon W.
Hojilla-Evangelista, Mila P.
Evangelista, Roque L.
Isbell, Terry
Price, Neil
Doll, Kenneth M.
TI Extraction of proteins from pennycress seeds and press cake
SO INDUSTRIAL CROPS AND PRODUCTS
LA English
DT Article
DE Pennycress; Protein extraction; Biodiesel; Calorimetry
ID THLASPI-ARVENSE L.; CIRCULAR-DICHROISM; STORAGE PROTEINS; ADHESIVES;
FRACTIONATION; PRODUCTS; PLANTS; ZEIN; OIL
AB In order to more fully utilize pennycress. a potentially viable bio-diesel source, the proteinaceous components were extracted from pennycress seeds and press cake. The amino acid composition of the proteins present in pennycress was typical for proteins derived from plants, with glycine, glutamic acid and alanine being prevalent. Water, 0.5 M sodium chloride, 60% acetic acid. 0.1 M sodium hydroxide and ethanol were used in sequential order to remove the protein from pennycress seeds and press cake and determine the various soluble protein fractions. Extraction temperature was varied from 5 to 77 degrees C. The highest yield of material (35%) was obtained by extracting pennycress seeds with water at 77 degrees C. However, this material had only moderate levels of protein (25%) with the remainder being carbohydrates and oil (as determined by infrared spectroscopy). The use of 0.5 M sodium chloride to remove protein from press cake at 5 degrees C produced material with the highest protein content (83%), but extraction yield was 25%. When extractions were carried out at 77 degrees C, oil typically began to be a major impurity in the protein. Using bomb calorimetry, the material remaining after extraction was found to have some value as a fuel source. Published by Elsevier B.V.
C1 [Selling, Gordon W.; Hojilla-Evangelista, Mila P.] USDA ARS, Plant Polymer Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
[Evangelista, Roque L.; Isbell, Terry; Doll, Kenneth M.] USDA ARS, Biooils Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
[Price, Neil] USDA ARS, Renewable Prod Technol Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
RP Selling, GW (reprint author), USDA ARS, Plant Polymer Res Unit, Natl Ctr Agr Utilizat Res, 1815N Univ St, Peoria, IL 61604 USA.
EM gordon.selling@ars.usda.gov
NR 36
TC 11
Z9 11
U1 3
U2 28
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0926-6690
J9 IND CROP PROD
JI Ind. Crop. Prod.
PD JAN
PY 2013
VL 41
BP 113
EP 119
DI 10.1016/j.indcrop.2012.04.009
PG 7
WC Agricultural Engineering; Agronomy
SC Agriculture
GA 977RC
UT WOS:000306681100018
ER
PT J
AU Ferreira, JFS
Zheljazkov, VD
Gonzalez, JM
AF Ferreira, Jorge F. S.
Zheljazkov, Valtcho D.
Gonzalez, Javier M.
TI Artemisinin concentration and antioxidant capacity of Artemisia annua
distillation byproduct
SO INDUSTRIAL CROPS AND PRODUCTS
LA English
DT Article
DE Artemisinin; Essential oil yield; Steam distillation; Distillation
byproduct; Pressurized liquid extraction; Accelerated solvent
extraction; Hot water extraction; Artemisinin water solubility
ID ESSENTIAL OIL; L.; EXTRACTS; PEPPERMINT; INFECTION; MALARIA; YIELD; TEA
AB Artemisia annua is mostly known as the source of artemisinin, the raw material for the production of artemisinin-based combination therapy, used against drug-resistant Plasmodium falciparum where malaria is endemic. Artemisinin is also effective against helminthic and protozoan parasites that afflict both humans and livestock. Besides being the only commercial source of artemisinin, the plant contains a pleasantly aromatic essential oil valued in perfumery and cosmetics. However, multi-use of the leaf biomass for the production of artemisinin, essential oil, and antioxidants has never been investigated. The objectives of this research were to evaluate the effect of distillation time of A. annua biomass on essential oil yield, artemisinin concentration, and antioxidant capacity of the plant residue from distillation (PRD). Results demonstrated that leaf biomass can be explored for both essential oil and as a source of antioxidants, but the PRD is devoid of artemisinin. The high antioxidant capacity of the PRD (75% of the control samples) suggests that the industrial byproduct used to produce the essential oil is also a potential source of antioxidants for use as a livestock feed supplement or as a source of compounds for the nutraceuticals market. (C) 2012 Elsevier B.V. All rights reserved.
C1 [Zheljazkov, Valtcho D.] Univ Wyoming, Sheridan Res & Extens Ctr, Sheridan, WY 82801 USA.
[Ferreira, Jorge F. S.; Gonzalez, Javier M.] ARS, USDA, Appalachian Farming Syst Res Ctr, Beaver, WV 25813 USA.
RP Zheljazkov, VD (reprint author), Univ Wyoming, Sheridan Res & Extens Ctr, 663 Wyarno Rd, Sheridan, WY 82801 USA.
EM vjeliazk@uwyo.edu
OI Ferreira, Jorge F.S./0000-0003-4550-6761
NR 31
TC 9
Z9 9
U1 2
U2 24
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0926-6690
J9 IND CROP PROD
JI Ind. Crop. Prod.
PD JAN
PY 2013
VL 41
BP 294
EP 298
DI 10.1016/j.indcrop.2012.05.005
PG 5
WC Agricultural Engineering; Agronomy
SC Agriculture
GA 977RC
UT WOS:000306681100043
ER
PT J
AU Sheldon, I
Mishra, SK
Pick, D
Thompson, SR
AF Sheldon, I.
Mishra, S. Khadka
Pick, D.
Thompson, S. R.
TI Exchange rate uncertainty and US bilateral fresh fruit and fresh
vegetable trade: an application of the gravity model
SO APPLIED ECONOMICS
LA English
DT Article
DE exchange rates; uncertainty; fresh fruit and fresh vegetables; panel
data sets
ID PURCHASING POWER PARITY; INTERNATIONAL-TRADE; AGRICULTURAL TRADE; RATE
VOLATILITY; MONOPOLISTIC COMPETITION; CURRENCY UNION; WORLD-TRADE;
LONG-RUN; EQUATION; REAL
AB In order to analyse the effect of exchange rate uncertainty, we apply an empirical gravity equation to two sets of US bilateral trade data: fresh fruit over the period 1976-1999 for a panel of 26 countries; and fresh vegetables over the period 1976-2006 for a panel of nine countries. Based on panel estimation methods, and using both a moving SD measure and the Peree and Steinherr (1989) measure of exchange rate uncertainty, the results show that US bilateral fresh fruit trade has been negatively affected by exchange rate uncertainty. We also find some evidence that the exchange rate between the US dollar and the currencies of Latin American trading partners accounts for most of the negative impact of exchange rate uncertainty on bilateral trade flows in fresh fruit. In contrast, when using panel estimation methods and both measures of exchange rate uncertainty, we find no statistically significant evidence for any negative effect of exchange rate uncertainty on US bilateral fresh vegetable trade. However, we do find a statistically significant negative effect for exchange rate uncertainty when we estimate a US export gravity equation for fresh vegetables using the same panel of countries.
C1 [Sheldon, I.; Mishra, S. Khadka; Thompson, S. R.] Ohio State Univ, Dept Agr Environm & Dev Econ, Columbus, OH 43210 USA.
[Pick, D.] USDA, Econ Res Serv, Washington, DC USA.
RP Sheldon, I (reprint author), Ohio State Univ, Dept Agr Environm & Dev Econ, Columbus, OH 43210 USA.
EM sheldon.1@osu.edu
NR 82
TC 7
Z9 8
U1 5
U2 24
PU ROUTLEDGE JOURNALS, TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXFORDSHIRE, ENGLAND
SN 0003-6846
EI 1466-4283
J9 APPL ECON
JI Appl. Econ.
PY 2013
VL 45
IS 15
BP 2067
EP 2082
DI 10.1080/00036846.2011.650330
PG 16
WC Economics
SC Business & Economics
GA 936HX
UT WOS:000303582600012
ER
PT J
AU Schmelcher, M
Korobova, O
Schischkova, N
Kiseleva, N
Kopylov, P
Pryamchuk, S
Donovan, DM
Abaev, I
AF Schmelcher, Mathias
Korobova, Olga
Schischkova, Nina
Kiseleva, Natalia
Kopylov, Paul
Pryamchuk, Sergey
Donovan, David M.
Abaev, Igor
TI Staphylococcus haemolyticus prophage Phi SH2 endolysin relies on
cysteine, histidine-dependent amidohydrolases/peptidases activity for
lysis 'from without'
SO JOURNAL OF BIOTECHNOLOGY
LA English
DT Article
DE Mastitis; Phage endolysin; Coagulase negative staphylococci
ID PEPTIDOGLYCAN CROSS-BRIDGES; BACTERIOPHAGE-LYTIC ENZYMES; SOMATIC-CELL
COUNT; ENDOPEPTIDASE RESISTANCE; ANTIBIOTIC-RESISTANCE; BACTERIOLYTIC
AGENT; MASTITIS PATHOGENS; BOVINE MASTITIS; UNITED-STATES; AUREUS
AB Staphylococcus aureus is an important pathogen, with methicillin-resistant (MRSA) and multi-drug resistant strains becoming increasingly prevalent in both human and veterinary clinics. S. aureus causing bovine mastitis yields high annual losses to the dairy industry. Conventional treatment of mastitis by broad range antibiotics is often not successful and may contribute to development of antibiotic resistance. Bacteriophage endolysins present a promising new source of antimicrobials. The endolysin of prophage Phi SH2 of Staphylococcus haemolyticus strain JCSC1435 (Phi SH2 lysin) is a peptidoglycan hydrolase consisting of two catalytic domains (CHAP and amidase) and an SH3b cell wall binding domain. In this work, we demonstrated its lytic activity against live staphylococcal cells and investigated the contribution of each functional module to bacterial lysis by testing a series of deletion constructs in zymograms and turbidity reduction assays. The CHAP domain exhibited three-fold higher activity than the full length protein and optimum activity in physiological saline. This activity was further enhanced by the presence of bivalent calcium ions. The SH3b domain was shown to be required for full activity of the complete Phi SH2 lysin. The full length enzyme and the CHAP domain showed activity against multiple staphylococcal strains, including MRSA strains, mastitis isolates, and CoNS. Published by Elsevier B.V.
C1 [Donovan, David M.] ARS, Anim Biosci & Biotechnol Lab, ANRI, USDA, Beltsville, MD 20705 USA.
[Korobova, Olga; Schischkova, Nina; Kiseleva, Natalia; Kopylov, Paul; Pryamchuk, Sergey; Abaev, Igor] State Res Ctr Appl Microbiol & Biotechnol, Obolensk 142279, Moscow Region, Russia.
RP Donovan, DM (reprint author), ARS, Anim Biosci & Biotechnol Lab, ANRI, USDA, Bldg 230,Room 104,BARC E,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM david.donovan@ars.usda.gov
FU National Institutes of Health [1RO1AI075077-01A1]; National Research
Initiative [2007-35204-18395]; US State Dept funds
FX This work was supported in part by National Institutes of Health grant
1RO1AI075077-01A1 (DMD); National Research Initiative grant
2007-35204-18395 (DMD) and US State Dept funds supporting a US-Pakistani
(DMD) and US-Russian collaboration (IA, DMD). The funding sources had no
role in study design; in the collection, analysis and interpretation of
data; in the writing of the report; or in the decision to submit the
article for publication. The U.S. Department of Agriculture (USDA)
prohibits discrimination in all its programs and activities on the basis
of race, color, national origin, age, disability, and where applicable,
sex, marital status, familial status, parental status, religion, sexual
orientation, genetic information, political beliefs, reprisal, or
because all or part of an individual's income is derived from any public
assistance program. USDA is an equal opportunity provider and employer.
NR 69
TC 10
Z9 11
U1 0
U2 30
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-1656
J9 J BIOTECHNOL
JI J. Biotechnol.
PD DEC 31
PY 2012
VL 162
IS 2-3
BP 289
EP 298
DI 10.1016/j.jbiotec.2012.09.010
PG 10
WC Biotechnology & Applied Microbiology
SC Biotechnology & Applied Microbiology
GA 044RW
UT WOS:000311642000015
PM 23026556
ER
PT J
AU Sander, HA
Haight, RG
AF Sander, Heather A.
Haight, Robert G.
TI Estimating the economic value of cultural ecosystem services in an
urbanizing area using hedonic pricing
SO JOURNAL OF ENVIRONMENTAL MANAGEMENT
LA English
DT Article
DE Ecosystem services; Economic valuation; Hedonic pricing; Spatial
econometrics
ID RESIDENTIAL PROPERTY-VALUES; OPEN SPACE; GREEN SPACE; LAND-USE;
UNITED-STATES; ENVIRONMENTAL-QUALITY; CONTINGENT-VALUATION; LANDSCAPE
AMENITIES; HOUSE PRICES; FOREST
AB A need exists to increase both knowledge and recognition of the values associated with ecosystem services and amenities. This article explores the use of hedonic pricing as a tool for eliciting these values. We take a case study approach, valuing several services provided by ecosystems, namely aesthetic quality (views), access to outdoor recreation, and the benefits provided by tree cover in Dakota County, Minnesota, USA. Our results indicate that these services are valued by local residents and that hedonic pricing can be used to elicit at least a portion of this value. We find that many aspects of the aesthetic environment significantly impact home sale prices. Total view area as well as the areas of some landcover types (water and lawn) in views positively influenced home sale prices while views of impervious surfaces generally negatively influenced home sale price. Access to outdoor recreation areas significantly and positively influenced home sale prices as did tree cover in the neighborhood surrounding a home. These results illustrate the ability of hedonic pricing to identify partial values for ecosystem services and amenities in a manner that is highly relevant to local and regional planning. These values could be used to increase policy-maker and public awareness of ecosystem services and could improve their consideration in planning and policy decisions. (c) 2012 Elsevier Ltd. All rights reserved.
C1 [Sander, Heather A.] Univ Minnesota, Conservat Biol Grad Program, St Paul, MN 55108 USA.
[Haight, Robert G.] US Forest Serv, No Res Stn, St Paul, MN 55108 USA.
RP Sander, HA (reprint author), Univ Iowa, Dept Geog, Iowa City, IA 52246 USA.
EM heather-a-sander@uiowa.edu; rhaight@fs.fed.us
NR 113
TC 26
Z9 27
U1 12
U2 145
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0301-4797
EI 1095-8630
J9 J ENVIRON MANAGE
JI J. Environ. Manage.
PD DEC 30
PY 2012
VL 113
BP 194
EP 205
DI 10.1016/j.jenvman.2012.08.031
PG 12
WC Environmental Sciences
SC Environmental Sciences & Ecology
GA 065MQ
UT WOS:000313153000021
PM 23025985
ER
PT J
AU Pan, XH
Zhang, QJ
Yan, WG
Jia, M
Jackson, A
Li, XB
Jia, LM
Huang, BH
Xu, PZ
Correa-Victoria, F
Li, SG
AF Pan, Xuhao
Zhang, Qijun
Yan, Wengui
Jia, Melissa
Jackson, Aaron
Li, Xiaobai
Jia, Limeng
Huang, Bihu
Xu, Peizhou
Correa-Victoria, Fernando
Li, Shigui
TI Development of Genetic Markers Linked to Straighthead Resistance through
Fine Mapping in Rice (Oryza sativa L.)
SO PLOS ONE
LA English
DT Article
ID WATER MANAGEMENT; CULTIVARS; DISORDER; DIVERSITY; GENOTYPE; MINERALS;
MAIZE; LOCUS; QTL
AB Straighthead, a physiological disorder characterized by sterile florets and distorted spikelets, causes significant yield losses in rice, and occurs in many countries. The current control method of draining paddies early in the season stresses plants, is costly, and wastes water. Development of resistant cultivar is regarded as the most efficient way for its control. We mapped a QTL for straighthead resistance using two recombinant inbred line (RIL) F-9 populations that were phenotyped over two years using monosodium methanearsonate (MSMA) to induce the symptoms. One population of 170 RILs was genotyped with 136 SSRs and the other population of 91 RILs was genotyped with 159 SSRs. A major QTL qSH-8 was identified in an overlapping region in both populations, and explained 46% of total variation in one and 67% in another population for straighthead resistance. qSH-8 was fine mapped from 1.0 Mbp to 340 kb using 7 SSR markers and further mapped to 290 kb in a population between RM22573 and InDel 27 using 4 InDel markers. SSR AP3858-1 and InDel 11 were within the fine mapped region, and co-segregated with straighthead resistance in both RIL populations, as well as in a collection of diverse global accessions. These results demonstrate that AP3858-1 and InDel 11 can be used for marker-assisted selection (MAS) for straighthead resistant cultivars, which is especially important because there is no effective way to directly evaluate straighthead resistance.
C1 [Pan, Xuhao; Yan, Wengui; Jia, Melissa; Jackson, Aaron; Li, Shigui] ARS, USDA, Dale Bumpers Natl Rice Res Ctr, Stuttgart, AR USA.
[Pan, Xuhao; Xu, Peizhou] Sichuan Agr Univ, Rice Res Inst, Chengdu, Peoples R China.
[Pan, Xuhao] Univ Arkansas, Rice Res & Extens Ctr, Stuttgart, AR USA.
[Zhang, Qijun] Jiangsu Acad Agr Sci, Inst Food Crops, Nanjing, Jiangsu, Peoples R China.
[Li, Xiaobai] Zhejiang Univ, Inst Nucl Agr Sci, State Key Lab Rice Biol, Hangzhou 310003, Zhejiang, Peoples R China.
[Jia, Limeng] Zhejiang Acad Agr Sci, Inst Virol & Biotechnol, Hangzhou, Zhejiang, Peoples R China.
[Huang, Bihu] Univ Arkansas, Pine Bluff, AR USA.
[Correa-Victoria, Fernando] RiceTec Inc, Alvin, TX USA.
RP Yan, WG (reprint author), ARS, USDA, Dale Bumpers Natl Rice Res Ctr, Stuttgart, AR USA.
EM Wengui.Yan@ars.usda.gov; lishigui_sc@263.net
FU USDA; National Natural Science Foundation of China [31025017, 30971763];
RiceTec, Inc.
FX This work was supported by USDA in-house funds and partially by a grant
from the National Natural Science Foundation of China (No. 31025017 and
30971763) and by RiceTec, Inc. The funder had no role in study design,
data collection and analysis, decision to publish, or preparation of the
manuscript.
NR 44
TC 3
Z9 3
U1 2
U2 24
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 28
PY 2012
VL 7
IS 12
AR e52540
DI 10.1371/journal.pone.0052540
PG 11
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 064DQ
UT WOS:000313051500034
PM 23285082
ER
PT J
AU Kwon, H
Lehotay, SJ
Geis-Asteggiante, L
AF Kwon, Hyeyoung
Lehotay, Steven J.
Geis-Asteggiante, Lucia
TI Variability of matrix effects in liquid and gas chromatography-mass
spectrometry analysis of pesticide residues after QuEChERS sample
preparation of different food crops
SO JOURNAL OF CHROMATOGRAPHY A
LA English
DT Article
DE Matrix effects; LC-MS/MS; Low-pressure GC-MS; QuEChERS; Pesticide
residue analysis; Food crops
ID ELECTROSPRAY-IONIZATION; RESPONSE ENHANCEMENT; POSTCOLUMN INFUSION;
VEGETABLES; FRUITS; PROTECTANTS; CALIBRATION; COMPENSATION; VALIDATION;
EXTRACTION
AB Gas and liquid chromatography (GC and LC) coupled to mass spectrometry (MS) serve as the most powerful analytical tools commonly used to monitor pesticide residues in food, among other applications. However, both GC-MS and LC-MS are susceptible to matrix effects which can adversely affect quantification depending on the analyte, matrix, sample preparation, instrumentation, and operating conditions. Among the approaches that reduce matrix effects, the most common in pesticide residue applications is matrix-matched calibration because it is relatively inexpensive and simple. Also, it has been shown to work well during method validation when fortified samples are exactly matched with samples used for calibration. However, the quality of matrix-matched results in real-world analyses depends on the consistency of matrix effects among diverse samples. In this study, the variability of matrix effects was measured for 38 representative pesticides in 20 samples each (including different varieties) of rice, orange. apple, and spinach extracted using the "quick, easy, cheap, effective, rugged, and safe" (QuEChERS) method for analysis by LC-MS/MS and low-pressure GC-MS. Using LC-MS/MS, only oranges gave >20% matrix effects for a few pesticides. GC-MS exhibited larger matrix effects, but as in LC-MS/MS, the differences were reasonably consistent among the 20 samples tested. Main conclusions of this study are that for the conditions utilized: (1) matrix-matching was not needed for most pesticides in the simpler food matrices: and (2) for the more complex orange matrix, acceptably accurate quantitative results were achieved by using matrix-matching even with a different sample of the same type. However, full confidence cannot be extended to matrix-matched results, and for consequential applications such as regulatory enforcement, confirmatory analyses using alternate quantitative determinations should also be conducted. Published by Elsevier B.V.
C1 [Kwon, Hyeyoung; Lehotay, Steven J.; Geis-Asteggiante, Lucia] ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
[Kwon, Hyeyoung] Natl Acad Agr Sci, Rural Dev Adm, Suwon 441707, South Korea.
[Geis-Asteggiante, Lucia] UdelaR, Fac Quim, DQO, Catedra Farmacognosia & Prod Nat, Montevideo 12800, Uruguay.
RP Lehotay, SJ (reprint author), ARS, USDA, Eastern Reg Res Ctr, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM steven.lehotay@ars.usda.gov
FU U.S.-Israel Binational Agricultural Research and Development Fund
[US-4273-09]; Rural Development Administration, Republic of Korea
FX This research was funded by the U.S.-Israel Binational Agricultural
Research and Development Fund number US-4273-09 and a training program
of the Rural Development Administration, Republic of Korea.
NR 42
TC 62
Z9 70
U1 2
U2 122
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0021-9673
J9 J CHROMATOGR A
JI J. Chromatogr. A
PD DEC 28
PY 2012
VL 1270
BP 235
EP 245
DI 10.1016/j.chroma.2012.10.059
PG 11
WC Biochemical Research Methods; Chemistry, Analytical
SC Biochemistry & Molecular Biology; Chemistry
GA 057OM
UT WOS:000312572900028
PM 23182936
ER
PT J
AU Prelack, K
Dwyer, J
Ziegler, P
Kehayias, JJ
AF Prelack, Kathy
Dwyer, Johanna
Ziegler, Paula
Kehayias, Joseph J.
TI Bone mineral density in elite adolescent female figure skaters
SO JOURNAL OF THE INTERNATIONAL SOCIETY OF SPORTS NUTRITION
LA English
DT Article
ID BODY-COMPOSITION; ATHLETE TRIAD; YOUNG-WOMEN; ENERGY; OSTEOPOROSIS;
DIAGNOSIS; CHILDREN; WEIGHT; SPORTS; MASS
AB Elite adolescent figure skaters must accommodate both the physical demands of competitive training and the accelerated rate of bone growth that is associated with adolescence, in this sport that emphasizes leanness. Although, these athletes apparently have sufficient osteogenic stimuli to mitigate the effects of possible low energy availability on bone health, the extent or magnitude of bone accrual also varies with training effects, which differ among skater disciplines.
Purpose: We studied differences in total and regional bone mineral density in 36 nationally ranked skaters among 3 skater disciplines: single, pairs, and dancers.
Methods: Bone mineral density (BMD) of the total body and its regions was measured by dual energy x-ray absorptiometry (DXA). Values for total body, spine, pelvis and leg were entered into a statistical mixed regression model to identify the effect of skater discipline on bone mineralization while controlling for energy, vitamin D, and calcium intake.
Results: The skaters had a mean body mass index of 19.8 +/- 2.1 and % fat mass of 19.2 +/- 5.8. After controlling for dietary intakes of energy, calcium, and vitamin D, there was a significant relationship between skater discipline and BMD (p = 0.002), with single skaters having greater BMD in the total body, legs, and pelvis than ice dancers (p < 0.001). Pair skaters had greater pelvic BMD than ice dancers (p = 0.001).
Conclusions: Single and pair skaters have greater BMD than ice dancers. The osteogenic effect of physical training is most apparent in single skaters, particularly in the bone loading sites of the leg and pelvis.
C1 [Prelack, Kathy] Hosp Children, Shriners, Boston, MA 02114 USA.
[Prelack, Kathy] Massachusetts Gen Hosp, Dept Surg, Boston, MA 02114 USA.
[Prelack, Kathy] Tufts Univ, Friedman Sch Nutr Sci & Policy, Boston, MA 02111 USA.
[Dwyer, Johanna] Tufts Med Ctr, Frances Stern Nutr Ctr, Boston, MA 02111 USA.
[Dwyer, Johanna] Tufts Univ, Jean Mayer Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Dwyer, Johanna] Tufts Univ, Sch Med, Boston, MA 02111 USA.
[Ziegler, Paula] Coll St Elizabeth, Morristown, NJ 07960 USA.
[Kehayias, Joseph J.] Tufts Univ, Body Composit Lab, USDA, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
RP Prelack, K (reprint author), Hosp Children, Shriners, 51 Blossom St, Boston, MA 02114 USA.
EM kprelack@shrinenet.org
OI Dwyer, Johanna/0000-0002-0783-1769
FU U.S. Department of Agriculture Cooperative State Research Education
Extension [2006-35200-17259]; USDA Agricultural Research Service [58
1950-7-707]; Gerber Products Company
FX This work was supported in part by funds provided by the U.S. Department
of Agriculture Cooperative State Research Education & Extension with
grant #2006-35200-17259 and USDA Agricultural Research Service under
agreement No 58 1950-7-707. Any opinions, findings, conclusions or
recommendations expressed are those of the authors and do not reflect
the view of the US Department of Agriculture. This study was also
supported by a non-restricted grant to Tufts University from the Gerber
Products Company.
NR 25
TC 2
Z9 2
U1 4
U2 26
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1550-2783
J9 J INT SOC SPORT NUTR
JI J. Int. Soc. Sport Nutr.
PD DEC 27
PY 2012
VL 9
AR 57
DI 10.1186/1550-2783-9-57
PG 6
WC Nutrition & Dietetics; Sport Sciences
SC Nutrition & Dietetics; Sport Sciences
GA 072BQ
UT WOS:000313643700001
PM 23270306
ER
PT J
AU Tucker, JM
Schwartz, MK
Truex, RL
Pilgrim, KL
Allendorf, FW
AF Tucker, Jody M.
Schwartz, Michael K.
Truex, Richard L.
Pilgrim, Kristine L.
Allendorf, Fred W.
TI Historical and Contemporary DNA Indicate Fisher Decline and Isolation
Occurred Prior to the European Settlement of California
SO PLOS ONE
LA English
DT Article
ID EFFECTIVE POPULATION-SIZE; ALLELE FREQUENCY DATA; MARTES-PENNANTI;
GENETIC DIVERSITY; MICROSATELLITE LOCI; ANCIENT DNA; LANDSCAPE GENETICS;
MUSEUM SPECIMENS; RANGE; CONSERVATION
AB Establishing if species contractions were the result of natural phenomena or human induced landscape changes is essential for managing natural populations. Fishers (Martes pennanti) in California occur in two geographically and genetically isolated populations in the northwestern mountains and southern Sierra Nevada. Their isolation is hypothesized to have resulted from a decline in abundance and distribution associated with European settlement in the 1800s. However, there is little evidence to establish that fisher occupied the area between the two extant populations at that time. We analyzed 10 microsatelliteloci from 275 contemporary and 21 historical fisher samples (1880-1920) to evaluate the demographic history of fisher in California. We did not find any evidence of a recent (post-European) bottleneck in the northwestern population. In the southern Sierra Nevada, genetic subdivision within the population strongly influenced bottleneck tests. After accounting for genetic subdivision, we found a bottleneck signal only in the northern and central portions of the southern Sierra Nevada, indicating that the southernmost tip of these mountains may have acted as a refugium for fisher during the anthropogenic changes of the late 19th and early 20th centuries. Using a coalescent-based Bayesian analysis, we detected a 90% decline in effective population size and dated the time of decline to over a thousand years ago. We hypothesize that fisher distribution in California contracted to the two current population areas pre-European settlement, and that portions of the southern Sierra Nevada subsequently experienced another more recent bottleneck post-European settlement.
C1 [Tucker, Jody M.] US Forest Serv, USDA, Sequoia Natl Forest, Porterville, CA 93257 USA.
[Tucker, Jody M.; Schwartz, Michael K.; Pilgrim, Kristine L.] ARS, USDA, Rocky Mt Res Stn, Missoula, MT USA.
[Tucker, Jody M.] Univ Montana, Wildlife Biol Program, Missoula, MT 59812 USA.
[Truex, Richard L.] US Forest Serv, USDA, Rocky Mt Reg, Golden, CO USA.
[Allendorf, Fred W.] Univ Montana, Div Biol Sci, Missoula, MT 59812 USA.
RP Tucker, JM (reprint author), US Forest Serv, USDA, Sequoia Natl Forest, Porterville, CA 93257 USA.
EM jtucker@fs.fed.us
RI Schwartz, Michael/C-3184-2014
OI Schwartz, Michael/0000-0003-3521-3367
FU U.S. Forest Service Pacific Southwest Region; Rocky Mountain Research
Station; University of Montana
FX This work was funded by the U.S. Forest Service Pacific Southwest
Region, Rocky Mountain Research Station and the University of Montana.
Additional funding was provided by the National Fish and Wildlife
Foundation. The funders had no role in study design, data collection and
analysis, decision to publish, or preparation of the manuscript.
NR 115
TC 12
Z9 12
U1 5
U2 53
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 26
PY 2012
VL 7
IS 12
AR e52803
DI 10.1371/journal.pone.0052803
PG 13
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 071TV
UT WOS:000313618800150
PM 23300783
ER
PT J
AU Naiman, RJ
Alldredge, JR
Beauchamp, DA
Bisson, PA
Congleton, J
Henny, CJ
Huntly, N
Lamberson, R
Levings, C
Merrill, EN
Pearcy, WG
Rieman, BE
Ruggerone, GT
Scarnecchia, D
Smouse, PE
Wood, CC
AF Naiman, Robert J.
Alldredge, J. Richard
Beauchamp, David A.
Bisson, Peter A.
Congleton, James
Henny, Charles J.
Huntly, Nancy
Lamberson, Roland
Levings, Colin
Merrill, Erik N.
Pearcy, William G.
Rieman, Bruce E.
Ruggerone, Gregory T.
Scarnecchia, Dennis
Smouse, Peter E.
Wood, Chris C.
TI Developing a broader scientific foundation for river restoration:
Columbia River food webs
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA
LA English
DT Article
ID STEELHEAD ONCORHYNCHUS-MYKISS; JUVENILE SALMONIDS; CHINOOK SALMON;
PACIFIC SALMON; MANAGEMENT; ECOSYSTEM; CONSERVATION; POPULATIONS;
PREDATION; ABUNDANCE
AB Well-functioning food webs are fundamental for sustaining rivers as ecosystems and maintaining associated aquatic and terrestrial communities. The current emphasis on restoring habitat structure-without explicitly considering food webs-has been less successful than hoped in terms of enhancing the status of targeted species and often overlooks important constraints on ecologically effective restoration. We identify three priority food web-related issues that potentially impede successful river restoration: uncertainty about habitat carrying capacity, proliferation of chemicals and contaminants, and emergence of hybrid food webs containing a mixture of native and invasive species. Additionally, there is the need to place these food web considerations in a broad temporal and spatial framework by understanding the consequences of altered nutrient, organic matter (energy), water, and thermal sources and flows, reconnecting critical habitats and their food webs, and restoring for changing environments. As an illustration, we discuss how the Columbia River Basin, site of one of the largest aquatic/riparian restoration programs in the United States, would benefit from implementing a food web perspective. A food web perspective for the Columbia River would complement ongoing approaches and enhance the ability to meet the vision and legal obligations of the US Endangered Species Act, the Northwest Power Act (Fish and Wildlife Program), and federal treaties with Northwest Indian Tribes while meeting fundamental needs for improved river management.
C1 [Naiman, Robert J.; Beauchamp, David A.] Univ Washington, Sch Aquat & Fishery Sci, Washington Cooperat Fish & Wildlife Res Unit, US Geol Survey, Seattle, WA 98195 USA.
[Naiman, Robert J.] Univ Western Australia, Ctr Excellence Nat Resource Management, Albany, WA 6330, Australia.
[Alldredge, J. Richard] Washington State Univ, Dept Stat, Pullman, WA 99164 USA.
[Bisson, Peter A.] US Forest Serv, USDA, Pacific NW Res Stn, Olympia, WA 98512 USA.
[Congleton, James] Univ Idaho, Idaho Cooperat Fish & Wildlife Res Unit, US Geol Survey, Moscow, ID 83843 USA.
[Henny, Charles J.] US Geol Survey, Forest & Rangeland Ecosyst Sci Ctr, Corvallis, OR 97331 USA.
[Huntly, Nancy] Utah State Univ, Ctr Ecol, Logan, UT 84322 USA.
[Huntly, Nancy] Utah State Univ, Dept Biol, Logan, UT 84322 USA.
[Lamberson, Roland] Humboldt State Univ, Dept Math, Arcata, CA 95521 USA.
[Levings, Colin] Fisheries & Oceans Canada, Ctr Aquaculture & Environm Res, W Vancouver, BC V7V 1N6, Canada.
[Levings, Colin] Univ British Columbia, Inst Resources Environm & Sustainabil, Vancouver, BC V6T 1Z4, Canada.
[Merrill, Erik N.] NW Power & Conservat Council, Portland, OR 97204 USA.
[Pearcy, William G.] Oregon State Univ, Coll Ocean & Atmospher Sci, Corvallis, OR 97331 USA.
[Rieman, Bruce E.] US Forest Serv, USDA, Rocky Mt Res Stn, Seeley Lake, MT 59868 USA.
[Ruggerone, Gregory T.] Nat Resources Consultants, Seattle, WA 98199 USA.
[Scarnecchia, Dennis] Univ Idaho, Dept Fish & Wildlife Sci, Moscow, ID 83844 USA.
[Smouse, Peter E.] Rutgers State Univ, Dept Ecol Evolut & Nat Resources, New Brunswick, NJ 08901 USA.
[Wood, Chris C.] Fisheries & Oceans Canada, Pacific Biol Stn, Nanaimo, BC V9T 6N7, Canada.
RP Naiman, RJ (reprint author), Univ Washington, Sch Aquat & Fishery Sci, Washington Cooperat Fish & Wildlife Res Unit, US Geol Survey, Seattle, WA 98195 USA.
EM naiman@uw.edu
OI Huntly, Nancy/0000-0001-6051-6365
NR 74
TC 44
Z9 44
U1 8
U2 148
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 26
PY 2012
VL 109
IS 52
BP 21201
EP 21207
DI 10.1073/pnas.1213408109
PG 7
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 071WR
UT WOS:000313627700024
PM 23197837
ER
PT J
AU Nsimba, RY
West, N
Boateng, AA
AF Nsimba, Robert Y.
West, Nathan
Boateng, Akwasi A.
TI Structure and Radical Scavenging Activity Relationships of Pyrolytic
Lignins
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE pyrolytic lignin; acetylation; trifluoromethylation; functional groups;
free radical scavenging activity
ID ANTIOXIDANT ACTIVITY; PLANT-EXTRACTS; BIO-OIL
AB This work deals with antioxidant properties of pyrolytic lignins against two free radicals, 1,1-diphenyl-2-picrylhydrazyl and 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonic acid). Pyrolytic lignins produced by the thermal pyrolysis of the Etek lignin were extracted from the liquid pyrolysis product and fractionated using solvents of different polarities. The main functional groups linked to the lignin skeleton have been characterized by H-1 NMR and F-19 NMR upon acetylation and trifluoromethylation, respectively. Their radical scavenging activity against targeted free radicals was evaluated in vitro, and it was correlated to the content of studied functional groups. In contrast to the extracted Etek lignin, thermal pyrolysis produces lignin adducts that have higher scavenging efficacy than the nonthermally altered lignin and even higher than that of quercetin, a well-known phenolic antioxidant. The phenyl hydroxyl and methoxyl groups appear to be the main lignin structural factors contributing to the overall scavenging properties against the DPPH and ABTS free radicals. Also, these results show that there is no correlation between the content of aliphatic hydroxyl and carbonyl groups and the antioxidant activity.
C1 [Nsimba, Robert Y.; Boateng, Akwasi A.] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
[West, Nathan] Univ Sci, Dept Chem & Biochem, Philadelphia, PA 19104 USA.
RP Boateng, AA (reprint author), ARS, Eastern Reg Res Ctr, USDA, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM akwasi.boateng@ars.usda.gov
RI West, Nathan/C-5596-2014
OI West, Nathan/0000-0002-0657-3892
FU U.S. Department of Agriculture [58-1935-2-278]
FX N.W. acknowledges funding support from U.S. Department of Agriculture
Specific Cooperative Agreement 58-1935-2-278. Mention of trade names or
commercial products in this publication is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the U.S. Department of Agriculture.
NR 20
TC 8
Z9 8
U1 5
U2 66
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD DEC 26
PY 2012
VL 60
IS 51
BP 12525
EP 12530
DI 10.1021/jf3037787
PG 6
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA 065MS
UT WOS:000313153200014
PM 23199120
ER
PT J
AU Corella, D
Ortega-Azorin, C
Sorli, JV
Covas, MI
Carrasco, P
Salas-Salvado, J
Martinez-Gonzalez, MA
Aros, F
Lapetra, J
Serra-Majem, L
Lamuela-Raventos, R
Gomez-Gracia, E
Fiol, M
Pinto, X
Ros, E
Marti, A
Coltell, O
Ordovas, JM
Estruch, R
AF Corella, Dolores
Ortega-Azorin, Carolina
Sorli, Jose V.
Isabel Covas, M.
Carrasco, Paula
Salas-Salvado, Jordi
Angel Martinez-Gonzalez, Miguel
Aros, Fernando
Lapetra, Jose
Serra-Majem, Lluis
Lamuela-Raventos, Rosa
Gomez-Gracia, Enrique
Fiol, Miquel
Pinto, Xavier
Ros, Emilio
Marti, Amelia
Coltell, Oscar
Ordovas, Jose M.
Estruch, Ramon
TI Statistical and Biological Gene-Lifestyle Interactions of MC4R and FTO
with Diet and Physical Activity on Obesity: New Effects on Alcohol
Consumption
SO PLOS ONE
LA English
DT Article
ID BODY-MASS INDEX; COMMON VARIANTS; FAT MASS; ETHANOL INTAKE;
ENERGY-INTAKE; FOOD-INTAKE; MELANOCORTIN-4 RECEPTOR; RS9939609
POLYMORPHISM; ACTIVITY QUESTIONNAIRE; AMERICAN YOUTH
AB Background: Fat mass and obesity (FTO) and melanocortin-4 receptor (MC4R) and are relevant genes associated with obesity. This could be through food intake, but results are contradictory. Modulation by diet or other lifestyle factors is also not well understood.
Objective: To investigate whether MC4R and FTO associations with body-weight are modulated by diet and physical activity (PA), and to study their association with alcohol and food intake.
Methods: Adherence to Mediterranean diet (AdMedDiet) and physical activity (PA) were assessed by validated questionnaires in 7,052 high cardiovascular risk subjects. MC4R rs17782313 and FTO rs9939609 were determined. Independent and joint associations (aggregate genetic score) as well as statistical and biological gene-lifestyle interactions were analyzed.
Results: FTO rs9939609 was associated with higher bodymass index (BMI), waist circumference (WC) and obesity (P < 0.05 for all). A similar, but not significant trend was found for MC4R rs17782313. Their additive effects (aggregate score) were significant and we observed a 7% per-allele increase of being obese (OR = 1.07; 95% CI 1.01-1.13). We found relevant statistical interactions (P, 0.05) with PA. So, in active individuals, the associations with higher BMI, WC or obesity were not detected. A biological (non-statistical) interaction between AdMedDiet and rs9939609 and the aggregate score was found. Greater AdMedDiet in individuals carrying 4 or 3-risk alleles counterbalanced their genetic predisposition, exhibiting similar BMI (P = 0.502) than individuals with no risk alleles and lower AdMedDiet. They also had lower BMI (P = 0.021) than their counterparts with low AdMedDiet. We did not find any consistent association with energy or macronutrients, but found a novel association between these polymorphisms and lower alcohol consumption in variant-allele carriers (B+/-SE: -0.57+/-0.16 g/d per-score-allele; P = 0.001).
Conclusion: Statistical and biological interactions with PA and diet modulate the effects of FTO and MC4R polymorphisms on obesity. The novel association with alcohol consumption seems independent of their effects on BMI.
C1 [Corella, Dolores; Ortega-Azorin, Carolina; Sorli, Jose V.; Carrasco, Paula; Estruch, Ramon] Univ Valencia, Sch Med, Dept Prevent Med & Publ Hlth, Valencia, Spain.
[Corella, Dolores; Ortega-Azorin, Carolina; Sorli, Jose V.; Isabel Covas, M.; Carrasco, Paula; Salas-Salvado, Jordi; Lapetra, Jose; Fiol, Miquel; Ros, Emilio; Coltell, Oscar] Inst Salud Carlos III, CIBER Fisiopatol Obesidad & Nutr, Madrid, Spain.
[Isabel Covas, M.] Municipal Inst Med Res IMIM, Cardiovasc Epidemiol Unit, Barcelona, Spain.
[Salas-Salvado, Jordi] Univ Rovira & Virgili, IISPV, Fac Med, Human Nutr Unit, E-43201 Reus, Spain.
[Angel Martinez-Gonzalez, Miguel] Univ Navarra, Sch Clin Med, Dept Prevent Med & Publ Hlth, E-31080 Pamplona, Spain.
[Aros, Fernando] Hosp Txagorritxu, Dept Cardiol, Vitoria, Spain.
[Lapetra, Jose] San Pablo Hlth Ctr, Primary Care Div Sevilla, Dept Family Med, Seville, Spain.
[Serra-Majem, Lluis] Univ Las Palmas Gran Canaria, Dept Clin Sci, Las Palmas Gran Canaria, Spain.
[Lamuela-Raventos, Rosa] Univ Barcelona, Sch Pharm, Dept Nutr & Food Sci, Barcelona, Spain.
[Gomez-Gracia, Enrique] Univ Malaga, Sch Med, Dept Epidemiol, Malaga, Spain.
[Fiol, Miquel] Hosp Son Dureta, Univ Inst Hlth Sci Invest, Palma De Mallorca, Spain.
[Pinto, Xavier] Hosp Llobregat, Hosp Univ Bellvitge, Lipids & Vasc Risk Unit, Barcelona, Spain.
[Ros, Emilio] Hosp Clin Barcelona, Inst Invest Biomed August Pi Sunyer IDIBAPS, Endocrinol & Nutr Serv, Lipid Clin, Barcelona, Spain.
[Marti, Amelia] Univ Navarra, Dept Nutr Food Sci Physiol & Toxicol, E-31080 Pamplona, Spain.
[Coltell, Oscar] Univ Jaume 1, Dept Comp Languages & Syst, Castellon de La Plana, Spain.
[Ordovas, Jose M.] Tufts Univ, JM USDA Human Nutr Res Ctr Aging, Nutr & Genom Lab, Boston, MA 02111 USA.
[Ordovas, Jose M.] CNIC, Dept Cardiovasc Epidemiol & Populat Genet, Madrid, Spain.
[Ordovas, Jose M.] IMDEA Alimentac, Madrid, Spain.
[Estruch, Ramon] IDIBAPS, Hosp Clin, Dept Internal Med, Barcelona, Spain.
RP Corella, D (reprint author), Univ Valencia, Sch Med, Dept Prevent Med & Publ Hlth, Valencia, Spain.
EM dolores.corella@uv.es
RI Lapetra, Jose/F-2552-2015; Lamuela Raventos, Rosa/F-3986-2016; Fiol,
Miguel/F-6793-2016; IBIS, ATENCION PRIMARIA/I-3524-2016; Salas-Salvado,
Jordi/C-7229-2017;
OI Lamuela Raventos, Rosa/0000-0002-1287-4560; Salas-Salvado,
Jordi/0000-0003-2700-7459; Martinez-Gonzalez, Miguel
A./0000-0002-3917-9808; Marti, Amelia/0000-0001-9832-7981
FU Official funding agency for Biomedical Research of the Spanish
Government; Instituto de Salud Carlos III (ISCIII); Fondo Europeo de
Desarrollo Regional (FEDER) [RTIC G03/140, CIBERobn, RD 06/0045,
PI04-2239, PI 05/2584, CP06/00100, PI07/0240, PI07/1138, PI07/0954, PI
07/0473, PI10/01407, PI11/02505 PI11/01647 CNIC-06,
AGL2010-22319-C03-03]; Generalitat Valenciana [AP-042/11, BEST11-263]
FX The Official funding agency for Biomedical Research of the Spanish
Government, Instituto de Salud Carlos III (ISCIII) and Fondo Europeo de
Desarrollo Regional (FEDER), provided the grants for his study: RTIC
G03/140, CIBERobn, RD 06/0045, PI04-2239, PI 05/2584, CP06/00100,
PI07/0240, PI07/1138, PI07/0954, PI 07/0473, PI10/01407, PI11/02505
PI11/01647 CNIC-06 and AGL2010-22319-C03-03. The Generalitat Valenciana
provided grants AP-042/11 and BEST11-263. The funders had no role in
study design, data collection and analysis, decision to publish, or
preparation of the manuscript.
NR 65
TC 22
Z9 23
U1 0
U2 33
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 21
PY 2012
VL 7
IS 12
AR e52344
DI 10.1371/journal.pone.0052344
PG 14
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 065OW
UT WOS:000313158800050
PM 23284998
ER
PT J
AU Del Coco, VF
Cordoba, MA
Sidoti, A
Santin, M
Drut, R
Basualdo, JA
AF Del Coco, Valeria F.
Cordoba, Maria A.
Sidoti, Alicia
Santin, Monica
Drut, Ricardo
Basualdo, Juan A.
TI Experimental infection with Cryptosporidium parvum IIaA21G1R1 subtype in
immunosuppressed mice
SO VETERINARY PARASITOLOGY
LA English
DT Article
DE Cryptosporidium parvum; Apoptosis; Immunosuppression; Murine model
ID CELL RENEWAL; DAIRY-CATTLE; MOUSE MODEL; WEIGHT-LOSS; APOPTOSIS;
OOCYSTS; DEFICIENT; RESPONSES; AGE
AB Cryptosporidium parvum subtype IIaA21G1R1 oocysts were used to infect dexamethasone immunosuppressed N: NIH Swiss mice. This is the first Cryptosporidium mouse model in which the relationship between infection and apoptosis has been histologically studied at each portion of the gut in order to observe this dynamic in chronic cryptosporidiosis. Histology showed developmental stages in the duodenum, proximal and distal jejunum, ileum, cecum and colon, with the small intestine remaining infected until day 35 post infection. At proximal jejunum an inverse correlation between infection and apoptosis was observed at days 28 and 35 p.i. Data suggests that jejunum could be an interesting place to carry out further studies on the dynamics of Cryptosporidium infection and apoptosis. Based on these findings, this mouse model was useful to evaluate clinical, parasitological and histological aspects of C. parvum subtype IIaA21G1R1 infection, and it will be an appropriate tool to investigate different aspects of Cryptosporidium infection. (C) 2012 Elsevier B.V. All rights reserved.
C1 [Del Coco, Valeria F.; Cordoba, Maria A.; Basualdo, Juan A.] Univ Nacl La Plata, Fac Ciencias Med, Catedra Microbiol & Parasitol, RA-1900 La Plata, Buenos Aires, Argentina.
[Del Coco, Valeria F.] Consejo Nacl Invest Cient & Tecn CONICET, La Plata, Buenos Aires, Argentina.
[Cordoba, Maria A.] Comis Invest Cient Prov Buenos Aires, RA-1900 La Plata, Buenos Aires, Argentina.
[Sidoti, Alicia; Drut, Ricardo] Univ Nacl La Plata, Fac Ciencias Med, Catedra Patol A, RA-1900 La Plata, Buenos Aires, Argentina.
[Santin, Monica] USDA ARS, Environm Microbial & Food Safety Lab, Anim & Nat Resources Inst, Beltsville, MD 20705 USA.
RP Cordoba, MA (reprint author), Univ Nacl La Plata, Fac Ciencias Med, Catedra Microbiol & Parasitol, RA-1900 La Plata, Buenos Aires, Argentina.
EM acordoba@aetos.med.unlp.edu.ar
OI Basualdo, Juan/0000-0001-9126-3719
FU Programa de Incentivos de la Universidad de La Plata
FX This project was financed by the Programa de Incentivos de la
Universidad de La Plata. The authors wish to thank to Dr. Ronald Fayer
for his critical reading of the manuscript, and also to Dr. Miguel
Risso, from the Comision de Investigaciones Cientificas de la Provincia
de Buenos Aires, for the statistical assessment.
NR 35
TC 3
Z9 4
U1 0
U2 7
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0304-4017
J9 VET PARASITOL
JI Vet. Parasitol.
PD DEC 21
PY 2012
VL 190
IS 3-4
BP 411
EP 417
DI 10.1016/j.vetpar.2012.06.033
PG 7
WC Parasitology; Veterinary Sciences
SC Parasitology; Veterinary Sciences
GA 055OD
UT WOS:000312425400013
PM 22818787
ER
PT J
AU Anderson, OD
Dong, LL
Huo, NX
Gu, YQ
AF Anderson, Olin D.
Dong, Lingli
Huo, Naxin
Gu, Yong Q.
TI A New Class of Wheat Gliadin Genes and Proteins
SO PLOS ONE
LA English
DT Article
ID DISULFIDE BONDS; FAMILY-STRUCTURE; GLUTEN PROTEINS; GAMMA-3 HORDEIN;
BARLEY; LOCATION; SEQUENCE; BREAD
AB The utility of mining DNA sequence data to understand the structure and expression of cereal prolamin genes is demonstrated by the identification of a new class of wheat prolamins. This previously unrecognized wheat prolamin class, given the name delta-gliadins, is the most direct ortholog of barley gamma 3-hordeins. Phylogenetic analysis shows that the orthologous delta-gliadins and gamma 3-hordeins form a distinct prolamin branch that existed separate from the gamma-gliadins and gamma-hordeins in an ancestral Triticeae prior to the branching of wheat and barley. The expressed delta-gliadins are encoded by a single gene in each of the hexaploid wheat genomes. This single delta-gliadin/gamma 3-hordein ortholog may be a general feature of the Triticeae tribe since examination of ESTs from three barley cultivars also confirms a single gamma 3-hordein gene. Analysis of ESTs and cDNAs shows that the genes are expressed in at least five hexaploid wheat cultivars in addition to diploids Triticum monococcum and Aegilops tauschii. The latter two sequences also allow assignment of the delta-gliadin genes to the A and D genomes, respectively, with the third sequence type assumed to be from the B genome. Two wheat cultivars for which there are sufficient ESTs show different patterns of expression, i.e., with cv Chinese Spring expressing the genes from the A and B genomes, while cv Recital has ESTs from the A and D genomes. Genomic sequences of Chinese Spring show that the D genome gene is inactivated by tandem premature stop codons. A fourth delta-gliadin sequence occurs in the D genome of both Chinese Spring and Ae. tauschii, but no ESTs match this sequence and limited genomic sequences indicates a pseudogene containing frame shifts and premature stop codons. Sequencing of BACs covering a 3 Mb region from Ae. tauschii locates the delta-gliadin gene to the complex Gli-1 plus Glu-3 region on chromosome 1.
C1 [Anderson, Olin D.; Dong, Lingli; Huo, Naxin; Gu, Yong Q.] ARS, Genom & Gene Discovery Res Unit, Western Reg Res Ctr, USDA, Albany, CA 94710 USA.
[Huo, Naxin] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[Dong, Lingli] Chinese Acad Sci, Key Lab Plant Cell & Chromosome Engn, Inst Genet & Dev Biol, Beijing, Peoples R China.
RP Anderson, OD (reprint author), ARS, Genom & Gene Discovery Res Unit, Western Reg Res Ctr, USDA, Albany, CA 94710 USA.
EM olin.anderson@ars.usda.gov
FU Agricultural Research Service, United States Department of Agriculture;
United States National Science Foundation [DBI-0701916, DBI-0822100]
FX This work was supported by the Agricultural Research Service, United
States Department of Agriculture and by United States National Science
Foundation grants DBI-0701916 and DBI-0822100. The funders had no role
in study design, data collection and analysis, decision to publish, or
preparation of the manuscript.
NR 23
TC 7
Z9 7
U1 3
U2 25
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 20
PY 2012
VL 7
IS 12
AR e52139
DI 10.1371/journal.pone.0052139
PG 9
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 060RA
UT WOS:000312794500098
PM 23284903
ER
PT J
AU Meihls, LN
Higdon, ML
Ellersieck, MR
Tabashnik, BE
Hibbard, BE
AF Meihls, Lisa N.
Higdon, Matthew L.
Ellersieck, Mark R.
Tabashnik, Bruce E.
Hibbard, Bruce E.
TI Greenhouse-Selected Resistance to Cry3Bb1-Producing Corn in Three
Western Corn Rootworm Populations
SO PLOS ONE
LA English
DT Article
ID VIRGIFERA-VIRGIFERA COLEOPTERA; FIELD-EVOLVED RESISTANCE; TO-PLANT
MOVEMENT; TRANSGENIC CORN; BACILLUS-THURINGIENSIS; INSECT RESISTANCE;
FITNESS COSTS; BT MAIZE; LABORATORY COLONIES; LARVAE COLEOPTERA
AB Transgenic corn producing the Bacillus thuringiensis (Bt) toxin Cry3Bb1 has been useful for controlling western corn rootworm, Diabrotica virgifera virgifera LeConte, one of the most economically important crop pests in the United States. However, rapid evolution of resistance by this beetle to Bt corn producing Cry3Bb1 has been reported previously from the laboratory, greenhouse, and field. Here we selected in the greenhouse for resistance to Cry3Bb1 corn in three colonies of WCR derived from Kansas, Minnesota, and Wisconsin, respectively. Three generations of rearing on Cry3Bb1 corn significantly increased larval survival on Cry3Bb1 corn, resulting in similar survival in the greenhouse for selected colonies on Cry3Bb1 corn and isoline corn that does not produce Bt toxin. After four to seven generations of rearing on Cry3Bb1 corn, survival in the field on Cry3Bb1 corn relative to isoline corn more than doubled for selected colonies (72%) compared with control colonies (33%). For both selected and control colonies, survival in the field was significantly lower on Cry3Bb1 corn than on isoline corn. On isoline corn, most fitness components were similar for selected colonies and control colonies. However, fecundity was significantly lower for selected colonies than control colonies, indicating a fitness cost associated with resistance. The rapid evolution of resistance by western corn rootworm to Bt corn reported here and previously underlines the importance of effective resistance management for this pest.
C1 [Meihls, Lisa N.] Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA.
[Higdon, Matthew L.; Hibbard, Bruce E.] ARS, USDA, Plant Genet Res Unit, Columbia, MO USA.
[Ellersieck, Mark R.] Univ Missouri Columbia, Dept Stat, Columbia, MO USA.
[Tabashnik, Bruce E.] Univ Arizona, Dept Entomol, Tucson, AZ 85721 USA.
RP Meihls, LN (reprint author), Cornell Univ, Boyce Thompson Inst Plant Res, Tower Rd, Ithaca, NY 14853 USA.
EM lnm2m9@mail.missouri.edu
FU Biotechnology Risk Assessment Program from USDA National Institute of
Food and Agriculture [2006-33522-17716]; USDA-ARS; University of
Missouri-Division of Plant Sciences
FX This research was supported, in part, by Biotechnology Risk Assessment
Program Grant no. 2006-33522-17716 from the USDA National Institute of
Food and Agriculture, USDA-ARS, and the University of Missouri-Division
of Plant Sciences. The funders had no role in study design, data
collection and analysis, decision to publish, or preparation of the
manuscript.
NR 59
TC 20
Z9 21
U1 0
U2 56
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 20
PY 2012
VL 7
IS 12
AR e51055
DI 10.1371/journal.pone.0051055
PG 11
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 060RA
UT WOS:000312794500020
PM 23284656
ER
PT J
AU Peace, C
Bassil, N
Main, D
Ficklin, S
Rosyara, UR
Stegmeir, T
Sebolt, A
Gilmore, B
Lawley, C
Mockler, TC
Bryant, DW
Wilhelm, L
Iezzoni, A
AF Peace, Cameron
Bassil, Nahla
Main, Dorrie
Ficklin, Stephen
Rosyara, Umesh R.
Stegmeir, Travis
Sebolt, Audrey
Gilmore, Barbara
Lawley, Cindy
Mockler, Todd C.
Bryant, Douglas W.
Wilhelm, Larry
Iezzoni, Amy
TI Development and Evaluation of a Genome-Wide 6K SNP Array for Diploid
Sweet Cherry and Tetraploid Sour Cherry
SO PLOS ONE
LA English
DT Article
ID PRUNUS-CERASUS L; ROSACEAE; AVIUM; INHERITANCE; RESISTANCE; HAPLOTYPE;
DATABASE; GENE; MAP; L.
AB High-throughput genome scans are important tools for genetic studies and breeding applications. Here, a 6K SNP array for use with the Illumina Infinium (R) system was developed for diploid sweet cherry (Prunus avium) and allotetraploid sour cherry (P. cerasus). This effort was led by RosBREED, a community initiative to enable marker-assisted breeding for rosaceous crops. Next-generation sequencing in diverse breeding germplasm provided 25 billion basepairs (Gb) of cherry DNA sequence from which were identified genome-wide SNPs for sweet cherry and for the two sour cherry subgenomes derived from sweet cherry (avium subgenome) and P. fruticosa (fruticosa subgenome). Anchoring to the peach genome sequence, recently released by the International Peach Genome Initiative, predicted relative physical locations of the 1.9 million putative SNPs detected, preliminarily filtered to 368,943 SNPs. Further filtering was guided by results of a 144-SNP subset examined with the Illumina GoldenGate (R) assay on 160 accessions. A 6K Infinium (R) II array was designed with SNPs evenly spaced genetically across the sweet and sour cherry genomes. SNPs were developed for each sour cherry subgenome by using minor allele frequency in the sour cherry detection panel to enrich for subgenome-specific SNPs followed by targeting to either subgenome according to alleles observed in sweet cherry. The array was evaluated using panels of sweet (n = 269) and sour (n = 330) cherry breeding germplasm. Approximately one third of array SNPs were informative for each crop. A total of 1825 polymorphic SNPs were verified in sweet cherry, 13% of these originally developed for sour cherry. Allele dosage was resolved for 2058 polymorphic SNPs in sour cherry, one third of these being originally developed for sweet cherry. This publicly available genomics resource represents a significant advance in cherry genome-scanning capability that will accelerate marker-locus-trait association discovery, genome structure investigation, and genetic diversity assessment in this diploid-tetraploid crop group. Citation: Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, et al. (2012) Development and Evaluation of a Genome-Wide 6K SNP Array for Diploid Sweet Cherry and Tetraploid Sour Cherry. PLoS ONE 7(12): e48305. doi:10.1371/journal.pone.0048305
C1 [Peace, Cameron; Main, Dorrie; Ficklin, Stephen] Washington State Univ, Dept Hort, Pullman, WA 99164 USA.
[Bassil, Nahla; Gilmore, Barbara] ARS, USDA, Corvallis, OR USA.
[Rosyara, Umesh R.; Stegmeir, Travis; Sebolt, Audrey; Iezzoni, Amy] Michigan State Univ, Dept Hort, E Lansing, MI 48824 USA.
[Lawley, Cindy] Illumina Inc, Hayward, CA USA.
[Mockler, Todd C.; Bryant, Douglas W.] Donald Danforth Plant Sci Ctr, St Louis, MO USA.
[Bryant, Douglas W.] Intuit Genom Inc, St Louis, MO USA.
[Wilhelm, Larry] Oregon Hlth & Sci Univ, Portland, OR 97201 USA.
RP Peace, C (reprint author), Washington State Univ, Dept Hort, Pullman, WA 99164 USA.
EM cpeace@wsu.edu
RI Mockler, Todd/L-2609-2013;
OI Mockler, Todd/0000-0002-0462-5775; Ficklin, Stephen/0000-0001-9138-6292
FU USDA's National Institute of Food and Agriculture - Specialty Crop
Research Initiative project, "RosBREED: Enabling marker-assisted
breeding in Rosaceae'' [2009-51181-05808]
FX This work was partially funded by the USDA's National Institute of Food
and Agriculture - Specialty Crop Research Initiative project, "RosBREED:
Enabling marker-assisted breeding in Rosaceae'' (2009-51181-05808). The
funders had no role in study design, data collection and analysis,
decision to publish, or preparation of the manuscript. No additional
external funding was received for this study.
NR 34
TC 39
Z9 39
U1 2
U2 49
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 20
PY 2012
VL 7
IS 12
AR e48305
DI 10.1371/journal.pone.0048305
PG 15
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 060RA
UT WOS:000312794500005
PM 23284615
ER
PT J
AU Paterson, AH
Wendel, JF
Gundlach, H
Guo, H
Jenkins, J
Jin, DC
Llewellyn, D
Showmaker, KC
Shu, SQ
Udall, J
Yoo, MJ
Byers, R
Chen, W
Doron-Faigenboim, A
Duke, MV
Gong, L
Grimwood, J
Grover, C
Grupp, K
Hu, GJ
Lee, TH
Li, JP
Lin, LF
Liu, T
Marler, BS
Page, JT
Roberts, AW
Romanel, E
Sanders, WS
Szadkowski, E
Tan, X
Tang, HB
Xu, CM
Wang, JP
Wang, ZN
Zhang, D
Zhang, L
Ashrafi, H
Bedon, F
Bowers, JE
Brubaker, CL
Chee, PW
Das, S
Gingle, AR
Haigler, CH
Harker, D
Hoffmann, LV
Hovav, R
Jones, DC
Lemke, C
Mansoor, S
Rahman, MU
Rainville, LN
Rambani, A
Reddy, UK
Rong, JK
Saranga, Y
Scheffler, BE
Scheffler, JA
Stelly, DM
Triplett, BA
Van Deynze, A
Vaslin, MFS
Waghmare, VN
Walford, SA
Wright, RJ
Zaki, EA
Zhang, TZ
Dennis, ES
Mayer, KFX
Peterson, DG
Rokhsar, DS
Wang, XY
Schmutz, J
AF Paterson, Andrew H.
Wendel, Jonathan F.
Gundlach, Heidrun
Guo, Hui
Jenkins, Jerry
Jin, Dianchuan
Llewellyn, Danny
Showmaker, Kurtis C.
Shu, Shengqiang
Udall, Joshua
Yoo, Mi-jeong
Byers, Robert
Chen, Wei
Doron-Faigenboim, Adi
Duke, Mary V.
Gong, Lei
Grimwood, Jane
Grover, Corrinne
Grupp, Kara
Hu, Guanjing
Lee, Tae-ho
Li, Jingping
Lin, Lifeng
Liu, Tao
Marler, Barry S.
Page, Justin T.
Roberts, Alison W.
Romanel, Elisson
Sanders, William S.
Szadkowski, Emmanuel
Tan, Xu
Tang, Haibao
Xu, Chunming
Wang, Jinpeng
Wang, Zining
Zhang, Dong
Zhang, Lan
Ashrafi, Hamid
Bedon, Frank
Bowers, John E.
Brubaker, Curt L.
Chee, Peng W.
Das, Sayan
Gingle, Alan R.
Haigler, Candace H.
Harker, David
Hoffmann, Lucia V.
Hovav, Ran
Jones, Donald C.
Lemke, Cornelia
Mansoor, Shahid
Rahman, Mehboob Ur
Rainville, Lisa N.
Rambani, Aditi
Reddy, Umesh K.
Rong, Jun-kang
Saranga, Yehoshua
Scheffler, Brian E.
Scheffler, Jodi A.
Stelly, David M.
Triplett, Barbara A.
Van Deynze, Allen
Vaslin, Maite F. S.
Waghmare, Vijay N.
Walford, Sally A.
Wright, Robert J.
Zaki, Essam A.
Zhang, Tianzhen
Dennis, Elizabeth S.
Mayer, Klaus F. X.
Peterson, Daniel G.
Rokhsar, Daniel S.
Wang, Xiyin
Schmutz, Jeremy
TI Repeated polyploidization of Gossypium genomes and the evolution of
spinnable cotton fibres
SO NATURE
LA English
DT Article
ID DNA; SEQUENCE; RECOMBINATION; ARABIDOPSIS; PLANTS; ORGANIZATION;
BARBADENSE; PATHWAYS; ANCIENT; PROTEIN
AB Polyploidy often confers emergent properties, such as the higher fibre productivity and quality of tetraploid cottons than diploid cottons bred for the same environments(1). Here we show that an abrupt five-to sixfold ploidy increase approximately 60 million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1-2 Myr ago(2), conferred about 30-36-fold duplication of ancestral angiosperm (flowering plant) genes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic complexity equalled only by Brassica(3) among sequenced angiosperms. Nascent fibre evolution, before allopolyploidy, is elucidated by comparison of spinnable-fibred Gossypium herbaceum A and non-spinnable Gossypium longicalyx F genomes to one another and the outgroup D genome of non-spinnable Gossypium raimondii. The sequence of a G. hirsutum A(t)D(t) (in which 't' indicates tetraploid) cultivar reveals many non-reciprocal DNA exchanges between subgenomes that may have contributed to phenotypic innovation and/or other emergent properties such as ecological adaptation by polyploids. Most DNA-level novelty in G. hirsutum recombines alleles from the D-genome progenitor native to its New World habitat and the Old World A-genome progenitor in which spinnable fibre evolved. Coordinated expression changes in proximal groups of functionally distinct genes, including a nuclear mitochondrial DNA block, may account for clusters of cotton-fibre quantitative trait loci affecting diverse traits. Opportunities abound for dissecting emergent properties of other polyploids, particularly angiosperms, by comparison to diploid progenitors and outgroups.
C1 [Paterson, Andrew H.; Guo, Hui; Lee, Tae-ho; Li, Jingping; Lin, Lifeng; Marler, Barry S.; Tan, Xu; Tang, Haibao; Wang, Zining; Zhang, Dong; Bowers, John E.; Das, Sayan; Gingle, Alan R.; Lemke, Cornelia; Mansoor, Shahid; Rainville, Lisa N.; Rong, Jun-kang; Wang, Xiyin] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA.
[Wendel, Jonathan F.; Yoo, Mi-jeong; Gong, Lei; Grover, Corrinne; Grupp, Kara; Hu, Guanjing; Szadkowski, Emmanuel; Xu, Chunming] Iowa State Univ, Dept Ecol Evolut & Organismal Biol, Ames, IA 50011 USA.
[Gundlach, Heidrun; Mayer, Klaus F. X.] German Res Ctr Environm Hlth GmbH, MIPS IBIS Inst Bioinformat & Syst Biol, D-85764 Neuherberg, Germany.
[Jenkins, Jerry; Shu, Shengqiang; Grimwood, Jane; Rokhsar, Daniel S.; Schmutz, Jeremy] Joint Genome Inst, Dept Energy, Walnut Creek, CA 94595 USA.
[Jenkins, Jerry; Grimwood, Jane; Schmutz, Jeremy] HudsonAlpha Inst Biotechnol, Huntsville, AL 35806 USA.
[Jin, Dianchuan; Chen, Wei; Liu, Tao; Wang, Jinpeng; Zhang, Lan; Wang, Xiyin] Hebei United Univ, Sch Life Sci, Ctr Genom & Computat Biol, Tangshan 063000, Hebei, Peoples R China.
[Jin, Dianchuan; Chen, Wei; Liu, Tao; Wang, Jinpeng; Zhang, Lan; Wang, Xiyin] Hebei United Univ, Sch Sci, Tangshan 063000, Hebei, Peoples R China.
[Llewellyn, Danny; Bedon, Frank; Brubaker, Curt L.; Walford, Sally A.; Dennis, Elizabeth S.] CSIRO Plant Ind, Canberra, ACT 2601, Australia.
[Showmaker, Kurtis C.; Sanders, William S.; Peterson, Daniel G.] Mississippi State Univ, Inst Genom Biocomp & Biotechnol, Mississippi State, MS 39762 USA.
[Udall, Joshua; Byers, Robert; Page, Justin T.; Harker, David; Rambani, Aditi] Brigham Young Univ, Plant & Wildlife Sci Dept, Provo, UT 84602 USA.
[Doron-Faigenboim, Adi; Hovav, Ran] Agr Res Org, Inst Plant Sci, Dept Field Crops, IL-50250 Bet Dagan, Israel.
[Duke, Mary V.; Scheffler, Brian E.; Scheffler, Jodi A.] USDA ARS, Jamie Whitten Delta States Res Ctr, Stoneville, MS 38776 USA.
[Roberts, Alison W.] Univ Rhode Isl, Dept Biol Sci, Kingston, RI 02881 USA.
[Romanel, Elisson] Univ Fed Rio de Janeiro, Dept Genet, BR-21941901 Rio De Janeiro, Brazil.
[Tang, Haibao] J Craig Venter Inst, Rockville, MD 20850 USA.
[Xu, Chunming] NE Normal Univ, Inst Cytol & Genet, Unit Plant Epigenet, Key Lab Mol Epigenet MOE, Changchun 5268, Peoples R China.
[Ashrafi, Hamid; Van Deynze, Allen] Univ Calif Davis, Plant Reprod Biol Extens Ctr, Davis, CA 95616 USA.
[Brubaker, Curt L.] Bayer CropSci, B-9052 Ghent, Belgium.
[Chee, Peng W.] Univ Georgia, Coastal Plain Expt Stn, Tifton, GA 31793 USA.
[Haigler, Candace H.] N Carolina State Univ, Dept Crop Sci, Raleigh, NC 27695 USA.
[Haigler, Candace H.] N Carolina State Univ, Dept Plant Biol, Raleigh, NC 27695 USA.
[Hoffmann, Lucia V.] EMBRAPA, Ctr Nacl Pesquisa Algodao, BR-75375000 Santo Antonio De Goias, Go, Brazil.
[Jones, Donald C.] Cotton Inc, Cary, NC 27513 USA.
[Mansoor, Shahid; Rahman, Mehboob Ur] Natl Inst Biotechnol & Genet Engn, Faisalabad 38000, Pakistan.
[Reddy, Umesh K.] W Virginia State Univ, Dept Biol, Institute, WV 25112 USA.
[Saranga, Yehoshua] Hebrew Univ Jerusalem, Robert H Smith Inst Plant Sci & Genet Agr, IL-76100 Rehovot, Israel.
[Stelly, David M.] Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA.
[Triplett, Barbara A.] USDA ARS, New Orleans, LA 70124 USA.
[Vaslin, Maite F. S.] Univ Fed Rio de Janeiro, Dept Microbiol, BR-21941971 Rio De Janeiro, Brazil.
[Waghmare, Vijay N.] Cent Inst Cotton Res, Nagpur 440010, Maharashtra, India.
[Wright, Robert J.] Texas Tech Univ, Dept Plant Sci, Lubbock, TX 79415 USA.
[Zaki, Essam A.] Genet Engn & Biotechnol Res Inst, Nucle Acids Dept, Alexandria 21934, Egypt.
[Zhang, Tianzhen] Nanjing Agr Univ, Key Lab Crop Genet & Germplasm Enhancement, Nanjing 210095, Jiangsu, Peoples R China.
RP Paterson, AH (reprint author), Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA.
EM paterson@plantbio.uga.edu; jschmutz@hudsonalpha.org
RI Dennis, Elizabeth/A-6074-2008; Genetic Engineering & Biotechnology,
Research Institute /E-7221-2017; Bowers, John/B-9245-2009; Tang,
Haibao/A-6715-2011; Bedon, Frank/B-5497-2011; Hoffmann,
Lucia/C-1161-2013; Walford, Sally/B-5488-2011; Romanel,
Elisson/F-1933-2013; Llewellyn, Danny/D-5230-2009; Schmutz,
Jeremy/N-3173-2013; Vaslin, Maite/G-5074-2011; Chen, Wei/J-9021-2013;
Zaki, Essam/K-8456-2015; Rahman, Mehboob-ur-/I-7983-2015; Mayer,
Klaus/M-7941-2015
OI Guo, Hui/0000-0001-7830-8564; Hu, Guanjing/0000-0001-8552-7394;
Peterson, Daniel/0000-0002-0274-5968; Stelly, David/0000-0002-3468-4119;
Romanel, Elisson/0000-0002-4794-4215; Scheffler,
Brian/0000-0003-1968-8952; Tang, Haibao/0000-0002-3460-8570; Hoffmann,
Lucia/0000-0003-2150-1990; Llewellyn, Danny/0000-0001-9535-8707;
Schmutz, Jeremy/0000-0001-8062-9172; Vaslin, Maite/0000-0002-7252-7050;
Zaki, Essam/0000-0002-3906-623X; Mayer, Klaus/0000-0001-6484-1077
FU Office of Science of the US Department of Energy [DE-AC02-05CH11231]; US
National Science Foundation [DBI 98-72630, DBI 02-11700, DBI 02-08311,
IIP-0917856, IIP-1127755, IOS 1025947]; USDA [ARS-58-6402-7-241,
58-6402-1-644, 58-6402-1-645, ARS 6402-21310-003-00, NRI 00-52100-9685,
02-35301-12045]; Bayer CropScience; Consortium for Plant Biotechnology
Research; Cotton, Inc.; Georgia State Support Committee; Texas State
Support Committee; Pakistan-US Science and Technology Cooperation
Program; US-Egypt Science and Technology Cooperation Program; Fulbright
Scholar Program; Conselho Nacional de Desenvolvimento Cientifico e
Tecnologico [PDJ150690/2012-6]; Fundacao de Amparo a Pesquisa Pensa Rio
[E-26/110.324/2010]; Texas AgriLife; Brigham Young University (BYU)
FX The work, conducted by the US Department of Energy Joint Genome
Institute, is supported by the Office of Science of the US Department of
Energy under Contract no. DE-AC02-05CH11231. The authors appreciate
financial support from the US National Science Foundation (DBI 98-72630
to A.H.P., J.F.W., A.R.G.; DBI 02-11700 to J.F.W., A.H.P., J.U., A.R.G.;
DBI 02-08311, IIP-0917856; IIP-1127755 to A.H.P.; IOS 1025947 to
C.H.H.), USDA (ARS-58-6402-7-241, 58-6402-1-644 and 58-6402-1-645 to
D.G.P.; ARS 6402-21310-003-00 to B.E.S.; NRI 00-52100-9685 and
02-35301-12045 to A.H.P.), Bayer CropScience and The Consortium for
Plant Biotechnology Research (A.H.P.), Cotton, Inc. (P.W.C., D.C.J.,
A.H.P., D.M.S., A.V.-D., J.F.W.), Georgia State Support Committee
(P.W.C., A.H.P.), Texas State Support Committee (R.J.W.), Pakistan-US
Science and Technology Cooperation Program (P.W.C., S.M., A.H.P.,
M.u.R.), US-Egypt Science and Technology Cooperation Program (A.H.P.,
E.A.Z.), Fulbright Scholar Program (S.M., E.A.Z.), Conselho Nacional de
Desenvolvimento Cientifico e Tecnologico PDJ150690/2012-6 (E.R.),
Fundacao de Amparo a Pesquisa Pensa Rio E-26/110.324/2010 (M.F.S.V.),
Texas AgriLife (D.M.S.), and Brigham Young University (BYU) Mentored
Environment Grants (J.U.). RNA-seq reads were mapped by students on
Marylou at the Fulton Supercomputer Center at BYU. We thank L.S. Dure
III, G.O. Myers, J. McD Stewart, T.A. Wilkins and J. Zhu for
co-endorsing the sequencing of G. raimondii by the US Department of
Energy.
NR 42
TC 316
Z9 350
U1 28
U2 214
PU NATURE PUBLISHING GROUP
PI LONDON
PA MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
SN 0028-0836
EI 1476-4687
J9 NATURE
JI Nature
PD DEC 20
PY 2012
VL 492
IS 7429
BP 423
EP +
DI 10.1038/nature11798
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 056KQ
UT WOS:000312488200055
PM 23257886
ER
PT J
AU Utro, F
Cornejo, OE
Livingstone, D
Motamayor, JC
Parida, L
AF Utro, Filippo
Cornejo, Omar Eduardo
Livingstone, Donald
Motamayor, Juan Carlos
Parida, Laxmi
TI ARG-based genome-wide analysis of cacao cultivars
SO BMC BIOINFORMATICS
LA English
DT Article; Proceedings Paper
CT 10th Annual Conference on Research in Computational Molecular Biology
(RECOMB) / Satellite Workshop on Comparative Genomics
CY OCT 17-19, 2012
CL Niteroi, BRAZIL
ID ANCESTRAL RECOMBINATIONS GRAPH; GENETIC DIVERSITY; NETWORKS; PATTERNS;
MARKERS
AB Background: Ancestral recombinations graph (ARG) is a topological structure that captures the relationship between the extant genomic sequences in terms of genetic events including recombinations. IRiS is a system that estimates the ARG on sequences of individuals, at genomic scales, capturing the relationship between these individuals of the species. Recently, this system was used to estimate the ARG of the recombining X Chromosome of a collection of human populations using relatively dense, bi-allelic SNP data.
Results: While the ARG is a natural model for capturing the inter-relationship between a single chromosome of the individuals of a species, it is not immediately apparent how the model can utilize whole-genome (across chromosomes) diploid data. Also, the sheer complexity of an ARG structure presents a challenge to graph visualization techniques. In this paper we examine the ARG reconstruction for (1) genome-wide or multiple chromosomes, (2) multi-allelic and (3) extremely sparse data. To aid in the visualization of the results of the reconstructed ARG, we additionally construct a much simplified topology, a classification tree, suggested by the ARG.
As the test case, we study the problem of extracting the relationship between populations of Theobroma cacao. The chocolate tree is an outcrossing species in the wild, due to self-incompatibility mechanisms at play. Thus a principled approach to understanding the inter-relationships between the different populations must take the shuffling of the genomic segments into account. The polymorphisms in the test data are short tandem repeats (STR) and are multi-allelic (sometimes as high as 30 distinct possible values at a locus). Each is at a genomic location that is bilaterally transmitted, hence the ARG is a natural model for this data. Another characteristic of this plant data set is that while it is genome-wide, across 10 linkage groups or chromosomes, it is very sparse, i.e., only 96 loci from a genome of approximately 400 megabases. The results are visualized both as MDS plots and as classification trees. To evaluate the accuracy of the ARG approach, we compare the results with those available in literature.
Conclusions: We have extended the ARG model to incorporate genome-wide (ensemble of multiple chromosomes) data in a natural way. We present a simple scheme to implement this in practice. Finally, this is the first time that a plant population data set is being studied by estimating its underlying ARG. We demonstrate an overall precision of 0.92 and an overall recall of 0.93 of the ARG-based classification, with respect to the gold standard. While we have corroborated the classification of the samples with that in literature, this opens the door to other potential studies that can be made on the ARG.
C1 [Utro, Filippo; Parida, Laxmi] IBM TJ Watson Res, Computat Biol Ctr, Yorktown Hts, NY 10598 USA.
[Cornejo, Omar Eduardo] Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA.
[Livingstone, Donald] USDA, Miami, FL 33186 USA.
[Motamayor, Juan Carlos] Mars Inc, Miami, FL 33158 USA.
RP Parida, L (reprint author), IBM TJ Watson Res, Computat Biol Ctr, Yorktown Hts, NY 10598 USA.
EM parida@us.ibm.com
NR 20
TC 1
Z9 3
U1 2
U2 16
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2105
J9 BMC BIOINFORMATICS
JI BMC Bioinformatics
PD DEC 19
PY 2012
VL 13
SU 19
AR S17
DI 10.1186/1471-2105-13-S19-S17
PG 11
WC Biochemical Research Methods; Biotechnology & Applied Microbiology;
Mathematical & Computational Biology
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Mathematical & Computational Biology
GA 063HG
UT WOS:000312986200017
PM 23281769
ER
PT J
AU Cao, HP
Shockey, JM
AF Cao, Heping
Shockey, Jay M.
TI Comparison of TaqMan and SYBR Green qPCR Methods for Quantitative Gene
Expression in Tung Tree Tissues
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE oil biosynthetic gene expression; quantitative real-time PCR; SYBR
Green; TaqMan; tung tree
ID MOUSE 3T3-L1 ADIPOCYTES; ENDOPLASMIC-RETICULUM; EXTRACT;
TRISTETRAPROLIN; ISOFORMS; PCR; RNA
AB Quantitative real-time-PCR (qPCR) is widely used for gene expression analysis due to its large dynamic range, tremendous sensitivity, high sequence specificity, little to no postamplification processing, and sample throughput. TaqMan and SYBR Green qPCR are two frequently used methods. However, direct comparison of both methods using the same primers and biological samples is still limited. We compared both assays using seven RNAs from the seeds, leaves, and flowers of tung tree (Vernicia fordii), which produces high-value industrial oil. High-quality RNA were isolated from tung tissues, as indicated by a high rRNA ratio and RNA integrity number. qPCR primers and TaqMan probes were optimized. Under optimized conditions, both qPCR gave high correlation coefficiency and similar amplification efficiency, but TaqMan qPCR generated higher y-intercepts than SYBR Green qPCR, which overestimated the expression levels regardless of the genes and tissues tested. This is validated using well-known Dgat2 and Fadx gene expression in tung tissues. The results demonstrate that both assays are reliable for determining gene expression in tung tissues and that the TaqMan assay is more sensitive but generates lower calculated expression levels than the SYBR Green assay. This study suggests that any discussion of gene expression levels needs to be linked to which qPCR method is used in the analysis.
C1 [Cao, Heping; Shockey, Jay M.] ARS, Commod Utilizat Res Unit, So Reg Res Ctr, USDA, New Orleans, LA 70124 USA.
RP Cao, HP (reprint author), ARS, Commod Utilizat Res Unit, So Reg Res Ctr, USDA, 1100 Robert E Lee Blvd, New Orleans, LA 70124 USA.
EM Heping.Cao@ars.usda.gov
OI Shockey, Jay/0000-0002-5057-5457
FU USDA-Agricultural Research Service Quality and Utilization of
Agricultural Products Research Program 306 [CRIS 6435-4000-106-00D]
FX This work was supported by the USDA-Agricultural Research Service
Quality and Utilization of Agricultural Products Research Program 306
through CRIS 6435-4000-106-00D.
NR 24
TC 19
Z9 19
U1 5
U2 33
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD DEC 19
PY 2012
VL 60
IS 50
BP 12296
EP 12303
DI 10.1021/jf304690e
PG 8
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA 056BU
UT WOS:000312464100010
PM 23176309
ER
PT J
AU Gonzalez, VH
Sepulveda, PA
Griswold, TL
AF Gonzalez, Victor H.
Sepulveda, Paula A.
Griswold, Terry L.
TI Taxonomic notes on American Heriades Spinola, 1808 and Leioproctus
Smith, 1853 (Hymenoptera: Megachilidae, Colletidae)
SO ZOOTAXA
LA English
DT Letter
ID N.
C1 [Gonzalez, Victor H.] SW Oklahoma State Univ, Dept Biol Sci, Weatherford, OK 73096 USA.
[Gonzalez, Victor H.] Univ Kansas, Div Entomol, Nat Hist Museum, Lawrence, KS 66045 USA.
[Sepulveda, Paula A.] Univ Magdalena, Entomol Lab, Santa Marta, Colombia.
[Griswold, Terry L.] Utah State Univ, USDA ARS, Bee Biol & Systemat Lab, Logan, UT 84322 USA.
RP Gonzalez, VH (reprint author), SW Oklahoma State Univ, Dept Biol Sci, 100 Campus Dr, Weatherford, OK 73096 USA.
EM victorgonzab@gmail.com; entomopaula@gmail.com;
terry.griswold@ars.usda.gov
NR 4
TC 0
Z9 0
U1 0
U2 0
PU MAGNOLIA PRESS
PI AUCKLAND
PA PO BOX 41383, AUCKLAND, ST LUKES 1030, NEW ZEALAND
SN 1175-5326
EI 1175-5334
J9 ZOOTAXA
JI Zootaxa
PD DEC 19
PY 2012
IS 3591
BP 75
EP 78
PG 4
WC Zoology
SC Zoology
GA 055WI
UT WOS:000312448200004
ER
PT J
AU Millership, S
Ninkina, N
Guschina, IA
Norton, J
Brambilla, R
Oort, PJ
Adams, SH
Dennis, RJ
Voshol, PJ
Rochford, JJ
Buchman, VL
AF Millership, Steven
Ninkina, Natalia
Guschina, Irina A.
Norton, Jessica
Brambilla, Ricardo
Oort, Pieter J.
Adams, Sean H.
Dennis, Rowena J.
Voshol, Peter J.
Rochford, Justin J.
Buchman, Vladimir L.
TI Increased lipolysis and altered lipid homeostasis protect
gamma-synuclein-null mutant mice from diet-induced obesity
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA
LA English
DT Article
ID ADIPOSE TRIGLYCERIDE LIPASE; ALPHA-SYNUCLEIN; IN-VITRO; GENE;
OVEREXPRESSION; RESISTANCE; MUTATIONS; DOPAMINE; DROPLETS; BEHAVIOR
AB Synucleins are a family of homologous proteins principally known for their involvement in neurodegeneration. gamma-Synuclein is highly expressed in human white adipose tissue and increased in obesity. Here we show that gamma-synuclein is nutritionally regulated in white adipose tissue whereas its loss partially protects mice from high-fat diet (HFD)-induced obesity and ameliorates some of the associated metabolic complications. Compared with HFD-fed WT mice, HFD-fed gamma-synuclein-null mutant mice display increased lipolysis, lipid oxidation, and energy expenditure, and reduced adipocyte hypertrophy. Knockdown of gamma-synuclein in adipocytes causes redistribution of the key lipolytic enzyme ATGL to lipid droplets and increases lipolysis. gamma-Synuclein-deficient adipocytes also contain fewer SNARE complexes of a type involved in lipid droplet fusion. We hypothesize that gamma-synuclein may deliver SNAP-23 to the SNARE complexes under lipogenic conditions. Via these independent but complementary roles, gamma-synuclein may coordinately modulate lipid storage by influencing lipolysis and lipid droplet formation. Our data reveal gamma-synuclein as a regulator of lipid handling in adipocytes, the function of which is particularly important in conditions of nutrient excess.
C1 [Millership, Steven; Ninkina, Natalia; Guschina, Irina A.; Norton, Jessica; Brambilla, Ricardo; Buchman, Vladimir L.] Cardiff Univ, Sch Biosci, Cardiff CF10 3AX, S Glam, Wales.
[Brambilla, Ricardo] San Raffaele Fdn & Univ, Inst Expt Neurol, Div Neurosci, I-20132 Milan, Italy.
[Oort, Pieter J.; Adams, Sean H.] USDA ARS, Obes & Metab Res Unit, Western Human Nutr Res Ctr, Davis, CA 95616 USA.
[Dennis, Rowena J.; Voshol, Peter J.; Rochford, Justin J.] Univ Cambridge, Inst Metab Sci, Metab Res Labs, Cambridge CB2 0QQ, England.
[Dennis, Rowena J.; Voshol, Peter J.; Rochford, Justin J.] Addenbrookes Hosp, Natl Inst Hlth Res, Cambridge Biomed Res Ctr, Cambridge CB2 0QQ, England.
RP Rochford, JJ (reprint author), Univ Cambridge, Inst Metab Sci, Metab Res Labs, Cambridge CB2 0QQ, England.
EM jjr30@cam.ac.uk; buchmanvl@cf.ac.uk
RI Buchman, Vladimir/A-4814-2010; Ninkina, Natalia/A-1732-2011
OI Buchman, Vladimir/0000-0002-7631-8352;
FU Wellcome Trust [075615/Z/04/z]; Medical Research Council (MRC)
[GO800203]; MRC Centre for Obesity and Related Metabolic Diseases
[GO600717]
FX We thank Derek Scarborough, Stephen Paisey, Pavel Tokarchuk, and Gurdeep
Kooner for help with some experiments. This work was supported by
Wellcome Trust Grant 075615/Z/04/z (to V. L. B.), Medical Research
Council (MRC) New Investigator Research Grant GO800203 (to J.J.R.), and
MRC Centre for Obesity and Related Metabolic Diseases Grant GO600717.
NR 29
TC 10
Z9 10
U1 1
U2 4
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 18
PY 2012
VL 109
IS 51
BP 20943
EP 20948
DI 10.1073/pnas.1210022110
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 065BZ
UT WOS:000313123700044
PM 23213245
ER
PT J
AU Choe, A
Chuman, T
von Reuss, SH
Dossey, AT
Yim, JJ
Ajredini, R
Kolawa, AA
Kaplan, F
Alborn, HT
Teal, PEA
Schroeder, FC
Sternberg, PW
Edison, AS
AF Choe, Andrea
Chuman, Tatsuji
von Reuss, Stephan H.
Dossey, Aaron T.
Yim, Joshua J.
Ajredini, Ramadan
Kolawa, Adam A.
Kaplan, Fatma
Alborn, Hans T.
Teal, Peter E. A.
Schroeder, Frank C.
Sternberg, Paul W.
Edison, Arthur S.
TI Sex-specific mating pheromones in the nematode Panagrellus redivivus
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA
LA English
DT Article
DE chemical ecology; chemical signaling; peroxisomal beta-oxidation;
metabolomics
ID SMALL-MOLECULE SIGNALS; CAENORHABDITIS-ELEGANS; DAUER PHEROMONE;
C-ELEGANS; ATTRACTION; COMPONENT; BEHAVIOR
AB Nematodes use an extensive chemical language based on glycosides of the dideoxysugar ascarylose for developmental regulation (dauer formation), male sex attraction, aggregation, and dispersal. However, no examples of a female-or hermaphrodite-specific sex attractant have been identified to date. In this study, we investigated the pheromone system of the gonochoristic sour paste nematode Panagrellus redivivus, which produces sex-specific attractants of the opposite sex. Activity-guided fractionation of the P. redivivus exometabolome revealed that males are strongly attracted to ascr#1 (also known as daumone), an ascaroside previously identified from Caenorhabditis elegans hermaphrodites. Female P. redivivus are repelled by high concentrations of ascr#1 but are specifically attracted to a previously unknown ascaroside that we named dhas#18, a dihydroxy derivative of the known ascr#18 and an ascaroside that features extensive functionalization of the lipid-derived side chain. Targeted profiling of the P. redivivus exometabolome revealed several additional ascarosides that did not induce strong chemotaxis. We show that P. redivivus females, but not males, produce the male-attracting ascr#1, whereas males, but not females, produce the female-attracting dhas#18. These results show that ascaroside biosynthesis in P. redivivus is highly sex-specific. Furthermore, the extensive side chain functionalization in dhas#18, which is reminiscent of polyketide-derived natural products, indicates unanticipated biosynthetic capabilities in nematodes.
C1 [Choe, Andrea; Kolawa, Adam A.; Sternberg, Paul W.] CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA.
[Choe, Andrea; Kolawa, Adam A.; Sternberg, Paul W.] CALTECH, Div Biol, Pasadena, CA 91125 USA.
[Chuman, Tatsuji; Dossey, Aaron T.; Ajredini, Ramadan; Edison, Arthur S.] Univ Florida, Dept Biochem, Gainesville, FL 32610 USA.
[Chuman, Tatsuji; Dossey, Aaron T.; Ajredini, Ramadan; Edison, Arthur S.] Univ Florida, Mol Biol & Natl High Magnet Field Lab, Gainesville, FL 32610 USA.
[von Reuss, Stephan H.; Yim, Joshua J.; Schroeder, Frank C.] Cornell Univ, Boyce Thompson Inst, Ithaca, NY 14853 USA.
[von Reuss, Stephan H.; Yim, Joshua J.; Schroeder, Frank C.] Cornell Univ, Dept Chem & Chem Biol, Ithaca, NY 14853 USA.
[Kaplan, Fatma; Alborn, Hans T.; Teal, Peter E. A.] USDA ARS, Ctr Med Agr & Vet Entomol, Gainesville, FL 32608 USA.
RP Sternberg, PW (reprint author), CALTECH, Howard Hughes Med Inst, Pasadena, CA 91125 USA.
EM pws@caltech.edu; aedison@ufl.edu
OI von Reuss, Stephan/0000-0003-4325-5495; Schroeder,
Frank/0000-0002-4420-0237
FU National Science Foundation; National Institutes of Health [R01GM085285]
FX We thank James R. Rocca for expert assistance in NMR data collection and
interpretation. NMR data were collected in the University of Florida
Advanced Magnetic Resonance Imaging and Spectroscopy (AMRIS) Facility,
which is supported in part by the National Science Foundation-funded
National High Magnetic Field Laboratory. Support for this study was from
National Institutes of Health Grant R01GM085285.
NR 26
TC 19
Z9 20
U1 1
U2 57
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 18
PY 2012
VL 109
IS 51
BP 20949
EP 20954
DI 10.1073/pnas.1218302109
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 065BZ
UT WOS:000313123700045
PM 23213209
ER
PT J
AU Hakk, H
Szabo, DT
Huwe, J
Diliberto, J
Birnbaum, LS
AF Hakk, Heldur
Szabo, David T.
Huwe, Janice
Diliberto, Janet
Birnbaum, Linda S.
TI Novel and Distinct Metabolites Identified Following a Single Oral Dose
of alpha- or gamma-Hexabromocyclododecane in Mice
SO ENVIRONMENTAL SCIENCE & TECHNOLOGY
LA English
DT Article
ID BROMINATED FLAME RETARDANTS; HYDROXYLATED METABOLITES; TISSUE
DISTRIBUTION; REPEATED EXPOSURE; DIPHENYL ETHERS; RAINBOW-TROUT;
FOOD-WEB; HBCD; RAT; TOXICOKINETICS
AB The metabolism of alpha- and gamma-hexabromocyclododecane (HBCD) was investigated in adult C57BL/6 female mice. alpha- or gamma-[C-14]HBCD (3 mg/kg bw) was orally administered with subsequent urine and feces collection for 4 consecutive days; a separate group of mice was dosed and sacrificed 3 h postexposure to investigate tissue metabolite levels. Extractable and nonextractable HBCD metabolites were quantitated in liver, blood, fat, brain, bile, urine, and feces and characterized by LC/MS (ESI-). Metabolites identified were distinct between the two stereoisomers. In mice exposed to alpha-HBCD, four hydroxylated metabolites were detected in fecal extracts, and one of these metabolite isomers was consistently characterized in liver, brain, and adipose tissue extracts. In contrast, fecal extracts from mice exposed to gamma-HBCD contained multiple isomers of monohydroxy-pentabromocyclododecene, dihydroxy-pentabromocyclododecene, and dihydroxy-pentabromocyclododecadiene, while in liver and adipose tissues extracts only a single monohydroxy-pentabromocyclododecane metabolite was observed. Both stereoisomers were transformed to metabolites which formed covalent bonds to proteins and/or lipids in the gut as suggested by high fecal nonextractables. The presence of tissue- and excreta-specific metabolic products after in vivo exposure to the two main HBCD stereoisomers supports previous toxicokinetic studies indicating that these two stereoisomers are biologically distinct. The distinct metabolic products identified in this study have the potential to aid in the identification of stereoisomer-specific HBCD exposures in future biomonitoring studies.
C1 [Hakk, Heldur; Szabo, David T.; Huwe, Janice] ARS, USDA, Biosci Res Lab, Fargo, ND 58102 USA.
[Hakk, Heldur; Szabo, David T.; Huwe, Janice] US EPA, Natl Ctr Environm Assessment, Off Res & Dev, Washington, DC 20460 USA.
[Diliberto, Janet] US EPA, Off Res & Dev, Natl Hlth & Environm Effects Res Lab, Integrated Syst Toxicol Div, Res Triangle Pk, NC 27711 USA.
[Birnbaum, Linda S.] NCI, Res Triangle Pk, NC 27709 USA.
[Birnbaum, Linda S.] NIEHS, NIH, Res Triangle Pk, NC 27709 USA.
RP Hakk, H (reprint author), ARS, USDA, Biosci Res Lab, 1605 Albrecht Blvd, Fargo, ND 58102 USA.
EM heldur.hakk@ars.usda.gov
FU University of North Carolina in Chapel Hill; Environmental Protection
Agency [CR 833237]
FX We thank Colleen Pfaff, Jason Holthusen, Sara Lupton, and Barbara
Magelky for technical assistance. This work is funded in part by a
cooperative agreement between the University of North Carolina in Chapel
Hill and the Environmental Protection Agency CR 833237 predoctoral
training grants. This manuscript does not reflect USEPA, NIH, or USDA
policy. The use of trade, firm, or corporation names in this publication
is for the information and convenience of the reader. Such use does not
constitute an official endorsement or approval by the United States
Department of Agriculture, the Agricultural Research Service, or the
Food Safety and Inspection Service of any product or service to the
exclusion of others that may be suitable. USDA is an equal opportunity
provider and employer.
NR 40
TC 28
Z9 28
U1 3
U2 78
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0013-936X
J9 ENVIRON SCI TECHNOL
JI Environ. Sci. Technol.
PD DEC 18
PY 2012
VL 46
IS 24
BP 13494
EP 13503
DI 10.1021/es303209g
PG 10
WC Engineering, Environmental; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA 055QT
UT WOS:000312432200059
PM 23171393
ER
PT J
AU Stabel, JR
Barnhill, A
Bannantine, JP
Chang, YF
Osman, MA
AF Stabel, J. R.
Barnhill, A.
Bannantine, J. P.
Chang, Y. F.
Osman, M. A.
TI Evaluation of protection in a mouse model after vaccination with
Mycobacterium avium subsp paratuberculois protein cocktails
SO VACCINE
LA English
DT Article
DE Mycobacterium avium subsp paratuberculosis; Vaccine; Protein; Mice
ID IMMUNE-RESPONSES; JOHNES-DISEASE; BOVINE PARATUBERCULOSIS; KILLED
VACCINE; DAIRY HERDS; CATTLE; IMMUNIZATION; INFECTION; EFFICACY;
ANTIBODY
AB Whole-cell vaccines successfully reduce signs of clinical disease and fecal shedding of Mycobacterium avium subsp. paratuberculosis (MAP), however, these vaccines have some limitations. The present study was conducted to identify MAP proteins that might be candidates for the development of an improved vaccine. MAP proteins were screened for immunogenicity in naturally infected cattle and selected based upon reactivity in the interferon-gamma (IFN-gamma) and Western blot assays. Proteins (MAP1087, MAP1204, MAP1272c, and MAP2077c) were arrayed into 4 overlapping cocktails containing 3 proteins each. The efficacy of the proteins within these cocktails as vaccine candidates was evaluated by subcutaneous immunization of mice, followed by challenge with live, virulent MAP. All MAP protein cocktails significantly reduced the recovery of live MAP from the ileum, while cocktails 1 and 3 reduced colonization in the liver. No significant differences were seen in the mesenteric lymph node or spleen, however, cocktail 1 reduced viable MAP in the mesenteric lymph node compared to other treatments. Stimulation of splenocytes upregulated antigen-specific IFN-gamma and IL-23 secretion in all treatment groups, regardless of vaccination. Interestingly. IL-4 was moderately downregulated for vaccinates compared to control infected mice. An increase in total CD25 expression was noted for 3 of the 4 vaccinate groups upon stimulation of splenocytes with a whole cell sonicate of MAP, with this effect becoming more significant within CD4CD25+ and CD8CD25+ subpopulations. The present study demonstrated that MAP proteins are useful as vaccine candidates to reduce MAP tissue burden. Published by Elsevier Ltd.
C1 [Stabel, J. R.; Barnhill, A.; Bannantine, J. P.] ARS, USDA, Natl Anim Dis Ctr, Ames, IA 50010 USA.
[Chang, Y. F.] Cornell Univ, Ithaca, NY 14850 USA.
[Osman, M. A.] Iowa State Univ, Ames, IA 50011 USA.
RP Stabel, JR (reprint author), ARS, USDA, Natl Anim Dis Ctr, 2300 Dayton Rd, Ames, IA 50010 USA.
EM judy.stabel@ars.usda.gov
OI Bannantine, John/0000-0002-5692-7898
NR 33
TC 7
Z9 7
U1 0
U2 7
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0264-410X
J9 VACCINE
JI Vaccine
PD DEC 17
PY 2012
VL 31
IS 1
BP 127
EP 134
DI 10.1016/j.vaccine.2012.10.090
PG 8
WC Immunology; Medicine, Research & Experimental
SC Immunology; Research & Experimental Medicine
GA 067PA
UT WOS:000313306400017
PM 23137840
ER
PT J
AU Anderson, RG
Jin, YF
Goulden, ML
AF Anderson, Ray G.
Jin, Yufang
Goulden, Michael L.
TI Assessing regional evapotranspiration and water balance across a
Mediterranean montane climate gradient
SO AGRICULTURAL AND FOREST METEOROLOGY
LA English
DT Article
DE California; Evapotranspiration; Evaporative fraction; Runoff;
Terrestrial water storage anomalies; Regional scale; Mountain hydrology
ID MOUNTAINOUS TERRAIN; CARBON-DIOXIDE; SPATIAL VARIABILITY; EVAPORATIVE
FRACTION; SEMIARID GRASSLAND; COMPLEX TERRAIN; UNITED-STATES; MODIS;
SCALE; VEGETATION
AB We evaluate a new approach to estimate regional evapotranspiration (ET) across a montane, Mediterranean climate gradient in the San Jacinto and Santa Rosa Mountains of Southern California. Spatially distributed evaporative fraction (EF) measurements were made monthly from October 2008 to September 2009 at 54 locations across an elevational gradient using a mobile measurement platform, called the Regional Evaporative Fraction Energy Balance (REFEB) method. We used these measurements and the Enhanced Vegetation Index (EVI) from MODerate resolution Imaging Spectroradiometer (MODIS) observations to derive EF at a regional scale. We converted EF to monthly ET using remote-sensing based observations of available energy. We compared the REFEB ET estimates, along with modified Priestly-Taylor (PT) ET estimates driven by MODIS data against four eddy covariance (EC) towers and eight gauged catchments. Both of the satellite-based ET estimates were highly correlated with tower ET observations (r(2) = 0.66 for REFEB and 0.95 for PT). The PT MODIS approach overestimated ET compared to precipitation estimates and stream gauge measurements, while REFEB ET was moderately lower than PT ET. The annual regional REFEB ET (193 mm) was 87 mm less than precipitation (280 mm). REFEB Er underestimated EC tower ET (regression slope = 0.78, p < 0.001). Regional PT ET (288 mm) exceeded precipitation by 8 mm and significantly overestimated EC tower Er (regression slope = 1.43, p < 0.001). The relationship between precipitation and ET is not linear, with a break around 290 mm/year, at which point ET becomes nearly constant at 200-300 mm/year with increasing precipitation. This causes a break in the precipitation-runoff relationship, with a disproportionate increase in runoff when precipitation exceeds 290 mm/year. REFEB provides a viable method to estimate regional ET, which is applicable to areas that are poorly constrained by other remote sensing approaches. Published by Elsevier B.V.
C1 [Anderson, Ray G.; Jin, Yufang; Goulden, Michael L.] Univ Calif Irvine, Dept Earth Syst Sci, Irvine, CA USA.
[Anderson, Ray G.] Univ Calif Irvine, UC Ctr Hydrol Modeling, Irvine, CA USA.
RP Anderson, RG (reprint author), USDA ARS, Water Management Res Unit, 9611 S Riverbend Ave, Parlier, CA 93648 USA.
EM ray.anderson@ars.usda.gov; yufang@uci.edu; mgoulden@uci.edu
OI Anderson, Ray/0000-0002-6202-5890
FU NASA [NNX08AR69G]; U.S. Department of Energy; Ralph and Carol Cicerone
Fellowship at UC-Irvine; UC Center for Hydrologic Modeling
FX We thank Jay Famiglietti, Jim Randerson, Min-Hui Lo, and J.T. Reager for
their comments and feedback and Aaron Fellows for his insight into the
San Jacinto Mountains. Qiaozhen Mu gave us MOD16 data for the SJSR.
Logistical field support for this research was provided by the
University of California's James Reserve and Rebecca Fenwick and Taylor
Jeffrey. We also thank the University of California's Deep Canyon
Reserve and Mark Fisher for providing independent precipitation data
used to evaluate PRISM. Wayne Gibson (PRISM) provided additional details
about input data used in PRISM interpolation. Funding for this research
was provided by NASA (NNX08AR69G) and the U.S. Department of Energy.
Funding for Ray Anderson was also provided by a Ralph and Carol Cicerone
Fellowship at UC-Irvine and the UC Center for Hydrologic Modeling.
NR 77
TC 5
Z9 7
U1 2
U2 40
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-1923
J9 AGR FOREST METEOROL
JI Agric. For. Meteorol.
PD DEC 15
PY 2012
VL 166
BP 10
EP 22
DI 10.1016/j.agrformet.2012.07.004
PG 13
WC Agronomy; Forestry; Meteorology & Atmospheric Sciences
SC Agriculture; Forestry; Meteorology & Atmospheric Sciences
GA 070AV
UT WOS:000313479100003
ER
PT J
AU Clark, KL
Skowronski, N
Gallagher, M
Renninger, H
Schafer, K
AF Clark, Kenneth L.
Skowronski, Nicholas
Gallagher, Michael
Renninger, Heidi
Schaefer, Karina
TI Effects of invasive insects and fire on forest energy exchange and
evapotranspiration in the New Jersey pinelands
SO AGRICULTURAL AND FOREST METEOROLOGY
LA English
DT Article
DE Evapotranspiration; Leaf area index; Eddy covariance; Gypsy moth
defoliation; Prescribed fire; Disturbance
ID PINE-BARRENS; WATER FLUXES; CARBON; CHRONOSEQUENCE; BALANCE; FLORIDA;
CANOPY; CANADA; MATURE; SITES
AB We used eddy covariance and meteorological measurements to quantify energy exchange and evapotranspiration (Et) in three representative upland forest stands in the New Jersey Pinelands that were either defoliated by gypsy moth (Lymantria dispar L) or burned in prescribed fires during the study period. Latent (lambda E) and sensible heat (H) fluxes were linear functions of available energy, and seasonality had a major effect on the partitioning of available energy into lambda E and H at each stand. Both defoliation and prescribed fire reduced leaf area, altered the partitioning of available energy, and reduced lambda E flux compared to undisturbed periods. Summer daily Et averaged 4.2 +/- 1.5, 33 +/- 1.2 and 3.9 +/- 1.3 mm day(-1) at the oak-, mixed, and pine-dominated stands during undisturbed periods, but only 2.4 +/- 0.9 mm day(-1) during defoliation at the oak stand in 2007, and 2.4 +/- 0.9 and 3.2 +/- 0.9 mm day(-1) following spring fires at the mixed and pine-dominated stands, respectively. For all years measured, seasonal maximum leaf area index (LAI) explained 82% of the variability in daily Et during the summer at the oak stand, and 80% of the variability at the mixed and pine-dominated stands. Annual Et averaged 614, 493, and 683 mm yr(-1) at the oak, mixed, and pine stands, respectively. When averaged across all stands and years, annual Et was 606 mm yr(-1), ca. 53.6% of incident precipitation, and similar to long-term averages reported in other studies in the Pinelands. Gypsy moth defoliation potentially reduced Et by ca. 31 mm yr(-1) across all upland forests in 2007, resulting in a 7.3% increase in groundwater recharge. Our research indicates that non-stand replacing disturbances can have significant effects on energy partitioning, and can reduce Et at the stand and landscape scales. Published by Elsevier B.V.
C1 [Clark, Kenneth L.; Skowronski, Nicholas; Gallagher, Michael] US Forest Serv, USDA, No Res Stn, New Lisbon, NJ 08064 USA.
[Renninger, Heidi; Schaefer, Karina] Rutgers State Univ, Dept Biol Sci, Newark, NJ 07102 USA.
RP Clark, KL (reprint author), POB 232, New Lisbon, NJ 08064 USA.
EM kennethclark@fs.fed.us
RI Renninger, Heidi/E-5237-2015; Skowronski, Nicholas/N-4417-2013
OI Renninger, Heidi/0000-0002-2485-9835; Skowronski,
Nicholas/0000-0002-5801-5614
NR 42
TC 30
Z9 30
U1 4
U2 55
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-1923
EI 1873-2240
J9 AGR FOREST METEOROL
JI Agric. For. Meteorol.
PD DEC 15
PY 2012
VL 166
BP 50
EP 61
DI 10.1016/j.agrformet.2012.07.007
PG 12
WC Agronomy; Forestry; Meteorology & Atmospheric Sciences
SC Agriculture; Forestry; Meteorology & Atmospheric Sciences
GA 070AV
UT WOS:000313479100007
ER
PT J
AU Wickham, JD
Wade, TG
Riitters, KH
AF Wickham, James D.
Wade, Timothy G.
Riitters, Kurt H.
TI Comparison of cropland and forest surface temperatures across the
conterminous United States
SO AGRICULTURAL AND FOREST METEOROLOGY
LA English
DT Article
DE Albedo; Climate change; DTR; Land cover; MODIS; NLCD
ID LAND-COVER CHANGE; SCALE DEFORESTATION; TEMPORAL-CHANGE; CLIMATE-CHANGE;
CARBON-CYCLE; IMPACT; FRAGMENTATION; ALBEDO; FEEDBACKS; LANDSCAPE
AB Global climate models (GCM) investigating the effects of land cover on climate have found that replacing extra-tropical forest with cropland promotes cooling. We compared cropland and forest surface temperatures across the continental United States in 16 cells that were approximately 1 degrees x 2 degrees using 1 km(2) MODIS land surface temperature (LST) data and land cover from the 0.0009 km(2) National Land Cover Database (NLCD). We found that forest surface temperatures tended to be cooler than cropland surface temperatures. This relationship held for spring, summer, fall, and annually. In winter, cropland surface temperatures were cooler than forest surface temperatures except in the southeastern United States, where forest surface temperatures were also cooler in winter. The difference between cropland and forest surface temperatures was driven by daytime maxima, which tended to be twice as large as differences in nighttime minima. The dominance of daytime maxima was influenced by the degree of continentality. For cells on coastal margins or with a high proportion of inland lakes, differences between cropland and forest nighttime minima tended to be very small. In more continental locations croplands were noticeably cooler at night which often led to insignificant differences between cropland and forest average surface temperatures. Published by Elsevier B.V.
C1 [Wickham, James D.; Wade, Timothy G.] US EPA, Natl Exposure Res Lab, Res Triangle Pk, NC 27711 USA.
[Riitters, Kurt H.] US Forest Serv, USDA, So Res Stn, Eastern Forest Environm Threat Assessment Ctr, Res Triangle Pk, NC 27709 USA.
RP Wickham, JD (reprint author), US EPA, Natl Exposure Res Lab, Res Triangle Pk, NC 27711 USA.
EM wickham.james@epa.gov
NR 47
TC 12
Z9 13
U1 3
U2 31
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-1923
J9 AGR FOREST METEOROL
JI Agric. For. Meteorol.
PD DEC 15
PY 2012
VL 166
BP 137
EP 143
DI 10.1016/j.agrformet.2012.07.002
PG 7
WC Agronomy; Forestry; Meteorology & Atmospheric Sciences
SC Agriculture; Forestry; Meteorology & Atmospheric Sciences
GA 070AV
UT WOS:000313479100015
ER
PT J
AU Fischer, ML
Torn, MS
Billesbach, DP
Doyle, G
Northup, B
Biraud, SC
AF Fischer, Marc L.
Torn, Margaret S.
Billesbach, David P.
Doyle, Geoffrey
Northup, Brian
Biraud, Sebastien C.
TI Carbon, water, and heat flux responses to experimental burning and
drought in a tallgrass prairie
SO AGRICULTURAL AND FOREST METEOROLOGY
LA English
DT Article
DE Grassland; Prairie; Fire; Eddy covariance; Carbon exchange; Water stress
ID SOIL CO2 FLUX; GRASSLAND ECOSYSTEM; DIOXIDE FLUXES; EXCHANGE; FIRE;
VARIABILITY; FREQUENCY; NORTHERN; VAPOR
AB Drought and fire are common disturbances to grassland ecosystems. We report two years of eddy covariance ecosystem-atmosphere fluxes and biometric variables measured in nearby burned and unburned pastures in the US Southern Great Plains. Over the course of the experiment, annual precipitation (similar to 600 mm yr(-1)) was lower than the long term mean (similar to 860 mm yr(-1)). Soil moisture decreased from productive conditions in March 2005 dry, unproductive conditions during the growing season starting in March 2006. Just prior to the burn in early March 2005, burned and unburned pastures contained 520 +/- 60 and 360 +/- 40 g C m(-2) of total above ground biomass (AGB) and litter, respectively. The fire removed approximately 200 g C m(-2) of litter and biomass. In the 2005 growing season following the burn, maximum green AGB was 450 +/- 60 and 270 +/- 40 g C m(-2), with corresponding cumulative annual net ecosystem carbon exchange (NEE) of -330 and -150 g C m(-2) for the burned and unburned pastures, respectively. In contrast to NEE, cumulative mean sensible heat and water fluxes were approximately equal in both pastures during the growing season, suggesting either an increase in water use efficiency or a decrease in evaporation in the burned relative to the unburned pasture. In the 2006 growing season, dry conditions decreased carbon uptake and latent heat, and increased sensible heat fluxes. Peak AGB was reduced to 210 +/- 30 g C m(-2) and 140 +/- 30 g C m(-2) in the burned and unburned pastures, respectively, while NEE was near zero. These results suggest that the lack of precipitation was responsible for most of the interannual variation in carbon exchange for these un-irrigated prairie pastures. (c) 2012 Elsevier B.V. All rights reserved.
C1 [Fischer, Marc L.; Torn, Margaret S.; Biraud, Sebastien C.] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA.
[Billesbach, David P.] Univ Nebraska, Dept Biol Syst Engn, Lincoln, NE 68583 USA.
[Doyle, Geoffrey] Sci Applicat Int Corp, Aberdeen Proving Ground, MD 21010 USA.
[Northup, Brian] USDA, Grazing Lands Res Lab, El Reno, OK 73036 USA.
RP Fischer, ML (reprint author), Univ Calif Berkeley, Lawrence Berkeley Natl Lab, MS 90K-125,1 Cyclotron Rd, Berkeley, CA 94720 USA.
EM mlfischer@lbl.gov; mstorn@lbl.gov; dbillesbach1@unl.edu;
geoffrey.l.doyle@saic.com; brian.northup@ars.usda.gov; scbiraud@lbl.gov
RI Biraud, Sebastien/M-5267-2013; Young, Kristina/M-3069-2014; Torn,
Margaret/D-2305-2015
OI Biraud, Sebastien/0000-0001-7697-933X;
FU USDA; Office of Biological and Environmental Research of the U.S.
Department of Energy as part of the Atmospheric Radiation Measurement
Program [DE-AC02-05CH11231]
FX The authors gratefully acknowledge Dr. Herman Mayeaux, former director
of the USDA Grazing Lands Research Laboratory, for his vision and
assistance in designing and initiating the experiment. We also thank the
USDA at El Reno, OK and Patrick Dowell of the USDOE ARM Southern Great
Plains ACRF facility for collecting biomass samples and maintaining the
instrumentation deployed for this research. This research was supported
by the USDA and the Office of Biological and Environmental Research of
the U.S. Department of Energy under grant or contract number
DE-AC02-05CH11231 as part of the Atmospheric Radiation Measurement
Program.
NR 29
TC 12
Z9 12
U1 1
U2 54
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-1923
J9 AGR FOREST METEOROL
JI Agric. For. Meteorol.
PD DEC 15
PY 2012
VL 166
BP 169
EP 174
DI 10.1016/j.agrformet.2012.07.011
PG 6
WC Agronomy; Forestry; Meteorology & Atmospheric Sciences
SC Agriculture; Forestry; Meteorology & Atmospheric Sciences
GA 070AV
UT WOS:000313479100018
ER
PT J
AU Wright, MS
Cornelius, ML
AF Wright, Maureen S.
Cornelius, Mary L.
TI Mortality and repellent effects of microbial pathogens on Coptotermes
formosanus (Isoptera: Rhinotermitidae)
SO BMC MICROBIOLOGY
LA English
DT Article
ID METARHIZIUM-ANISOPLIAE; BIOLOGICAL-CONTROL; RETICULITERMES-FLAVIPES;
SUBTERRANEAN TERMITES; FUMOSOROSEUS; DEFENSE; SHIRAKI; FUNGI
AB Background: Two entomopathogenic fungi, Isaria fumosorosea and Metarhizium anisopliae, and one bacterium, Bacillus thuringiensis, were tested for their ability to cause mortality of Formosan subterranean termites (FST), Coptotermes formosanus (Shiraki), after liquid exposure, and for their lack of propensity to repel FST.
Results: The fungus Isaria fumosorosea at 10(8) spores/ml caused 72.5% mortality on day 7, significantly higher than the control and 10(6) spores/ml treatment. On day 14, the 10(6) and 10(8) concentrations caused 38.8% and 92.5% mortality, respectively, significantly higher than the control. On day 21, 82.5% and 100% of the termites were killed by the 10(6) and 10(8) treatments, respectively. I. fumosorosea did not repel termites at 10(6) nor 10(8) spores/g in sand, soil or sawdust. The fungus Metarhizium anisopliae at 10(8) spores/ml caused 57.5% mortality on day 7, 77.5% mortality on day 14 and 100% mortality on day 21.
Conclusions: On all three days the rate of mortality was significantly higher than that of the control and 10(6) spores/ml treatment with I. fumosorosea. Neither I. fumosorosea nor M. anisopliae caused repellency of FST in sand, soil or sawdust. The bacterium Bacillus thuringiensis did not cause significant mortality on days 7, 14 or 21. When termites were exposed to cells of B. thuringiensis in sawdust and when termites were exposed to a mixture of spores and cells in sand, a significantly higher number remained in the control tubes. Repellency was not seen with B. thuringiensis spores alone, nor with the above treatments in the other substrates.
C1 [Wright, Maureen S.] USDA, So Reg Res Ctr, New Orleans, LA 70179 USA.
[Cornelius, Mary L.] USDA, Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
RP Wright, MS (reprint author), USDA, So Reg Res Ctr, New Orleans, LA 70179 USA.
EM Maureen.Wright@ARS.USDA.GOV
FU United States Department of Agriculture, Agricultural Research Service
FX This study was funded by the United States Department of Agriculture,
Agricultural Research Service. The authors wish to thank Bridgette
Duplantis, Erin Lathrop and Christopher Florane for technical
assistance.
NR 23
TC 3
Z9 3
U1 0
U2 28
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2180
J9 BMC MICROBIOL
JI BMC Microbiol.
PD DEC 15
PY 2012
VL 12
AR 291
DI 10.1186/1471-2180-12-291
PG 7
WC Microbiology
SC Microbiology
GA 079FA
UT WOS:000314154700001
PM 23241169
ER
PT J
AU Royo, AA
Knight, KS
AF Royo, Alejandro A.
Knight, Kathleen S.
TI White ash (Fraxinus americana) decline and mortality: The role of site
nutrition and stress history
SO FOREST ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Dieback; Health; Magnesium; Calcium; Defoliation
ID NORTHEASTERN UNITED-STATES; SUGAR MAPLE HEALTH; ALLEGHENY PLATEAU;
FOREST ECOSYSTEMS; TEMPERATE FORESTS; SOIL INTERACTIONS; CROWN
CONDITION; CANOPY TREE; DIEBACK; GROWTH
AB Over the past century, white ash (Fraxinus americana) populations throughout its range have deteriorated as a result of declining tree health and increased mortality rates. Although co-occurring factors including site nutritional deficiencies and punctuated stress events (e.g., defoliations, drought) are hypothesized to trigger white ash decline, there are no empirical assessments of these factors at regional scales. In this study, we evaluated ash crown dieback, crown health condition, and mortality on 190 plots paired along a topographic gradient known to differ in site nutrition across a 3000 km(2) area of northwestern Pennsylvania, USA. Additionally, we assessed white ash foliar nutrient content and additional factors including defoliation history as potential explanatory variables at all sites. White ash populations on upper slopes consistently had significantly greater dieback, poorer crown condition, and greater mortality than populations in paired plots on lower slopes. Despite nearly two decades since the last major elm spanworm defoliation, this stressor further amplified the differences in health and mortality seen between slope positions. On the relatively cation deficient upper slope positions, crown dieback and crown condition improved with increasing foliar cation (Ca2+, Mg2+) concentration. Our results indicate that white ash health is strongly influenced by site nutrition, and defoliation can trigger declines in cation-deficient sites. Knowledge of how landscape position and nutrition influence white ash health may alter management responses to insect outbreak events. Published by Elsevier B.V.
C1 [Royo, Alejandro A.] US Forest Serv, USDA, No Res Stn, Irvine, PA 16365 USA.
[Knight, Kathleen S.] US Forest Serv, USDA, No Res Stn, Delaware, OH USA.
RP Royo, AA (reprint author), US Forest Serv, USDA, No Res Stn, Irvine, PA 16365 USA.
EM aroyo@fs.fed.us
FU USDA Forest Service, Forest Health Monitoring Grant [NE-EM-09-02]; USDA
Forest Service Northern Research Station
FX This work was supported by the USDA Forest Service, Forest Health
Monitoring Grant NE-EM-09-02 and the USDA Forest Service Northern
Research Station. We thank A. Hille for assistance in identifying
potential sample locations, J. Stanovick for assistance with statistical
analysis and R. Long, S. Horsley, and S. Bigelow for conversations and
critiques that greatly improved this manuscript.
NR 67
TC 4
Z9 4
U1 15
U2 68
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1127
J9 FOREST ECOL MANAG
JI For. Ecol. Manage.
PD DEC 15
PY 2012
VL 286
BP 8
EP 15
DI 10.1016/j.foreco.2012.08.049
PG 8
WC Forestry
SC Forestry
GA 061BR
UT WOS:000312822600002
ER
PT J
AU Ostry, ME
Moore, MJ
Kern, CC
Venette, RC
Palik, BJ
AF Ostry, M. E.
Moore, M. J.
Kern, C. C.
Venette, R. C.
Palik, B. J.
TI Multiple diseases impact survival of pine species planted in red pine
stands harvested in spatially variable retention patterns
SO FOREST ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Pine management; Ecological forestry; Sirococcus; Diplodia; Cronartium
quercuum f. sp banksianae; Armillaria
ID SPHAEROPSIS-SAPINEA; DIPLODIA-PINEA; CRONARTIUM-QUERCUUM; SHOOT BLIGHT;
JACK PINES; MINNESOTA; SEEDLINGS; INOCULUM; PLANTATIONS; PERSISTENCE
AB Increasing the diversity of species and structure of red pine (Pious resinosa) is often a management goal in stands simplified by practices such as fire suppression and plantation management in many areas of the Great Lakes Region. One approach to diversification is to convert predominantly even-aged, pure red pine stands to multi-cohort, mixed-species forests through variable overstory retention at harvest. Based on limited empirical evidence, pathologists have advised against this multi-cohort approach in stands where pathogens causing damaging shoot blight diseases are established. We examined disease incidence among planted red, jack (Pious banksiana), and white pine (Pious strobus) in a variable retention harvest and understory woody vegetation removal (brushing) experiment in northern Minnesota. The experiment included four overstory treatments (dispersed and two aggregated overstory retention treatments and a control, N = 4) that were split by an understory brushing treatment (yes or no). Prior to harvest in 2003, the fungal pine pathogens Diplodia pinea, Sirococcus conigenus and Armillaria solidipes (syn. Armillaria ostoyae) were common on the study site. Within 6 years after harvest, these pathogens reduced the survival of planted red, white and jack pine, potentially interfering with long-term management objectives. Across all treatments, shoot blight incidence was generally higher in dead red and jack pine than white pine seedlings and was predominantly caused by D. pinea. The disease killing white pine seedlings was predominately Armillaria root rot. Overstory treatment affected the percentage of jack and white pine seedling mortality attributable to shoot blight, but not the more susceptible red pine, with greater overstory retention resulting in greater disease incidence. Understory brushing had no effect on the incidence of shoot blight on seedlings. We expect disease to continue to influence stand structure and composition across all treatments. Our study results highlight the need for forest managers to assess long-term risk of potentially damaging pathogens in red pine stands prior to harvest and use that information to guide decisions regarding silvicultural practices to increase age and species diversity. Published by Elsevier B.V.
C1 [Ostry, M. E.; Moore, M. J.; Venette, R. C.] US Forest Serv, USDA, No Res Stn, St Paul, MN 55108 USA.
[Kern, C. C.; Palik, B. J.] US Forest Serv, USDA, No Res Stn, Grand Rapids, MN 55744 USA.
RP Ostry, ME (reprint author), US Forest Serv, USDA, No Res Stn, 1561 Lindig St, St Paul, MN 55108 USA.
EM mostry@fs.fed.us
NR 35
TC 6
Z9 6
U1 1
U2 37
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1127
J9 FOREST ECOL MANAG
JI For. Ecol. Manage.
PD DEC 15
PY 2012
VL 286
BP 66
EP 72
DI 10.1016/j.foreco.2012.08.017
PG 7
WC Forestry
SC Forestry
GA 061BR
UT WOS:000312822600008
ER
PT J
AU Hutchinson, TF
Yaussy, DA
Long, RP
Rebbeck, J
Sutherland, EK
AF Hutchinson, Todd F.
Yaussy, Daniel A.
Long, Robert P.
Rebbeck, Joanne
Sutherland, Elaine Kennedy
TI Long-term (13-year) effects of repeated prescribed fires on stand
structure and tree regeneration in mixed-oak forests
SO FOREST ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Fire; Quercus; Acer; Structure; Regeneration; Competition
ID CENTRAL HARDWOOD REGION; NORTHERN RED; SHELTERWOOD STANDS; HICKORY
FORESTS; QUERCUS-RUBRA; UPLAND OAK; SEEDLINGS; OHIO; HISTORY; GROWTH
AB The survival and growth of oak advance regeneration is often limited by shade-tolerant species that are abundant in the understory of oak stands. Evidence of historic burning has prompted the use of prescribed fire as a tool to improve the competitive status of oak regeneration in mature stands. A primary shortfall of fire effects research in oak forests has been a lack of long-term studies on the effects of multiple fires. Here we describe the effects of repeated fires on stand structure and tree regeneration over a 13-year period in mature mixed-oak forests located in southern Ohio, USA. Three stands were burned 3-5 times from 1996 to 2005 with low-intensity dormant-season fires, and two stands remained unburned. Woody vegetation was sampled periodically on nine 0.125 ha plots per stand. Plots were located across the upland landscape and were characterized by an Integrated Moisture Index. Fire altered stand structure by reducing the density of large saplings (3.0-9.9 cm DBH) and midstory trees (10-25 cm DBH) by 76% and 34%, respectively. Fire had little impact on trees >25 cm DBH. Small saplings (1.4 m tall to 2.9 cm DBH) were dynamic over time on dry plots that were burned. After being repeatedly topkilled from year 1-8, the small sapling layer had redeveloped on dry burned plots by year 13 and species composition had shifted from dominance by shade-tolerant species to a more equal distribution of shade-tolerants, oaks + hickories, and sassafras. The density of oak + hickory and sassafras advance regeneration (stems 30 cm tall to 2.9 cm DBH) was significantly greater on burned plots than on unburned plots in year 13, though variability among plots was high. Advance regeneration of shade-tolerant species was equally abundant on burned and unburned plots. Density of oak + hickory advance regeneration in year 13 was positively related to its weighted frequency (a surrogate for size and abundance) in year 0 (r(2) = 0.67, p < 0.0001) and inversely related to stand density (r(2) = 0.33, p < 0.0001) and canopy cover (r(2) = 0.31, p < 0.0001), both of which were reduced by fire. Although oak + hickory advance regeneration was more abundant on burned plots, we conclude that other methods (e.g., herbicide, partial cutting) are necessary to further reduce stand density and promote the development of larger oak + hickory regeneration, particularly on mesic sites. Published by Elsevier B.V.
C1 [Hutchinson, Todd F.; Yaussy, Daniel A.; Rebbeck, Joanne] US Forest Serv, USDA, No Res Stn, Delaware, OH 43015 USA.
[Long, Robert P.] US Forest Serv, USDA, No Res Stn, Irvine, PA 16329 USA.
[Sutherland, Elaine Kennedy] US Forest Serv, USDA, Rocky Mt Res Stn, Missoula, MT 59807 USA.
RP Hutchinson, TF (reprint author), US Forest Serv, USDA, No Res Stn, Delaware, OH 43015 USA.
EM thutchinson@fs.fed.us
OI Yaussy, Daniel/0000-0003-1127-7809
FU Washington Office of the USDA Forest Service; Northern Research Station,
USDA Forest Service
FX We thank William Borovicka, David Hosack, and Levi Miller for leading
the field data collection; Richard Craig, Zachary Moor, and Jonathan
Schaeffer provided field assistance. We thank Joan Jolliff for entering
the data and Timothy Fox for processing hemispheric photographs and
map-making (Fig. 1). We thank Patrick Brose, John Kabrick, Cynthia
Moser, and two anonymous reviewers for suggestions on previous drafts.
We thank John Stanovick for statistical consultation. We thank our land
management partner, the Ohio Division of Forestry, owner of the Vinton
Furnace State Experimental Forest. The original funding was provided by
the Washington Office of the USDA Forest Service. Additional support for
this study was provided by the Northern Research Station, USDA Forest
Service.
NR 66
TC 16
Z9 16
U1 3
U2 74
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1127
J9 FOREST ECOL MANAG
JI For. Ecol. Manage.
PD DEC 15
PY 2012
VL 286
BP 87
EP 100
DI 10.1016/j.foreco.2012.08.036
PG 14
WC Forestry
SC Forestry
GA 061BR
UT WOS:000312822600011
ER
PT J
AU White, KP
Coleman, M
Page-Dumroese, DS
Gessler, PE
Kimsey, M
Shaw, T
AF White, Kevin P.
Coleman, Mark
Page-Dumroese, Deborah S.
Gessler, Paul E.
Kimsey, Mark
Shaw, Terry
TI Examining soil parent material influence over Douglas-fir stem growth
response to fertilization: Taking advantage of information from
spatiotemporally distributed experiments
SO FOREST ECOLOGY AND MANAGEMENT
LA English
DT Article
DE Screening trial experiments; Mixed models; Growth models; Model
selection; Inland Northwest; Precipitation
ID FOLIAR NUTRIENT; NITROGEN-FERTILIZATION; CALCIUM-CARBONATE;
COPRECIPITATION; EQUATIONS; DIAMETER; MODEL
AB Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco) in the Inland Northwest region of the USA are nitrogen (N) deficient; however stem growth responses to N fertilizers are unpredictable, which may be due to poor accounting of other limiting nutrients. Screening trial experiments, including potassium (K), sulfur (S), and boron (B) multiple nutrient treatments, have been conducted to learn about Douglas-fir nutritional status and fertilizer growth response. The data from the screening trial experiments were compiled to test whether the soil parent materials of the region could be used to predict nutritional status. Estimating effects of fertilizers and soil parent materials on Douglas-fir growth from compilations of such experiments, however, poses challenges and opportunity; experiments clustered in time and space introduce latent variables that drive between-site variation. We used a two-stage modeling approach to efficiently take advantage of the information in these data. First, we employed a mixed model approach to test the primary hypothesis of soil parent material influence upon stem growth response to fertilizer. As the second-stage to the analysis, the predicted random effects estimated from the mixed model were used as a response variable to test how strongly precipitation drives between-site variation. As expected, including the random site effect significantly improved the model fit of the growth model (Lambda = 436.5, P < 0.0001). The full mixed model accounted for 85% of the variation in the growth data (R-2 = 0.85) and revealed an interaction between fertilizer treatment and soil parent material class (P = 0.0179). Post hoc analysis suggested that Douglas-fir growing on loessal soils are not constrained by K, S, or B, but no general consistency was apparent with tephra or underlying geology. The second stage modeling suggested that winter precipitation explains variation in predicted random site effects (r(2) = 0.23), and hence the growth difference, better than total precipitation. Also, the annual lag precipitation explains variation in predicted random effects comparably well (r(2) = 0.22). (C) 2012 Elsevier B.V. All rights reserved.
C1 [White, Kevin P.; Coleman, Mark; Gessler, Paul E.; Kimsey, Mark; Shaw, Terry] Univ Idaho, Dept Forest Rangeland & Fire Sci, Moscow, ID 83843 USA.
[White, Kevin P.] Univ Idaho, Dept Stat Sci, Moscow, ID 83843 USA.
[Page-Dumroese, Deborah S.] US Forest Serv, USDA, Rocky Mt Res Stn, Moscow, ID 83843 USA.
RP White, KP (reprint author), Univ Idaho, Dept Forest Rangeland & Fire Sci, Moscow, ID 83843 USA.
EM p.kevin.white@gmail.com
RI Coleman, Mark/A-6741-2013
FU United States Department of Agriculture Forestry Service
[08-JV-11221633-201]; Potlatch Forest Holdings; Boise Cascade
Corporation
FX We would like to thank the Intermountain Forest Tree Nutrition
Cooperative members, employees and graduate students for their
contributions to field, laboratory, and organizational work that
contributed to the building of the database used in this study. Reed
Lewis, Idaho Geological Survey geologist, created the classification
scheme for the underlying geologic materials. This work was supported by
the United States Department of Agriculture Forestry Service Agenda 2020
(Grant Number 08-JV-11221633-201); Potlatch Forest Holdings; and Boise
Cascade Corporation. Thank you to Aaron Weiskittel for comments on an
earlier version of the manuscript, and to reviewers whose comments
greatly improved the paper's quality. This work would not have been
possible without the insight of John Mandzak and James Moore to
establish a set of screening trials throughout the Inland Northwest.
NR 29
TC 2
Z9 2
U1 3
U2 12
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1127
J9 FOREST ECOL MANAG
JI For. Ecol. Manage.
PD DEC 15
PY 2012
VL 286
BP 101
EP 107
DI 10.1016/j.foreco.2012.08.043
PG 7
WC Forestry
SC Forestry
GA 061BR
UT WOS:000312822600012
ER
PT J
AU Valles, SM
Strong, CA
Buss, EA
Oi, DH
AF Valles, Steven M.
Strong, Charles A.
Buss, Eileen A.
Oi, David H.
TI Non-enzymatic hydrolysis of RNA in workers of the ant Nylanderia pubens
SO JOURNAL OF INSECT SCIENCE
LA English
DT Article
DE Invasive species; nucleic acid degradation; RNA purification
ID CRAZY ANT; HYMENOPTERA; FORMICIDAE; RIBOZYMES
AB During preparation of total RNA from Nylanderia pubens (Forel) (Hymenoptera: Formicidae) workers for use in expression library construction, severe RNA degradation consistently occurred. This degradation was masked by spectrophotometric analysis but clearly evident by microfluidic-based assay. Although not specifically identified, the degrading entity was endogenous and localized to the abdomen (terminal abdominal segments) of adult ants. RNA degradation was not observed in preparations of larvae, non-melanized pupae, or eggs. Various RNase and protease inhibitors had no protective effect. However, the metal chelating agent ethylenediaminetetraacetic acid prevented RNA degradation and provides insight into the occurrence.
C1 [Valles, Steven M.; Strong, Charles A.; Oi, David H.] USDA ARS, Ctr Med Agr & Vet Entomol, Gainesville, FL 32604 USA.
[Buss, Eileen A.] Univ Florida, Dept Entomol & Nematol, Gainesville, FL 32611 USA.
RP Valles, SM (reprint author), USDA ARS, Ctr Med Agr & Vet Entomol, 1600 SW 23rd Dr, Gainesville, FL 32604 USA.
EM Steven.Valles@ars.usda.gov; Chuck.Strong@ars.usda.gov; eabuss@ufl.edu;
David.Oi@ars.usda.gov
NR 20
TC 2
Z9 2
U1 0
U2 6
PU UNIV ARIZONA
PI TUCSON
PA LIBRARY C327, TUCSON, AZ 85721 USA
SN 1536-2442
J9 J INSECT SCI
JI J Insect Sci.
PD DEC 15
PY 2012
VL 12
AR 146
PG 8
WC Entomology
SC Entomology
GA 058XK
UT WOS:000312668200001
PM 23461820
ER
PT J
AU Abdelwahab, MA
Martinelli, E
Alderighi, M
Fernandes, EG
Imam, S
Morelli, A
Chiellini, E
AF Abdelwahab, Mohamed A.
Martinelli, Elisa
Alderighi, Michele
Fernandes, Elizabeth Grillo
Imam, Syed
Morelli, Andrea
Chiellini, Emo
TI Poly[(R)-3-hydroxybutyrate)]/poly(styrene) blends compatibilized with
the relevant block copolymer
SO JOURNAL OF POLYMER SCIENCE PART A-POLYMER CHEMISTRY
LA English
DT Article
DE atom transfer radical polymerization (ATRP); blend compatibilization;
block copolymer; poly[(R)-3-hydroxybutyrate)]; polystyrene
ID CELLULOSE-ACETATE BUTYRATE; OXIDE) TRIBLOCK COPOLYMERS; BIODEGRADABLE
AMPHIPHILIC POLY(ETHYLENE; IMMISCIBLE POLYMER BLENDS;
LOW-MOLECULAR-WEIGHT; BACTERIAL POLY(3-HYDROXYBUTYRATE);
MECHANICAL-PROPERTIES; THERMAL-BEHAVIOR; BINARY BLENDS; CRYSTALLIZATION
BEHAVIOR
AB A novel triblock copolymer PSPHBPS based on the microbial polyester Poly[(R)-3-hydroxybutyrate)] (PHB) and poly(styrene) (PS) was prepared to be used as compatibilizer for the corresponding PHB/PS blends. It was prepared in a three-step procedure consisting of (i) transesterification reaction between ethylene glycol and a high-molecular-weight PHB, (ii) synthesis of bromo-terminated PHB macroinitiator, and (iii) atom transfer radical polymerization polymerization of styrene initiated by the PHB-based macroinitiator. Fourier transform infrared, gel permeation chromatography, 1H-, and 13C-NMR spectroscopies were used to determine the molecular structure and/or end-group functionalities at each step of the procedure. Although thermogravimetric analysis showed that the block copolymer underwent a stepwise thermal degradation and had better thermal stability than their respective homopolymers, differential scanning calorimetry displayed that the PHB block in the copolymer could not crystallize, and thus generating a total amorphous structure. Atomic force microscopy images indicated that the block copolymer was phase segregated in a well-defined morphological structure with nanodomain size of 40 nm. Contact angle measurements proved that the wettability properties of the block copolymer were in between those of the PHB and PS homopolymers. Blends analyzed for their morphology and thermal properties showed good miscibility and had well-defined morphological features. Polymer blends exhibited lower crystallinity and decreased stiffness which was proportional to the amount of compatibilizer content in the blends. (C) 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012
C1 [Abdelwahab, Mohamed A.; Martinelli, Elisa; Alderighi, Michele; Fernandes, Elizabeth Grillo; Morelli, Andrea; Chiellini, Emo] Univ Pisa, Lab Bioact Polymer Mat Biomed & Environm Applicat, UdR INSTM, Dept Chem & Ind Chem, I-56126 Pisa, Italy.
[Imam, Syed] ARS, USDA, Albany, CA 94710 USA.
RP Chiellini, E (reprint author), Univ Pisa, Lab Bioact Polymer Mat Biomed & Environm Applicat, UdR INSTM, Dept Chem & Ind Chem, I-56126 Pisa, Italy.
EM emochie@dcci.unipi.it
RI Fernandes, Elizabeth/I-6736-2013; Grillo Fernandes,
Elizabeth/B-6084-2016
OI Grillo Fernandes, Elizabeth/0000-0003-4830-1286
FU EC [FP7-245084]
FX The results at the basis of the present article have been attained in
the implementation of the work performed within the Framework of the
EC-Funded Project Animpol-Grant Agreement FP7-245084.
NR 84
TC 7
Z9 8
U1 0
U2 50
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0887-624X
J9 J POLYM SCI POL CHEM
JI J. Polym. Sci. Pol. Chem.
PD DEC 15
PY 2012
VL 50
IS 24
BP 5151
EP 5160
DI 10.1002/pola.26358
PG 10
WC Polymer Science
SC Polymer Science
GA 037LO
UT WOS:000311106400018
ER
PT J
AU Comuzzie, AG
Cole, SA
Laston, SL
Voruganti, VS
Haack, K
Gibbs, RA
Butte, NF
AF Comuzzie, Anthony G.
Cole, Shelley A.
Laston, Sandra L.
Voruganti, V. Saroja
Haack, Karin
Gibbs, Richard A.
Butte, Nancy F.
TI Novel Genetic Loci Identified for the Pathophysiology of Childhood
Obesity in the Hispanic Population
SO PLOS ONE
LA English
DT Article
ID VIVA LA FAMILIA; QUANTITATIVE TRAIT LOCUS; GENOME-WIDE ASSOCIATION;
FASTING GLUCOSE-LEVELS; BODY-MASS INDEX; XERODERMA-PIGMENTOSUM; EUROPEAN
POPULATIONS; PHYSICAL-ACTIVITY; ENERGY-BALANCE; CHILDREN
AB Genetic variants responsible for susceptibility to obesity and its comorbidities among Hispanic children have not been identified. The VIVA LA FAMILIA Study was designed to genetically map childhood obesity and associated biological processes in the Hispanic population. A genome-wide association study (GWAS) entailed genotyping 1.1 million single nucleotide polymorphisms (SNPs) using the Illumina Infinium technology in 815 children. Measured genotype analysis was performed between genetic markers and obesity-related traits i.e., anthropometry, body composition, growth, metabolites, hormones, inflammation, diet, energy expenditure, substrate utilization and physical activity. Identified genome-wide significant loci: 1) corroborated genes implicated in other studies (MTNR1B, ZNF259/APOA5, XPA/FOXE1 (TTF-2), DARC, CCR3, ABO); 2) localized novel genes in plausible biological pathways (PCSK2, ARHGAP11A, CHRNA3); and 3) revealed novel genes with unknown function in obesity pathogenesis (MATK, COL4A1). Salient findings include a nonsynonymous SNP (rs1056513) in INADL (p = 1.2E-07) for weight; an intronic variant in MTNR1B associated with fasting glucose (p = 3.7E-08); variants in the APOA5-ZNF259 region associated with triglycerides (p = 2.5-4.8E-08); an intronic variant in PCSK2 associated with total antioxidants (p = 7.6E-08); a block of 23 SNPs in XPA/FOXE1 (TTF-2) associated with serum TSH (p = 5.5E-08 to 1.0E-09); a nonsynonymous SNP (p = 1.3E-21), an intronic SNP (p = 3.6E-13) in DARC identified for MCP-1; an intronic variant in ARHGAP11A associated with sleep duration (p = 5.0E-08); and, after adjusting for body weight, variants in MATK for total energy expenditure (p = 2.7E-08) and in CHRNA3 for sleeping energy expenditure (p = 6.0E-08). Unprecedented phenotyping and high-density SNP genotyping enabled localization of novel genetic loci associated with the pathophysiology of childhood obesity.
C1 [Butte, Nancy F.] Baylor Coll Med, Dept Pediat, Childrens Nutr Res Ctr, USDA ARS, Houston, TX 77030 USA.
[Comuzzie, Anthony G.; Cole, Shelley A.; Laston, Sandra L.; Voruganti, V. Saroja; Haack, Karin] Texas Biomed Res Inst, Dept Genet, San Antonio, TX USA.
[Gibbs, Richard A.] Baylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, Houston, TX 77030 USA.
RP Butte, NF (reprint author), Baylor Coll Med, Dept Pediat, Childrens Nutr Res Ctr, USDA ARS, Houston, TX 77030 USA.
EM nbutte@bcm.edu
FU National Institutes of Health (NIH) [DK080457]; USDA/ARS
[6250-51000-053]; National Center for Research Resources, NIH [C06
RR013556, C06 RR017515]
FX This work was supported by grants from the National Institutes of Health
(NIH) (DK080457), and the USDA/ARS (Cooperative Agreement
6250-51000-053). Work performed at the Texas Biomedical Research
Institute in San Antonio, Texas was conducted in facilities constructed
with support from the Research Facilities Improvement Program of the
National Center for Research Resources, NIH (C06 RR013556, C06
RR017515). The funders had no role in study design, data collection and
analysis, decision to publish, or preparation of the manuscript.
NR 63
TC 91
Z9 92
U1 3
U2 14
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 14
PY 2012
VL 7
IS 12
AR e51954
DI 10.1371/journal.pone.0051954
PG 9
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 055AJ
UT WOS:000312386800116
PM 23251661
ER
PT J
AU Rogers, EE
Stenger, DC
AF Rogers, Elizabeth E.
Stenger, Drake C.
TI A Conjugative 38 kB Plasmid Is Present in Multiple Subspecies of Xylella
fastidiosa
SO PLOS ONE
LA English
DT Article
ID LEAF SCORCH DISEASE; PIERCES-DISEASE; GENOME SEQUENCES; IV SECRETION;
STRAINS; RECOMBINATION; DIVERSITY; BACTERIUM; CALIFORNIA; SYSTEMS
AB A similar to 38kB plasmid (pXF-RIV5) was present in the Riv5 strain of Xylella fastidiosa subsp. multiplex isolated from ornamental plum in southern California. The complete nucleotide sequence of pXF-RIV5 is almost identical to that of pXFAS01 from X. fastidiosa subsp. fastidiosa strain M23; the two plasmids vary at only 6 nucleotide positions. BLAST searches and phylogenetic analyses indicate pXF-RIV5 and pXFAS01 share some similarity to chromosomal and plasmid (pXF51) sequences of X. fastidiosa subsp. pauca strain 9a5c and more distant similarity to plasmids from a wide variety of bacteria. Both pXF-RIV5 and pXFAS01 encode homologues of a complete Type IV secretion system involved in conjugation and DNA transfer among bacteria. Mating pair formation proteins (Trb) from Yersinia pseudotuberculosis IP31758 are the mostly closely related non-X. fastidiosa proteins to most of the Trb proteins encoded by pXF-RIV5 and pXFAS01. Unlike many bacterial conjugative plasmids, pXF-RIV5 and pXFAS01 do not carry homologues of known accessory modules that confer selective advantage on host bacteria. However, both plasmids encode seven hypothetical proteins of unknown function and possess a small transposon-associated region encoding a putative transposase and associated factor. Vegetative replication of pXF-RIV5 and pXFAS01 appears to be under control of RepA protein and both plasmids have an origin of DNA replication (oriV) similar to that of pRP4 and pR751 from Escherichia coli. In contrast, conjugative plasmids commonly encode TrfA and have an oriV similar to those found in IncP-1 incompatibility group plasmids. The presence of nearly identical plasmids in single strains from two distinct subspecies of X. fastidiosa is indicative of recent horizontal transfer, probably subsequent to the introduction of subspecies fastidiosa to the United States in the late 19th century.
C1 [Rogers, Elizabeth E.; Stenger, Drake C.] USDA, ARS, Parlier, CA USA.
RP Rogers, EE (reprint author), USDA, ARS, Parlier, CA USA.
EM elizabeth.rogers@ars.usda.gov
RI Rogers, Elizabeth/D-2087-2009
OI Rogers, Elizabeth/0000-0002-0545-4744
FU United States Department of Agriculture [5302-22000-008-00D]
FX This study was supported by United States Department of Agriculture
Appropriated Project 5302-22000-008-00D. The funders had no role in
study design, data collection and analysis, decision to publish, or
preparation of the manuscript.
NR 29
TC 5
Z9 5
U1 3
U2 18
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 14
PY 2012
VL 7
IS 12
AR e52131
DI 10.1371/journal.pone.0052131
PG 9
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 055AJ
UT WOS:000312386800146
PM 23251694
ER
PT J
AU O'Neil, CE
Nicklas, TA
Rampersaud, GC
Fulgoni, VL
AF O'Neil, Carol E.
Nicklas, Theresa A.
Rampersaud, Gail C.
Fulgoni, Victor L., III
TI 100% Orange juice consumption is associated with better diet quality,
improved nutrient adequacy, decreased risk for obesity, and improved
biomarkers of health in adults: National Health and Nutrition
Examination Survey, 2003-2006
SO NUTRITION JOURNAL
LA English
DT Article
DE Orange juice consumption; 100% fruit juice consumption; Diet quality;
Nutrients; Nutrient adequacy; Adults; Weight; Obesity; Metabolic
syndrome; NHANES
ID PRESCHOOL-AGED CHILDREN; BODY-MASS INDEX; FRUIT JUICE;
HYPERCHOLESTEROLEMIC SUBJECTS; BEVERAGE CONSUMPTION; CITRUS FLAVONOIDS;
LIPID-METABOLISM; UNITED-STATES; WEIGHT STATUS; SHORT STATURE
AB Background: Consumption of 100% orange juice (OJ) has been positively associated with nutrient adequacy and diet quality, with no increased risk of overweight/obesity in children; however, no one has examined these factors in adults. The purpose of this study was to examine the association of 100% OJ consumption with nutrient adequacy, diet quality, and risk factors for metabolic syndrome (MetS) in a nationally representative sample of adults.
Methods: Data from adults 19+ years of age (n = 8,861) participating in the National Health and Nutrition Examination Survey 2003-2006 were used. The National Cancer Institute method was used to estimate the usual intake (UI) of 100% OJ consumption, selected nutrients, and food groups. Percentages of the population below the Estimated Average Requirement (EAR) or above the Adequate Intake (AI) were determined. Diet quality was measured by the Healthy Eating Index-2005 (HEI-2005). Covariate adjusted logistic regression was used to determine if consumers had a lower odds ratio of being overweight or obese or having risk factors of MetS or MetS.
Results: Usual per capita intake of 100% OJ was 50.3 ml/d. Among consumers (n = 2,310; 23.8%), UI was 210.0 ml/d. Compared to non-consumers, consumers had a higher (p < 0.05) percentage (% +/- SE) of the population meeting the EAR for vitamin A (39.7 +/- 2.5 vs 54.0 +/- 1.2), vitamin C (0.0 +/- 0.0 vs 59.0 +/- 1.4), folate (5.8 +/- 0.7 vs 15.1 +/- 0.9), and magnesium (51.6 +/- 1.6 vs 63.7 +/- 1.2). Consumers were also more likely to be above the AI for potassium (4.1 +/- 0.8 vs 1.8 +/- 0.2). HEI-2005 was significantly (p < 0.05) higher in consumers (55.0 +/- 0.4 vs 49.7 +/- 0.3). Consumers also had higher intakes of total fruit, fruit juice, whole fruit, and whole grain. Consumers had a lower (p < 0.05) mean body mass index (27.6 +/- 0.2 vs 28.5 +/- 0.1), total cholesterol levels (197.6 +/- 1.2 vs 200.8 +/- 0.75 mg/dL), and low density lipoprotein-cholesterol levels (112.5 +/- 1.4 vs 116.7 +/- 0.93 mg/dL). Finally, compared to non-consumers of 100% OJ, consumers were 21% less likely to be obese and male consumers were 36% less likely to have MetS.
Conclusion: The results suggest that moderate consumption of 100% OJ should be encouraged to help individuals meet the USDA daily recommendation for fruit intake and as a component of a healthy diet.
C1 [O'Neil, Carol E.] Louisiana State Univ, Ctr Agr, Baton Rouge, LA 70803 USA.
[Nicklas, Theresa A.] Baylor Coll Med, USDA, ARS, Childrens Nutr Res Ctr,Dept Pediat, Houston, TX 77030 USA.
[Rampersaud, Gail C.] Univ Florida, Food Sci & Human Nutr Dept, Gainesville, FL 32611 USA.
[Fulgoni, Victor L., III] Nutr Impact LLC, Battle Creek, MI 49014 USA.
RP O'Neil, CE (reprint author), Louisiana State Univ, Ctr Agr, 261 Knapp Hall, Baton Rouge, LA 70803 USA.
EM coneil1@lsu.edu
FU Florida Department of Citrus; USDA - Agricultural Research Service
[58-6250-6-003]; USDA Hatch Project [LAB 93951]
FX This work is a publication of the United States Department of
Agriculture (USDA/ARS) Children's Nutrition Research Center, Department
of Pediatrics, Baylor College of Medicine, Houston, Texas. The contents
of this publication do not necessarily reflect the views or policies of
the USDA, nor does mention of trade names, commercial products, or
organizations imply endorsement from the U.S. government. This research
project was supported by the Florida Department of Citrus, and USDA -
Agricultural Research Service through specific cooperative agreement
58-6250-6-003. Partial support was received from the USDA Hatch Project
LAB 93951.
NR 65
TC 27
Z9 28
U1 2
U2 27
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1475-2891
J9 NUTR J
JI Nutr. J.
PD DEC 12
PY 2012
VL 11
AR 107
DI 10.1186/1475-2891-11-107
PG 10
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA 084FG
UT WOS:000314522500001
PM 23234248
ER
PT J
AU Kim, SP
Moon, E
Nam, SH
Friedman, M
AF Kim, Sung Phil
Moon, Eunpyo
Nam, Seok Hyun
Friedman, Mendel
TI Composition of Herba Pogostemonis Water Extract and Protection of
Infected Mice against Salmonella Typhimurium-Induced Liver Damage and
Mortality by Stimulation of Innate Immune Cells
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE Herba Pogostemonis; composition; Salmonella typhimurium; antimicrobial;
mice; innate immune cells; liver damage prevention; immunostimulant
ID RICE HULL SMOKE; ANTIBACTERIAL ACTIVITIES; DENDRITIC CELLS; IN-VITRO;
D-ALLOSE; ALCOHOL; MACROPHAGE
AB GC-MS analysis of a hot water extract of Herba Pogostemonis (HP) revealed the presence of 131 compounds. HP slightly inhibited Salmonella Typhimurium bacteria in culture and stimulated uptake of the bacteria into RAW 264.7 murine macrophage cells as indicated by both increased fluorescence from internalized FITC-dextran and increased colony-forming unit (CFU) counts of the lysed macrophages. Postinfection, the HP-treated cells showed lower bacterial counts than the control. HP elicited altered morphology, elevated inducible NO synthase (iNOS) mRNA, and reduced pro-inflammatory cytokine expression in macrophage cells. Salmonella induced increased expression of iNOS mRNA, cognate polypeptides, and NO. Histology of mice infected with a sublethal dose (1 x 10(4) CPU) of Salmonella showed that intraperitoneally administered HP protected against necrosis of the liver, a biomarker of in vivo salmonellosis. The lifespan of mice infected with a lethal dose (1 X 10(5) CFU) was significantly extended. These results suggest that the activity of HP against bacterial infection in mice occurs through the activation of innate immune macrophage cells. The relationship of composition of HP to bioactivity is discussed.
C1 [Moon, Eunpyo; Nam, Seok Hyun] Ajou Univ, Dept Biol Sci, Suwon 443749, South Korea.
[Kim, Sung Phil] Ajou Univ, Dept Mol Sci & Technol, Suwon 443749, South Korea.
[Friedman, Mendel] ARS, Western Reg Res Ctr, USDA, Albany, CA 94710 USA.
RP Nam, SH (reprint author), Ajou Univ, Dept Biol Sci, Suwon 443749, South Korea.
EM shnam@ajou.ac.kr; Mendel.Friedman@ars.usda.gov
OI Friedman, Mendel/0000-0003-2582-7517
NR 33
TC 5
Z9 5
U1 0
U2 17
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD DEC 12
PY 2012
VL 60
IS 49
BP 12122
EP 12130
DI 10.1021/jf304466t
PG 9
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA 051JH
UT WOS:000312122000007
PM 23186318
ER
PT J
AU Amezquita-Lopez, BA
Quinones, B
Cooley, MB
Leon-Felix, J
Castro-del Campo, N
Mandrell, RE
Jimenez, M
Chaidez, C
AF Amezquita-Lopez, Bianca A.
Quinones, Beatriz
Cooley, Michael B.
Leon-Felix, Josefina
Castro-del Campo, Nohelia
Mandrell, Robert E.
Jimenez, Maribel
Chaidez, Cristobal
TI Genotypic Analyses of Shiga Toxin-Producing Escherichia coli O157 and
Non-O157 Recovered from Feces of Domestic Animals on Rural Farms in
Mexico
SO PLOS ONE
LA English
DT Article
ID HEMOLYTIC-UREMIC SYNDROME; TANDEM REPEAT ANALYSIS; VARIABLE-NUMBER;
IMMUNOMAGNETIC SEPARATION; VIRULENCE FACTORS; BEEF-CATTLE; SHEEP;
SEROTYPES; PREVALENCE; STRAINS
AB Shiga toxin-producing Escherichia coli (STEC) are zoonotic enteric pathogens associated with human gastroenteritis worldwide. Cattle and small ruminants are important animal reservoirs of STEC. The present study investigated animal reservoirs for STEC in small rural farms in the Culiacan Valley, an important agricultural region located in Northwest Mexico. A total of 240 fecal samples from domestic animals were collected from five sampling sites in the Culiacan Valley and were subjected to an enrichment protocol followed by either direct plating or immunomagnetic separation before plating on selective media. Serotype O157:H7 isolates with the virulence genes stx2, eae, and ehxA were identified in 40% (26/65) of the recovered isolates from cattle, sheep and chicken feces. Pulse-field gel electrophoresis (PFGE) analysis grouped most O157: H7 isolates into two clusters with 98.6% homology. The use of multiple-locus variable-number tandem repeat analysis (MLVA) differentiated isolates that were indistinguishable by PFGE. Analysis of the allelic diversity of MLVA loci suggested that the O157: H7 isolates from this region were highly related. In contrast to O157: H7 isolates, a greater genotypic diversity was observed in the non-O157 isolates, resulting in 23 PFGE types and 14 MLVA types. The relevant non-O157 serotypes O8:H19, O75:H8, O111:H8 and O146:H21 represented 35.4% (23/65) of the recovered isolates. In particular, 18.5% (12/65) of all the isolates were serotype O75: H8, which was the most variable serotype by both PFGE and MLVA. The non-O157 isolates were predominantly recovered from sheep and were identified to harbor either one or two stx genes. Most non-O157 isolates were ehxA-positive (86.5%, 32/37) but only 10.8% (4/37) harbored eae. These findings indicate that zoonotic STEC with genotypes associated with human illness are present in animals on small farms within rural communities in the Culiacan Valley and emphasize the need for the development of control measures to decrease risks associated with zoonotic STEC.
C1 [Amezquita-Lopez, Bianca A.; Leon-Felix, Josefina; Castro-del Campo, Nohelia; Chaidez, Cristobal] Ctr Invest Alimentac & Desarrollo, Culiacan, Sinaloa, Mexico.
[Quinones, Beatriz; Cooley, Michael B.; Mandrell, Robert E.] ARS, USDA, Produce Safety & Microbiol Res Unit, Western Reg Res Ctr, Albany, CA USA.
[Jimenez, Maribel] Univ Autonoma Sinaloa, Fac Ciencias Quim Biol, Culiacan, Sinaloa, Mexico.
RP Quinones, B (reprint author), Ctr Invest Alimentac & Desarrollo, Culiacan, Sinaloa, Mexico.
EM Beatriz.Quinones@ars.usda.gov; chaqui@ciad.edu.mx
FU U.S. Department of Agriculture, Agricultural Research Service CRIS
project [5325-42000-047]; The National Council of Science and Technology
in Mexico (CONACyT) [234885]
FX This work was supported by the U.S. Department of Agriculture,
Agricultural Research Service CRIS project number 5325-42000-047 and by
a Postgraduate Studies Scholarship from The National Council of Science
and Technology in Mexico (CONACyT grant #234885) to BAAL. The funders
had no role in study design, data collection and analysis, decision to
publish, or preparation of the manuscript.
NR 68
TC 15
Z9 15
U1 0
U2 11
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 10
PY 2012
VL 7
IS 12
AR e51565
DI 10.1371/journal.pone.0051565
PG 12
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 052ML
UT WOS:000312201900104
PM 23251577
ER
PT J
AU Gomez-Abellan, P
Diez-Noguera, A
Madrid, JA
Lujan, JA
Ordovas, JM
Garaulet, M
AF Gomez-Abellan, Purificacion
Diez-Noguera, Antoni
Madrid, Juan A.
Lujan, Juan A.
Ordovas, Jose M.
Garaulet, Marta
TI Glucocorticoids Affect 24 h Clock Genes Expression in Human Adipose
Tissue Explant Cultures
SO PLOS ONE
LA English
DT Article
ID BLOOD MONONUCLEAR-CELLS; METABOLIC SYNDROME; CIRCADIAN CLOCK; OBESITY;
ASSOCIATION; PATTERNS
AB Aims: to examine firstly whether CLOCK exhibits a circadian expression in human visceral (V) and subcutaneous (S) adipose tissue (AT) in vitro as compared with BMAL1 and PER2, and secondly to investigate the possible effect of the glucocorticoid analogue dexamethasone (DEX) on positive and negative clock genes expression.
Subjects and Methods: VAT and SAT biopsies were obtained from morbid obese women (body mass index >= 40 kg/m(2)) (n = 6). In order to investigate rhythmic expression pattern of clock genes and the effect of DEX on CLOCK, PER2 and BMAL1 expression, control AT (without DEX) and AT explants treated with DEX (2 hours) were cultured during 24 h and gene expression was analyzed at the following times: 10:00 h, 14:00 h, 18:00 h, 22:00 h, 02:00 h and 06:00 h, using qRT-PCR.
Results: CLOCK, BMAL1 and PER2 expression exhibited circadian patterns in both VAT and SAT explants that were adjusted to a typical 24 h sinusoidal curve. PER2 expression (negative element) was in antiphase with respect to CLOCK and in phase with BMAL1 expression (both positive elements) in the SAT (situation not present in VAT). A marked effect of DEX exposure on both positive and negative clock genes expression patterns was observed. Indeed, DEX treatment modified the rhythmicity pattern towards altered patterns with a period lower than 24 hours in all genes and in both tissues.
Conclusions: 24 h patterns in CLOCK and BMAL1 (positive clock elements) and PER2 (negative element) mRNA levels were observed in human adipose explants. These patterns were altered by dexamethasone exposure.
C1 [Gomez-Abellan, Purificacion; Madrid, Juan A.; Garaulet, Marta] Univ Murcia, Dept Physiol, Fac Biol, Murcia, Spain.
[Diez-Noguera, Antoni] Univ Barcelona, Dept Physiol, Fac Pharm, Barcelona, Spain.
[Lujan, Juan A.] Univ Hosp Virgen de la Arrixaca, Gen Surg Serv, Murcia, Spain.
[Ordovas, Jose M.] Tufts Univ, Nutr & Genom Lab, Jean Mayer USDA, Human Nutr Res Ctr, Boston, MA 02111 USA.
[Ordovas, Jose M.] Ctr Nacl Invest Cardiovasc CNIC, Dept Epidemiol, Madrid, Spain.
[Ordovas, Jose M.] Inst Madrileno Estudios Avanzados Alimentac IMDEA, Madrid, Spain.
RP Garaulet, M (reprint author), Univ Murcia, Dept Physiol, Fac Biol, Murcia, Spain.
EM garaulet@um.es
FU Tomas Pascual Foundation; Pilar Gomez-Cuetara Foundation; Spanish
Government of Science and Innovation [BFU2011-24720]; Seneca Foundation
from the Government of Murcia [15123/PI/10]; National Heart, Lung, and
Blood Institute [HL-54776]; National Institute of Diabetes and Digestive
and Kidney Diseases [DK075030]; United States Department of Agriculture
Research [53-K06-5-10, 58-1950-9-001]
FX This study was supported by grants from Tomas Pascual and Pilar
Gomez-Cuetara Foundations, Spanish Government of Science and Innovation
(BFU2011-24720), Seneca Foundation from the Government of Murcia
(15123/PI/10), National Heart, Lung, and Blood Institute grants
HL-54776, National Institute of Diabetes and Digestive and Kidney
Diseases, grant number DK075030 and by contracts 53-K06-5-10 and
58-1950-9-001 from the United States Department of Agriculture Research.
The funders had no role in study design, data collection and analysis,
decision to publish, or preparation of the manuscript.
NR 34
TC 21
Z9 21
U1 0
U2 17
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 10
PY 2012
VL 7
IS 12
AR e50435
DI 10.1371/journal.pone.0050435
PG 10
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 052ML
UT WOS:000312201900012
PM 23251369
ER
PT J
AU Chou, MY
Mau, RFL
Jang, EB
Vargas, RI
Pinero, JC
AF Chou, Ming-Yi
Mau, Ronald F. L.
Jang, Eric B.
Vargas, Roger I.
Pinero, Jaime C.
TI Morphological features of the ovaries during oogenesis of the Oriental
fruit fly, Bactrocera dorsalis, in relation to the physiological state
SO JOURNAL OF INSECT SCIENCE
LA English
DT Article
DE age; egg load; follicular relics; parity; physiological status
ID ANASTREPHA-SUSPENSA DIPTERA; FLIES DIPTERA; DACUS-DORSALIS; HOST FRUIT;
COMPARATIVE DEMOGRAPHY; BEHAVIORAL-RESPONSES; FORAGING BEHAVIOR; ADULT
INSECTS; MELON FLY; TEPHRITIDAE
AB Determination of physiological state in insects is useful in furthering the understanding of how insect behavior changes with age. Central to this determination is the identification of characters that allow assessment of physiological age. While non-destructive measures produce the most desired outcomes, internal markers may be more diagnostic and reliable. In this study, key morphological characters during previtellogenesis through vitellogenesis and ovulation were assessed as markers to determine physiological states of the oriental fruit fly, Bactrocera dorsalis (Hendel) (Diptera: Tephritidae). Ovary length and width, ovarian index (length x width), and egg load of laboratory-reared B. dorsalis females recorded daily from eclosion up to 80 days old suggested significant differences in the ovarian index and egg load between females from each oogenesis stage. Parity status determined by the presence of follicular relics was found to provide high-accuracy classifications for B. dorsalis females. The presence of follicular relics with distinct morphological features provides a reliable identification tool to determine the physiological state of wild female oriental fruit fly. The potential applications of this technique to identify the physiological age of female fruit flies to study behavioral attributes in their natural habitat, and also the potential applications in relation to field control, are discussed.
C1 [Chou, Ming-Yi; Mau, Ronald F. L.] Univ Hawaii Manoa, Coll Trop Agr & Human Resources, Honolulu, HI 96822 USA.
[Jang, Eric B.; Vargas, Roger I.] USDA ARS, US Pacific Basin Agr Res Ctr, Hilo, HI 96720 USA.
[Pinero, Jaime C.] Lincoln Univ Missouri, Jefferson City, MO 65102 USA.
RP Chou, MY (reprint author), Univ Hawaii Manoa, Coll Trop Agr & Human Resources, 3050 Maile Way, Honolulu, HI 96822 USA.
EM mingyi@hawaii.edu; maur@ctahr.hawaii.edu; eric.jang@.ars.usda.gov;
roger.vargas@ars.usda.gov; PineroJ@lincolnu.edu
FU USDA-ARS Area-Wide Pest Management funds
FX We thank A. Greenwell, A. Lee, and K. Hara from the University of Hawaii
at Manoa for important technical assistance. USDA-ARS Area-Wide Pest
Management funds were essential for completing this research. We
appreciate the valuable suggestions of Dr. L. Leblanc (University of
Hawaii at Manoa), and M. Diaz (USDA-ARS), and two anonymous referees to
earlier versions of this manuscript.
NR 45
TC 0
Z9 0
U1 2
U2 20
PU UNIV ARIZONA
PI TUCSON
PA LIBRARY C327, TUCSON, AZ 85721 USA
SN 1536-2442
J9 J INSECT SCI
JI J Insect Sci.
PD DEC 9
PY 2012
VL 12
AR 144
PG 12
WC Entomology
SC Entomology
GA 058XG
UT WOS:000312667800002
ER
PT J
AU Thontiravong, A
Kitikoon, P
Wannaratana, S
Tantilertcharoen, R
Tuanudom, R
Pakpinyo, S
Sasipreeyajan, J
Oraveerakul, K
Amonsin, A
AF Thontiravong, Aunyaratana
Kitikoon, Pravina
Wannaratana, Suwarak
Tantilertcharoen, Rachod
Tuanudom, Ranida
Pakpinyo, Somsak
Sasipreeyajan, Jiroj
Oraveerakul, Kanisak
Amonsin, Alongkorn
TI Quail as a potential mixing vessel for the generation of new reassortant
influenza A viruses
SO VETERINARY MICROBIOLOGY
LA English
DT Article
DE Quail; Genetic reassortment; Co-infection; Influenza
ID PANDEMIC H1N1 2009; SWINE-ORIGIN H1N1; UNITED-STATES; INTERSPECIES
TRANSMISSION; INCREASED PATHOGENICITY; GENETIC COMPATIBILITY; AVIAN
H5N1; PIGS; EMERGENCE; THAILAND
AB Quail has been proposed as one of the intermediate hosts supporting the generation of newly reassortant influenza A viruses (IAVs) with the potential to infect humans. To evaluate the role of quail as an intermediate host of IAVs, co-infections of quail with swine-origin pandemic H1N1 2009 (pH1N1) and low pathogenic avian influenza (LPAI) duck H3N2 (dkH3N2) viruses (n = 10) or endemic Thai swine H1N1 (swH1N1) and dkH3N2 viruses (n = 10) were conducted. Three additional groups of five quail were each inoculated with pH1N1, swH1N1 and dkH3N2 as control groups to verify that each virus can infect quail. Our result showed that co-infected quail shed higher viral titers from the respiratory tract than single virus infected quail. This study confirmed that reassortant viruses could be readily generated in the respiratory tract of quail from both the pH1N1/dkH3N2 co-infected group (100% of quail generating reassortant viruses) and the swH1N1/dkH3N2 (33% of quail generating reassortant viruses) co-infected group without discernible clinical signs. The reassortment efficacy between the two combination of viruses was different in that the frequency of reassortant viruses was significantly higher in pH1N1/dkH3N2 co-infected quail (21.4%) compared to swH1N1/dkH3N2 co-infected quail (0.8%), indicating that gene combinations in pH1N1 have a higher potential to reassort with dkH3N2 compared to swH1N1. In summary, our result confirmed that quail could be an intermediate host of IAVs for generating new reassortant viruses. Our finding highlights the importance of monitoring IAVs especially pH1N1 in quail. (C) 2012 Elsevier B.V. All rights reserved.
C1 [Amonsin, Alongkorn] Chulalongkorn Univ, Fac Vet Sci, Dept Vet Publ Hlth, Bangkok 10330, Thailand.
[Tuanudom, Ranida; Oraveerakul, Kanisak] Chulalongkorn Univ, Fac Vet Sci, Dept Vet Pathol, Bangkok 10330, Thailand.
[Thontiravong, Aunyaratana] Chulalongkorn Univ, Fac Grad Sch, Interdept Biomed Sci, Bangkok 10330, Thailand.
[Kitikoon, Pravina] USDA ARS, Virus & Pr Dis Res Unit, Natl Anim Dis Ctr, Ames, IA 50010 USA.
[Wannaratana, Suwarak; Pakpinyo, Somsak; Sasipreeyajan, Jiroj] Chulalongkorn Univ, Fac Vet Sci, Dept Vet Med, Bangkok 10330, Thailand.
[Tantilertcharoen, Rachod; Tuanudom, Ranida; Amonsin, Alongkorn] Chulalongkorn Univ, Fac Vet Sci, Res Unit, Emerging & Reemerging Infect Dis Anim CUEIDAs, Bangkok 10330, Thailand.
RP Amonsin, A (reprint author), Chulalongkorn Univ, Fac Vet Sci, Dept Vet Publ Hlth, Bangkok 10330, Thailand.
EM Alongkorn.A@chula.ac.th
OI Tantilertcharoen, Rachod/0000-0002-5465-8735
FU Rachadapiseksompoch Endowment Fund, Chulalongkorn University; National
Research Council of Thailand (NRCT, Thailand); Higher Education Research
promotion and National Research University Project of Thailand, Office
of the Higher Education Commission [HR1155A]
FX The authors would like to thank the entire staff in the Virology Unit
and Emerging and Re-emerging Infectious Diseases in Animals Research
Unit, Faculty of Veterinary Science, Chulalongkorn University for their
assistance with laboratory works. We would like to acknowledge Prof.
Roongroje Thanawongnuwech and Assoc. Prof. Thaweesak Songserm for their
contribution of the swine influenza viruses and the dkH3N2 virus,
respectively. This study has been funded by the Rachadapiseksompoch
Endowment Fund, Chulalongkorn University and the National Research
Council of Thailand (NRCT, Thailand) to AA. We would also like to thank
the Higher Education Research promotion and National Research University
Project of Thailand, Office of the Higher Education Commission (HR1155A)
for grant support to AA. We would like to thank Ms. Petra Hirsch for
reviewing the manuscript.
NR 46
TC 13
Z9 13
U1 0
U2 14
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-1135
J9 VET MICROBIOL
JI Vet. Microbiol.
PD DEC 7
PY 2012
VL 160
IS 3-4
BP 305
EP 313
DI 10.1016/j.vetmic.2012.05.043
PG 9
WC Microbiology; Veterinary Sciences
SC Microbiology; Veterinary Sciences
GA 059GL
UT WOS:000312692300004
PM 22763173
ER
PT J
AU Elbers, CC
Guo, YR
Tragante, V
van Iperen, EPA
Lanktree, MB
Castillo, BA
Chen, F
Yanek, LR
Wojczynski, MK
Li, YR
Ferwerda, B
Ballantyne, CM
Buxbaum, SG
Chen, YDI
Chen, WM
Cupples, LA
Cushman, M
Duan, YA
Duggan, D
Evans, MK
Fernandes, JK
Fornage, M
Garcia, M
Garvey, WT
Glazer, N
Gomez, F
Harris, TB
Halder, I
Howard, VJ
Keller, MF
Kamboh, MI
Kooperberg, C
Kritchevsky, SB
LaCroix, A
Liu, K
Liu, YM
Musunuru, K
Newman, AB
Onland-Moret, NC
Ordovas, J
Peter, I
Post, W
Redline, S
Reis, SE
Saxena, R
Schreiner, PJ
Volcik, KA
Wang, XB
Yusuf, S
Zonderland, AB
Anand, SS
Becker, DM
Psaty, B
Rader, DJ
Reiner, AP
Rich, SS
Rotter, JI
Sale, MM
Tsai, MY
Borecki, IB
Hegele, RA
Kathiresan, S
Nalls, MA
Taylor, HA
Hakonarson, H
Sivapalaratnam, S
Asselbergs, FW
Drenos, F
Wilson, JG
Keating, BJ
AF Elbers, Clara C.
Guo, Yiran
Tragante, Vinicius
van Iperen, Erik P. A.
Lanktree, Matthew B.
Castillo, Berta Almoguera
Chen, Fang
Yanek, Lisa R.
Wojczynski, Mary K.
Li, Yun R.
Ferwerda, Bart
Ballantyne, Christie M.
Buxbaum, Sarah G.
Chen, Yii-Der Ida
Chen, Wei-Min
Cupples, L. Adrienne
Cushman, Mary
Duan, Yanan
Duggan, David
Evans, Michele K.
Fernandes, Jyotika K.
Fornage, Myriam
Garcia, Melissa
Garvey, W. Timothy
Glazer, Nicole
Gomez, Felicia
Harris, Tamara B.
Halder, Indrani
Howard, Virginia J.
Keller, Margaux F.
Kamboh, M. Ilyas
Kooperberg, Charles
Kritchevsky, Stephen B.
LaCroix, Andrea
Liu, Kiang
Liu, Yongmei
Musunuru, Kiran
Newman, Anne B.
Onland-Moret, N. Charlotte
Ordovas, Jose
Peter, Inga
Post, Wendy
Redline, Susan
Reis, Steven E.
Saxena, Richa
Schreiner, Pamela J.
Volcik, Kelly A.
Wang, Xingbin
Yusuf, Salim
Zonderland, Alan B.
Anand, Sonia S.
Becker, Diane M.
Psaty, Bruce
Rader, Daniel J.
Reiner, Alex P.
Rich, Stephen S.
Rotter, Jerome I.
Sale, Michele M.
Tsai, Michael Y.
Borecki, Ingrid B.
Hegele, Robert A.
Kathiresan, Sekar
Nalls, Michael A.
Taylor, Herman A., Jr.
Hakonarson, Hakon
Sivapalaratnam, Suthesh
Asselbergs, Folkert W.
Drenos, Fotios
Wilson, James G.
Keating, Brendan J.
TI Gene-Centric Meta-Analysis of Lipid Traits in African, East Asian and
Hispanic Populations
SO PLOS ONE
LA English
DT Article
ID INTERCELLULAR-ADHESION MOLECULE-1; DENSITY-LIPOPROTEIN-CHOLESTEROL;
SINGLE-NUCLEOTIDE POLYMORPHISM; NUTRITION EXAMINATION SURVEY; 3RD
NATIONAL-HEALTH; CHAIN FATTY-ACIDS; METABOLIC SYNDROME; ASSOCIATION
RESOURCE; NATURAL-SELECTION; YOUNG-ADULTS
AB Meta-analyses of European populations has successfully identified genetic variants in over 100 loci associated with lipid levels, but our knowledge in other ethnicities remains limited. To address this, we performed dense genotyping of similar to 2,000 candidate genes in 7,657 African Americans, 1,315 Hispanics and 841 East Asians, using the IBC array, a custom similar to 50,000 SNP genotyping array. Meta-analyses confirmed 16 lipid loci previously established in European populations at genome-wide significance level, and found multiple independent association signals within these lipid loci. Initial discovery and in silico follow-up in 7,000 additional African American samples, confirmed two novel loci: rs5030359 within ICAM1 is associated with total cholesterol (TC) and low-density lipoprotein cholesterol (LDL-C) (p = 8.8x10(-7) and p = 1.5x10(-6) respectively) and a nonsense mutation rs3211938 within CD36 is associated with high-density lipoprotein cholesterol (HDL-C) levels (p = 13.5x10(-1)2). The rs3211938-G allele, which is nearly absent in European and Asian populations, has been previously found to be associated with CD36 deficiency and shows a signature of selection in Africans and African Americans. Finally, we have evaluated the effect of SNPs established in European populations on lipid levels in multi-ethnic populations and show that most known lipid association signals span across ethnicities. However, differences between populations, especially differences in allele frequency, can be leveraged to identify novel signals, as shown by the discovery of ICAM1 and CD36 in the current report.
C1 [Elbers, Clara C.; Ferwerda, Bart; Gomez, Felicia] Univ Penn, Sch Med, Dept Genet, Philadelphia, PA 19104 USA.
[Elbers, Clara C.; Tragante, Vinicius; Onland-Moret, N. Charlotte; Asselbergs, Folkert W.] Univ Med Ctr, Dept Med Genet, Utrecht, Netherlands.
[Elbers, Clara C.; Onland-Moret, N. Charlotte; Asselbergs, Folkert W.] Univ Med Ctr Utrecht, Julius Ctr Hlth Sci & Primary Care, Utrecht, Netherlands.
[Guo, Yiran; Castillo, Berta Almoguera; Li, Yun R.; Hakonarson, Hakon; Keating, Brendan J.] Childrens Hosp Philadelphia, Abramson Res Ctr, Ctr Appl Gen, Philadelphia, PA 19104 USA.
[Guo, Yiran] BGI Shenzhen, Shenzhen, Peoples R China.
[Tragante, Vinicius; Asselbergs, Folkert W.] Univ Med Ctr Utrecht, Div Heart & Lungs, Dept Cardiol, Utrecht, Netherlands.
[van Iperen, Erik P. A.] Univ Amsterdam, Acad Med Ctr, Dept Clin Epidemiol Biostat & Bioinformat, NL-1105 AZ Amsterdam, Netherlands.
[Lanktree, Matthew B.] Univ Western Ontario, Dept Med, Schulich Sch Med & Dent, London, ON, Canada.
[Lanktree, Matthew B.] Univ Western Ontario, Dept Biochem, Schulich Sch Med & Dent, London, ON, Canada.
[Chen, Fang; Chen, Wei-Min; Rich, Stephen S.; Sale, Michele M.] Univ Virginia, Ctr Publ Hlth Genom, Charlottesville, VA USA.
[Yanek, Lisa R.; Becker, Diane M.] Johns Hopkins Sch Med, GeneSTAR Res Program, Div Gen Internal Med, Baltimore, MD USA.
[Wojczynski, Mary K.] Univ Alabama Birmingham, Dept Biostat, Birmingham, AL 35294 USA.
[Ballantyne, Christie M.] Baylor Coll Med, Houston, TX 77030 USA.
[Buxbaum, Sarah G.] Jackson State Univ, Jackson Heart Study, Jackson, MS USA.
[Chen, Yii-Der Ida; Rotter, Jerome I.] Cedars Sinai Med Ctr, Inst Med Genet, Los Angeles, CA 90048 USA.
[Chen, Wei-Min] Univ Virginia, Dept Publ Hlth Sci, Charlottesville, VA USA.
[Cupples, L. Adrienne; Glazer, Nicole] Boston Univ, Boston, MA 02215 USA.
[Cupples, L. Adrienne] NHLBI, Framingham Heart Study, Framingham, MA USA.
[Wojczynski, Mary K.; Duan, Yanan; Borecki, Ingrid B.] Washington Univ, Sch Med, Div Stat Genom, St Louis, MO USA.
[Wojczynski, Mary K.; Duan, Yanan; Borecki, Ingrid B.] Washington Univ, Sch Med, Dept Genet, St Louis, MO 63110 USA.
[Duggan, David] Translat Genom Res Inst, Phoenix, AZ USA.
[Garcia, Melissa; Harris, Tamara B.] NIA, Lab Epidemiol Demog & Biometry, NIH, Bethesda, MD 20892 USA.
[Reis, Steven E.] Univ Pittsburgh, Sch Med, Pittsburgh, PA USA.
[Kooperberg, Charles; LaCroix, Andrea; Reiner, Alex P.] Fred Hutchinson Canc Res Ctr, Div Publ Hlth Sci, Seattle, WA 98104 USA.
[Kritchevsky, Stephen B.] Univ Tennessee, Ctr Hlth Sci, Dept Prevent Med, Memphis, TN 38163 USA.
[Kritchevsky, Stephen B.] Wake Forest Univ, Sticht Ctr Aging, Winston Salem, NC 27109 USA.
[Liu, Kiang] Northwestern Univ, Dept Prevent Med, Feinberg Sch Med, Chicago, IL 60611 USA.
[Liu, Yongmei] Wake Forest Univ, Div Publ Hlth Sci, Dept Epidemiol & Prevent, Winston Salem, NC 27109 USA.
[Kamboh, M. Ilyas; Wang, Xingbin] Univ Pittsburgh, Dept Human Genet, Pittsburgh, PA USA.
[Newman, Anne B.] Univ Pittsburgh, Dept Epidemiol, Pittsburgh, PA 15261 USA.
[Ordovas, Jose] Tufts Univ, JM USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Peter, Inga] Mt Sinai Sch Med, Dept Genet & Genom Sci, New York, NY USA.
[Post, Wendy] Johns Hopkins Univ, Dept Med, Div Cardiol, Baltimore, MD USA.
[Redline, Susan] Brigham & Womens Hosp, Boston, MA 02115 USA.
[Redline, Susan] Harvard Univ, Beth Israel Deaconess Med Ctr, Sch Med, Boston, MA 02215 USA.
[Saxena, Richa] Massachusetts Gen Hosp, Ctr Human Genet Res, Boston, MA 02114 USA.
[Saxena, Richa] Broad Inst, Program Med & Populat Genet, Cambridge, MA USA.
[Schreiner, Pamela J.] Univ Minnesota, Sch Publ Hlth, Minneapolis, MN USA.
[Volcik, Kelly A.] Univ Texas Hlth Sci Ctr Houston, Sch Publ Hlth, Ctr Human Genet, Div Epidemiol Human Genet & Environm Sci, Houston, TX USA.
[Yusuf, Salim; Anand, Sonia S.] McMaster Univ, Hamilton Hlth Sci, Populat Hlth Res Inst, Hamilton, ON, Canada.
[Psaty, Bruce] Univ Washington, Cardiovasc Hlth Res Unit, Dept Med, Seattle, WA 98195 USA.
[Psaty, Bruce] Univ Washington, Dept Epidemiol, Seattle, WA 98195 USA.
[Psaty, Bruce] Univ Washington, Dept Hlth Serv, Seattle, WA 98195 USA.
[Psaty, Bruce] Grp Hlth Cooperat Puget Sound, Grp Hlth Res Inst, Seattle, WA USA.
[Rader, Daniel J.] Univ Penn, Perelman Sch Med, Cardiovasc Inst, Philadelphia, PA USA.
[Sale, Michele M.] Univ Virginia, Dept Biochem & Mol Genet, Charlottesville, VA USA.
[Sale, Michele M.] Univ Virginia, Dept Med, Charlottesville, VA USA.
[Tsai, Michael Y.] Univ Minnesota, Dept Lab Med & Pathol, Minneapolis, MN 55455 USA.
[Hegele, Robert A.] Univ Western Ontario, Robarts Res Inst, London, ON, Canada.
[Keller, Margaux F.; Nalls, Michael A.] NIA, Neurogenet Lab, Intramural Res Program, NIH, Bethesda, MD 20892 USA.
[Taylor, Herman A., Jr.] Univ Mississippi, Med Ctr, Jackson, MS 39216 USA.
[Taylor, Herman A., Jr.] Jackson State Univ, Tougaloo Coll, Jackson, MS USA.
[Sivapalaratnam, Suthesh] Univ Amsterdam, Acad Med Ctr, Dept Vasc Med, NL-1105 AZ Amsterdam, Netherlands.
[Drenos, Fotios] UCL, Fac Populat Hlth Sci, Inst Cardiovasc Sci, Ctr Cardiovasc Genet, London, England.
[Wilson, James G.] Univ Mississippi, Med Ctr, Dept Physiol & Biophys, Jackson, MS 39216 USA.
[Cushman, Mary] Univ Vermont, Dept Med, Thrombosis & Hemostasis Program, Burlington, VT USA.
[Fernandes, Jyotika K.] Med Univ S Carolina, Coll Med, Div Endocrinol Diabet & Med Genet, Charleston, SC 29425 USA.
[Garvey, W. Timothy] Univ Alabama Birmingham, Dept Nutr Sci, Birmingham, AL 35294 USA.
[Howard, Virginia J.] Univ Alabama Birmingham, Dept Epidemiol, Birmingham, AL USA.
[Zonderland, Alan B.] NIA, Lab Personal & Cognit, NIH, Bethesda, MD 20892 USA.
[Evans, Michele K.] NIA, Hlth Dispar Unit, NIH, Baltimore, MD 21224 USA.
[Halder, Indrani] Univ Pittsburgh, Inst Heart & Vasc, Sch Med, Pittsburgh, PA USA.
[Buxbaum, Sarah G.] Jackson State Univ, Sch Hlth Sci, Dept Epidemiol & Biostat, Jackson, MS USA.
RP Elbers, CC (reprint author), Univ Penn, Sch Med, Dept Genet, Philadelphia, PA 19104 USA.
EM bkeating@mail.med.upenn.edu
RI Newman, Anne/C-6408-2013; Reis, Steven/J-3957-2014; Guo,
Yiran/H-4120-2011; Onland-Moret, N. Charlotte/G-9185-2011; Hegele,
Robert/G-3301-2011; Buxbaum, Sarah/E-1970-2013;
OI Newman, Anne/0000-0002-0106-1150; Guo, Yiran/0000-0002-6549-8589;
Buxbaum, Sarah/0000-0002-4886-3564; Cupples, L.
Adrienne/0000-0003-0273-7965; Kamboh, M. Ilyas/0000-0002-3453-1438;
Lanktree, Matthew/0000-0002-5750-6286; Kritchevsky,
Stephen/0000-0003-3336-6781; van Iperen, Erik/0000-0001-7107-3168
FU National Heart, Lung, and Blood Institute; Massachusetts Institute of
Technology - Broad Institute [N01-HC-65226]; Netherlands Organization
for Scientific Research (NWO); Netherlands Organisation for Health
Research and Development (ZonMw) [90700342]
FX The CARe Consortium wishes to acknowledge the support of the National
Heart, Lung, and Blood Institute and the contributions of the research
institutions, study investigators, field staff and study participants in
creating this resource for biomedical research. The following nine
parent studies have contributed parent study data, ancillary study data,
and DNA samples through the Massachusetts Institute of Technology -
Broad Institute (N01-HC-65226) to create this genotype/phenotype
database for wide dissemination to the biomedical research community:
the Atherosclerosis Risk in Communities (ARIC) study, the Cardiovascular
Health Study (CHS), the Cleveland Family Study (CFS), the Cooperative
Study of Sickle Cell Disease (CSSCD), the Coronary Artery Risk
Development in Young Adults (CARDIA) study, the Framingham Heart Study
(FHS), the Jackson Heart Study (JHS), the Multi-Ethnic Study of
Atherosclerosis (MESA), and the Sleep Heart Health Study (SHHS). C. C. E
is supported by a Rubicon grant from the Netherlands Organization for
Scientific Research (NWO). F. W. A. is supported by a clinical
fellowship from the Netherlands Organisation for Health Research and
Development (ZonMw grant 90700342). Additional funding information can
be found in the Supporting Information S1. The funders had no role in
study design, data collection and analysis, decision to publish, or
preparation of the manuscript.
NR 52
TC 16
Z9 16
U1 2
U2 21
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 7
PY 2012
VL 7
IS 12
AR e50198
DI 10.1371/journal.pone.0050198
PG 14
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 050OT
UT WOS:000312064100013
PM 23236364
ER
PT J
AU Zhou, Z
Neupane, M
Zhou, HR
Wu, DY
Chang, CC
Moustaid-Moussa, N
Claycombe, KJ
AF Zhou, Zhou
Neupane, Manish
Zhou, Hui Ren
Wu, Dayong
Chang, Chia-Cheng
Moustaid-Moussa, Naima
Claycombe, Kate J.
TI Leptin differentially regulate STAT3 activation in ob/ob mouse adipose
mesenchymal stem cells
SO NUTRITION & METABOLISM
LA English
DT Article
DE Obesity; Adipose stem cell; Leptin
ID NF-KAPPA-B; CHRONIC INFLAMMATION; INSULIN-RESISTANCE; IMMUNE-RESPONSES;
PROGENITOR CELLS; WEIGHT-LOSS; IN-VITRO; RECEPTOR; TISSUE; MICE
AB Background: Leptin-deficient ob/ob mice exhibit adipocyte hypertrophy and hyperplasia as well as elevated adipose tissue and systemic inflammation. Multipotent stem cells isolated from adult adipose tissue can differentiate into adipocytes ex vivo and thereby contribute toward increased adipocyte cell numbers, obesity, and inflamm ation. Currently, information is lacking regarding regulation of adipose stem cell numbers as well as leptin-induced inflammation and its signaling pathway in ob/ob mice.
Methods: Using leptin deficient ob/ob mice, we investigated whether leptin injection into ob/ob mice increases adipose stem cell numbers and adipose tissue inflammatory marker MCP-1 mRNA and secretion levels. We also determined leptin mediated signaling pathways in the adipose stem cells.
Results: We report here that adipose stem cell number is significantly increased following leptin injection in ob/ob mice and with treatment of isolated stem cells with leptin in vitro. Leptin also up-regulated MCP-1 secretion in a dose-and time-dependent manner. We further showed that increased MCP-1 mRNA levels were due to increased phosphorylation of Signal Transducer and Activator of Transcription 3 (STAT3) Ser727 but not STAT3 Tyr705 phosphorylation, suggesting differential regulation of MCP-1 gene expression under basal and leptin-stimulated conditions in adipose stem cells.
Conclusions: Taken together, these studies demonstrate that leptin increases adipose stem cell number and differentially activates STAT3 protein resulting in up-regulation of MCP-1 gene expression. Further studies of mechanisms mediating adipose stem cell hyperplasia and leptin signaling in obesity are warranted and may help identify novel anti-obesity target strategies.
C1 [Zhou, Zhou; Zhou, Hui Ren; Claycombe, Kate J.] Michigan State Univ, Dept Food Sci & Human Nutr, E Lansing, MI 48824 USA.
[Neupane, Manish] Michigan State Univ, Coll Vet Med, Comparat Med & Integrat Biol Grad Program, E Lansing, MI 48824 USA.
[Wu, Dayong] Tufts Univ, JM USDA HNRC, Nutr Immunol Lab, Boston, MA 02111 USA.
[Chang, Chia-Cheng] Michigan State Univ, Dept Pediat & Human Dev, E Lansing, MI 48824 USA.
[Moustaid-Moussa, Naima] Texas Tech Univ, Coll Human Sci, Lubbock, TX 79409 USA.
[Claycombe, Kate J.] USDA ARS, Grand Forks Human Nutr Res Ctr, Grand Forks, ND 58203 USA.
RP Claycombe, KJ (reprint author), Michigan State Univ, Dept Food Sci & Human Nutr, E Lansing, MI 48824 USA.
EM kate.claycombe@ars.usda.gov
NR 43
TC 11
Z9 11
U1 1
U2 12
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1743-7075
J9 NUTR METAB
JI Nutr. Metab.
PD DEC 5
PY 2012
VL 9
AR 109
DI 10.1186/1743-7075-9-109
PG 13
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA 084KW
UT WOS:000314539100001
PM 23216800
ER
PT J
AU Beck, JJ
Mahoney, NE
Cook, D
Gee, WS
AF Beck, John J.
Mahoney, Noreen E.
Cook, Daniel
Gee, Wai S.
TI Generation of the Volatile Spiroketals Conophthorin and Chalcogran by
Fungal Spores on Polyunsaturated Fatty Acids Common to Almonds and
Pistachios
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE Aspergillus; chalcogran; conophthorin; fatty acid; germination;
Penicillium; Rhizopus; spiroacetal; spiroketal; spore; volatile
ID BARK BEETLES; NAVEL ORANGEWORM; TREE NUTS; BIOSYNTHESIS; COMPONENTS;
PHEROMONE
AB The spiroketal (E)-conophthorin has recently been reported as a semiochemical of the navel orangeworm moth, a major insect pest of California pistachios and almonds. Conophthorin and the isomeric spiroketal chalcogran are most commonly known as semiochemicals of several scolytid beetles. Conophthorin is both an insect- and plant-produced semiochemical widely recognized as a nonhost plant volatile from the bark of several angiosperm species. Chalcogran is the principal aggregation pheromone component of the six-spined spruce bark beetle. Recent research has shown conophthorin is produced by almonds undergoing hull-split, and both spiroketals are produced by mechanically damaged almonds. To better understand the origin of these spiroketals, the volatile emissions of orchard fungal spores on fatty acids common to both pistachios and almonds were evaluated. The volatile emission for the first 13 days of spores placed on a fatty acid was monitored. The spores investigated were Aspergillus flavus (atoxigenic), A. flavus (toxigenic), Aspergillus niger, Aspergillus parasiticus, Penicillium glabrum, and Rhizopus stolonifer. The fatty acids used as growth media were palmitic, oleic, linoleic, and linolenic. Spores on linoleic acid produced both spiroketals, those on linolenic acid produced only chalcogran, and those on palmitic and oleic acid did not produce either spiroketal. This is the first report of the spiroketals conophthorin and chalcogran from a fungal source.
C1 [Beck, John J.; Mahoney, Noreen E.; Gee, Wai S.] ARS, Western Reg Res Ctr, USDA, Albany, CA 94710 USA.
[Cook, Daniel] ARS, Poisonous Plant Res Lab, USDA, Logan, UT 84341 USA.
RP Beck, JJ (reprint author), ARS, Western Reg Res Ctr, USDA, 800 Buchanan St, Albany, CA 94710 USA.
EM john.beck@ars.usda.gov
FU USDA-ARS CRIS Project [5325-42000-037-00D]; California Pistachio
Research Board [TFCA 5325-42000-037-07]; Almond Board of California
[TFCA 5325-42000-037-05]; California Department of Food and Agriculture
[5325-42000-037-13]
FX Research was conducted under USDA-ARS CRIS Project 5325-42000-037-00D,
TFCA 5325-42000-037-07 with the California Pistachio Research Board,
TFCA 5325-42000-037-05 with the Almond Board of California, and portions
of 5325-42000-037-13 with the California Department of Food and
Agriculture.
NR 26
TC 14
Z9 15
U1 0
U2 13
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD DEC 5
PY 2012
VL 60
IS 48
BP 11869
EP 11876
DI 10.1021/jf304157q
PG 8
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA 047VO
UT WOS:000311869800004
PM 23153034
ER
PT J
AU Gao, BY
Lu, YJ
Qin, F
Chen, P
Shi, HM
Charles, D
Yu, LL
AF Gao, Boyan
Lu, Yingjian
Qin, Fang
Chen, Pei
Shi, Haiming
Charles, Denys
Yu, Liangli (Lucy)
TI Differentiating Organic from Conventional Peppermints Using
Chromatographic and Flow Injection Mass Spectrometric (FIMS)
Fingerprints
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE HPLC fingerprint; flow injection; mass spectral fingerprint; principal
component analysis; peppermint (Mentha piperita); kaempferol
7-O-rutinoside
ID EXTRACTS; FOODS; MINT
AB High-performance liquid chromatography (HPLC) and flow injection mass spectrometric (FIMS) fingerprinting techniques were tested for their potential in differentiating organic and conventional peppermint samples. Ten organic and ten conventional peppermint samples were examined using HPLC-UV and FIMS methods. Principal component analysis (PCA) showed that both HPLC and FIMS fingerprints could determine the difference in the commercial organic and conventional peppermints. FIMS fingerprinting provided a rapid test to differentiate organic and conventional peppermints in 1 min of analysis and has potential for high-throughput applications. On the other hand, HPLC fingerprints provide more information about the chemical composition of the samples, but take a longer time to differentiate organic and conventional peppermint samples.
C1 [Gao, Boyan; Qin, Fang; Shi, Haiming; Yu, Liangli (Lucy)] Shanghai Jiao Tong Univ, Inst Food & Nutraceut Sci, Key Lab Urban Agr S, Sch Agr & Biol, Shanghai 200030, Peoples R China.
[Gao, Boyan; Lu, Yingjian; Yu, Liangli (Lucy)] Univ Maryland, Dept Nutr & Food Sci, College Pk, MD 20742 USA.
[Chen, Pei] ARS, Food Composit & Methods Dev Lab, Beltsville Human Nutr Res Ctr, USDA, Beltsville, MD 20705 USA.
[Charles, Denys] Frontier Nat Prod Coop, Norway, IA 52318 USA.
RP Yu, LL (reprint author), Shanghai Jiao Tong Univ, Inst Food & Nutraceut Sci, Key Lab Urban Agr S, Sch Agr & Biol, Shanghai 200030, Peoples R China.
EM lyu5@umd.edu
RI shi, haiming/D-2806-2015; Gao, Boyan/N-9851-2016
FU SJTU 985-III disciplines platform and talent fund [TS0414115001,
TS0320215001]; special fund for Agro-scientific Research in the Public
Interest [201203069]; Agricultural Research Service of the U.S.
Department of Agriculture; Frontier Natural Products Co-op (Norway, IA,
USA); Office of Dietary Supplements of the National Institutes of Health
FX This research was partially supported by SJTU 985-III disciplines
platform and talent fund (Grants TS0414115001; TS0320215001), a special
fund for Agro-scientific Research in the Public Interest (Grant
201203069), and a research gift from the Frontier Natural Products Co-op
(Norway, IA, USA). This research is also supported by the Agricultural
Research Service of the U.S. Department of Agriculture and an
Interagency Agreement with the Office of Dietary Supplements of the
National Institutes of Health.
NR 12
TC 9
Z9 9
U1 4
U2 26
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
EI 1520-5118
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD DEC 5
PY 2012
VL 60
IS 48
BP 11987
EP 11994
DI 10.1021/jf303415d
PG 8
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
Technology
SC Agriculture; Chemistry; Food Science & Technology
GA 047VO
UT WOS:000311869800018
PM 23150895
ER
PT J
AU Cheung, AK
AF Cheung, Andrew K.
TI Replicative intermediates of porcine circovirus in animal tissue
cultured cells or in bacteria undergoing copy-release replication
SO VIROLOGY
LA English
DT Article
DE Porcine circovirus; Rolling-circle DNA replication; Copy-release DNA
replication
ID NONESSENTIAL TRANSCRIPTION UNITS; ROLLING-CIRCLE REPLICATION; MAIZE
STREAK VIRUS; DNA-REPLICATION; PROTECTIVE IMMUNITY; PLANT CIRCOVIRUSES;
NONPATHOGENIC PCV1; PROTEIN-SYNTHESIS; GENOMIC BACKBONE; VIRAL PROTEIN
AB Porcine circovirus (PCV) has been assumed to replicate its genome via the rolling-circle replication (RCR) mechanism because it encodes a Rep protein that contains several amino acid motifs commonly found in other RCR biological systems. Two proteins, Rep and Rep', are essential for PCV DNA replication in mammalian cells. In this work, replicative intermediates of PCV-infected porcine kidney (PK15) cells or copy-release of PCV genomes from a head-to-tail tandem construct (without Rep') in Escherichia coli were examined. In PK15 cells, replicative intermediates consistent with complementary-strand replication which converts single-stranded circular genome to double-stranded supercoiled DNA and RCR which generates single-stranded plus strand progeny genome were observed. To a lesser extent, intermediates suggestive of recombination-dependent replication were also detected. In Escherichia coli, copy release of the single-stranded circular PCV genome with conversion to a supercoiled molecule by complementary-strand synthesis was observed. However, replicative intermediates indicative of RCR were not detected. Published by Elsevier Inc.
C1 USDA ARS, Virus & Prion Dis Livestock Res Unit, Natl Anim Dis Ctr, Ames, IA 50010 USA.
RP Cheung, AK (reprint author), USDA ARS, Virus & Prion Dis Livestock Res Unit, Natl Anim Dis Ctr, POB 70, Ames, IA 50010 USA.
EM andrew.cheung@ars.usda.gov
NR 42
TC 6
Z9 6
U1 0
U2 11
PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0042-6822
J9 VIROLOGY
JI Virology
PD DEC 5
PY 2012
VL 434
IS 1
BP 38
EP 42
DI 10.1016/j.virol.2012.08.020
PG 5
WC Virology
SC Virology
GA 038OF
UT WOS:000311183300006
PM 22939286
ER
PT J
AU Holtman, KM
Kodama, A
Klamczynski, AP
Flynn, A
Bozzi, DV
Torres, L
Franqui-Villanueva, D
Mao, JD
Glenn, GM
Orts, WJ
AF Holtman, Kevin M.
Kodama, Alice
Klamczynski, Artur P.
Flynn, Allison
Bozzi, David V.
Torres, Lennard
Franqui-Villanueva, Diana
Mao, Jingdong
Glenn, Gregory M.
Orts, William J.
TI Thermal properties of poly(ethylene terephthalate) recovered from
municipal solid waste by steam autoclaving
SO JOURNAL OF APPLIED POLYMER SCIENCE
LA English
DT Article
DE polyesters; recycling; separation techniques; thermal properties; waste
AB The steam autoclaving of municipal solid waste followed by size separation was shown to be a way to recover virtually 100% of recyclable poly(ethylene terephthalate) (PET); this is a yield not attainable by a typical material recovery facility. The polymer properties of the recovered PET, which had undergone various degrees of thermal processing, were evaluated by thermogravimetric analysis, differential scanning calorimetry, gel permeation chromatography, viscometry, and solid-state NMR to assess the commercial viability of polymer reuse. The weight-average molecular weight (Mw) decreased as a result of autoclaving from 61,700 g/mol for postconsumer poly(ethylene terephthalate) (pcPET) to 59,700 g/mol for autoclaved postconsumer poly(ethylene terephthalate) [(apcPET)]. Mw for the reclaimed poly(ethylene terephthalate) (rPET) was slightly lower, at 57,400 g/mol. The melting temperature increased with two heat cycles from 236 degrees C for the heat-crystallized virgin poly(ethylene terephthalate) (vPET) pellets to 248 degrees C for apcPET and up to 253 degrees C for rPET. Correspondingly, the cold crystallization temperature decreased with increased processing from 134 degrees C for vPET to 120 degrees C for apcPET. The intrinsic viscosity varied from 0.773 dL/g for the vPET to 0.709 dL/g for rPET. Extruded samples were created to assess the potential commercial applications of the recovered rPET samples. The Mw values of the extruded apcPET and rPET samples dropped to 37,000 and 34,000 g/mol, respectively, after extrusion (three heat cycles); this indicated that exposure to heat dictated that these materials would be better suited for downcycled products, such as fibers and injected-molded products. (c) 2012 Wiley Periodicals, Inc. J. Appl. Polym. Sci., 2012
C1 [Holtman, Kevin M.; Kodama, Alice; Klamczynski, Artur P.; Bozzi, David V.; Franqui-Villanueva, Diana; Glenn, Gregory M.; Orts, William J.] ARS, USDA, Pacific W Area, Western Reg Res Ctr, Albany, CA 94710 USA.
[Flynn, Allison; Torres, Lennard] E Khashoggi Ind Ltd Liabil Corp, Santa Barbara, CA 93109 USA.
[Mao, Jingdong] Old Dominion Univ, Dept Chem & Biochem, Norfolk, VA 23529 USA.
RP Holtman, KM (reprint author), ARS, USDA, Pacific W Area, Western Reg Res Ctr, 800 Buchanan St, Albany, CA 94710 USA.
EM kevin.holtman@ars.usda.gov
FU USDA [CRADA 58-3K95-7-1175]; CR3 [CRADA 58-3K95-7-1175]
FX Contract grant sponsor: Cooperative Research and Development Agreement
between the USDA and CR3; contract grant number: CRADA 58-3K95-7-1175.
NR 0
TC 4
Z9 4
U1 1
U2 23
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0021-8995
J9 J APPL POLYM SCI
JI J. Appl. Polym. Sci.
PD DEC 5
PY 2012
VL 126
IS 5
BP 1698
EP 1708
DI 10.1002/app.36752
PG 11
WC Polymer Science
SC Polymer Science
GA 001PH
UT WOS:000308472100023
ER
PT J
AU Wyatt, VT
AF Wyatt, Victor T.
TI Effects of swelling on the viscoelastic properties of polyester films
made from glycerol and glutaric acid
SO JOURNAL OF APPLIED POLYMER SCIENCE
LA English
DT Article
DE viscoelastic properties; swelling; hyperbranched; gels
ID GELS; SOLVENT; HYDROGELS; BEHAVIOR; ORGANOGELS; POLYMERS; TRANSITION;
NETWORKS; DELIVERY
AB Viscoelastic properties have been determined for poly(glycerol-co-glutaric acid) films synthesized from Lewis acid-catalyzed polyesterifications. The polymers were prepared by synthesizing polymer gels that were subsequently cured at 125 degrees C to form polymer films. The polymers were evaluated for the extent of reaction before and after curing by Fourier transform infrared spectroscopy. They were subsequently immersed in dimethylsulfoxide, tetrahydrofuran, water, methanol, and hexane for 24 h. The amounts of solvent absorbed were monitored and recorded. Dependent up the solvent used, the polymers were able to absorb 9.5261% of its weight. The effects of the solvent absorption on the viscoelastic properties of the polyester films were evaluated by determining their elastic modulus (G'), viscous modulus (G?), tan dG?/G', and complex viscosity (?*) by performing oscillatory frequency sweep experiments. The elastic modulus (G') and viscous modulus (G?) were both higher for the dry polymers than the solvent-absorbed polymers. However, the polymer films were all higher in elastic (G') character than viscous (G?) character. Therefore, tan dG?/G' < 1 before and after immersion in solvents. Values for ?* decreased with angular frequency for all of the polyesters tested in this study. (c) 2012 Wiley Periodicals, Inc. J Appl Polym Sci, 2012
C1 ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
RP Wyatt, VT (reprint author), ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
EM victor.wyatt@ars.usda.gov
NR 35
TC 4
Z9 5
U1 1
U2 18
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0021-8995
J9 J APPL POLYM SCI
JI J. Appl. Polym. Sci.
PD DEC 5
PY 2012
VL 126
IS 5
BP 1784
EP 1793
DI 10.1002/app.36908
PG 10
WC Polymer Science
SC Polymer Science
GA 001PH
UT WOS:000308472100033
ER
PT J
AU Sumiyanto, J
Dayan, FE
Cerdeira, AL
Wang, YH
Khan, IA
Moraes, RM
AF Sumiyanto, Joko
Dayan, Franck E.
Cerdeira, Antonio L.
Wang, Yan-Hong
Khan, Ikhlas A.
Moraes, Rita M.
TI Oligofructans content and yield of yacon (Smallanthus sonchifolius)
cultivated in Mississippi
SO SCIENTIA HORTICULTURAE
LA English
DT Article
DE Smallanthus; Root crops; Fructans; Obesity; Polymnia sonchifolia
ID POLYMNIA-SONCHIFOLIA; FRUCTOSYL TRANSFERASE; ROOTS; CARBOHYDRATE;
ASTERACEAE; HYDROLASE; EXTRACTS; STORAGE; GROWTH; INULIN
AB Inulin and oligofructans-rich crops have great industrial versatility because these sugars can replace sucrose, fat and flour with low caloric index, while providing many health benefits to consumers. Recent clinical studies reveal that supplementation of oligofructans promotes weight loss by suppressing ghrelin and increasing peptide YY in overweight and obese adults. Thus, greater consumption of vegetables and fruits rich in oligofructans may improve health conditions, which is particularly important for Mississippi as it has one of the highest rates of obesity and diabetes in the United States. Species belonging to the Asteraceae family including yacon, Smallanthus sonchifolius, are particularly rich sources of stored inulin and oligofructans in their storage roots and rhizophores (the underground storage organs). Thus, we cultivated yacon in North Mississippi as a specialty crop: expecting that in the near future fresh yacon could be introduced as a functional food to supplement the diet of Mississippians treating diet related chronic diseases. We evaluated the quality of leaves harvested in mid-November based on the content of chlorogenic and 3,5-dicaffeoylquinic acids and the fructan yields in roots and rhizophores. After the leaves were damaged by frost, the content of oligofructans was reduced affecting the quality of the tuberous roots and rhizophores. Estimated yield based on the relative fresh weight of plants harvested on November 17, before the frost, was 73.1 t/ha of underground parts from which 25.6 t/ha produced roots and 47.5 t/ha rhizophores. (c) 2012 Elsevier B.V. All rights reserved.
C1 [Sumiyanto, Joko; Wang, Yan-Hong; Khan, Ikhlas A.; Moraes, Rita M.] Univ Mississippi, Sch Pharm, Natl Ctr Nat Prod Res, University, MS 38677 USA.
[Sumiyanto, Joko; Khan, Ikhlas A.; Moraes, Rita M.] Univ Mississippi, Field Stn, Ctr Water & Wetland Resources, Abbeville, MS 38601 USA.
[Dayan, Franck E.] USDA, ARS, Nat Prod Utilizat Res Unit, University, MS 38677 USA.
[Cerdeira, Antonio L.] Embrapa Environm, Brazilian Dept Agr, BR-13820000 Jaguariuna, SP, Brazil.
[Khan, Ikhlas A.] Univ Mississippi, Sch Pharm, Dept Pharmacognosy, University, MS 38677 USA.
RP Moraes, RM (reprint author), Univ Mississippi, Field Stn, Natl Ctr Nat Prod Res, 15 Rd 2078, Abbeville, MS 38601 USA.
EM rmoraes@olemiss.edu
RI Dayan, Franck/A-7592-2009
OI Dayan, Franck/0000-0001-6964-2499
FU USDA, Agricultural Research Service [58-6408-7-012]
FX The authors thank the USDA, Agricultural Research Service Specific
Cooperative Agreement No. 58-6408-7-012 for the research support. We
acknowledge Mr. Greg Swain and Mr. John Mark Baker for their help with
the yacon plantings.
NR 26
TC 1
Z9 2
U1 0
U2 33
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0304-4238
J9 SCI HORTIC-AMSTERDAM
JI Sci. Hortic.
PD DEC 4
PY 2012
VL 148
BP 83
EP 88
DI 10.1016/j.scienta.2012.09.020
PG 6
WC Horticulture
SC Agriculture
GA 093ZI
UT WOS:000315232000011
ER
PT J
AU Morrison, NI
Simmons, GS
Fu, GL
O'Connell, S
Walker, AS
Dafa'alla, T
Walters, M
Claus, J
Tang, GL
Jin, L
Marubbi, T
Epton, MJ
Harris, CL
Staten, RT
Miller, E
Miller, TA
Alphey, L
AF Morrison, Neil I.
Simmons, Gregory S.
Fu, Guoliang
O'Connell, Sinead
Walker, Adam S.
Dafa'alla, Tarig
Walters, Michelle
Claus, John
Tang, Guolei
Jin, Li
Marubbi, Thea
Epton, Matthew J.
Harris, Claire L.
Staten, Robert T.
Miller, Ernest
Miller, Thomas A.
Alphey, Luke
TI Engineered Repressible Lethality for Controlling the Pink Bollworm, a
Lepidopteran Pest of Cotton
SO PLOS ONE
LA English
DT Article
ID MEDITERRANEAN FRUIT-FLY; PIGGYBAC TRANSPOSABLE ELEMENT; STERILE INSECT
TECHNIQUE; INHERITED STERILITY; MATING COMPETITIVENESS;
CERATITIS-CAPITATA; MOSQUITO-CONTROL; MEDFLY DIPTERA; GENETIC SYSTEM;
RESISTANCE
AB The sterile insect technique (SIT) is an environmentally friendly method of pest control in which insects are mass-produced, irradiated and released to mate with wild counterparts. SIT has been used to control major pest insects including the pink bollworm (Pectinophora gossypiella Saunders), a global pest of cotton. Transgenic technology has the potential to overcome disadvantages associated with the SIT, such as the damaging effects of radiation on released insects. A method called RIDL (Release of Insects carrying a Dominant Lethal) is designed to circumvent the need to irradiate insects before release. Premature death of insects' progeny can be engineered to provide an equivalent to sterilisation. Moreover, this trait can be suppressed by the provision of a dietary antidote. In the pink bollworm, we generated transformed strains using different DNA constructs, which showed moderate-to-100% engineered mortality. In permissive conditions, this effect was largely suppressed. Survival data on cotton in field cages indicated that field conditions increase the lethal effect. One strain, called OX3402C, showed highly penetrant and highly repressible lethality, and was tested on host plants where its larvae caused minimal damage before death. These results highlight a potentially valuable insecticide-free tool against pink bollworm, and indicate its potential for development in other lepidopteran pests.
C1 [Morrison, Neil I.; Fu, Guoliang; O'Connell, Sinead; Walker, Adam S.; Dafa'alla, Tarig; Jin, Li; Marubbi, Thea; Harris, Claire L.; Alphey, Luke] Oxitec Ltd, Oxford, England.
[Morrison, Neil I.; Fu, Guoliang; Jin, Li; Epton, Matthew J.; Alphey, Luke] Univ Oxford, Dept Zool, Oxford OX1 3PS, England.
[Simmons, Gregory S.; Walters, Michelle; Claus, John; Tang, Guolei; Staten, Robert T.; Miller, Ernest] Anim Plant Hlth & Inspect Serv, Ctr Plant Hlth Sci & Technol, USDA, Phoenix, AZ USA.
[Simmons, Gregory S.] Anim Plant Hlth & Inspect Serv, Ctr Plant Hlth Sci & Technol, USDA, Salinas, CA USA.
[Miller, Thomas A.] Univ Calif Riverside, Dept Entomol, Riverside, CA 92521 USA.
RP Alphey, L (reprint author), Oxitec Ltd, Oxford, England.
EM luke.alphey@oxitec.com
FU Oxitec Limited
FX Those authors affiliated to Oxitec Limited (as noted in the author list)
are or were employees of this company, which therefore provided salary
and other support for the research program; these authors also have
shares or share options in Oxitec Ltd. This does not alter the authors'
adherence to all the PLOS ONE policies on sharing data and materials.
NR 51
TC 9
Z9 11
U1 1
U2 35
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 4
PY 2012
VL 7
IS 12
AR e50922
DI 10.1371/journal.pone.0050922
PG 10
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 051EQ
UT WOS:000312108500035
PM 23226548
ER
PT J
AU Piaggio, AJ
Shriner, SA
VanDalen, KK
Franklin, AB
Anderson, TD
Kolokotronis, SO
AF Piaggio, Antoinette J.
Shriner, Susan A.
VanDalen, Kaci K.
Franklin, Alan B.
Anderson, Theodore D.
Kolokotronis, Sergios-Orestis
TI Molecular Surveillance of Low Pathogenic Avian Influenza Viruses in Wild
Birds across the United States: Inferences from the Hemagglutinin Gene
SO PLOS ONE
LA English
DT Article
ID A VIRUSES; NORTH-AMERICA; GEOGRAPHIC SUBDIVISION; PHYLOGENETIC ANALYSES;
POPULATION-GROWTH; SEQUENCE-ANALYSIS; MIGRATORY BIRDS; H5N1 VIRUSES;
TRANSMISSION; ORIGIN
AB A United States interagency avian influenza surveillance plan was initiated in 2006 for early detection of highly pathogenic avian influenza viruses (HPAIV) in wild birds. The plan included a variety of wild bird sampling strategies including the testing of fecal samples from aquatic areas throughout the United States from April 2006 through December 2007. Although HPAIV was not detected through this surveillance effort we were able to obtain 759 fecal samples that were positive for low pathogenic avian influenza virus (LPAIV). We used 136 DNA sequences obtained from these samples along with samples from a public influenza sequence database for a phylogenetic assessment of hemagglutinin (HA) diversity in the United States. We analyzed sequences from all HA subtypes except H5, H7, H14 and H15 to examine genetic variation, exchange between Eurasia and North America, and geographic distribution of LPAIV in wild birds in the United States. This study confirms intercontinental exchange of some HA subtypes (including a newly documented H9 exchange event), as well as identifies subtypes that do not regularly experience intercontinental gene flow but have been circulating and evolving in North America for at least the past 20 years. These HA subtypes have high levels of genetic diversity with many lineages co-circulating within the wild birds of North America. The surveillance effort that provided these samples demonstrates that such efforts, albeit labor-intensive, provide important information about the ecology of LPAIV circulating in North America.
C1 [Piaggio, Antoinette J.; Shriner, Susan A.; VanDalen, Kaci K.; Franklin, Alan B.; Anderson, Theodore D.] Wildlife Serv, Natl Wildlife Res Ctr, USDA, Ft Collins, CO USA.
[Kolokotronis, Sergios-Orestis] Amer Museum Nat Hist, Sackler Inst Comparat Genom, New York, NY 10024 USA.
[Kolokotronis, Sergios-Orestis] Fordham Univ, Dept Biol Sci, Bronx, NY 10458 USA.
RP Piaggio, AJ (reprint author), Wildlife Serv, Natl Wildlife Res Ctr, USDA, Ft Collins, CO USA.
EM toni.j.piaggio@aphis.usda.gov
RI Kolokotronis, Sergios-Orestis/A-1910-2009;
OI Kolokotronis, Sergios-Orestis/0000-0003-3309-8465; Shriner,
Susan/0000-0003-0349-7182
FU United States Department of Agriculture; U.S. Defense Advanced Research
Projects Agency (DARPA)
FX This study was primarily funded by the United States Department of
Agriculture. SOK was funded by the U.S. Defense Advanced Research
Projects Agency (DARPA). DARPA had no role in study design, data
collection and analysis, decision to publish, or preparation of the
manuscript.
NR 58
TC 3
Z9 3
U1 1
U2 11
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 4
PY 2012
VL 7
IS 12
AR e50834
DI 10.1371/journal.pone.0050834
PG 18
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 051EQ
UT WOS:000312108500032
PM 23226543
ER
PT J
AU Priester, JH
Ge, Y
Mielke, RE
Horst, AM
Moritz, SC
Espinosa, K
Gelb, J
Walker, SL
Nisbet, RM
An, YJ
Schimel, JP
Palmer, RG
Hernandez-Viezcas, JA
Zhao, LJ
Gardea-Torresdey, JL
Holden, PA
AF Priester, John H.
Ge, Yuan
Mielke, Randall E.
Horst, Allison M.
Moritz, Shelly Cole
Espinosa, Katherine
Gelb, Jeff
Walker, Sharon L.
Nisbet, Roger M.
An, Youn-Joo
Schimel, Joshua P.
Palmer, Reid G.
Hernandez-Viezcas, Jose A.
Zhao, Lijuan
Gardea-Torresdey, Jorge L.
Holden, Patricia A.
TI Reply to Lombi et al.: Clear effects of manufactured nanomaterials to
soybean
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
AMERICA
LA English
DT Letter
C1 [Priester, John H.; Ge, Yuan; Mielke, Randall E.; Horst, Allison M.; Holden, Patricia A.] Univ Calif Santa Barbara, Bren Sch Environm Sci & Management, Santa Barbara, CA 93106 USA.
[Priester, John H.; Ge, Yuan; Mielke, Randall E.; Horst, Allison M.; Moritz, Shelly Cole; Nisbet, Roger M.; Schimel, Joshua P.; Holden, Patricia A.] Univ Calif Santa Barbara, Earth Res Inst, Santa Barbara, CA 93106 USA.
[Priester, John H.; Ge, Yuan; Mielke, Randall E.; Horst, Allison M.; Walker, Sharon L.; Nisbet, Roger M.; Schimel, Joshua P.; Hernandez-Viezcas, Jose A.; Zhao, Lijuan; Gardea-Torresdey, Jorge L.; Holden, Patricia A.] Univ Calif Santa Barbara, UC Ctr Environm Implicat Nanotechnol, Santa Barbara, CA 93106 USA.
[Nisbet, Roger M.; Schimel, Joshua P.] Univ Calif Santa Barbara, Dept Ecol Evolut & Marine Biol, Santa Barbara, CA 93106 USA.
[Mielke, Randall E.] CALTECH, NASA, Jet Prop Lab, Divis Geol & Planetary Sci, Pasadena, CA 91101 USA.
[Espinosa, Katherine; Palmer, Reid G.; Zhao, Lijuan] Iowa State Univ, Dept Agron, Ames, IA 50011 USA.
[Gelb, Jeff] Xradia Corp, Pleasanton, CA 94588 USA.
[Walker, Sharon L.] Univ Calif Riverside, Dept Chem & Environm Engn, Riverside, CA 92521 USA.
[An, Youn-Joo] Konkuk Univ, Dept Environm Sci, Seoul 143701, South Korea.
[Palmer, Reid G.] ARS, Corn Insects & Crop Genet Res Unit, USDA, Ames, IA 50011 USA.
[Hernandez-Viezcas, Jose A.; Zhao, Lijuan; Gardea-Torresdey, Jorge L.] Univ Texas El Paso, Dept Chem, El Paso, TX 79968 USA.
RP Holden, PA (reprint author), Univ Calif Santa Barbara, Bren Sch Environm Sci & Management, Santa Barbara, CA 93106 USA.
EM holden@bren.ucsb.edu
RI Nisbet, Roger/B-6951-2014; Ge, Yuan/D-2997-2009
OI Ge, Yuan/0000-0003-0234-5638
NR 3
TC 1
Z9 1
U1 2
U2 40
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 4
PY 2012
VL 109
IS 49
BP E3337
EP E3337
DI 10.1073/pnas.1215763109
PG 1
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 054MF
UT WOS:000312347200004
ER
PT J
AU Ferris, CD
Kruse, JJ
Lafontaine, JD
Philip, KW
Schmidt, BC
Sikes, DS
AF Ferris, Clifford D.
Kruse, James J.
Lafontaine, J. Donald
Philip, Kenelm W.
Schmidt, B. Christian
Sikes, Derek S.
TI A Checklist of the Moths of Alaska
SO ZOOTAXA
LA English
DT Article
DE Alaska; checklist; Lepidoptera; moths; North America
ID NORTH-AMERICA; LEPIDOPTERA; SPHINGIDAE; NOCTUIDAE; LIST
AB This article represents the first published complete checklist of the moth taxa, resident and occasional, recorded to date for Alaska. Seven-hundred and ten species are listed. General species distribution ranges within the state are included. Three North American records are listed for the first time: Cydia cornucopiae (Tengstrom); Eucosma hohenwartiana ([D. & S.]); Acronicta menyanthidis (Vieweg).
C1 [Ferris, Clifford D.] Univ Florida, McGuire Ctr Lepidoptera & Biodivers, Florida Museum Nat Hist, Gainesville, FL USA.
[Ferris, Clifford D.] Colorado State Univ, CP Gillette Museum Arthropod Div, Ft Collins, CO 80523 USA.
[Kruse, James J.] US Forest Serv, USDA, Fairbanks Unit, Fairbanks, AK USA.
[Kruse, James J.; Philip, Kenelm W.; Sikes, Derek S.] Univ Alaska Museum, Fairbanks, AK 99775 USA.
[Schmidt, B. Christian] Agr & Agri Food Canada, Biodivers Program, Canadian Natl Collect Insects Arachnids & Nematod, Canadian Food Inspect Agcy, Ottawa, ON K1A 0C6, Canada.
[Philip, Kenelm W.] Univ Alaska, Inst Arctic Biol, Fairbanks, AK 99775 USA.
[Philip, Kenelm W.] Smithsonian Inst, Natl Museum Nat Hist, Washington, DC 20560 USA.
RP Ferris, CD (reprint author), 5405 Bill Nye Ave,RR 3, Laramie, WY 82070 USA.
EM cdferris@uwyo.edu; jkruse@fs.fed.us; Don.Lafontaine@AGR.GC.CA;
kwp.uaf@gmail.com; schmidtcb@inspection.gc.ca; dssikes@alaska.edu
RI Yakovlev, Roman/J-7243-2013
NR 28
TC 4
Z9 4
U1 0
U2 1
PU MAGNOLIA PRESS
PI AUCKLAND
PA PO BOX 41383, AUCKLAND, ST LUKES 1030, NEW ZEALAND
SN 1175-5326
EI 1175-5334
J9 ZOOTAXA
JI Zootaxa
PD DEC 4
PY 2012
IS 3571
BP 1
EP 25
PG 25
WC Zoology
SC Zoology
GA 047QZ
UT WOS:000311856900001
ER
PT J
AU Hunt, ER
Wang, LL
Qu, JJ
Hao, XJ
AF Hunt, E. Raymond, Jr.
Wang, Lingli
Qu, John J.
Hao, Xianjun
TI Remote sensing of fuel moisture content from canopy water indices and
normalized dry matter index
SO JOURNAL OF APPLIED REMOTE SENSING
LA English
DT Article
DE normalized dry matter content; normalized dry matter index; PROSPECT;
SAIL; normalized difference infrared index; normalized difference water
index
ID REFLECTANCE DATA; MODEL INVERSION; SPECTRAL INDEX; FIRE DANGER; WESTERN
US; NOAA-AVHRR; VEGETATION; LEAF; SIMULATION; THICKNESS
AB Fuel moisture content (FMC), an important variable for predicting the occurrence and spread of wildfire, is the ratio of foliar water content and foliar dry matter content. One approach for the remote sensing of FMC has been to estimate the change in canopy water content over time by using a liquid-water spectral index. Recently, the normalized dry matter index (NDMI) was developed for the remote sensing of dry matter content using high-spectral-resolution data. The ratio of a spectral water index and a dry matter index corresponds to the ratio of foliar water and dry matter contents; therefore, we hypothesized that FMC may be remotely sensed with a spectral water index divided by NDMI. For leaf-scale simulations using the PROSPECT (leaf optical properties spectra) model, all water index/NDMI ratios were significantly related to FMC with a second-order polynomial regression. For canopy-scale simulations using the SAIL (scattering by arbitrarily inclined leaves) model, two water index/NDMI ratios, with numerators of the normalized difference infrared index (NDII) and the normalized difference water index (NDWI), predicted FMC with R-2 values of 0.900 and 0.864, respectively. Leaves from three species were dried or stacked to vary FMC; measured NDII/NDMI was best related to FMC. Whereas the planned NASA mission Hyperspectral Infrared Imager (HyspIRI) will have high spectral resolution and very high signal-to-noise properties, the planned 19-day repeat frequency will not be sufficient for monitoring FMC with NDII/NDMI. Because increased fire frequency is expected with climatic change, operational assessment of FMC at large scales may require polar-orbiting environmental sensors with narrow bands to calculate NDMI. (c) 2012 Society of Photo-Optical Instrumentation Engineers (SPIE). [DOI: 10.1117/1.JRS.6.061705]
C1 [Hunt, E. Raymond, Jr.] ARS, Hydrol & Remote Sensing Lab, USDA, Beltsville, MD 20705 USA.
[Wang, Lingli; Qu, John J.; Hao, Xianjun] George Mason Univ, Dept Geog & Geoinformat Sci, Fairfax, VA 22030 USA.
RP Hunt, ER (reprint author), ARS, Hydrol & Remote Sensing Lab, USDA, 10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM Raymond.Hunt@ars.usda.gov
RI Hao, Xianjun/F-7253-2016; Hao, Xianjun/C-9543-2011
OI Hao, Xianjun/0000-0002-8186-6839; Hao, Xianjun/0000-0002-8186-6839
NR 41
TC 0
Z9 0
U1 0
U2 23
PU SPIE-SOC PHOTO-OPTICAL INSTRUMENTATION ENGINEERS
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98225 USA
SN 1931-3195
J9 J APPL REMOTE SENS
JI J. Appl. Remote Sens.
PD DEC 3
PY 2012
VL 6
AR 061705
DI 10.1117/1.JRS.6.061705
PG 11
WC Environmental Sciences; Remote Sensing; Imaging Science & Photographic
Technology
SC Environmental Sciences & Ecology; Remote Sensing; Imaging Science &
Photographic Technology
GA 094BC
UT WOS:000315236900001
ER
PT J
AU Wang, D
Wise, ML
Li, F
Dey, M
AF Wang, Dan
Wise, Mitchell L.
Li, Feng
Dey, Moul
TI Phytochemicals Attenuating Aberrant Activation of beta-Catenin in Cancer
Cells
SO PLOS ONE
LA English
DT Article
ID WNT SIGNALING PATHWAY; WNT/BETA-CATENIN; OXIDATIVE STRESS; IN-VITRO;
TRIPTERYGIUM-WILFORDII; LITHIUM-CHLORIDE; AVENANTHRAMIDES; OATS;
TRIPTOLIDE; MICE
AB Phytochemicals are a rich source of chemoprevention agents but their effects on modulating the Wnt/beta-catenin signaling pathway have remained largely uninvestigated. Aberrantly activated Wnt signaling can result in the abnormal stabilization of beta-catenin, a key causative step in a broad spectrum of cancers. Here we report the modulation of lithium chloride-activated canonical Wnt/beta-catenin signaling by phytochemicals that have antioxidant, anti-inflammatory or chemopreventive properties. The compounds were first screened with a cervical cancer-derived stable Wnt signaling reporter HeLa cell line. Positive hits were subsequently evaluated for beta-catenin degradation, suppression of beta-catenin nuclear localization and down-regulation of downstream oncogenic targets of Wnt/beta-catenin pathway. Our study shows a novel degradation path of beta-catenin protein in HeLa cells by Avenanthramide 2p (a polyphenol) and Triptolide (a diterpene triepoxide), respectively from oats and a Chinese medicinal plant. The findings present Avenanthramide 2p as a potential chemopreventive dietary compound that merits further study using in vivo models of cancers; they also provide a new perspective on the mechanism of action of Triptolide. Citation: Wang D, Wise ML, Li F, Dey M (2012) Phytochemicals Attenuating Aberrant Activation of beta-Catenin in Cancer Cells. PLoS ONE 7(12): e50508. doi:10.1371/journal.pone.0050508
C1 [Wang, Dan; Dey, Moul] S Dakota State Univ, Dept Hlth & Nutr Sci, Brookings, SD 57007 USA.
[Wise, Mitchell L.] USDA, Madison, WI USA.
[Li, Feng] S Dakota State Univ, Dept Biol & Microbiol, Brookings, SD 57007 USA.
[Li, Feng] S Dakota State Univ, Dept Vet & Biomed Sci, Brookings, SD 57007 USA.
RP Dey, M (reprint author), S Dakota State Univ, Dept Hlth & Nutr Sci, Brookings, SD 57007 USA.
EM moul.dey@sdstate.edu
FU National Institutes of Health [R00AT4245]; USDA/SD-AES grant
[328100/318000]; SDSU AES Fund [3AH203]; NIH grant [AI076125]
FX The work is supported by the National Institutes of Health grant
R00AT4245 (to MD), USDA/SD-AES grant 328100/318000 (to MD), SDSU AES
Fund 3AH203 (to FL) and NIH grant AI076125 (to FL). The funders had no
role in study design, data collection and analysis, decision to publish,
or preparation of the manuscript.
NR 49
TC 10
Z9 10
U1 1
U2 32
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 3
PY 2012
VL 7
IS 12
AR e50508
DI 10.1371/journal.pone.0050508
PG 12
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 051DH
UT WOS:000312104700019
PM 23226522
ER
PT J
AU Fratamico, PM
Bagi, LK
AF Fratamico, Pina M.
Bagi, Lori K.
TI Detection of Shiga toxin-producing Escherichia coli in ground beef using
the GeneDisc real-time PCR system
SO FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY
LA English
DT Article
DE GeneDisc; real-time PCR; STEC; virulence genes; O-group; detection;
isolation; E. coli O157:H7
ID HEMOLYTIC-UREMIC SYNDROME; CLOSTRIDIUM-BOTULINUM TYPES; UNITED-STATES;
O111; STRAINS; O145; O103; O26; PREVALENCE; PATHOGENS
AB Escherichia calf O157:H7 and certain non 0157 Shiga toxin producing Escherichia call (STEC) serogroups have emerged as important public health threats. The development of methods for rapid and reliable detection of this heterogeneous group of pathogens has been challenging. GeneDisc real-time PCR assays were evaluated for detection of the stx(1), stx(2), eae, and ehxA genes and a gene that identifies the 0157 serogroup followed by a second GeneDisc assay targeting serogroup-specific genes of STEC 026, 045, 091, 0103, 0111, 0113, 0121, 0145, and 0157 The ability to detect the STEC serogroups in ground beef samples artificially inoculated at a level of ca. 2-20 CFU/25 g and subjected to enrichment in mTSB or buffered peptone water (BPVV) was similar. Following enrichment, all inoculated ground beef samples showed amplification of the correct set of target genes carried by each strain. Samples inoculated with STEC serogroups 026, 045, 0103, 0111, 0121, 0145, and 0157 were subjected to immunomagnetic separation (IMS), and isolation was achieved by plating onto Rainbow agar 0157 Colonies were confirmed by PCR assays targeting stx(1), stx(2), eae, and serogroup-specific genes. Thus, this work demonstrated that GeneDisc assays are rapid, sensitive, and reliable and can be used for screening ground beef and potentially other foods for STEC serogroups that are important food-borne pathogens worldwide.
C1 [Fratamico, Pina M.; Bagi, Lori K.] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
RP Fratamico, PM (reprint author), ARS, Eastern Reg Res Ctr, USDA, 600 East Mermaid Lane, Wyndmoor, PA 19038 USA.
EM pina.fratamico@ars.usda.gov
NR 31
TC 13
Z9 14
U1 0
U2 9
PU FRONTIERS RESEARCH FOUNDATION
PI LAUSANNE
PA PO BOX 110, LAUSANNE, 1015, SWITZERLAND
SN 2235-2988
J9 FRONT CELL INFECT MI
JI Front. Cell. Infect. Microbiol.
PD DEC
PY 2012
VL 2
AR UNSP 152
DI 10.3389/fcimb.2012.00152
PG 6
WC Immunology; Microbiology
SC Immunology; Microbiology
GA 221EC
UT WOS:000324639400001
PM 23267438
ER
PT J
AU Kahlon, TS
Milczarek, RR
Chiu, MCM
AF Kahlon, Talwinder S.
Milczarek, Rebecca R.
Chiu, Mei-Chin M.
TI In vitro Bile Acid Binding of Kale, Mustard greens, Broccoli, Cabbage
and Green Bell Pepper Improves with Microwave Cooking
SO VEGETOS
LA English
DT Article
DE In vitro; bile acid binding; kale; mustard greens; broccoli; cabbage;
green bell pepper; collard greens; microwave cooking
ID CICER-ARIETINUM; RICE BRAN; OAT BRAN; CHOLESTEROL; VEGETARIANS;
VEGETABLES; COMPONENTS; EXCRETION; ENZYMES; SPROUTS
AB Bile acid binding potential of foods and food fractions has been related to lowering the risk of heart disease and that of cancer. Sauteing or steam cooking has been observed to significantly improve bile acid binding of green/leafy vegetables. It was hypothesized that microwave cooking could improve the bile acid binding of various vegetables. Microwave cooking with no added water resulted in bile acid binding measured on a dry matter basis relative to cholestyramine of 13% for kale and mustard greens, 9% for broccoli and collard greens, 4% for cabbage, and 2% for green bell pepper. These results point to the significantly different (P <= 0.05) health promoting potential of kale = mustard greens > broccoli = collard greens > cabbage > green bell pepper. Microwave cooking with no added water significantly improved in vitro bile acid binding of kale, mustard greens, broccoli and cabbage compared with microwave cooking with added water or raw (uncooked). For green bell pepper, binding values were similar when microwave cooked with or without added water and significantly higher than uncooked. In the case of collard greens, bile acid binding values were similar for raw or microwave cooked with added water and were significantly lowered by microwave cooking with no added water. Microwave cooking with no added water should be used for kale, mustard greens, broccoli and cabbage; for collard greens and green bell pepper microwave with added water as the cooking method. These green/leafy vegetables, when consumed regularly after microwave cooking would promote a healthy lifestyle, keep dietary fat low, and have the potential to lower the risk of premature degenerative diseases.
C1 [Kahlon, Talwinder S.; Milczarek, Rebecca R.; Chiu, Mei-Chin M.] USDA ARS, Western Reg Res Ctr, Albany, CA 94710 USA.
RP Kahlon, TS (reprint author), USDA ARS, Western Reg Res Ctr, 800 Buchanan St, Albany, CA 94710 USA.
EM talwinder.kahlon@ars.usda.gov
FU USDA-ARS
FX The expert statistical assistance of Linda C. Whitehand, Consulting
Statistician, WRRC, USDA-ARS, Albany, CA is greatly appreciated. This
study was supported by USDA-ARS base funds.
NR 39
TC 0
Z9 0
U1 2
U2 5
PU SOC PLANT RESEARCH
PI MEERUT
PA O-89, PALLAVPURAM PHASE-II, MEERUT, 250 110 U P, INDIA
SN 0970-4078
J9 VEGETOS
JI Vegetos
PD DEC
PY 2012
VL 25
IS 2
BP 29
EP 36
PG 8
WC Plant Sciences
SC Plant Sciences
GA 201FG
UT WOS:000323125500004
ER
PT J
AU Wei, S
Duarte, MS
Du, M
Paulino, PVR
Jiang, Z
Albrecht, E
Fernyhough-Culver, M
Zan, L
Hausman, GJ
Dodson, MV
AF Wei, S.
Duarte, M. S.
Du, M.
Paulino, P. V. R.
Jiang, Z.
Albrecht, E.
Fernyhough-Culver, M.
Zan, L.
Hausman, G. J.
Dodson, M. V.
TI Bovine mature adipocytes readily return to a proliferative state
SO TISSUE & CELL
LA English
DT Article
DE Mature adipocytes; Proliferation; DFAT cells
ID DEDIFFERENTIATED FAT-CELLS; ADIPOSE-TISSUE; GENE-EXPRESSION;
PERIMUSCULAR PREADIPOCYTES; MUSCLE-TISSUE; MEAT ANIMALS; IN-VITRO;
CULTURE; DIFFERENTIATION; ADIPOGENESIS
AB The dynamics of human and animal adipogenesis has been defined using several traditional cell systems including stromal vascular cells and adipocyte-related cell lines. But a relatively new cell system using progeny cells stemming from the dedifferentiation of purified cultures of mature adipocytes may be used for studying the development and biology of adipocytes. In this research, we show that isolated (and purified) mature adipocytes derived from Wagyu cattle dedifferentiate into progeny cells, and that these spindle-shaped, proliferative-competent daughter cells possess ability to proliferate. We outline the optimum cell culture system and offer precautionary thoughts for effective mature adipocyte culture. Collectively, this represents a novel cell model which may provide new insights into cell development, physiology and use as a model for animal production/composition, tissue engineering and disease treatment. (c) 2012 Elsevier Ltd. All rights reserved.
C1 [Wei, S.; Zan, L.] Northwest A&F Univ, Coll Anim Sci & Technol, Yangling 712100, Shaanxi Provinc, Peoples R China.
[Wei, S.; Duarte, M. S.; Du, M.; Jiang, Z.; Dodson, M. V.] Washington State Univ, Dept Anim Sci, Pullman, WA 99164 USA.
[Duarte, M. S.; Paulino, P. V. R.] Univ Fed Vicosa, Dept Anim Sci, BR-36570000 Vicosa, MG, Brazil.
[Hausman, G. J.] USDA ARS, Richard B Russell Agr Res Stn, Athens, GA 30604 USA.
[Albrecht, E.] Leibniz Inst Farm Anim Biol Muscle Biol & Growth, D-18196 Dummerstorf, Germany.
[Fernyhough-Culver, M.] Hartz Mt Corp, Secaucus, NJ 07094 USA.
RP Dodson, MV (reprint author), Washington State Univ, Dept Anim Sci, Pullman, WA 99164 USA.
EM zanls@yahoo.com.cn; dodson@wsu.edu
RI Du, Min/H-4311-2011; Jiang, Zhihua/A-3378-2008; Duarte,
Marcio/G-3815-2015
OI Du, Min/0000-0002-7232-072X; Jiang, Zhihua/0000-0003-1986-088X; Duarte,
Marcio/0000-0002-5795-6420
NR 70
TC 1
Z9 1
U1 0
U2 8
PU CHURCHILL LIVINGSTONE
PI EDINBURGH
PA JOURNAL PRODUCTION DEPT, ROBERT STEVENSON HOUSE, 1-3 BAXTERS PLACE,
LEITH WALK, EDINBURGH EH1 3AF, MIDLOTHIAN, SCOTLAND
SN 0040-8166
J9 TISSUE CELL
JI Tissue Cell
PD DEC
PY 2012
VL 44
IS 6
BP 385
EP 390
DI 10.1016/j.tice.2012.08.001
PG 6
WC Anatomy & Morphology; Cell Biology
SC Anatomy & Morphology; Cell Biology
GA 179YY
UT WOS:000321560400006
PM 22943980
ER
PT J
AU McCord, PH
AF McCord, Per H.
TI Relationship of Resistance to Meloidogyne chitwoodi (race 2) and M.
hapla in Alfalfa
SO JOURNAL OF NEMATOLOGY
LA English
DT Article
DE alfalfa; host status; Meloidogyne chitwoodi; Meloidogyne hapla; pest
resistance
ID POPULATION-DENSITIES; NEMATODES; SEEDLINGS; POTATO; GROWTH; YIELD; SOIL
AB In the Pacific Northwest, alfalfa (Medicago sativa) is host to two species of root-knot nematodes, including race 2 of the Columbia root-knot nematode (Meloidogyne chitwoodi) and the northern root-knot nematode (Meloidogyne hapla). In addition to the damage caused to alfalfa itself by M. hapla, alfalfa's host status to both species leaves large numbers of nematodes available to damage rotation crops, of which potato is the most important. A nematode-resistant alfalfa germplasm release, W12SR2W1, was challenged with both nematode species, to determine the correlation, if any, of resistance to nematode reproduction. Thirty genotypes were screened in replicated tests with M. chitwoodi race 2 or M. hapla, and the reproductive factor (RF) was calculated. The distribution of natural log-transformed RF values was skewed for both nematode species, but more particularly for M. chitwoodi race 2, where more than half the genotypes screened were non-hosts. Approximately 30 percent of genotypes were non-hosts or very poor hosts of M. hapla, but RF values for M. hapla on susceptible genotypes were generally much higher than RF values for genotypes susceptible to M. chitwoodi race 2. The Spearman rank correlation was positive (0.52) and significant (p-value = 0.003), indicating there is some relationship between resistance to these two species of root-knot nematode in alfalfa. However the relationship is not strong enough to suggest genetic loci for resistance are identical, or closely linked. Breeding for resistance or immunity will require screening with each species separately, or with different DNA markers if marker-assisted breeding is pursued. A number of genotypes were identified which are non-hosts to both species. These plants will be intercrossed to develop a non-host germplasm.
C1 USDA ARS, Vegetable & Forage Crops Res Unit, Prosser, WA 99350 USA.
RP McCord, PH (reprint author), USDA ARS, Vegetable & Forage Crops Res Unit, Prosser, WA 99350 USA.
EM per.mccord@ars.usda.gov
NR 13
TC 2
Z9 2
U1 6
U2 13
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 387
EP 390
PG 4
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400010
PM 23483826
ER
PT J
AU Khan, MR
Handoo, ZA
Rao, U
Rao, SB
Prasad, JS
AF Khan, Matiyar R.
Handoo, Zafar A.
Rao, Uma
Rao, S. B.
Prasad, J. S.
TI Observations on the Foliar Nematode, Aphelenchoides besseyi, Infecting
Tuberose and Rice in India
SO JOURNAL OF NEMATOLOGY
LA English
DT Article
DE Aphelenchoides besseyi; diagnosis; distribution; host; India;
morphology; rice; tuberose
AB The foliar nematode Aphelenchoides besseyi causes white tip disease in rice (Oryza sativa L.) and floral malady in tuberose (Polianthes tuberosa L.). This nematode is widely distributed in the rice fields of many states of India, including West Bengal (WB), Andhra Pradesh (AP), Madhya Pradesh (MP) and Gujarat (GT). In order to generate information on intraspecific variations of A. besseyi as well as to confirm the identity of the nematode species infecting these important crops, morphological observation was undertaken of A. besseyi isolated from tuberose and rice from WB and rice from AP, MP and GT. The molecular study was only done for rice and tuberose populations from AP and WB. The variations were observed among the populations in the tail, esophageal and anterior regions, including the occurrence of four as well as six lateral lines in the lateral fields. The morphometrics of observed populations showed variations and those could be regarded as a consequence of host-induced or geographical variations. PCR amplification of the rDNA ITS 1 and 2 region of rice (AP) and tuberose (WB) populations of A. besseyi generated one fragment of approximately 830 bp, and the size of the ITS region was 788 bp and 791 bp for tuberose and rice population, respectively. Alignment of the two sequences showed almost 100% similarity. Blast analysis revealed a very high level of similarity of both the Indian strains to a Russian population. The Indian and Russian strains could be differentiated using restriction enzyme Bccl. Host tests revealed that rice (cv. IET 4094), oat (cv. OS-6) and teosinte (cv. TL-1) showed a typical distortion due to the infection of A. besseyi. Five germplasm lines of oat showed no infection of the nematode under field conditions. Local cultivars of onion, maize, chrysanthemum, gladiolus, and Sorghum halepense were also not infected by A. besseyi.
C1 [Khan, Matiyar R.] Bidhan Chandra Krishi Viswavidyalaya, Dept Agr Entomol, Nadia 741235, W Bengal, India.
[Handoo, Zafar A.] USDA ARS, Nematol Lab, Beltsville, MD 20705 USA.
[Rao, Uma] Indian Agr Res Inst, Div Nematol, New Delhi 110012, India.
[Rao, S. B.] Ella Fdn, Hyderabad, Andhra Pradesh, India.
[Prasad, J. S.] Directorate Rice Res ICAR, Hyderabad, Andhra Pradesh, India.
RP Khan, MR (reprint author), Bidhan Chandra Krishi Viswavidyalaya, Dept Agr Entomol, Nadia 741235, W Bengal, India.
EM Zafar.Handoo@ars.usda.gov
NR 30
TC 5
Z9 5
U1 1
U2 8
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 391
EP 398
PG 8
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400011
PM 23482906
ER
PT J
AU Becker, JO
Witte, H
Becker, JS
Douhan, GW
Vogel, JP
Ploeg, A
AF Becker, J. Ole
Witte, H.
Becker, J. Smith
Douhan, G. W.
Vogel, J. P.
Ploeg, A.
TI BRACHYPODIUM DISTACHYON: A MODEL PLANT TO STUDY ROOT-KNOT
NEMATODE-POOIDEAE INTERACTIONS.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Becker, J. Ole; Witte, H.; Becker, J. Smith; Ploeg, A.] Univ Calif Riverside, Dept Nematol, Riverside, CA 92521 USA.
[Douhan, G. W.] Univ Calif Riverside, Dept Plant Pathol & Microbiol, Riverside, CA 92521 USA.
[Vogel, J. P.] USDA ARS, Western Reg Res Ctr, Genom & Gene Discovery Unit, Albany, CA 94710 USA.
NR 0
TC 0
Z9 0
U1 0
U2 9
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 452
EP 452
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400028
ER
PT J
AU Cabos, R
Wang, KH
Wang, I
AF Cabos, Roxana
Wang, K-H.
Wang, I.
TI POTENTIAL OF NEOACTINOLAIMUS AS A BIOLOGICAL CONTROL AGENT OF ROOT- KNOT
AND RENIFORM NEMATODES.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Cabos, Roxana] ARS, USDA, US Pacific Basin Agr Res Ctr, Hilo, HI 96720 USA.
[Wang, K-H.; Wang, I.] Univ Hawaii Manoa, Dept Plant & Environm Protect Sci, Honolulu, HI 96822 USA.
NR 0
TC 0
Z9 0
U1 0
U2 2
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 455
EP 455
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400037
ER
PT J
AU Carta, LK
Skantar, AM
AF Carta, Lynn K.
Skantar, A. M.
TI TAXONOMY AND PHYLOGENY OF SOME PANAGROLAIMUS NEMATODES ASSOCIATED WITH
AERIAL PLANT PARTS.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Carta, Lynn K.; Skantar, A. M.] ARS, USDA, Nematol Lab, Beltsville, MD 20705 USA.
NR 0
TC 0
Z9 0
U1 0
U2 3
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 456
EP 456
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400040
ER
PT J
AU Carta, LK
AF Carta, Lynn K.
TI OVERVIEW OF NATIONAL AND INTERNATIONAL NEMATODE COLLECTIONS.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Carta, Lynn K.] ARS, USDA, Nematol Lab, Beltsville, MD 20705 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 456
EP 456
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400039
ER
PT J
AU Davis, RF
Anderson, WF
AF Davis, Richard F.
Anderson, W. F.
TI IDENTIFICATION OF WIDELY VARYING LEVELS OF RESISTANCE TO MELOIDOGYNE
INCOGNITA IN SWEET SORGHUM.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Davis, Richard F.; Anderson, W. F.] USDA ARS, Tifton, GA 31793 USA.
NR 0
TC 0
Z9 0
U1 0
U2 2
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 459
EP 460
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400050
ER
PT J
AU Donald, P
Allen, PB
Tyler, DD
Sistani, KR
Tewolde, H
Walker, ER
AF Donald, Patricia
Allen, P. B.
Tyler, D. D.
Sistani, K. R.
Tewolde, H.
Walker, E. R.
TI EFFECT OF BROILER LITTER APPLICATION TO SOYBEAN CROP INFESTED WITH
SOYBEAN CYST NEMATODE
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Donald, Patricia] ARS, USDA, Crop Genet Res Unit, Jackson, TN 38301 USA.
[Allen, P. B.] Univ Tennessee, BESS, Knoxville, TN USA.
[Tyler, D. D.] Univ Tennessee, BESS, Jackson, TN 38301 USA.
[Sistani, K. R.] ARS, USDA, Anim Waste Management Unit, Bowling Green, KY 42104 USA.
[Tewolde, H.] ARS, USDA, Genet & Precis Agr Res Unit, Mississippi State, MS 39762 USA.
[Walker, E. R.] Univ Tennessee, Dept Plant Sci, Martin, TN 38238 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 461
EP 461
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400053
ER
PT J
AU Giblin-Davis, RM
Roda, AL
AF Giblin-Davis, Robin M.
Roda, A. L.
TI REAL TIME INTERNET INVASIVE PEST INSECT AND/OR NEMATODE IDENTIFICATION
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Giblin-Davis, Robin M.] Univ Florida, IFAS, Ft Lauderdale Res & Educ Ctr, Ft Lauderdale, FL 33314 USA.
[Roda, A. L.] ARS, USDA, APHIS, CPHST,Subtrop Res Stn, Miami, FL 33158 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 462
EP 463
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400058
ER
PT J
AU Handoo, Z
Mowery, JD
Chitwood, DJ
Carta, LK
AF Handoo, Zafar
Mowery, J. D.
Chitwood, D. J.
Carta, L. K.
TI THE USDA NEMATODE COLLECTION AND ITS DATABASE: VITAL ASSETS FOR
SYSTEMATICS RESEARCH AND IDENTIFICATION
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Handoo, Zafar; Mowery, J. D.; Chitwood, D. J.; Carta, L. K.] ARS, USDA, Nematol Lab, Beltsville, MD 20705 USA.
NR 0
TC 0
Z9 0
U1 0
U2 1
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 466
EP 467
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400067
ER
PT J
AU Ingham, R
Zasada, IA
Navarre, DA
Kroese, DR
Peetz, AB
Ballato, M
Wade, NM
AF Ingham, Russell
Zasada, I. A.
Navarre, D. A.
Kroese, D. R.
Peetz, A. B.
Ballato, M.
Wade, N. M.
TI HATCHING AND REPRODUCTION OF A NEW SPECIES OF GLOBODERA (G. ELLINGTONAE)
FOUND NEAR POWELL BUTTE OREGON
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Ingham, Russell; Wade, N. M.] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA.
[Zasada, I. A.; Kroese, D. R.; Peetz, A. B.; Ballato, M.] ARS, USDA, Hort Crops Res Unit, Corvallis, OR 97330 USA.
[Navarre, D. A.] ARS, USDA, Vegetable & Forage Crop Res Unit, Prosser, WA 99350 USA.
NR 0
TC 0
Z9 0
U1 0
U2 1
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 469
EP 470
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400074
ER
PT J
AU Kaplan, F
Alborn, HT
von Reuss, SH
Schroeder, FC
Teal, PE
AF Kaplan, Fatma
Alborn, H. T.
von Reuss, S. H.
Schroeder, F. C.
Teal, P. E.
TI NEMATODE DISPERSAL IS REGULATED BY AN EVALUTIONARY CONSERVED NEMATODE
COMMUNICATION SYSTEM.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Kaplan, Fatma; Alborn, H. T.; Teal, P. E.] ARS, USDA, Gainesville, FL 32608 USA.
[von Reuss, S. H.; Schroeder, F. C.] Cornell Univ, Boyce Thompson Inst, Ithaca, NY 14853 USA.
NR 0
TC 0
Z9 0
U1 2
U2 4
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 470
EP 471
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400076
ER
PT J
AU Kokalis-Burelle, N
Rosskopf, EN
AF Kokalis-Burelle, Nancy
Rosskopf, E. N.
TI SUSCEPTIBILITY OF SEVERAL WEEDS COMMON IN FLORIDA AGRICULTURAL
PRODUCTION TO MELOIDOGYNE SPP.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Kokalis-Burelle, Nancy; Rosskopf, E. N.] ARS, USDA, US Hort Res Lab, Ft Pierce, FL 34945 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 472
EP 473
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400081
ER
PT J
AU Meyer, SLF
Everts, KL
Gardener, BBM
AF Meyer, Susan L. F.
Everts, K. L.
Gardener, B. B. McSpadden
TI MIXED SPECIES COVER CROP GREEN MANURES FOR MANAGEMENT OF SOILBORNE
PATHOGENS ON TOMATO.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Meyer, Susan L. F.] ARS, USDA, Nematol Lab, Beltsville, MD 20705 USA.
[Everts, K. L.] Univ Maryland, Salisbury, MD USA.
[Everts, K. L.] Univ Delaware, Georgetown, DE USA.
[Gardener, B. B. McSpadden] Ohio State Univ, Wooster, OH USA.
NR 0
TC 0
Z9 0
U1 0
U2 6
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 479
EP 480
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400099
ER
PT J
AU Nyczepir, AP
Wood, BW
AF Nyczepir, Andrew P.
Wood, B. W.
TI INCIDENCE OF PEACH TREE SHORT LIFE INCREASED BY FOLIAR NICKEL
APPLICATION
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Nyczepir, Andrew P.; Wood, B. W.] ARS, USDA, SE Fruit & Tree Nut Res Lab, Byron, GA 31008 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 483
EP 483
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400108
ER
PT J
AU Sekora, D
Huffaker, A
Crow, WT
Kaplan, F
Alborn, HT
Mekete, T
AF Sekora, David
Huffaker, A.
Crow, W. T.
Kaplan, F.
Alborn, H. T.
Mekete, T.
TI THE EFFECT OF TRANSGENIC ENDOGENOUS DEFENSE ELICITORS IN ARABIDOPSIS ON
ROOT-KNOT NEMATODES (MELOIDOGYNE SPP.)
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Sekora, David; Crow, W. T.; Mekete, T.] Univ Florida, Dept Entomol & Nematol, Gainesville, FL 32611 USA.
[Huffaker, A.; Kaplan, F.; Alborn, H. T.] ARS, USDA, Ctr Med Agr & Vet Entomol, Gainesville, FL 32608 USA.
NR 0
TC 0
Z9 0
U1 0
U2 4
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 489
EP 489
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400124
ER
PT J
AU Shapiro-Ilan, DI
Leskey, TC
Wright, SE
Brown, I
Fall, L
AF Shapiro-Ilan, David I.
Leskey, T. C.
Wright, S. E.
Brown, I.
Fall, L.
TI ENTOMOPATHOGENIC NEMATODES: EFFECTS OF THE SOIL AGROECOSYSTEM ON
BIOLOGICAL CONTROL POTENTIAL.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Shapiro-Ilan, David I.] ARS, USDA, SE Fruit & Tree Nut Res Lab, Byron, GA 31008 USA.
[Leskey, T. C.; Wright, S. E.] ARS, USDA, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA.
[Brown, I.; Fall, L.] Georgia Southwestern State Univ, Dept Biol, Americus, GA 31709 USA.
NR 0
TC 0
Z9 0
U1 2
U2 6
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 489
EP 490
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400126
ER
PT J
AU Shirley, A
Nyczepir, AP
Brannen, PM
Noe, JP
AF Shirley, Andrew
Nyczepir, A. P.
Brannen, P. M.
Noe, J. P.
TI USE OF SPIROTETRAMAT IN THE POST-PLANT MANAGEMENT OF ROOT-KNOT NEMATODE
IN EGGPLANT AND PEACH.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Shirley, Andrew; Brannen, P. M.; Noe, J. P.] Univ Georgia, Dept Plant Pathol, Athens, GA 30602 USA.
[Nyczepir, A. P.] ARS, USDA, SE Fruit & Tree Nut Res Lab, Byron, GA 31008 USA.
NR 0
TC 0
Z9 0
U1 1
U2 3
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 491
EP 491
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400130
ER
PT J
AU Stelly, DM
Zheng, X
Bell, AA
Van Deynze, A
Ashrafi, H
Nichols, RL
AF Stelly, David M.
Zheng, X.
Bell, A. A.
Van Deynze, A.
Ashrafi, H.
Nichols, R. L.
TI COTTON IMPROVEMENT BY ALIEN INTROGRESSION OF RENIFROM NEMATODE
RESISTANCE FROM GOSSYPIUM LONGICALYX: AN OVERVIEW.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Stelly, David M.; Zheng, X.] Texas A&M Univ, College Stn, TX USA.
[Bell, A. A.] ARS, USDA, SPARC, College Stn, TX USA.
[Van Deynze, A.; Ashrafi, H.] Univ Calif Davis, Davis, CA 95616 USA.
[Nichols, R. L.] Cotton Inc, Cary, NC USA.
NR 0
TC 0
Z9 0
U1 0
U2 1
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 492
EP 492
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400133
ER
PT J
AU Stetina, SR
Ray, JD
Smith, JR
AF Stetina, Salliana R.
Ray, J. D.
Smith, J. R.
TI GLYCINE ACCESSIONS EVALUATED FOR RESISTANCE TO ROTYLENCHULUS RENIFORMIS.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Stetina, Salliana R.; Ray, J. D.; Smith, J. R.] ARS, USDA, Crop Genet Res Unit, Stoneville, MS 38776 USA.
NR 0
TC 0
Z9 0
U1 0
U2 1
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 493
EP 493
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400135
ER
PT J
AU Stetina, SR
Molin, WT
AF Stetina, Salliana R.
Molin, W. T.
TI GOSSYPIUM ACCESSIONS RESISTANT TO ROTYLENCHULUS RENIFORMIS VARY IN
SENSITIVITY TO THE HERBICIDE FLUOMETURON.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Stetina, Salliana R.] ARS, USDA, Crop Genet Res Unit, Stoneville, MS 38776 USA.
[Molin, W. T.] ARS, USDA, Crop Prod Syst Res Unit, Stoneville, MS 38776 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 493
EP 493
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400134
ER
PT J
AU Thies, JA
Ariss, JJ
Buckner, S
Hassell, RL
Levi, A
AF Thies, Judy A.
Ariss, Jennifer J.
Buckner, Sharon
Hassell, Richard L.
Levi, Amnon
TI RESPONSE OF CUCURBIT ROOTSTOCKS FOR GRAFTED MELON (CUCUMIS MELO) TO
SOUTHERN ROOT-KNOT NEMATODE, MELOIDOGYNE INCOGNITA.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Thies, Judy A.; Ariss, Jennifer J.; Buckner, Sharon; Levi, Amnon] ARS, US Vegetable Lab, USDA, Charleston, SC USA.
[Hassell, Richard L.] Clemson Univ, Charleston, SC USA.
NR 0
TC 0
Z9 0
U1 1
U2 4
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 494
EP 494
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400136
ER
PT J
AU Timper, P
Parajuli, G
AF Timper, Patricia
Parajuli, G.
TI SUPPRESSION OF MELOIDOGYNE INCOGNITA BY PAECILOMYCES LILACINUS IS
ENHANCED BY PLANTING COVER CROPS.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Timper, Patricia] ARS, USDA, Tifton, GA 31793 USA.
[Parajuli, G.] Univ Wageningen & Res Ctr, NL-6708 PB Wageningen, Netherlands.
NR 0
TC 2
Z9 2
U1 1
U2 1
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 494
EP 495
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400138
ER
PT J
AU Wang, CL
Ulloa, M
Roberts, PA
AF Wang Congli
Ulloa, M.
Roberts, P. A.
TI GENETIC AND PHYSICAL ANALYSIS OF MELOIDOGYNE INCOGNITA RESISTANCE GENES
ON AN INTERSPECIFIC GOSSYPIUM BARBADENSE x G. HIRSUTUM PROGENY.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Wang Congli; Roberts, P. A.] Univ Calif Riverside, Riverside, CA 92521 USA.
[Ulloa, M.] ARS, USDA, Cropping Syst Res Lab, Lubbock, TX 79415 USA.
NR 0
TC 0
Z9 0
U1 0
U2 2
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 495
EP 495
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400140
ER
PT J
AU Wubben, M
Callahan, FE
Jenkins, JN
Velten, J
AF Wubben, Martin
Callahan, F. E.
Jenkins, J. N.
Velten, J.
TI OVER-EXPRESSION OF MIC3 REDUCES COTTON SUSCEPTIBILITY TO ROOT-KNOT
NEMATODE.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Wubben, Martin; Callahan, F. E.; Jenkins, J. N.] ARS, USDA, Mississippi State, MS 39762 USA.
[Velten, J.] ARS, USDA, Lubbock, TX 79415 USA.
NR 0
TC 0
Z9 0
U1 0
U2 1
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 497
EP 498
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400146
ER
PT J
AU Senol, Y
Handoo, ZA
AF Senol, Yildiz
Handoo, Z. A.
TI OCCURRENCE OF PASTEURIA SPP. ATTACKING VARIOUS NEMATODES IN PASTURES OF
BINGOL, TURKEY.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Senol, Yildiz] Michigan State Univ, Dept Hort, E Lansing, MI 48824 USA.
[Handoo, Z. A.] ARS, USDA, Nematol Lab, Beltsville, MD 20705 USA.
NR 0
TC 1
Z9 1
U1 0
U2 0
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 499
EP 499
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400150
ER
PT J
AU Zasada, I
Peetz, A
Smythe, A
Howe, D
Cheam, D
Denver, D
AF Zasada, Inga
Peetz, A.
Smythe, A.
Howe, D.
Cheam, D.
Denver, D.
TI USING MITOGENOMIC AND NUCLEAR RIBOSOMAL SEQUENCE DATA TO INVESTIGATE THE
PHYLOGENY OF XIPHINEMA AMERICANUM POPULATIONS FROM THE UNITED STATES
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Zasada, Inga; Peetz, A.] USDA ARS, Hort Crops Res Lab, Corvallis, OR 97330 USA.
[Smythe, A.] Hamilton Coll, Dept Biol, Clinton, NY 13323 USA.
[Howe, D.; Cheam, D.; Denver, D.] Oregon State Univ, Dept Zool, Corvallis, OR 97330 USA.
NR 0
TC 0
Z9 0
U1 0
U2 1
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 500
EP 500
PG 1
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400154
ER
PT J
AU Zasada, IA
Walters, TW
AF Zasada, Inga A.
Walters, T. W.
TI RESPONSE OF RED RASPBERRY (RUBUS IDAEUS) VARIETIES TO PRATYLENCHUS
PENETRANS.
SO JOURNAL OF NEMATOLOGY
LA English
DT Meeting Abstract
C1 [Zasada, Inga A.] USDA ARS, Hort Crops Res Lab, Corvallis, OR 97330 USA.
[Walters, T. W.] Washington State Univ, Northwest Res & Educ Ctr, Mt Vernon, WA 98273 USA.
NR 0
TC 0
Z9 0
U1 2
U2 6
PU SOC NEMATOLOGISTS
PI MARCELINE
PA PO BOX 311, MARCELINE, MO 64658 USA
SN 0022-300X
J9 J NEMATOL
JI J. Nematol.
PD DEC
PY 2012
VL 44
IS 4
BP 500
EP 501
PG 2
WC Zoology
SC Zoology
GA 164ZR
UT WOS:000320452400155
ER
PT J
AU Bernhard, BC
Burdick, NC
Rathmann, RJ
Carroll, JA
Finck, DN
Jennings, MA
Young, TR
Johnson, BJ
AF Bernhard, B. C.
Burdick, N. C.
Rathmann, R. J.
Carroll, J. A.
Finck, D. N.
Jennings, M. A.
Young, T. R.
Johnson, B. J.
TI Chromium supplementation alters both glucose and lipid metabolism in
feedlot cattle during the receiving period
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE chromium propionate; glucose metabolism; glucose tolerance test; insulin
sensitivity test; lipid metabolism; receiving cattle
ID CALCIUM PROPIONATE; IMMUNE-RESPONSE; FEEDER CALVES; PICOLINATE;
PERFORMANCE; TRIPICOLINATE; RESISTANCE; GROWTH; STEERS; LAMBS
AB Crossbred steers (n = 20; 235 +/- 4 kg) were fed for 53 d during a receiving period to determine if supplementing chromium (Cr; KemTRACE Chromium Propionate 0.04%, Kemin Industries, Des Moines, IA) would alter glucose or lipid metabolism of newly received cattle. Chromium premixes were supplemented to add 0 (Con) or 0.2 mg/kg of Cr to the total diet on a DM basis. Cattle were fitted with jugular catheters on d 52. A glucose tolerance test (GTT) and an insulin sensitivity test (IST) were conducted on d 53. Blood samples were collected from -60 to 150 min relative to each infusion. Serum was isolated to determine glucose, insulin, and NEFA concentrations. Throughout GTT, no differences were detected in glucose concentrations, glucose clearance rates (k), or preinfusion insulin concentrations (P > 0.50), but insulin concentrations postinfusion tended (P = 0.06) to be greater for the Cr-supplemented steers. This caused an increase in the insulin to glucose ratio (I: G) from 0 to 150 min postinfusion for the Cr-supplemented steers (P = 0.03). In addition, NEFA concentrations during GTT were lower (P <= 0.01) for Cr-supplemented steers both preinfusion and postinfusion. During IST, there was no treatment effect on glucose concentrations preinfusion (P = 0.38), but postinfusion glucose concentrations were greater (P< 0.01) in the Cr-supplemented steers. The k of Cr-supplemented steers tended (P = 0.06) to be faster than Con steers from 30 to 45 min postinfusion. During the same test, there was no treatment effect detected for insulin concentrations (P > 0.33). The I: G were not affected by treatment (P > 0.40). Concentrations of NEFA were reduced (P < 0.01) both preinfusion and postinfusion during IST for Cr-supplemented steers. Results of this study indicate that supplementation of Cr can significantly alter lipid metabolism. This suggests that these steers had less dependence on lipid metabolism for energy or sensitivity of adipose tissue to antilipolytic signals was reduced. Results of glucose and insulin metabolism were inconsistently modified after a GTT and an IST.
C1 [Bernhard, B. C.; Rathmann, R. J.; Finck, D. N.; Jennings, M. A.; Young, T. R.; Johnson, B. J.] Texas Tech Univ, Dept Anim & Food Sci, Lubbock, TX 79409 USA.
[Burdick, N. C.; Carroll, J. A.] USDA ARS, Livestock Issues Res Unit, Lubbock, TX 79403 USA.
RP Johnson, BJ (reprint author), Texas Tech Univ, Dept Anim & Food Sci, Lubbock, TX 79409 USA.
EM bradley.johnson@ttu.edu
FU Gordon W. Davis Regent's Chair in Meat and Muscle Biology Endowment at
Texas Tech University; USDA-ARS Livestock Issues Research Unit, Lubbock,
TX
FX This research was supported in part by funding from the Gordon W. Davis
Regent's Chair in Meat and Muscle Biology Endowment at Texas Tech
University. The USDA-ARS Livestock Issues Research Unit, Lubbock, TX,
also contributed funding for the completion of this research.
NR 26
TC 10
Z9 13
U1 2
U2 18
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 13
BP 4857
EP 4865
DI 10.2527/jas.2011-4982
PG 9
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 154IM
UT WOS:000319668000021
PM 23048144
ER
PT J
AU Buttrey, EK
Cole, NA
Jenkins, KH
Meyer, BE
McCollum, FT
Preece, SLM
Auvermann, BW
Heflin, KR
MacDonald, JC
AF Buttrey, E. K.
Cole, N. A.
Jenkins, K. H.
Meyer, B. E.
McCollum, F. T., III
Preece, S. L. M.
Auvermann, B. W.
Heflin, K. R.
MacDonald, J. C.
TI Effects of twenty percent corn wet distillers grains plus solubles in
steam-flaked and dry-rolled corn-based finishing diets on heifer
performance, carcass characteristics, and manure characteristics
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE corn processing; distillers grains; finishing cattle; manure
characteristics
ID FEEDLOT CATTLE PERFORMANCE; IN-VITRO FERMENTATION; AMMONIA EMISSIONS;
BEEF-CATTLE; PROCESSING METHOD; CRUDE PROTEIN; MASS-BALANCE;
BY-PRODUCTS; SORGHUM; DIGESTIBILITY
AB Two hundred sixty-four crossbred heifers (initial BW = 354 kg +/- 0.5) were used to determine effects of corn processing method and wet distillers grains plus solubles (WDGS) inclusion in finishing diets on animal performance, carcass characteristics, and manure characteristics. The study was conducted as a randomized complete block with a 2 x 2 factorial arrangement of treatments. Dietary treatments included steam-flaked corn (SFC)- and dry-rolled corn (DRC)-based finishing diets containing 0 or 20% WDGS (0SFC, 20SFC, 0DRC, and 20DRC, respectively). Heifers averaged 154 d on feed and were marketed in 3 groups. There were no interactions between corn processing method and WDGS detected (P >= 0.29) for any performance or carcass response variables. Heifers fed diets containing WDGS tended to have greater final BW (P = 0.10) and increased G: F (P = 0.08) compared with heifers fed diets without WDGS. Heifers fed SFC-based diets consumed 7% less feed (P < 0.01) and were 9% more efficient (P < 0.01) than heifers fed DRC-based diets. Carcass characteristics were not affected by corn processing method or WDGS inclusion (P >= 0.16). Intakes of OM, N, P, and K were greater (P <= 0.05) for heifers fed DRC-based diets than those fed SFC-based diets, which resulted in greater net accumulation of the nutrients in the manure (P <= 0.04). Heifers fed diets containing WDGS had greater (P < 0.01) intakes of N, P, and K than heifers fed diets without WDGS. As a result, a greater net accumulation of P and K (P <= 0.03) and N (P = 0.10) were present in the manure from cattle fed diets containing WDGS compared with those fed diets without WDGS. There was no interaction (P >= 0.16) between corn processing and WDGS on N volatilization losses. Nitrogen volatilization losses from manure (expressed as a percentage of intake and g.heifer(-1).d(-1)) were greater (P < 0.01) for heifers fed SFC-based diets than heifers fed DRC-based diets. Feeding DRC-based finishing diets to heifers resulted in increased manure production and nutrient excretion and decreased N volatilization. Both corn processing method and WDGS inclusion affected animal performance and manure characteristics.
C1 [Buttrey, E. K.; Jenkins, K. H.; Meyer, B. E.; Preece, S. L. M.; Auvermann, B. W.; MacDonald, J. C.] Texas A&M AgriLife Res, Amarillo, TX 79106 USA.
[Buttrey, E. K.; MacDonald, J. C.] West Texas A&M Univ, Dept Agr Sci, Canyon, TX 79016 USA.
[Cole, N. A.] USDA ARS, Bushland, TX 79012 USA.
[McCollum, F. T., III; Auvermann, B. W.; Heflin, K. R.] Texas A&M AgriLife Extens Serv, Amarillo, TX 79106 USA.
RP MacDonald, JC (reprint author), Texas A&M AgriLife Res, Amarillo, TX 79106 USA.
EM jcmacdonald@ag.tamu.edu
FU Texas Cattle Feeders Association
FX This research was supported, in part, by the Texas Cattle Feeders
Association. The mention of trade or manufacturer names is made for
information only and does not imply an endorsement, recommendation, or
exclusion by USDA-ARS or Texas AgriLife Research. The authors
acknowledge Merck Animal Health, De Soto, KS, for donating
pharmaceutical products used in this research.
NR 61
TC 0
Z9 0
U1 3
U2 7
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 13
BP 5086
EP 5098
DI 10.2527/jas.2012-5198
PG 13
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 154IM
UT WOS:000319668000045
PM 22851239
ER
PT J
AU Mulliniks, JT
Sawyer, JE
Mathis, CP
Cox, SH
Petersen, MK
AF Mulliniks, J. T.
Sawyer, J. E.
Mathis, C. P.
Cox, S. H.
Petersen, M. K.
TI Winter protein management during late gestation alters range cow and
steer progeny performance
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE beef cattle; fetal programming; protein supplementation; reproduction
ID BEEF-COWS; FEEDLOT PERFORMANCE; EFFICIENCY; NUTRITION; ENERGY
AB A 4-yr study was conducted at Corona Range and Livestock Research Center, Corona, NM, to establish if a protein-dense self-fed supplement could substitute for a traditional hand-fed (range cube) supplement that is less protein dense and minimize or maintain cow BW and BCS during late gestation and the subsequent steer progeny feedlot performance, health, and economic viability. Late gestation cows received one of 3 supplementation strategies: 1) 36% CP cottonseed meal base supplement (CSM; positive control) fed 3 times per week, 2) self-fed supplement (SMP) comprising 50% animal protein sources (blood meal and feather meal) and 50% trace mineral package, or 3) brief and intermittent supplementation of CSM based on periods of acute environmental stress (VAR; negative control) by ranch management. Initiation of supplementation varied across years due to changing forage conditions and climatically imposed grazing constraints but always ended approximately 2 wks before calving each year. Across all 4 yr, supplement consumption averaged 0.65, 0.21, and 0.04 kg.head(-1).d(-1) for CSM, SMP, and VAR, respectively. After weaning, steers were preconditioned for 45 d and were received and treated as custom fed commercial cattle at a feedlot in mid November each year. Cow BW and BCS were not influenced (P >= 0.13) by prepartum supplementation; however, the strategy did have an effect on BW and BCS change with cows managed in the VAR group. Cows managed in the VAR group lost the greatest (P < 0.05) amount of BW and BCS whereas no differences were measured between CSM and SMP groups. Prepartum supplementation strategies did not influence (P = 0.98) pregnancy rates. Calf weaning, initial feedlot and final BW, and HCW were unaffected (P >= 0.80) by prepartum supplementation of the dam. Steers from dams fed CSM and VAR had a greater percentage treated for sickness than SMP steers (P = 0.03), which resulted in a tendency (P = 0.07) for medicine costs to be greater in steers from CSM and VAR cows. The use of a self-fed package supplement was equally effective as use of a traditional hand-fed, oilseed-based supplement in maintaining BW and BCS during late gestation. In addition, these results imply that although nutrition treatment of cows during the prenatal period had no effect on calf growth performance, calves from cows fed SMP had improved feedlot health.
C1 [Mulliniks, J. T.; Cox, S. H.] New Mexico State Univ, Dept Anim & Range Sci, Las Cruces, NM 88003 USA.
[Sawyer, J. E.] Texas A&M Univ, Dept Anim Sci, College Stn, TX 77843 USA.
[Mathis, C. P.] New Mexico State Univ, Extens Anim Sci & Nat Resources Dept, Las Cruces, NM 88003 USA.
[Petersen, M. K.] USDA ARS, Ft Keogh Livestock & Range Res Lab, Miles City, MT 59301 USA.
RP Petersen, MK (reprint author), USDA ARS, Ft Keogh Livestock & Range Res Lab, Miles City, MT 59301 USA.
EM mark.petersen@ars.usda.gov
NR 17
TC 2
Z9 2
U1 1
U2 10
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 13
BP 5099
EP 5106
DI 10.2527/jas.2012-5535
PG 8
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 154IM
UT WOS:000319668000046
PM 22851236
ER
PT J
AU McKeith, RO
Gray, GD
Hale, DS
Kerth, CR
Griffin, DB
Savell, JW
Raines, CR
Belk, KE
Woerner, DR
Tatum, JD
Igo, JL
VanOverbeke, DL
Mafi, GG
Lawrence, TE
Delmore, RJ
Christensen, LM
Shackelford, SD
King, DA
Wheeler, TL
Meadows, LR
O'Connor, ME
AF McKeith, R. O.
Gray, G. D.
Hale, D. S.
Kerth, C. R.
Griffin, D. B.
Savell, J. W.
Raines, C. R.
Belk, K. E.
Woerner, D. R.
Tatum, J. D.
Igo, J. L.
VanOverbeke, D. L.
Mafi, G. G.
Lawrence, T. E.
Delmore, R. J., Jr.
Christensen, L. M.
Shackelford, S. D.
King, D. A.
Wheeler, T. L.
Meadows, L. R.
O'Connor, M. E.
TI National Beef Quality Audit-2011: Harvest-floor assessments of targeted
characteristics that affect quality and value of cattle, carcasses, and
byproducts
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE audit; beef quality; carcass
ID ESCHERICHIA-COLI O157-H7; RESPIRATORY-DISEASE; FEEDLOT CATTLE; QUANTITY
ATTRIBUTES; TREATMENT RECORDS; PROCESSING PLANT; FED STEERS; SLAUGHTER;
IMPACT; CONTAMINATION
AB The National Beef Quality Audit-2011 (NBQA-2011) was conducted to assess targeted characteristics on the harvest floor that affect the quality and value of cattle, carcasses, and byproducts. Survey teams evaluated approximately 18,000 cattle/carcasses between May and November 2011 in 8 beef processing facilities. Cattle identification methods were lot visual tags (85.7%), individual visual tags (50.6%), electronic tags (20.1%), metal-clip tags (15.7%), other (5.3%), none (2.5%), and wattles (0.5%). Hide colors or breed types were black (61.1%), red (12.8%), yellow (8.7%), Holstein (5.5%), brown (5.0%), gray (5.0%), white (1.4%), and brindle (1.0%). Brand frequencies were none (55.2%), 1 (40.4%), 2 (4.4%), and 3 or more (0.04%) brands, and brands were located on the butt (35.2%), side (9.0%), and shoulder (2.5%). Hide locations of mud or manure were no mud/manure (49.2%), legs (36.8%), belly (23.7%), side (14.9%), top-line (11.0%), and tail region (13.7%). There were 76.2% of cattle without horns, and the majority of those with horns (71.6%) were between 0 cm and 12.7 cm in length. Permanent incisor numbers were zero (87.3%), 1 (1.4%), 2 (8.0%), 3 (0.9%), 4 (1.9%), 5 (0.3%), 6 (0.2%), 7 (0.1%), and 8 (0.02%). Most carcasses (77.0%) were not bruised, 18.7% had 1 bruise, 3.4% had 2 bruises, 0.6% had 3 bruises, and 0.3% had more than 3 bruises. Bruise locations were loin (50.1%), rib (21.3%), chuck (13.8%), round (7.3%), and brisket/flank/plate (7.5%). Condemnation item and incidence were whole carcass (none recorded), liver (20.9%), lungs (17.3%), tongue (10.0%), viscera (9.3%), and head (7.2%). Compared with the NBQA-2005, the NBQA-2011 had an increased percentage of black-hided cattle (56.3 vs. 61.1%), more cattle with brands (38.7 vs. 44.8%), and more cattle with some form of identification (93.3 vs. 97.5%). In addition, there was a lesser percentage of carcasses with bruising in 2011 (23.0%) than in 2005 (35.2%), as well as a smaller percentage of carcasses with more than 1 bruise (2005 = 9.4% vs. 2011 = 4.2%). Compared with the 2005 audit, a similar percentage of the cattle were deemed 30 mo of age or older using dentition (2005 = 2.7% vs. 2011 = 3.3%). The information from NBQA-2011 helps the beef industry measure progress against previous NBQA assessments and provides a benchmark for future educational and research activities.
C1 [McKeith, R. O.; Gray, G. D.; Hale, D. S.; Kerth, C. R.; Griffin, D. B.; Savell, J. W.] Texas A&M Univ, Texas A&M AgriLife Res, Dept Anim Sci, College Stn, TX 77843 USA.
[Raines, C. R.] Penn State Univ, Dept Dairy & Anim Sci, University Pk, PA 16082 USA.
[Belk, K. E.; Woerner, D. R.; Tatum, J. D.; Igo, J. L.] Colorado State Univ, Dept Anim Sci, Ft Collins, CO 80523 USA.
[VanOverbeke, D. L.; Mafi, G. G.] Oklahoma State Univ, Dept Anim Sci, Stillwater, OK 74078 USA.
[Lawrence, T. E.] West Texas A&M Univ, Dept Agr Sci, Canyon, TX 79016 USA.
[Delmore, R. J., Jr.; Christensen, L. M.] Calif Polytech State Univ San Luis Obispo, Dept Anim Sci, San Luis Obispo, CA 93407 USA.
[Shackelford, S. D.; King, D. A.; Wheeler, T. L.] USDA ARS, Roman L Hruska US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
[Meadows, L. R.] USDA AMS, Golden, CO 80402 USA.
[O'Connor, M. E.] USDA AMS, Washington, DC 20250 USA.
RP Savell, JW (reprint author), Texas A&M Univ, Texas A&M AgriLife Res, Dept Anim Sci, College Stn, TX 77843 USA.
EM j-savell@tamu.edu
RI Savell, Jeffrey/C-2434-2008
OI Savell, Jeffrey/0000-0003-0354-1286
FU Beef Checkoff, Cattlemen's Beef Board, Centennial, CO
FX This study was funded, in part, by the Beef Checkoff, Cattlemen's Beef
Board, Centennial, CO.
NR 32
TC 12
Z9 12
U1 0
U2 15
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 13
BP 5135
EP 5142
DI 10.2527/jas.2012-5477
PG 8
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 154IM
UT WOS:000319668000050
PM 22952370
ER
PT J
AU Moore, MC
Gray, GD
Hale, DS
Kerth, CR
Griffin, DB
Savell, JW
Raines, CR
Belk, KE
Woerner, DR
Tatum, JD
Igo, JL
VanOverbeke, DL
Mafi, GG
Lawrence, TE
Delmore, RJ
Christensen, LM
Shackelford, SD
King, DA
Wheeler, TL
Meadows, LR
O'Connor, ME
AF Moore, M. C.
Gray, G. D.
Hale, D. S.
Kerth, C. R.
Griffin, D. B.
Savell, J. W.
Raines, C. R.
Belk, K. E.
Woerner, D. R.
Tatum, J. D.
Igo, J. L.
VanOverbeke, D. L.
Mafi, G. G.
Lawrence, T. E.
Delmore, R. J., Jr.
Christensen, L. M.
Shackelford, S. D.
King, D. A.
Wheeler, T. L.
Meadows, L. R.
O'Connor, M. E.
TI National Beef Quality Audit-2011: In-plant survey of targeted carcass
characteristics related to quality, quantity, value, and marketing of
fed steers and heifers
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE beef quality; carcass; market survey; meat grade
ID PRODUCER-RELATED DEFECTS; ZILPATEROL HYDROCHLORIDE; CATTLE; ATTRIBUTES;
TRAITS
AB The 2011 National Beef Quality Audit (NBQA-2011) assessed the current status of quality and consistency of fed steers and heifers. Beef carcasses (n = 9,802), representing approximately 10% of each production lot in 28 beef processing facilities, were selected randomly for the survey. Carcass evaluation for the cooler assessment of this study revealed the following traits and frequencies: sex classes of steer (63.5%), heifer (36.4%), cow (0.1%), and bullock (0.03%); dark cutters (3.2%); blood splash (0.3%); yellow fat (0.1%); calloused rib eye (0.05%); overall maturities of A (92.8%), B (6.0%), and C or greater (1.2%); estimated breed types of native (88.3%), dairy type (9.9%), and Bos indicus (1.8%); and country of origin of United States (97.7%), Mexico (1.8%), and Canada (0.5%). Certified or marketing program frequencies were age and source verified (10.7%), <= A(40) (10.0%), Certified Angus Beef (9.3%), Top Choice (4.1%), natural (0.6%), and Non-Hormone-Treated Cattle (0.5%); no organic programs were observed. Mean USDA yield grade (YG) traits were USDA YG (2.9), HCW (374.0 kg), adjusted fat thickness (1.3 cm), LM area (88.8 cm2), and KPH (2.3%). Frequencies of USDA YG distributions were YG 1, 12.4%; YG 2, 41.0%; YG 3, 36.3%; YG 4, 8.6%; and YG 5, 1.6%. Mean USDA quality grade (QG) traits were USDA quality grade (Select(93)), marbling score (Small(40)), overall maturity (A(59)), lean maturity (A(54)), and skeletal maturity (A(62)). Frequencies of USDA QG distributions were Prime, 2.1%; Choice, 58.9%; Select, 32.6%; and Standard or less, 6.3%. Marbling score distribution was Slightly Abundant or greater, 2.3%; Moderate, 5.0%; Modest, 17.3%; Small, 39.7%; Slight, 34.6%; and Traces or less, 1.1%. Carcasses with QG of Select or greater and YG 3 or less represented 85.1% of the sample. This is the fifth benchmark study measuring targeted carcass characteristics, and information from this survey will continue to help drive progress in the beef industry. Results will be used in extension and educational programs as teaching tools to inform beef producers and industry professionals of the current state of the U.S. beef industry.
C1 [Moore, M. C.; Gray, G. D.; Hale, D. S.; Kerth, C. R.; Griffin, D. B.; Savell, J. W.] Texas A&M Univ, Texas A&M AgriLife Res, Dept Anim Sci, College Stn, TX 77843 USA.
[Raines, C. R.] Penn State Univ, Dept Dairy & Anim Sci, University Pk, PA 16082 USA.
[Belk, K. E.; Woerner, D. R.; Tatum, J. D.; Igo, J. L.] Colorado State Univ, Dept Anim Sci, Ft Collins, CO 80523 USA.
[VanOverbeke, D. L.; Mafi, G. G.] Oklahoma State Univ, Dept Anim Sci, Stillwater, OK 74078 USA.
[Lawrence, T. E.] W Texas State Univ, Dept Agr Sci, Canyon, TX 79016 USA.
[Delmore, R. J., Jr.; Christensen, L. M.] Calif Polytech State Univ San Luis Obispo, Dept Anim Sci, San Luis Obispo, CA 93407 USA.
[Shackelford, S. D.; King, D. A.; Wheeler, T. L.] USDA ARS, Roman L Hruska US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
[Meadows, L. R.] Agr Mkt Service USDA, Golden, CO 80402 USA.
[O'Connor, M. E.] Agr Mkt Service USDA, Washington, DC 20250 USA.
RP Savell, JW (reprint author), Texas A&M Univ, Texas A&M AgriLife Res, Dept Anim Sci, College Stn, TX 77843 USA.
EM j-savell@tamu.edu
RI Savell, Jeffrey/C-2434-2008
OI Savell, Jeffrey/0000-0003-0354-1286
FU Beef Checkoff, Cattlemen's Beef Board, Centennial, CO
FX This project was funded in part by the Beef Checkoff, Cattlemen's Beef
Board, Centennial, CO.
NR 14
TC 22
Z9 22
U1 2
U2 26
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 13
BP 5143
EP 5151
DI 10.2527/jas.2012-5550
PG 9
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 154IM
UT WOS:000319668000051
PM 22952369
ER
PT J
AU Gray, GD
Moore, MC
Hale, DS
Kerth, CR
Griffi, DB
Savell, JW
Raines, CR
Lawrence, TE
Belk, KE
Woerner, DR
Tatum, JD
VanOverbeke, DL
Mafi, GG
Delmore, RJ
Shackelford, SD
King, DA
Wheeler, TL
Meadows, LR
O'Connor, ME
AF Gray, G. D.
Moore, M. C.
Hale, D. S.
Kerth, C. R.
Griffi, D. B.
Savell, J. W.
Raines, C. R.
Lawrence, T. E.
Belk, K. E.
Woerner, D. R.
Tatum, J. D.
VanOverbeke, D. L.
Mafi, G. G.
Delmore, R. J., Jr.
Shackelford, S. D.
King, D. A.
Wheeler, T. L.
Meadows, L. R.
O'Connor, M. E.
TI National Beef Quality Audit-2011: Survey of instrument grading
assessments of beef carcass characteristics
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE beef quality; carcass; instrument grading; market survey; meat grade
ID PRODUCER-RELATED DEFECTS; DARK-CUTTING BEEF; QUANTITY ATTRIBUTES;
TARGETED CATTLE; FED STEERS; AUGMENTATION; THICKNESS; HEIFERS
AB The instrument grading assessments for the 2011 National Beef Quality Audit evaluated seasonal trends of beef carcass quality and yield attributes over the course of the year. One week of instrument grading data, HCW, gender, USDA quality grade (QG), and yield grade (YG) factors, were collected every other month (n = 2,427,074 carcasses) over a 13-mo period (November 2010 through November 2011) from 4 beef processing corporations, encompassing 17 federally inspected beef processing facilities, to create a "snapshot" of carcass quality and yield attributes and trends from carcasses representing approximately 8.5% of the U.S. fed steer and heifer population. Mean yield traits were YG (2.86), HCW (371.3 kg), fat thickness (1.19 cm.), and LM area (88.39 cm(2)). The YG distribution was YG 1, 15.7%; YG 2, 41.0%; YG 3, 33.8%; YG 4, 8.5%; and YG 5, 0.9%. Distribution of HCW was <272.2 kg, 1.6%; 272.2 to 453.6 kg, 95.1%; and >= 453.6 kg, 3.3%. Monthly HCW means were November 2010, 381.3 kg; January 2011, 375.9 kg; March 2011, 366.2 kg; May 2011, 357.9 kg; July 2011, 372.54 kg; September 2011, 376.1 kg; and November 2011, 373.5 kg. The mean fat thickness for each month was November 2010, 1.30 cm; January 2011, 1.22 cm; March 2011, 1.17 cm; May 2011, 1.12 cm; July 2011, 1.19 cm; September 2011, 1.22 cm; and November 2011, 1.22 cm. The overall average marbling score was Small(49). The USDA QG distribution was Prime, 2.7%; Top Choice, 22.9%; Commodity Choice, 38.6%; and Select, 31.5%. Interestingly, from November to May, seasonal decreases (P < 0.001) in HCW and fat thicknesses were accompanied by increases (P < 0.001) in marbling. These data present the opportunity to further investigate the entire array of factors that determine the value of beef. Data sets using the online collection of electronic data will likely be more commonly used when evaluating the U.S. fed steer and heifer population in future studies.
C1 [Gray, G. D.; Moore, M. C.; Hale, D. S.; Kerth, C. R.; Griffi, D. B.; Savell, J. W.] Texas A&M Univ, Texas A&M AgriLife Res, Dept Anim Sci, College Stn, TX 77843 USA.
[Raines, C. R.] Penn State Univ, Dept Dairy & Anim Sci, University Pk, PA 16082 USA.
[Lawrence, T. E.] W Texas State Univ, Dept Agr Sci, Canyon, TX 79016 USA.
[Belk, K. E.; Woerner, D. R.; Tatum, J. D.] Colorado State Univ, Dept Anim Sci, Ft Collins, CO 80523 USA.
[VanOverbeke, D. L.; Mafi, G. G.] Oklahoma State Univ, Dept Anim Sci, Stillwater, OK 74078 USA.
[Delmore, R. J., Jr.] Calif Polytech State Univ San Luis Obispo, Dept Anim Sci, San Luis Obispo, CA 93407 USA.
[Shackelford, S. D.; King, D. A.; Wheeler, T. L.] USDA ARS, Roman L Hruska US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
[Meadows, L. R.] Agr Mkt Service USDA, Golden, CO 80402 USA.
[O'Connor, M. E.] Agr Mkt Service USDA, Washington, DC 20250 USA.
RP Savell, JW (reprint author), Texas A&M Univ, Texas A&M AgriLife Res, Dept Anim Sci, College Stn, TX 77843 USA.
EM j-savell@tamu.edu
RI Savell, Jeffrey/C-2434-2008
OI Savell, Jeffrey/0000-0003-0354-1286
FU Beef Checkoff, Cattlemen's Beef Board, Centennial, CO
FX This project was funded in part by the Beef Checkoff, Cattlemen's Beef
Board, Centennial, CO.
NR 23
TC 5
Z9 5
U1 1
U2 4
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 13
BP 5152
EP 5158
DI 10.2527/jas.2012-5551
PG 7
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 154IM
UT WOS:000319668000052
PM 22952354
ER
PT J
AU Rakhshandeh, A
Dekkers, JCM
Kerr, BJ
Weber, TE
English, J
Gabler, NK
AF Rakhshandeh, A.
Dekkers, J. C. M.
Kerr, B. J.
Weber, T. E.
English, J.
Gabler, N. K.
TI Effect of immune system stimulation and divergent selection for residual
feed intake on digestive capacity of the small intestine in growing pigs
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE ileal digestibility; immune system stimulation; nutrient transport;
residual feed intake
ID RATS; MUCINS
AB Little is known of the consequences of divergent selection for residual feed intake (RFI) on intestinal digestion capacity, particularly during immune system stimulation (ISS). Our objective was to evaluate the impact of ISS and divergent selection for RFI on apparent ileal digestibility (AID) and apparent fecal digestibility (AFD) of nutrients and intestinal nutrient active transport and barrier function. Twenty-eight gilts (63 +/- 4 kg BW) from low RFI (LRFI; n = 14) and high RFI (HRFI; n = 14) Yorkshire lines were randomly selected from the Iowa State University RFI herd. Following adaptation, 8 pigs in each line were injected intramuscularly and every 48 h for 7 d with increasing amounts of Escherichia coli lipopolysaccharide (ISS+). Remaining pigs were injected with saline (ISS-). Pigs were then euthanized and ileal digesta was collected for measuring AID of nutrients. Fecal samples were collected on a daily basis and pooled for measuring AFD of nutrients. A segment of ileum was used to measure nutrient transport and transepithelial resistance (TER) and/or barrier integrity by Ussing chambers. No effects of line or its interaction with ISS on AID of CP (N x 6.25) and OM, TER, and active nutrients transport were observed. However, ISS decreased (P < 0.05) and tended to (P < 0.1) decrease AID of CP and OM, respectively. Decrease in AFD of CP as result of ISS was greater in the LRFI line compared to the HRFI line (P < 0.05). Relative to ISS-, active glucose and P transport was greater in ISS+ pigs (P < 0.05). Genetic selection for LRFI increases the AFD but has no effect on AID of nutrients. It also reduces the total tract digestive capacity of growing pigs during ISS. Immune system stimulation affects both AID and AFD of dietary CP.
C1 [Rakhshandeh, A.; Dekkers, J. C. M.; English, J.; Gabler, N. K.] Iowa State Univ, Dept Anim Sci, Ames, IA 50011 USA.
[Kerr, B. J.] USDA ARS, Ames, IA USA.
[Weber, T. E.] Elanco Anim Hlth, Greenfield, IN 46140 USA.
RP Gabler, NK (reprint author), Iowa State Univ, Dept Anim Sci, Ames, IA 50011 USA.
EM ngabler@iastate.edu
FU Agriculture and Food Research Initiative, USDA National Institute of
Food and Agriculture [2011-68004-30336]
FX This research was supported by the Agriculture and Food Research
Initiative competitive grant number 2011-68004-30336 form the USDA
National Institute of Food and Agriculture.
NR 14
TC 15
Z9 17
U1 3
U2 22
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
SU 4
BP 233
EP 235
DI 10.2527/jas53976
PG 3
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 154KE
UT WOS:000319673100076
PM 23365340
ER
PT J
AU Cabos, RYM
Tsang, MMC
Hara, AH
Kawabata, A
AF Cabos, R. Y. M.
Tsang, M. M. C.
Hara, A. H.
Kawabata, A.
TI ERADICATION OF ROTYLENCHULUS RENIFORMIS FROM A VOLCANIC CINDER MEDIUM
USING STEAM STERILIZATION
SO NEMATROPICA
LA English
DT Article
DE certified potting medium; nematode certification; ornamental industry;
plant trade; regulatory; reniform nematode
ID SOIL; DISINFESTATION; FUMIGATION
AB In Hawaii, reniform nematode, Rotylenchulus reniformis, damages many agricultural crops and disrupts plant trade because of the regulations imposed against this pest by the state of California and other national and international markets. Nurseries in Hawaii must follow strict certification requirements to export potted plants to these markets where R. reniformis is not established. Mined volcanic cinder, utilized as a potting medium, may contain reniform nematode and needs to be disinfested for use by nematode certified nurseries. Two steam treatment systems of different capacities were evaluated for their efficacy to disinfest the cinder of R. reniformis. The low capacity system consisted of a portable steam generator connected to a steam cart with a media volume of 1.68 m(3). The large capacity system consisted of a dump truck bed modified with an intake manifold and steam distribution pipes connected to a large capacity steam generating boiler to sterilize a 24.5 m(3) load of media. Packets of nematode-infested cinder containing R. reniformis-infested roots of Ipomoea batatas were buried in various locations and different depths in the cinder contained in the two steaming systems. Temperature probes were placed inside or adjacent to the packets and observed during the sterilization process. The steam did not penetrate and distribute in the medium at a consistent rate in both steaming systems resulting in cold spots. These were identified and monitored to ensure that treatment time was sufficient to reach target temperature throughout the medium mass. Once the steam was evenly distributed both systems were successful at eradicating all live R. reniformis.
C1 [Cabos, R. Y. M.] ARS, USDA, US Pacific Basin Agr Res Ctr, Hilo, HI 96720 USA.
[Tsang, M. M. C.] Univ Hawaii, Coll Agr Forestry & Nat Resource Management, Hilo, HI 96720 USA.
[Hara, A. H.; Kawabata, A.] Univ Hawaii Manoa, Coll Trop Agr & Human Resources, Hilo, HI 96720 USA.
RP Cabos, RYM (reprint author), ARS, USDA, US Pacific Basin Agr Res Ctr, 64 Nowelo St, Hilo, HI 96720 USA.
EM roxana.cabos@ars.usda.gov
NR 13
TC 0
Z9 0
U1 3
U2 4
PU ORGANIZATION TROP AMER NEMATOLOGISTS
PI AUBURN
PA AUBURN UNIV DEPT PLANT PATHOLOGY, AUBURN, AL 36849 USA
SN 0099-5444
J9 NEMATROPICA
JI Nematropica
PD DEC
PY 2012
VL 42
IS 2
BP 245
EP 252
PG 8
WC Zoology
SC Zoology
GA 142OS
UT WOS:000318807500009
ER
PT J
AU Nyczepir, AP
Wood, BW
AF Nyczepir, A. P.
Wood, B. W.
TI ASSESSMENT OF SELECTED PECAN AND PEACH ROOTSTOCKS FOR RESISTANCE TO
MELOIDOGYNE PARTITYLA
SO NEMATROPICA
LA English
DT Article
DE Carya illinoinensis; host parasitic relationship; management;
Meloidogyne arenaria; Meloidogyne incognita; Meloidogyne partityla;
peach; pecan; Prunus persica; resistance; root knot nematode;
susceptible
ID PHENOTYPES
AB Open pollinated pecan seedling rootstocks were evaluated for resistance to Meloidogyne partityla, M. arenaria, and M. incognita in the greenhouse. Rootstocks tested included seedlings derived from open pollinated seed of 'Apache', 'Caddo', 'Curtis', 'Moneymaker', 'Pawnee', 'Schley', 'Stuart', and 'Wichita' parent trees. 'Elliott', a susceptible pecan rootstock for M. partityla, was included as the control. All open pollinated pecan rootstocks supported nematode reproduction as indicated by number of egg masses per plant, number of eggs per plant, and number of eggs per gram dry root, regardless of nematode species. Reproduction by M. partityla was greater(P < 0.05) on all pecan rootstocks than M. incognita and M. arenaria, indicating that pecan is a better host for M. partityla. All pecan seed sources were rated as good hosts (susceptible) to M. partityla infection and as poor hosts (resistant) to M. incognita and M. arenaria. In another greenhouse study, open pollinated 'Elliott' seedlings supported greater (P < 0.01) reproduction of M. partityla than seedlings from Guardian (R), 'Lovell', 'Halford', 'Flordaguard' and 'Nemaguard' peach. All peach rootstocks were rated as non-hosts (highly resistant) to M. partityla infection. Interplanting pecan and peach trees in a commercial orchard environment does not appear to exacerbate the M. partityla population density between the two perennial crops in the southeastern United States.
C1 [Nyczepir, A. P.; Wood, B. W.] USDA ARS, SE Fruit & Tree Nut Res Lab, Byron, GA 31008 USA.
RP Nyczepir, AP (reprint author), USDA ARS, SE Fruit & Tree Nut Res Lab, 21 Dunbar Rd, Byron, GA 31008 USA.
EM andy.nyczepir@ars.usda.gov
NR 21
TC 1
Z9 1
U1 2
U2 9
PU ORGANIZATION TROP AMER NEMATOLOGISTS
PI AUBURN
PA AUBURN UNIV DEPT PLANT PATHOLOGY, AUBURN, AL 36849 USA
SN 0099-5444
J9 NEMATROPICA
JI Nematropica
PD DEC
PY 2012
VL 42
IS 2
BP 281
EP 286
PG 6
WC Zoology
SC Zoology
GA 142OS
UT WOS:000318807500014
ER
PT J
AU Ibrahim, IKA
Awd-Allah, SFA
Handoo, ZA
AF Ibrahim, I. K. A.
Awd-Allah, S. F. A.
Handoo, Z. A.
TI HOST SUITABILITY OF SOME POACEOUS CROP CULTIVARS FOR HETERODERA GOLDENI
SO NEMATROPICA
LA English
DT Article
DE Corn; Egypt; Heterodera goldeni; host; maize; rice; sorghum
ID MELOIDOGYNE-PARTITYLA; PECAN; PHENOTYPES
AB The host suitability of four corn, four sorghum and five rice cultivars to the cyst nematode Heterodera goldeni was determined in the greenhouse. The results showed that H. goldeni infected and reproduced successfully on all the testedpoaceous crop cultivars. The corn hybrids Pioneer 3062 and SC 10 were susceptible and moderately susceptible to H. goldeni, respectively, while the corn hybrids SC 123 and TWC 324 were moderately resistant. The sorghum cultivars Balady, Dorado, Giza 15 and H 1020 were susceptible to H. goldeni. The rice cultivars Giza 171, Giza 177, Giza 178, Sakha 101 and Sakha 102 were susceptible or highly susceptible to H. goldeni.
C1 [Ibrahim, I. K. A.] Univ Alexandria, Fac Agr, Dept Plant Pathol, Alexandria, Egypt.
[Awd-Allah, S. F. A.] Minist Agr, Agr Res Ctr, Dept Nematol, Alexandria, Egypt.
[Handoo, Z. A.] ARS, USDA, Nematol Lab, Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
RP Handoo, ZA (reprint author), ARS, USDA, Nematol Lab, Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
EM Zafar.Handoo@ars.usda.gov
NR 21
TC 0
Z9 1
U1 0
U2 0
PU ORGANIZATION TROP AMER NEMATOLOGISTS
PI AUBURN
PA AUBURN UNIV DEPT PLANT PATHOLOGY, AUBURN, AL 36849 USA
SN 0099-5444
J9 NEMATROPICA
JI Nematropica
PD DEC
PY 2012
VL 42
IS 2
BP 324
EP 329
PG 6
WC Zoology
SC Zoology
GA 142OS
UT WOS:000318807500020
ER
PT J
AU Brown, G
Reed, P
AF Brown, Greg
Reed, Pat
TI Values Compatibility Analysis: Using Public Participation Geographic
Information Systems (PPGIS) for Decision Support in National Forest
Management
SO APPLIED SPATIAL ANALYSIS AND POLICY
LA English
DT Article
DE Public participation GIS; PPGIS; Forest management; Decision support
ID LANDSCAPE VALUES; SPATIAL ATTRIBUTES; ATTITUDES; GIS
AB Human values are embedded in forest management decisions but are rarely systematically and explicitly included in the decision process. National legislation for public lands often provides conflicting goals but little guidance for agencies such as the U. S. Forest Service to operationalize public value preferences. The historical difficulty of integrating public values into forest management decisions includes the problems of measurement, aggregation, and tradeoff analysis. In this paper, we present a method for measuring and integrating spatially-explicit public values collected using public participation geographic information systems (PPGIS) into a decision support framework we call values compatibility analysis (VCA). We provide a case study to demonstrate how spatially-explicit public values can be used to determine the compatibility of designating ATV/OHV routes on national forest land. The applications and limitations of VCA for decision support are elaborated and we conclude that an effective decision support framework should provide some degree of standardization, be broadly inclusive, and provide the opportunity to engage in systematic place-based value trade-off analyses.
C1 [Brown, Greg] Univ Queensland, Brisbane, Qld 4101, Australia.
[Reed, Pat] US Forest Serv, USDA, Anchorage, AK 99503 USA.
RP Brown, G (reprint author), Univ Queensland, Brisbane, Qld 4101, Australia.
EM greg.brown@uq.edu.au; preed01@fs.fed.us
NR 30
TC 23
Z9 25
U1 5
U2 22
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 1874-463X
J9 APPL SPAT ANAL POLIC
JI Appl. Spat. Anal. Policy
PD DEC
PY 2012
VL 5
IS 4
BP 317
EP 332
DI 10.1007/s12061-011-9072-x
PG 16
WC Geography
SC Geography
GA 144WQ
UT WOS:000318972900003
ER
PT J
AU Hansen, JA
Basham, JP
Oliver, JB
Youseef, NN
Klingeman, WE
Moulton, JK
Fare, DC
AF Hansen, Jason A.
Basham, Joshua P.
Oliver, Jason B.
Youseef, Nadeer N.
Klingeman, William E.
Moulton, John K.
Fare, Donna C.
TI NEW STATE AND HOST PLANT RECORDS FOR METALLIC WOODBORING BEETLES
(COLEOPTERA: BUPRESTIDAE) IN TENNESSEE, U.S.A.
SO COLEOPTERISTS BULLETIN
LA English
DT Article
DE jewel beetles; flatheaded borers; geographic distribution; ecology;
Nearctic
ID MANAGEMENT; US
AB The following 41 metallic woodboring beetle species (Coleoptera: Buprestidae) from Tennessee are reported as new state records: Acmaeodera texana LeConte, Actenodes simi Fisher, Agrilus acutipennis Mannerheim, Agrilus arcuatus Say, Agrilus bilineatus (Weber), Agrilus cephalicus LeConte, Agrilus defectus LeConte, Agrilus geminatus (Say), Agrilus lecontei celticola Fisher, Agrilus masculinus Horn, Agrilus obsoletoguttatus Gory, Agrilus otiosus Say, Agrilus parvus parvus Saunders, Agrilus pseudofallax Frost, Agrilus putillus putillus Say, Agrilus quadriguttatus quadriguttatus Gory, Agrilus subcinctus Gory, Anthaxia cyanella Gory, Anthaxia dichroa Bily, Anthaxia quercata (F.), Anthaxia quercicola Wellso, Brachys aerosus (Melsheimer), Brachys ovatus (Weber), Buprestis consularis Gory, Buprestis decora F., Buprestis fasciata F., Buprestis maculipennis Gory, Buprestis rufipes Olivier, Chalcophora virginiensis (Drury), Chrysobothris cribraria Mannerheim, Chrysobothris dentipes (Germar), Chrysobothris rotundicollis Gory and Laporte, Chrysobothris scabripennis Gory and Laporte, Chrysobothris sexsignata Say, Dicerca divaricata Say, Dicerca lepida LeConte, Eupristocerus cogitans (Weber), Phaenops aeneola (Melsheimer), Phaenops drummondi (Kirby), Phaenops obtusa (Horn), and Xenorhipis brendeli LeConte. New larval host plant records are reported for Actenodes acornis (Say), A. cephalicus, A. cyanella, A. quercicola, Chrysobothris azurea LeConte, Chrysobothris chlorocephala Gory, Chrysobothris femorata (Olivier), C. sexsignata, and X. brendeli, and biological notes for five species are presented.
C1 [Hansen, Jason A.; Moulton, John K.] Univ Tennessee, Dept Entomol & Plant Pathol, Knoxville, TN 37996 USA.
[Basham, Joshua P.; Oliver, Jason B.; Youseef, Nadeer N.] Tennessee State Univ, Coll Agr Human & Nat Sci, Otis L Floyd Nursery Res Ctr, Mcminnville, TN 37110 USA.
[Klingeman, William E.] Univ Tennessee, Dept Plant Sci, Knoxville, TN 37996 USA.
[Fare, Donna C.] USDA ARS, US Natl Arboretum, Otis L Floyd Nursery Res Ctr, Mcminnville, TN 37110 USA.
RP Hansen, JA (reprint author), Univ Tennessee, Dept Entomol & Plant Pathol, 2431 Joe Johnson Dr,205 Ellington Plant Sci Bldg, Knoxville, TN 37996 USA.
FU Discover Life in America Grant [DLIA2009-07]; US Department of
Agriculture [58-6404-7-2]
FX We thank Rick Westcott (Oregon Department of Agriculture, OR), Henry
Hespenheide (University of California-Los Angeles, CA), Stan Wellso
(Bastrop, TX), and Ted MacRae (Monsanto Company, MO) for their time
identifying many of the specimens reported in this manuscript. We thank
employees and interns at Great Smoky Mountains National Park for help in
checking traps and Adriean Mayor for his assistance with the park's
buprestid collection. We especially appreciate specimen loans from Rick
Westcott and Kyle Schnepp. This work was partially funded by Discover
Life in America Grant #DLIA2009-07 and US Department of Agriculture
Grant #58-6404-7-2.
NR 25
TC 5
Z9 5
U1 1
U2 16
PU COLEOPTERISTS SOC
PI ATHENS
PA UNIV GEORGIA, 413 BIOLOGICAL SCIENCES BUILDING, ATHENS, GA 30602-2603
USA
SN 0010-065X
J9 COLEOPTS BULL
JI Coleopt. Bull.
PD DEC
PY 2012
VL 66
IS 4
BP 337
EP 343
PG 7
WC Entomology
SC Entomology
GA 142UH
UT WOS:000318822600007
ER
PT J
AU Lovis, L
Guerrero, FD
Miller, RJ
Bodine, DM
Betschart, B
Sager, H
AF Lovis, Leonore
Guerrero, Felix D.
Miller, Robert J.
Bodine, Deanna M.
Betschart, Bruno
Sager, Heinz
TI Distribution patterns of three sodium channel mutations associated with
pyrethroid resistance in Rhipicephalus (Boophilus) microplus populations
from North and South America, South Africa and Australia
SO INTERNATIONAL JOURNAL FOR PARASITOLOGY-DRUGS AND DRUG RESISTANCE
LA English
DT Article
DE Rhipicephalus (Boophilus) microplus; Multiplex PCR; Synthetic pyrethroid
resistance; Mutation
ID CATTLE TICK; ACARICIDE RESISTANCE; KNOCKDOWN RESISTANCE; POINT
MUTATIONS; IDENTIFICATION; IXODIDAE; GENE; INSECTICIDES; STRAINS;
PERMETHRIN
AB Resistance to synthetic pyrethroids (SP) in the cattle tick Rhipicephalus (Boophilus) microplus is widespread throughout its distribution area. Three single nucleotide substitutions identified in Domains II and III of the sodium channel gene of R. (B.) microplus are known to be associated with target site pyrethroid resistance. We developed a multiplex PCR using allele-specific primers to amplify wild type or mutated genotypes of the three mutations simultaneously. This assay was used to screen tick samples originating from Brazil, Argentina, Mexico, South Africa and Australia whose phenotype to flumethrin and cypermethrin had been determined by the use of the Larval Tarsal test (LTT) or the Larval Packet Test (LPT). These mutations were found to have distinct geographical distributions and result in different resistance phenotypes. The L64I Domain II mutation conferring resistance to several SP compounds was found in all the Brazilian, Argentinean and Australian populations and in one South African population, with frequencies between 38% and 100% in flumethrin and cypermethrin resistant populations. In contrast, this mutation was not found in samples from Mexico, while the Domain III mutation was found exclusively in this country. The G72V Domain II flumethrin-specific mutation was found in a single Australian population, with a very low resistant allele frequency (3%). The homozygous resistant RR genotype of the L64I Domain II mutation correlated significantly with the survival rates at the discriminating doses of flumethrin and cypermethrin. This survey shows the widespread distribution of the L64I Domain II mutation and provides evidence of its geographic separation from the Domain III mutation. (C) 2012 Australian Society for Parasitology Published by Elsevier Ltd. All rights reserved.
C1 [Lovis, Leonore; Betschart, Bruno] Univ Neuchatel, Inst Biol, Parasitol Lab, CH-2000 Neuchatel, Switzerland.
[Lovis, Leonore; Sager, Heinz] Novartis Anim Hlth Res Ctr, CH-1566 St Aubin, FR, Switzerland.
[Guerrero, Felix D.; Bodine, Deanna M.] USDA ARS, Knipling Bushland US Livestock Insects Res Lab, Kerrville, TX 78028 USA.
[Miller, Robert J.] USDA ARS, Cattle Fever Tick Res Lab, Edinburg, TX 78541 USA.
RP Lovis, L (reprint author), Novartis Anim Hlth Res Ctr, Chemin Petite Glane, CH-1566 St Aubin, FR, Switzerland.
EM leonore.lovis@unine.ch
NR 39
TC 9
Z9 9
U1 0
U2 7
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 2211-3207
J9 INT J PARASITOL-DRUG
JI Int. J. Parasitol.-Drugs Drug Resist.
PD DEC
PY 2012
VL 2
BP 216
EP 224
DI 10.1016/j.ijpddr.2012.08.001
PG 9
WC Parasitology; Pharmacology & Pharmacy
SC Parasitology; Pharmacology & Pharmacy
GA 123QH
UT WOS:000317404800025
PM 24533283
ER
PT J
AU Sheffield, CL
Crippen, TL
Poole, TL
Beier, RC
AF Sheffield, Cynthia L.
Crippen, Tawni L.
Poole, Toni L.
Beier, Ross C.
TI Destruction of single-species biofilms of Escherichia coli or Klebsiella
pneumoniae subsp pneumoniae by dextranase, lactoferrin, and lysozyme
SO INTERNATIONAL MICROBIOLOGY
LA English
DT Article
DE Escherichia coli; Klebsiella pneumoniae subsp pneumoniae; dextranase;
lactoferrin; lysozyme; biofilms; food safety
ID ENZYMES; GLUCANS; SYSTEM
AB The aim of this work was to determine the destructive activity of dextranase, lactoferrin, and lysozyme, against single species biofilms composed of either Klebsiella pneumoniae subsp. pneumoniae or Escherichia colt using the MBEC Assay. Luminescence measurements based on quantitation of the ATP present were used to determine the amount of biofilm elimination and correlated with quantity of live bacteria present in the sample. The data were analyzed employing a two-way ANOVA and Bonferroni post-test. Treatments resulted in percentage reductions of E. coli biofilms ranging from 73 to 98 %. Lactoferrin (40 mu g/ml) produced a significantly higher-percentage reduction than lysozyme (10 mu g/ml) (P < 0.05), no other significant differences occurred. Similar treatments resulted in percentage reductions of K. pneumoniae subsp. pneumoniae biofilms ranging from 51 to 100 %. Dextranase treatments produced a significantly lower percentage reduction than all other materials (P < 0.05), no other significant differences occurred. No material was capable of complete destruction of both single species biofilms; however, low concentrations of lactoferrin and lysozyme each removed 100 % of the K pneumoniae subsp. pneumoniae biofilm. Low concentrations of lactoferrin or lysozyme might be beneficial to prevent biofilm formation by K pneumoniae subsp. pneumoniae. [Int Microbiol 2012; 15(4): 185-189]
C1 [Sheffield, Cynthia L.; Crippen, Tawni L.; Poole, Toni L.; Beier, Ross C.] ARS, Food & Feed Safety Unit, Southern Plains Agr Res Ctr, USDA, College Stn, TX USA.
RP Sheffield, CL (reprint author), ARS, USDA, SPARC, 2881 F&B Rd, College Stn, TX 77845 USA.
EM cindy.sheffield@ars.usda.gov
NR 21
TC 2
Z9 2
U1 2
U2 17
PU VIGUERA EDITORES, S L
PI BARCELONA
PA PLAZA TETUAN, 7, BARCELONA, E-08010, SPAIN
SN 1139-6709
J9 INT MICROBIOL
JI Int. Microbiol.
PD DEC
PY 2012
VL 15
IS 4
BP 184
EP 188
DI 10.2436/20.1501.01.172
PG 5
WC Biotechnology & Applied Microbiology; Microbiology
SC Biotechnology & Applied Microbiology; Microbiology
GA 105BS
UT WOS:000316041200004
ER
PT J
AU Wohl, E
Dwire, K
Sutfin, N
Polvi, L
Bazan, R
AF Wohl, Ellen
Dwire, Kathleen
Sutfin, Nicholas
Polvi, Lina
Bazan, Roberto
TI Mechanisms of carbon storage in mountainous headwater rivers
SO NATURE COMMUNICATIONS
LA English
DT Article
ID COLORADO FRONT RANGE; ORGANIC-CARBON; HUMAN IMPACTS; STREAMS; BEAVER;
FLUXES; FOREST; WOOD; OCEAN; PARTICULATE
AB Published research emphasizes rapid downstream export of terrestrial carbon from mountainous headwater rivers, but little work focuses on mechanisms that create carbon storage along these rivers, or on the volume of carbon storage. Here we estimate organic carbon stored in diverse valley types of headwater rivers in Rocky Mountain National Park, CO, USA. We show that low-gradient, broad valley bottoms with old-growth forest or active beaver colonies store the great majority of above- and below-ground carbon. These laterally unconfined valley segments constitute <25% of total river length, but store similar to 75% of the carbon. Floodplain sediment and coarse wood dominate carbon storage. Our estimates of riverine carbon storage represent a previously undocumented but important carbon sink. Our results indicate that: not all mountainous rivers rapidly export carbon; not all valley segments are equally important in carbon storage; and historical changes in riverine complexity have likely reduced carbon storage.
C1 [Wohl, Ellen; Sutfin, Nicholas; Polvi, Lina] Colorado State Univ, Dept Geosci, Ft Collins, CO 80523 USA.
[Dwire, Kathleen; Bazan, Roberto] US Forest Serv, USDA, Rocky Mt Res Stn, Ft Collins, CO 80526 USA.
RP Wohl, E (reprint author), Colorado State Univ, Dept Geosci, Ft Collins, CO 80523 USA.
EM ellenw@cnr.colostate.edu
RI Sutfin, Nicholas A/Q-7824-2016
OI Sutfin, Nicholas A/0000-0003-4429-7814
NR 47
TC 33
Z9 33
U1 6
U2 59
PU NATURE PUBLISHING GROUP
PI LONDON
PA MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
SN 2041-1723
J9 NAT COMMUN
JI Nat. Commun.
PD DEC
PY 2012
VL 3
AR 1263
DI 10.1038/ncomms2274
PG 8
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 109HH
UT WOS:000316356700031
PM 23232393
ER
PT J
AU Kousik, CS
Ikerd, JL
Wechter, P
Harrison, H
Levi, A
AF Kousik, Chandrasekar S.
Ikerd, Jennifer L.
Wechter, Patrick
Harrison, Howard
Levi, Amnon
TI Resistance to Phytophthora Fruit Rot of Watermelon Caused by
Phytophthora capsici in US Plant Introductions
SO HORTSCIENCE
LA English
DT Article
DE Citrullus lanatus; fruit rot; oomycete; Phytophthora capsici
ID CROWN ROT; ROOT-ROT; VEGETABLE CROPS; FOLIAR BLIGHT; UNITED-STATES;
PEPPER; SUSCEPTIBILITY; INHERITANCE; ACCESSIONS; INFECTION
AB Phytophthora fruit rot, caused by Phytophthora capsici, is prevalent in most watermelon-producing regions of southeastern United States and is known to cause pre- and post-harvest yield losses. A non-wound inoculation technique was developed to evaluate detached mature fruit belonging to U.S. watermelon Pls for resistance to fruit rot caused by P. capsici. Mature fruit were harvested and placed on wire shelves in a walk-in humid chamber [greater than 95% relative humidity (RH), temperature 26 +/- 2 degrees C] and inoculated with a 7-mm agar plug from an actively growing colony of P. capsici. Twenty-four Pls that exhibited resistance in a preliminary evaluation of 205 Pls belonging to the watermelon core collection in 2009 were grown in the field and greenhouse in 2010 and 2011 and evaluated in the walk-in humid chamber. Fruit rot development was rapid on fruit of susceptible controls 'Black Diamond', 'Sugar Baby', and PI 536464. Several accessions including PI 560020, PI 306782, PI 186489, and PI 595203 (all Citrullus lanatus var. lanatus) were highly resistant to fruit rot. One C. colocynthis (PI 388770) and a C. lanatus var. citroides PI (PI 189225) also showed fruit rot resistance. Fruit from Pis that were resistant also had significantly lower amounts of P. capsici DNA/gram of fruit tissue compared with the susceptible commercial cultivars Sugar Baby and Black Diamond. The sources of resistance to Phytophthora fruit rot identified in this study may prove useful in watermelon breeding programs aimed at enhancing disease resistance.
C1 [Kousik, Chandrasekar S.; Ikerd, Jennifer L.; Wechter, Patrick; Harrison, Howard; Levi, Amnon] ARS, US Vegetable Lab, USDA, Charleston, SC 29414 USA.
RP Kousik, CS (reprint author), ARS, US Vegetable Lab, USDA, 2700 Savannah Highway, Charleston, SC 29414 USA.
EM shaker.kousik@ars.usda.gov
FU Cucurbit Corp Germplasm Committee (CGC) of the USDA
FX This research was supported in part by funding from the Cucurbit Corp
Germplasm Committee (CGC) of the USDA.
NR 51
TC 5
Z9 5
U1 1
U2 15
PU AMER SOC HORTICULTURAL SCIENCE
PI ALEXANDRIA
PA 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA
SN 0018-5345
J9 HORTSCIENCE
JI Hortscience
PD DEC
PY 2012
VL 47
IS 12
BP 1682
EP 1689
PG 8
WC Horticulture
SC Agriculture
GA 100NR
UT WOS:000315708400003
ER
PT J
AU Zheljazkov, VD
Cantrell, CL
Donega, MA
Astatkie, T
Heidel, B
AF Zheljazkov, Valtcho D.
Cantrell, Charles L.
Donega, Mateus Augusto
Astatkie, Tess
Heidel, Bonnie
TI Podophyllotoxin Concentration in Junipers in the Big Horn Mountains in
Wyoming
SO HORTSCIENCE
LA English
DT Article
DE Juniperus horizontalis; Juniperus scopulorum; anticancer
ID EASTERN RED CEDAR; AMERICAN MAYAPPLE; PELTATUM; LEAVES
AB Podophyllotoxin is used for the production of the anticancer drugs etoposide, etopophos, and teniposide. Currently, podophyllotoxin is extracted from the Himalayan mayapple (Podophyllum hexandrum Royle). Some junipers and other species also contain the same natural product and have been explored as a domestic source for this compound. The objective of this study was to screen junipers in the Big Horn Mountains in Wyoming for podophyllotoxin. Twenty junipers (18 accessions of Juniperus horizontalis Moench. and two accessions off. scopulorum Sarg.) were sampled in Mar. 2012 and analyzed for podophyllotoxin. Podophyllotoxin concentration in the samples varied from 0.058% to 0.673% with five accessions having podophylloxin concentration above 0.5%. This study demonstrated wide variation of podophyllotoxin in J. horizontalis and J. scopulorum in the Big Horn Mountains. Some of the accessions had greater than 0.5% podophyllotoxin making them a feasible source for podophyllotoxin extraction.
C1 [Zheljazkov, Valtcho D.] Univ Wyoming, Sheridan Res & Extens Ctr, Sheridan, WY 82801 USA.
[Cantrell, Charles L.] ARS, USDA, NPURU, University, MS 38677 USA.
[Donega, Mateus Augusto] Univ Sao Paulo, Escola Super Agr Luiz de Queiroz, BR-13418900 Piracicaba, Brazil.
[Astatkie, Tess] Dalhousie Univ, Fac Agr, Truro, NS B2N 5E3, Canada.
[Heidel, Bonnie] Univ Wyoming, WY Nat Divers Database, Laramie, WY 82071 USA.
RP Zheljazkov, VD (reprint author), Univ Wyoming, Sheridan Res & Extens Ctr, 663 Wyarno Rd, Sheridan, WY 82801 USA.
EM vjeliazk@uwyo.edu
RI Astatkie, Tess/J-7231-2012
OI Astatkie, Tess/0000-0002-9779-8789
FU University of Wyoming
FX This research was funded in part by the University of Wyoming startup
funding awarded to Dr. Zheljazkov.
NR 21
TC 1
Z9 1
U1 1
U2 6
PU AMER SOC HORTICULTURAL SCIENCE
PI ALEXANDRIA
PA 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA
SN 0018-5345
J9 HORTSCIENCE
JI Hortscience
PD DEC
PY 2012
VL 47
IS 12
BP 1696
EP 1697
PG 2
WC Horticulture
SC Agriculture
GA 100NR
UT WOS:000315708400005
ER
PT J
AU Kousik, CS
Adkins, S
Turechek, WW
Webster, CG
Roberts, PD
AF Kousik, Chandrasekar S.
Adkins, Scott
Turechek, William W.
Webster, Craig G.
Roberts, Pamela D.
TI 392291-VDR, a Watermelon Germplasm Line with Resistance to Squash vein
yellowing virus-caused Watermelon Vine Decline
SO HORTSCIENCE
LA English
DT Editorial Material
DE Bemisia tabaci; cucurbit; Ipomovirus; host plant resistance
ID FLORIDA; CUCURBITS
C1 [Kousik, Chandrasekar S.] USDA ARS, US Vegetable Lab, Charleston, SC 29414 USA.
[Adkins, Scott; Turechek, William W.; Webster, Craig G.] USDA ARS, US Hort Res Lab, Ft Pierce, FL 34945 USA.
[Roberts, Pamela D.] Univ Florida, Southwest Florida Res & Educ Ctr, Immokalee, FL 34142 USA.
RP Kousik, CS (reprint author), USDA ARS, US Vegetable Lab, 2700 Savannah Highway, Charleston, SC 29414 USA.
EM shaker.kousik@ars.usda.gov
NR 17
TC 1
Z9 1
U1 0
U2 5
PU AMER SOC HORTICULTURAL SCIENCE
PI ALEXANDRIA
PA 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA
SN 0018-5345
J9 HORTSCIENCE
JI Hortscience
PD DEC
PY 2012
VL 47
IS 12
BP 1805
EP 1807
PG 3
WC Horticulture
SC Agriculture
GA 100NR
UT WOS:000315708400025
ER
PT J
AU Pounders, CT
Sakhanokho, H
AF Pounders, Cecil T.
Sakhanokho, Hamidou
TI 'USS Arizona' and 'USS California' Tropical Hibiscus (Hibiscus
rosa-sinensis L.)
SO HORTSCIENCE
LA English
DT Editorial Material
DE chinese hibiscus; Malvaceae; patio plant; ornamental breeding
C1 [Pounders, Cecil T.; Sakhanokho, Hamidou] USDA ARS, Thad Cochran Southern Hort Lab, Poplarville, MS USA.
RP Pounders, CT (reprint author), USDA ARS, Thad Cochran Southern Hort Lab, POB 287,810 Highway 26 W, Poplarville, MS USA.
EM Cecil.Pounders@ars.usda.gov
NR 10
TC 0
Z9 0
U1 0
U2 3
PU AMER SOC HORTICULTURAL SCIENCE
PI ALEXANDRIA
PA 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA
SN 0018-5345
J9 HORTSCIENCE
JI Hortscience
PD DEC
PY 2012
VL 47
IS 12
BP 1819
EP 1820
PG 2
WC Horticulture
SC Agriculture
GA 100NR
UT WOS:000315708400029
ER
PT J
AU Ehlenfeldt, MK
Kramer, M
AF Ehlenfeldt, Mark K.
Kramer, Matthew
TI Self-fertility Evaluations of Northern-adapted Rabbiteye Blueberry
Hybrids
SO HORTSCIENCE
LA English
DT Article
DE highbush; V. constablaei; V. corymbosum; V. virgatum; V. ashei
ID COLD-HARDINESS; CULTIVARS
AB Rabbiteye blueberry hybrids that the U.S. Department of Agriculture, Agricultural Research Service (USDA-ARS) program has bred for northern adaptation are combinations of 6x V. ashei Reade, 6x V. constablaei Gray, 4x V. corymbosum L., and 2x V. darrowii Camp germplasm at the hexaploid level and are generally composed of 50% or greater V. ashei (rabbiteye) germplasm. Four northern-adapted rabbiteye (NRE) selections (US 1043, US 1045, US 1056, US 1057), four rabbiteye standards ('Brightwell', 'Climax', 'Tifblue', 'Woodard'), two rabbiteye x V. constablaei derivatives ('Little Giant', 'Snowflake), and two highbush standards ('Duke', 'Bluecrop') were pollinated under greenhouse conditions with either self-pollen or a multicultivar, bulk-pollen mixture (appropriate to ploidy level and species) to determine the relative requirements for cross-pollination among NRE selections. Fruit set, berry weight, and seed set were subsequently evaluated. The results suggest that NRE selections, in general, exhibit cross-pollination needs intermediate to the parent types such that: rabbiteye > northern rabbiteye > highbush (i.e., rabbiteye has the lowest self-fertility and the greatest need for cross-pollination). Considerable variation existed among the NRE selections tested, which suggests that it might be possible to select clones with good levels of self-fertility, potentially equivalent to that of highbush blueberry.
C1 [Ehlenfeldt, Mark K.] ARS, USDA, PE Marucci Ctr Blueberry & Cranberry Res & Extens, Chatsworth, NJ 08019 USA.
[Kramer, Matthew] USDA ARS, Biometr Consulting Serv, Henry A Wallace Agr Res Ctr, Beltsville, MD 20705 USA.
RP Ehlenfeldt, MK (reprint author), ARS, USDA, PE Marucci Ctr Blueberry & Cranberry Res & Extens, 125A Lake Oswego Rd, Chatsworth, NJ 08019 USA.
EM mark.ehlenfeldt@ars.usda.gov
NR 15
TC 1
Z9 1
U1 2
U2 18
PU AMER SOC HORTICULTURAL SCIENCE
PI ALEXANDRIA
PA 113 S WEST ST, STE 200, ALEXANDRIA, VA 22314-2851 USA
SN 0018-5345
J9 HORTSCIENCE
JI Hortscience
PD DEC
PY 2012
VL 47
IS 12
BP 1837
EP 1842
PG 6
WC Horticulture
SC Agriculture
GA 100NR
UT WOS:000315708400033
ER
PT J
AU Paveglio, TB
Carroll, MS
Jakes, PJ
Prato, T
AF Paveglio, Travis B.
Carroll, Matthew S.
Jakes, Pamela J.
Prato, Tony
TI Exploring the Social Characteristics of Adaptive Capacity for Wildfire:
Insights from Flathead County, Montana
SO HUMAN ECOLOGY REVIEW
LA English
DT Article
DE adaptive capacity; wildland fire; hazards
ID WILDLAND-URBAN INTERFACE; COMMUNITY RESILIENCE; FIRE; MITIGATION; US;
PERCEPTIONS; HOMEOWNERS; MANAGEMENT; RISK; VULNERABILITY
AB The increasing threat caused by wildfire in the United States has spurred the development of a number of policies and programs that encourage communities to reduce their risk by becoming "fire adapted." Yet despite these goals, there is little understanding of the characteristics that are crucial in the development of fire adapted communities. This research seeks to uncover specific aspects of local social context that lead to adaptive capacity for wildfire among communities in Flathead County, MT by consulting local fire professionals, community representatives and emergency managers using focus groups and interviews. Results suggest that adaptive capacity is highly variable across the county and influenced by aspects such as community identity, strong communication networks and the local wood products industry. We contend that a better understanding of adaptive capacity to wildfire requires systematic documentation of how specific characteristics of local people interact to influence their ability to deal with change.
C1 [Paveglio, Travis B.] Univ Montana, Coll Forestry & Conservat, Missoula, MT 59812 USA.
[Carroll, Matthew S.] Washington State Univ, Dept Nat Resource Sci, Pullman, WA 99164 USA.
[Jakes, Pamela J.] US Forest Serv, USDA, No Res Stn, Washington, DC USA.
[Prato, Tony] Univ Missouri, Columbia, MO 65211 USA.
RP Paveglio, TB (reprint author), Univ Montana, Coll Forestry & Conservat, Missoula, MT 59812 USA.
EM travis.paveglio@cfc.umt.edu
NR 77
TC 10
Z9 10
U1 2
U2 28
PU SOC HUMAN ECOLOGY
PI BAR HARBOR
PA 105 EDEN ST, BAR HARBOR, ME 04609 USA
SN 1074-4827
J9 HUM ECOL REV
JI Hum. Ecol. Rev.
PD WIN
PY 2012
VL 19
IS 2
BP 110
EP 124
PG 15
WC Environmental Studies; Sociology
SC Environmental Sciences & Ecology; Sociology
GA 098IC
UT WOS:000315541700003
ER
PT J
AU Burn, SM
Winter, PL
Hori, B
Silver, NC
AF Burn, Shawn Meghan
Winter, Patricia L.
Hori, Brittany
Silver, N. Clayton
TI Gender, Ethnic Identity, and Environmental Concern in Asian Americans
and European Americans
SO HUMAN ECOLOGY REVIEW
LA English
DT Article
DE Environmental Concern; Gender; Ethnic Identity; Environmental Values
ID PSYCHOLOGICAL-RESEARCH; ECOLOGICAL PARADIGM; PROENVIRONMENTAL BEHAVIOR;
CONSERVATION BEHAVIOR; UNITED-STATES; VALUES; ATTITUDES; SCALE; BELIEF;
QUESTIONNAIRES
AB There are relatively few articles in sociology and psychology on gender ethnicity, and the environment, yet ethnic and gender neutral approaches to sustainability may be incomplete. We studied gender, ethnicity, and environmental concern with an internet sample of Asian American women (n=157) and men (n=69), and European American women (n=222) and men (n=99). Participants completed the New Ecological Paradigm measure (NEP; Dunlap et al., 2000), the value bases of environmental concern (Schultz, 2000), and the Multigroup Ethnic Identity Measure-Revised (MEIM-R; Phinney & Ong, 2007). A 2 (ethnicity) x 2 (gender) ANOVA found no gender or ethnic differences on the NEP. A 2 (ethnicity) x 2 (gender) MANOVA with the three value bases as dependent variables found significant effects for ethnicity and gender Ethnic identification enhanced cultural influences on environmental concern. Findings are discussed in terms of the marketing of environmental sustainability to address climate change and other environmental risks.
C1 [Burn, Shawn Meghan; Hori, Brittany] Calif Polytech State Univ, Dept Psychol & Child Dev, San Obispo, CA 93405 USA.
[Winter, Patricia L.] USFS, Pacific Southwest Res Stn, Washington, DC USA.
[Silver, N. Clayton] Univ Nevada, Dept Psychol, Las Vegas, NV 89154 USA.
RP Burn, SM (reprint author), Calif Polytech State Univ, Dept Psychol & Child Dev, San Obispo, CA 93405 USA.
EM sburn@calpoly.edu
NR 57
TC 3
Z9 3
U1 8
U2 29
PU SOC HUMAN ECOLOGY
PI BAR HARBOR
PA 105 EDEN ST, BAR HARBOR, ME 04609 USA
SN 1074-4827
J9 HUM ECOL REV
JI Hum. Ecol. Rev.
PD WIN
PY 2012
VL 19
IS 2
BP 136
EP 145
PG 10
WC Environmental Studies; Sociology
SC Environmental Sciences & Ecology; Sociology
GA 098IC
UT WOS:000315541700005
ER
PT J
AU Camann, MA
Lamoncha, KL
Gillette, NE
AF Camann, Michael A.
Lamoncha, Karen L.
Gillette, Nancy E.
TI Oribatid Mite Community Decline Two Years after Low-Intensity Burning in
the Southern Cascade Range of California, USA
SO FORESTS
LA English
DT Article
DE soil microarthropods; prescribed fire; Acari; Oribatida; oribatid mites;
forest management; ponderosa pine; biodiversity
ID MIXED-CONIFER FOREST; COARSE WOODY DEBRIS; SOIL MICROARTHROPODS;
PRESCRIBED FIRE; SIERRA-NEVADA; ABUNDANCE; RESPONSES; CRYPTOSTIGMATA;
DECOMPOSITION; DIVERSITY
AB To assess effects of low-intensity fire, we combined two silvicultural prescriptions with prescribed fire in the California Cascade Range. In the first treatment, two 100-ha stands were thinned to reduce density while retaining old-growth structural characteristics, yielding residual stands with high structural diversity (HSD). Two other 100-ha plots were thinned to minimize old growth structure, producing even-aged stands of low structural diversity (LSD), and one 50-ha split-plot from each treatment was burned. In addition, two 50 ha old-growth Research Natural Areas (RNA) were selected as untreated reference plots, one of which was also burned. Fire treatments profoundly altered mite assemblages in the short term, and forest structure modification likely exacerbated that response. Sampling conducted two years following treatment confirmed a continuing decline in oribatid mite abundance. Oribatid species richness and assemblage heterogeneity also declined, and community dominance patterns were disrupted. Oribatid responses to fire were either more intense or began earlier in the LSD treatments, suggesting that removal of old-growth structure exacerbated mite responses to fire. Prostigmatids recovered quickly, but their populations nonetheless diminished significantly in burned split-plots. Mite assemblage responses to prescribed fire were continuing nearly two years later, with no clear evidence of recovery.
C1 [Camann, Michael A.] Humboldt State Univ, Dept Biol Sci, Arcata, CA 95521 USA.
[Lamoncha, Karen L.] Univ Vermont, Dept Plant & Soil Sci, Burlington, VT 05405 USA.
[Gillette, Nancy E.] US Forest Serv, USDA, Pacific Southwest Res Stn, Berkeley, CA 94701 USA.
RP Gillette, NE (reprint author), US Forest Serv, USDA, Pacific Southwest Res Stn, POB 245, Berkeley, CA 94701 USA.
EM mac24@humboldt.edu; klamonch@uvm.edu; ngillette@fs.fed.us
FU United States Department of Interior, Bureau of Land Management; USDA
Forest Service Region 5; USDA Forest Service Region 6
FX We thank R. A. Norton (Syracuse University of New York, NY, USA), who
assisted with taxonomic determinations; S. R. Mori (USDA Forest Service,
Berkley, CA, USA) who provided statistical guidance and review; C. R.
Carvalho and D. R. Welty (USDA Forest Service, Placerville, CA, USA) who
extracted, curated, and sorted hundreds of thousands of microarthropods
from litter samples; W. W. Oliver and G.O. Fiddler, who designed and
supervised silvicultural treatments; and P. Weatherspoon, who supervised
prescribed fire treatments. A. Moldenke (Oregon State University,
Corvallis, OR, USA), Christopher J. Fettig (USDA Forest Service, PSW
Research Station, Davis, CA, USA), and D. Coleman and D. Crossley
(University of Georgia, Athen, GA, USA) provided helpful statistical and
technical reviews of an earlier draft. The authors especially
acknowledge the invaluable assistance of Sylvia R. Mori, USDA Forest
Service, PSW Research Station, who participated in the research design
and provided the GLMs We gratefully acknowledge funding from the United
States Department of Interior, Bureau of Land Management, and USDA
Forest Service Regions 5 and 6 in support of the Northwest Forest Plan.
NR 60
TC 0
Z9 0
U1 1
U2 14
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1999-4907
J9 FORESTS
JI Forests
PD DEC
PY 2012
VL 3
IS 4
BP 959
EP 985
DI 10.3390/f3040959
PG 27
WC Forestry
SC Forestry
GA 096PG
UT WOS:000315416100008
ER
PT J
AU Coots, C
Lambdin, P
Grant, J
Rhea, R
AF Coots, Carla
Lambdin, Paris
Grant, Jerome
Rhea, Rusty
TI Diversity, Vertical Stratification and Co-Occurrence Patterns of the
Mycetophilid Community among Eastern Hemlock, Tsuga canadensis (L.)
Carriere, in the Southern Appalachians
SO FORESTS
LA English
DT Article
DE Mycetophilidae; eastern hemlock; canopy arthropods; co-occurrence;
vertical distribution
ID NULL MODEL ANALYSIS; SPECIES COOCCURRENCE
AB Over 400 species of insects have been found in association with eastern hemlock in the southern Appalachians. Eastern hemlock stands provide an ideal habitat for all life stages of mycetophilids. However, the diversity, distribution and co-occurrence patterns of these species throughout the tree canopy are unknown. This study was initiated to evaluate abundance, species richness and species composition within three designated strata in the canopy of eastern hemlock, assess species for vertical stratification patterns, and determine if co-occurrence patterns of mycetophilid species are random or non-random. During this study, 24 species representing 14 genera were identified and evaluated. Mycetophilid abundance, species richness and composition differed among the lower, middle, and upper strata. Unique assemblages were identified in each stratum, indicating vertical stratification. The upper stratum of the canopy had four exclusive species, the middle had six exclusive species, and the lower stratum had nine exclusive species. The co-occurrence pattern of mycetophilid species in the canopy of eastern hemlock was non-random.
C1 [Coots, Carla; Lambdin, Paris; Grant, Jerome] Univ Tennessee, Dept Entomol & Plant Pathol, Knoxville, TN 37996 USA.
[Rhea, Rusty] US Forest Serv, USDA, Asheville, NC 28804 USA.
RP Coots, C (reprint author), Univ Tennessee, Dept Entomol & Plant Pathol, Knoxville, TN 37996 USA.
EM cdillin1@utk.edu; plambdin@utk.edu; jgrant@utk.edu; rrhea@fs.fed.us
FU USDA Forest Service, Forest Health Protection
FX We thank D. Paulsen, A. Hakeem, N. Reynolds, T. Conatser, and G. Wiggins
(Department of Entomology and Plant Pathology, University of Tennessee,
Knoxville, TN, USA) for assistance with field experiments, personnel at
the Tellico Plains Ranger Station (Cherokee National Forest, Monroe
County, TN, USA, for their assistance in setting up the test sites, and
the USDA Forest Service, Forest Health Protection for financial support
of this project.
NR 37
TC 5
Z9 5
U1 1
U2 16
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1999-4907
J9 FORESTS
JI Forests
PD DEC
PY 2012
VL 3
IS 4
BP 986
EP 996
DI 10.3390/f3040986
PG 11
WC Forestry
SC Forestry
GA 096PG
UT WOS:000315416100009
ER
PT J
AU Clark, S
McNab, H
Loftis, D
Zarnoch, S
AF Clark, Stacy
McNab, Henry
Loftis, David
Zarnoch, Stanley
TI American Chestnut Growth and Survival Five Years after Planting in Two
Silvicultural Treatments in the Southern Appalachians, USA
SO FORESTS
LA English
DT Article
DE American chestnut; artificial regeneration; forest management;
midstory-removal; restoration; shelterwood harvesting
ID CASTANEA-DENTATA SEEDLINGS; RED OAK; BLIGHT; PERFORMANCE; RESTORATION;
REGENERATION; MOUNTAINS; ECOLOGY; SITES; FORM
AB The ability to restore American chestnut (Castanea dentata) through the planting of blight-resistant (Cryphonectria parasitica) trees is currently being tested. Forest-based research on the species' silvicultural requirements and chestnut blight development are lacking. Pure American chestnut seedlings were planted in a two-age shelterwood forest with low residual basal area and in a midstory-removal treatment with high residual basal area. Survival did not differ between silvicultural treatments and averaged 67 percent across both treatments by the fifth year. Trees in the two-age shelterwood were 2.36 m and 16.8 mm larger in height and ground-line diameter, respectively, compared to trees in the midstory-removal by the fifth growing season. Blight occurrence was not affected by silvicultural treatment. Exploratory analyses indicated that seedling grading at planting and keeping trees free-to-grow through competition control would have resulted in a two-year gain in height and GLD growth in the two-age shelterwood treatment. The two-age shelterwood represented the most efficacious prescription for chestnut restoration, but the midstory-removal prescription may offer a reasonable alternative in areas where harvesting must be delayed.
C1 [Clark, Stacy] ARS, Southern Res Stn, USDA, Knoxville, TN 37996 USA.
[McNab, Henry; Loftis, David] ARS, Southern Res Stn, USDA, Asheville, NC 28806 USA.
[Zarnoch, Stanley] ARS, Southern Res Stn, USDA, Asheville, NC 28804 USA.
RP Clark, S (reprint author), ARS, Southern Res Stn, USDA, 2431 Joe Johnson Dr,Room 274, Knoxville, TN 37996 USA.
EM stacyclark@fs.fed.us; hmcnab@fs.fed.us; davidloftis@bellsouth.net;
szarnoch@fs.fed.us
NR 52
TC 10
Z9 10
U1 4
U2 21
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1999-4907
J9 FORESTS
JI Forests
PD DEC
PY 2012
VL 3
IS 4
BP 1017
EP 1033
DI 10.3390/f3041017
PG 17
WC Forestry
SC Forestry
GA 096PG
UT WOS:000315416100011
ER
PT J
AU Miesel, JR
Goebel, PC
Corace, RG
Hix, DM
Kolka, R
Palik, B
Mladenoff, D
AF Miesel, Jessica R.
Goebel, P. Charles
Corace, R. Gregory, III
Hix, David M.
Kolka, Randall
Palik, Brian
Mladenoff, David
TI Fire Effects on Soils in Lake States Forests: A Compilation of Published
Research to Facilitate Long-Term Investigations
SO FORESTS
LA English
DT Review
DE Lake States; fire effects; soil; forest; Michigan; Minnesota; Wisconsin;
New York; Ontario; Manitoba
ID JACK PINE FORESTS; NATIONAL WILDLIFE REFUGE; SOUTHERN BOREAL FORESTS;
OAK SAVANNA; CLEAR-CUT; NORTHEASTERN MINNESOTA; SURROGATE TREATMENTS;
EUROPEAN SETTLEMENT; CARBON STORAGE; UPPER MICHIGAN
AB Fire-adapted forests of the Lake States region are poorly studied relative to those of the western and southeastern United States and our knowledge base of regional short-and long-term fire effects on soils is limited. We compiled and assessed the body of literature addressing fire effects on soils in Lake States forests to facilitate the re-measurement of previous studies for the development of new long-term datasets, and to identify existing gaps in the regional knowledge of fire effects on forest soils. Most studies reviewed addressed fire effects on chemical properties in pine-dominated forests, and long-term (>10 years) studies were limited. The major gaps in knowledge we identified include: (1) information on fire temperature and behavior information that would enhance interpretation of fire effects; (2) underrepresentation of the variety of forest types in the Lake States region; (3) information on nutrient fluxes and ecosystem processes; and (4) fire effects on soil organisms. Resolving these knowledge gaps via future research will provide for a more comprehensive understanding of fire effects in Lake States forest soils. Advancing the understanding of fire effects on soil processes and patterns in Lake States forests is critical for designing regionally appropriate long-term forest planning and management activities.
C1 [Miesel, Jessica R.; Goebel, P. Charles; Corace, R. Gregory, III; Hix, David M.; Kolka, Randall; Palik, Brian] Ohio State Univ, Lake States Fire Sci Consortium, Ohio Agr & Res Dev Ctr, Sch Environm & Nat Resources, Wooster, OH 44691 USA.
[Miesel, Jessica R.; Goebel, P. Charles] Ohio State Univ, Ohio Agr & Res Dev Ctr, Sch Environm & Nat Resources, Wooster, OH 44691 USA.
[Corace, R. Gregory, III] US Fish & Wildlife Serv, Seney Natl Wildlife Refuge, Seney, MI 49883 USA.
[Hix, David M.] Ohio State Univ, Sch Environm & Nat Resources, Columbus, OH 43210 USA.
[Kolka, Randall; Palik, Brian] US Forest Serv, USDA, No Res Stn, Ctr Res Ecosyst Change, Grand Rapids, MN 55744 USA.
[Mladenoff, David] Univ Wisconsin, Dept Forest & Wildlife Ecol, Madison, WI 53706 USA.
RP Miesel, JR (reprint author), Ohio State Univ, Lake States Fire Sci Consortium, Ohio Agr & Res Dev Ctr, Sch Environm & Nat Resources, 1680 Madison Ave, Wooster, OH 44691 USA.
EM miesel.1@osu.edu; goebel.11@osu.edu; greg_corace@fws.gov; hix.6@osu.edu;
rkolka@fs.fed.us; bpalik@fs.fed.us; djmladen@wisc.edu
FU Joint Fire Science Program
FX Funding for this work was made possible through a grant from the Joint
Fire Science Program to P. C. Goebel, R. G. Corace, D. Hix, R. Kolka, B.
Palik, E. Toman and R. Wilson.
NR 105
TC 5
Z9 6
U1 4
U2 39
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1999-4907
J9 FORESTS
JI Forests
PD DEC
PY 2012
VL 3
IS 4
BP 1034
EP 1070
DI 10.3390/f3041034
PG 37
WC Forestry
SC Forestry
GA 096PG
UT WOS:000315416100012
ER
PT J
AU Scott, DA
Bliss, CM
AF Scott, D. Andrew
Bliss, Christine M.
TI Phosphorus Fertilizer Rate, Soil P Availability, and Long-Term Growth
Response in a Loblolly Pine Plantation on a Weathered Ultisol
SO FORESTS
LA English
DT Article
DE loblolly pine; phosphorus fertilization; phosphorus fractionation
ID SOUTHERN UNITED-STATES; PLAIN FOREST SOILS; COASTAL-PLAIN; RUNOFF;
RELEASE; LOSSES; WATER; BIOAVAILABILITY; PRODUCTIVITY; RETENTION
AB Phosphorus is widely deficient throughout the southern pine region of the United States. Growth responses to P fertilization are generally long-lasting in a wide range of soil types, but little is known about fertilization rates and long-term P cycling and availability. In 1982, exceptionally high P fertilization rates (0, 81, 162, and 324 kg P ha(-1)) were applied to a loamy Ultisol in central Louisiana, USA. We measured vegetation responses at age 27 years and sequentially extracted soil P to 1 m to elucidate potential P availability into the next rotation. Loblolly pine responded well to the lowest fertilization rate; total biomass was 39% greater in the fertilized plots compared to the unfertilized plots, but higher fertilization rates had no effect, presumably due to induced N-limitations. What little fertilizer P was found in the soils was in the moderately labile NaOH fraction in the surface 20 cm, and may be slowly available to the next pine rotation. Normal rates of P fertilizer will maintain elevated available P well into a second rotation in loamy Pleisteocene Ultisols of the western Gulf Coastal Plain. Exceptionally high rates were not effective at increasing potentially available P beyond normal rates.
C1 [Scott, D. Andrew] US Forest Serv, Southern Res Stn, USDA, Normal, AL 35762 USA.
[Bliss, Christine M.] Univ Florida, North Florida Res & Educ Ctr, Gainesville, FL 32351 USA.
RP Scott, DA (reprint author), US Forest Serv, Southern Res Stn, USDA, POB 1927, Normal, AL 35762 USA.
EM andyscott@fs.fed.us; cbliss@ufl.edu
OI Scott, D. Andrew/0000-0002-2592-1522
NR 57
TC 0
Z9 0
U1 0
U2 15
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1999-4907
J9 FORESTS
JI Forests
PD DEC
PY 2012
VL 3
IS 4
BP 1071
EP 1085
DI 10.3390/f3041071
PG 15
WC Forestry
SC Forestry
GA 096PG
UT WOS:000315416100013
ER
PT J
AU Magruder, M
Chhin, S
Monks, A
O'Brien, J
AF Magruder, Matthew
Chhin, Sophan
Monks, Andrew
O'Brien, Joseph
TI Effects of Initial Stand Density and Climate on Red Pine Productivity
within Huron National Forest, Michigan, USA
SO FORESTS
LA English
DT Article
DE climatic resiliency; dendrochronology; initial stand density; Pinus
resinosa; red pine; silviculture
ID TREE-RING CHRONOLOGIES; CATASTROPHIC WIND; LODGEPOLE PINE; GREAT-LAKES;
GROWTH; DIAMETER; DROUGHT; CONIFER; DAMAGE; MODEL
AB Changes in climate are predicted to significantly affect the productivity of trees in the Great Lakes region over the next century. Forest management decisions, such as initial stand density, can promote climatic resiliency and moderate decreased productivity through the reduction of tree competition. The influences of climate (temperature and precipitation) and forest management (initial stand density) on the productivity of red pine (Pinus resinosa) across multiple sites within Huron National Forest, Michigan, were examined using dendrochronological methods. Two common planting regimes were compared in this analysis; low initial density (<988 trees per hectare) and high initial density (>1977 trees per hectare). Low initial density stands were found to have a higher climatic resilience by combining equal or greater measures of productivity, while having a reduced sensitivity to monthly and seasonal climate, particularly to summer drought.
C1 [Magruder, Matthew; Chhin, Sophan; Monks, Andrew] Michigan State Univ, Dept Forestry, E Lansing, MI 48824 USA.
[O'Brien, Joseph] US Forest Serv, St Paul, MN 55108 USA.
RP Chhin, S (reprint author), Michigan State Univ, Dept Forestry, Nat Resources Bldg,480 Wilson Rd,Room 126, E Lansing, MI 48824 USA.
EM magrude4@msu.edu; chhin@msu.edu; dmmonks@gmail.com; jobrien@fs.fed.us
FU USDA Forest Service (Forest Health Protection) grant; Michigan State
University AgBioResearch [MICL06002]
FX This study was funded through the USDA Forest Service (Forest Health
Protection) grant and Michigan State University AgBioResearch (Project #
MICL06002). We thank Karlis Lazda (US Forest Service) for logistical
support with working in the Huron National Forest and Aristarque Djoko
and Molly Rooney for their assistance in the field and laboratory data
collection. We thank three anonymous reviewers for providing
constructive feedback on a previous version of the manuscript.
NR 43
TC 5
Z9 5
U1 4
U2 35
PU MDPI AG
PI BASEL
PA ST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND
SN 1999-4907
J9 FORESTS
JI Forests
PD DEC
PY 2012
VL 3
IS 4
BP 1086
EP 1103
DI 10.3390/f3041086
PG 18
WC Forestry
SC Forestry
GA 096PG
UT WOS:000315416100014
ER
PT J
AU Gonzalez-Benecke, CA
Gezan, SA
Leduc, DJ
Martin, TA
Cropper, WP
Samuelson, LJ
AF Gonzalez-Benecke, Carlos A.
Gezan, Salvador A.
Leduc, Daniel J.
Martin, Timothy A.
Cropper, Wendell P., Jr.
Samuelson, Lisa J.
TI Modeling Survival, Yield, Volume Partitioning and Their Response to
Thinning for Longleaf Pine Plantations
SO FORESTS
LA English
DT Article
DE longleaf pine; growth and yield modeling; merchantable volume yield;
stand dynamics
ID SYLVESTRIS L. PLANTATIONS; SOUTHERN UNITED-STATES; LOBLOLLY-PINE;
COASTAL-PLAIN; SITE INDEX; GROWTH; MANAGEMENT; MORTALITY; EQUATIONS;
SPAIN
AB Longleaf pine (Pinus palustris Mill.) is an important tree species of the southeast U. S. Currently there is no comprehensive stand-level growth and yield model for the species. The model system described here estimates site index (SI) if dominant height (H-dom) and stand age are known (inversely, the model can project H-dom at any given age if SI is known). The survival (N) equation was dependent on stand age and H-dom, predicting greater mortality on stands with larger H-dom. The function that predicts stand basal area (BA) for unthinned stands was dependent on N and H-dom. For thinned stands BA was predicted with a competition index that was dependent on stand age. The function that best predicted stand stem volume (outside or inside bark) was dependent on BA and H-dom. All functions performed well for a wide range of stand ages and productivity, with coefficients of determination ranging between 0.946 (BA) and 0.998 (N). We also developed equations to estimate merchantable volume yield consisting of different combinations of threshold diameter at breast height and top diameter for longleaf pine stands. The equations presented in this study performed similarly or slightly better than other reported models to estimate future N, H-dom and BA. The system presented here provides important new tools for supporting future longleaf pine management and research.
C1 [Gonzalez-Benecke, Carlos A.; Gezan, Salvador A.; Martin, Timothy A.; Cropper, Wendell P., Jr.] Univ Florida, Sch Forest Resources & Conservat, Gainesville, FL 32611 USA.
[Leduc, Daniel J.] US Forest Serv, USDA, Southern Res Stn, Alexandria Forestry Ctr, Pineville, LA 71360 USA.
[Samuelson, Lisa J.] Auburn Univ, Sch Forestry & Wildlife Sci, Auburn, AL 36849 USA.
RP Gonzalez-Benecke, CA (reprint author), Univ Florida, Sch Forest Resources & Conservat, POB 110410, Gainesville, FL 32611 USA.
EM cgonzabe@ufl.edu; sgezan@ufl.edu; dleduc@fs.fed.us; tamartin@ufl.edu;
wcropper@ufl.edu; samuelj@auburn.edu
OI Cropper, Wendell/0000-0001-7851-7382; Martin,
Timothy/0000-0002-7872-4194
FU U.S. Department of Defense, through the Strategic Environmental Research
and Development Program (SERDP)
FX This research was supported by the U.S. Department of Defense, through
the Strategic Environmental Research and Development Program (SERDP).
The authors acknowledge the U.S. Forest Service Southern Research
Station for their assistance and for providing the long term datasets.
NR 49
TC 5
Z9 5
U1 1
U2 21
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1999-4907
J9 FORESTS
JI Forests
PD DEC
PY 2012
VL 3
IS 4
BP 1104
EP 1132
DI 10.3390/f3041104
PG 29
WC Forestry
SC Forestry
GA 096PG
UT WOS:000315416100015
ER
PT J
AU Kim, KO
Shin, KS
Kim, MN
Shin, KS
Labeda, DP
Han, JH
Kim, SB
AF Kim, Kyoung-Ok
Shin, Kwang-Soo
Kim, Mi Na
Shin, Kee-Sun
Labeda, David P.
Han, Ji-Hye
Kim, Seung Bum
TI Reassessment of the status of Streptomyces setonii and reclassification
of Streptomyces fimicarius as a later synonym of Streptomyces setonii
and Streptomyces albovinaceus as a later synonym of Streptomyces
globisporus based on combined 16S rRNA/gyrB gene sequence analysis
SO INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
LA English
DT Article
ID DNA-DNA HYBRIDIZATION; PHYLOGENETIC ANALYSIS; GYRB SEQUENCES; SP NOV.;
CLASSIFICATION; RELATEDNESS; STRAINS; POTATO; SCAB
AB The 16S rRNA and gyrB genes of 22 Streptomyces strains belonging to the Streptomyces griseus cluster were sequenced, and their taxonomic positions were re-evaluated. For correct analysis, all of the publicly available sequences of the species were collected and compared with those obtained in this study. Species for which no consensus sequence could be identified were excluded from the phylogenetic analysis. The levels of 16S rRNA gene sequence similarity within the cluster ranged from 98.6 to 100% with a mean value of 99.6 +/- 0.3%, and those of the gyrB gene ranged from 93.6 to 99.9% with a mean value of 96.3 +/- 1.5%. The observed average nucleotide substitution rate of the gyrB gene was ten times higher than that of the 16S rRNA gene, showing a far higher degree of variation. Strains sharing 99.3% or more gyrB sequence similarity (corresponding to an evolutionary distance of 0.0073) always formed monophyletic groups in both trees. Through the combined analysis of the two genes, clear cases of synonymy could be identified and, according to the priority rule, the assertion of the status of Streptomyces setonii as a distinct species and the reclassification of Streptomyces fimicarius as a later synonym of S. setonii and Streptomyces albovinaceus as a later synonym of Streptomyces globisporus are proposed. Emended descriptions of S. setonii and S. globisporus are provided.
C1 [Kim, Kyoung-Ok; Shin, Kwang-Soo] Daejeon Univ, Dept Microbiol & Biotechnol, Taejon 300716, South Korea.
[Kim, Mi Na; Shin, Kee-Sun] Korea Res Inst Biosci & Biotechnol, Taejon 305333, South Korea.
[Labeda, David P.] USDA ARS, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
[Han, Ji-Hye; Kim, Seung Bum] Chungnam Natl Univ, Dept Microbiol & Mol Biol, Taejon 305764, South Korea.
RP Kim, SB (reprint author), Chungnam Natl Univ, Dept Microbiol & Mol Biol, 220 Gung Dong, Taejon 305764, South Korea.
EM sbk01@cnu.ac.kr
FU Biogreen 21 program [20080401-034-028-009-02-00]; Rural Development
Administration, Korea; National Research Foundation of Korea grant
[R01-2007-000-21120-0]
FX This work was supported by a grant from the Biogreen 21 program (no.
20080401-034-028-009-02-00) funded by the Rural Development
Administration, Korea, and also by a National Research Foundation of
Korea grant (no. R01-2007-000-21120-0). Mention of trade names or
commercial products in this publication is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the US Department of Agriculture. USDA is an equal
opportunity provider and employer.
NR 37
TC 2
Z9 2
U1 0
U2 3
PU SOC GENERAL MICROBIOLOGY
PI READING
PA MARLBOROUGH HOUSE, BASINGSTOKE RD, SPENCERS WOODS, READING RG7 1AG,
BERKS, ENGLAND
SN 1466-5026
J9 INT J SYST EVOL MICR
JI Int. J. Syst. Evol. Microbiol.
PD DEC
PY 2012
VL 62
BP 2978
EP 2985
DI 10.1099/ijs.0.040287-0
PN 12
PG 8
WC Microbiology
SC Microbiology
GA 091SL
UT WOS:000315070000026
PM 22286909
ER
PT J
AU Peter, G
Dlauchy, D
Price, NPJ
Kurtzman, CP
AF Peter, Gabor
Dlauchy, Denes
Price, Neil P. J.
Kurtzman, Cletus P.
TI Diddensiella caesifluorescens gen. nov., sp nov., a riboflavin-producing
yeast species of the family Trichomonascaceae
SO INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
LA English
DT Article
ID CANDIDA; SUGIYAMAELLA; SEQUENCES; MEMBER
AB Four strains of a novel heterothallic yeast species were isolated from rotten wood collected in or near the Pi lis Mountains in Hungary. The strains produced riboflavin in liquid culture. Analysis of gene sequences for the D1/D2 domains of the LSU nuclear rRNA, as well as analysis of concatenated gene sequences for the D1/D2 nuclear LSU rRNA, mitochondrial SSU rRNA and cytochrome oxidase II placed the novel species in a small clade including only two recognized species, Candida santjacobensis and Candida transvaalensis, in the family Trichomonascaceae. DNA sequence analyses demonstrated that the novel species was distinct from all currently recognized teleomorphic yeast genera. The name Diddensiella caesifluorescens gen nov., sp. nov. is proposed to accommodate the novel genus and species. The new genus proposed here can be recognized only from gene sequence analysis, because the characters of its asexual reproduction and ascospore formation are shared by several members of the genera Trichomonascus, Sugiyamaella and Spencermartinsiella. The type and isotype strains of D. caesifluorescens are NCAIM Y.01949(T) (=NRRL Y-48781(T)=CBS 12613(T)) and NCAIM Y.01956(T)(=NRRL Y-48782(T)=CBS 12614(T)), respectively. In view of their close relatedness to D. caesifluorescens, C. santjacobensis and C. transvaalensis are transferred to the genus Diddensiella as new combinations in accordance with changes in the International Code of Nomenclature for algae, fungi and plants.
C1 [Peter, Gabor; Dlauchy, Denes] Corvinus Univ Budapest, Fac Food Sci, H-1118 Budapest, Hungary.
[Price, Neil P. J.] USDA ARS, Renewable Prod Technol Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
[Kurtzman, Cletus P.] USDA ARS, Bacterial Foodborne Pathogens & Mycol Res Unit, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA.
RP Peter, G (reprint author), Corvinus Univ Budapest, Fac Food Sci, Somloi Ut 14-16, H-1118 Budapest, Hungary.
EM gabor.peter@uni-corvinus.hu
RI Peter, Gabor/E-9228-2010
NR 22
TC 2
Z9 2
U1 0
U2 1
PU SOC GENERAL MICROBIOLOGY
PI READING
PA MARLBOROUGH HOUSE, BASINGSTOKE RD, SPENCERS WOODS, READING RG7 1AG,
BERKS, ENGLAND
SN 1466-5026
J9 INT J SYST EVOL MICR
JI Int. J. Syst. Evol. Microbiol.
PD DEC
PY 2012
VL 62
BP 3081
EP 3087
DI 10.1099/ijs.0.042895-0
PN 12
PG 7
WC Microbiology
SC Microbiology
GA 091SL
UT WOS:000315070000043
PM 22843712
ER
PT J
AU Ehrlich, KC
Mack, BM
Wei, QJ
Li, P
Roze, LV
Dazzo, F
Cary, JW
Bhatnagar, D
Linz, JE
AF Ehrlich, Kenneth C.
Mack, Brian M.
Wei, Qijian
Li, Ping
Roze, Ludmila V.
Dazzo, Frank
Cary, Jeffrey W.
Bhatnagar, Deepak
Linz, John E.
TI Association with AflR in Endosomes Reveals New Functions for AflJ in
Aflatoxin Biosynthesis
SO TOXINS
LA English
DT Article
DE aflatoxin; protein trafficking; Aspergillus parasiticus; aflatoxin;
aflatoxisomes; endosomes; AflJ; AflR
ID ASPERGILLUS-PARASITICUS; SECONDARY METABOLISM; STRESS-RESPONSE;
GENE-CLUSTER; MYCOTOXIN CONTAMINATION; ARABIDOPSIS-THALIANA; PATHWAY;
HEALTH; FLAVUS; TRANSCRIPTION
AB Aflatoxins are the most potent naturally occurring carcinogens of fungal origin. Biosynthesis of aflatoxin involves the coordinated expression of more than 25 genes. The function of one gene in the aflatoxin gene cluster, aflJ, is not entirely understood but, because previous studies demonstrated a physical interaction between the Zn(2)Cys(6) transcription factor AflR and AflJ, AflJ was proposed to act as a transcriptional co-activator. Image analysis revealed that, in the absence of aflJ in A. parasiticus, endosomes cluster within cells and near septa. AflJ fused to yellow fluorescent protein complemented the mutation in A. parasiticus Delta flJ and localized mainly in endosomes. We found that AflJ co-localizes with AflR both in endosomes and in nuclei. Chromatin immunoprecipitation did not detect AflJ binding at known AflR DNA recognition sites suggesting that AflJ either does not bind to these sites or binds to them transiently. Based on these data, we hypothesize that AflJ assists in AflR transport to or from the nucleus, thus controlling the availability of AflR for transcriptional activation of aflatoxin biosynthesis cluster genes. AflJ may also assist in directing endosomes to the cytoplasmic membrane for aflatoxin export.
C1 [Ehrlich, Kenneth C.; Mack, Brian M.; Wei, Qijian; Li, Ping; Cary, Jeffrey W.; Bhatnagar, Deepak] ARS, So Reg Res Ctr, USDA, New Orleans, LA 70124 USA.
[Roze, Ludmila V.; Linz, John E.] Michigan State Univ, Dept Food Sci & Human Nutr, E Lansing, MI USA.
[Dazzo, Frank] Michigan State Univ, Dept Microbiol & Mol Genet, E Lansing, MI USA.
RP Ehrlich, KC (reprint author), ARS, So Reg Res Ctr, USDA, 1100 Robert E Lee Blvd, New Orleans, LA 70124 USA.
EM ken.ehrlich@ars.usda.gov; brian.mack@ars.usda.gov;
qijian.wei@ars.usda.gov; ping.li@ars.usda.gov; roze@msu.edu;
dazzo@msu.edu; jeff.cary@ars.usda.gov; deepak.bhatnagar@ars.usda.gov;
jlinz@msu.edu
FU CRIS Project [6435-42000-005-00D]; NIH (NCI) [R01CA52003-20]; Michigan
AgBio Research; Internal Research Grants Program (MSU)
FX This work was supported by CRIS Project Number 6435-42000-005-00D and a
grant from NIH (NCI) R01CA52003-20, Michigan AgBio Research (formerly
known as the Agricultural Experiment Station), and the Internal Research
Grants Program (MSU) (to J.E Linz and L.V. Roze).
NR 49
TC 10
Z9 12
U1 7
U2 23
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 2072-6651
J9 TOXINS
JI Toxins
PD DEC
PY 2012
VL 4
IS 12
BP 1582
EP 1600
DI 10.3390/toxins4121582
PG 19
WC Toxicology
SC Toxicology
GA 096LY
UT WOS:000315406800012
PM 23342682
ER
PT J
AU Phelps, NBD
Armien, AG
Mor, SK
Goyal, SM
Warg, JV
Bhagyam, R
Monahan, T
AF Phelps, Nicholas B. D.
Armien, Anibal G.
Mor, Sunil K.
Goyal, Sagar M.
Warg, Janet V.
Bhagyam, Ranjit
Monahan, Tim
TI Spring Viremia of Carp Virus in Minnehaha Creek, Minnesota
SO JOURNAL OF AQUATIC ANIMAL HEALTH
LA English
DT Article
ID NORTH-AMERICA; 1ST REPORT; SVCV; RHABDOVIRUS
AB Spring viremia of carp virus (SVCV) causes a highly contagious and serious disease of freshwater cyprinid fishes, generating significant economic and ecological impacts throughout the world. The SVCV is therefore listed as a notifiable pathogen by the International Organization for Animal Health. In June 2011, a significant mortality event of wild common carp Cyprinus carpio occurred in Minnehaha Creek near its confluence with Mississippi River Pool 2 in Minneapolis, Minnesota. Clinical signs of moribund fish included hemorrhagic lesions in the skin, eyes, and internal adipose tissue. The SVCV was isolated from pooled kidney and spleen of the fish. Rhabdovirus particles were seen upon examination of infected cell culture fluid by electron microscopy. The virus was confirmed to be SVCV subtype Ia by reverse transcription PCR and sequencing. This is the first report of SVCV within the state of Minnesota and the ninth documented case in North America. Received March 27, 2012; accepted July 2, 2012
C1 [Phelps, Nicholas B. D.; Armien, Anibal G.; Mor, Sunil K.; Goyal, Sagar M.] Univ Minnesota, Coll Vet Med, Dept Vet Populat Med, St Paul, MN 55108 USA.
[Warg, Janet V.] Anim & Plant Hlth Inspect Serv, USDA, Diagnost Virol Lab, Natl Vet Serv Labs, Ames, IA 50010 USA.
[Bhagyam, Ranjit; Monahan, Tim] Minnesota Dept Nat Resources, St Paul, MN 55155 USA.
RP Phelps, NBD (reprint author), Univ Minnesota, Coll Vet Med, Dept Vet Populat Med, 1333 Gortner Ave, St Paul, MN 55108 USA.
EM phelp083@umn.edu
NR 16
TC 11
Z9 12
U1 0
U2 18
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0899-7659
J9 J AQUAT ANIM HEALTH
JI J. Aquat. Anim. Health
PD DEC 1
PY 2012
VL 24
IS 4
BP 232
EP 237
DI 10.1080/08997659.2012.711267
PG 6
WC Fisheries; Veterinary Sciences
SC Fisheries; Veterinary Sciences
GA 089LX
UT WOS:000314913200005
PM 23072656
ER
PT J
AU Beck, BH
Fuller, SA
AF Beck, Benjamin H.
Fuller, S. Adam
TI The Impact of Mitochondrial and Thermal Stress on the Bioenergetics and
Reserve Respiratory Capacity of Fish Cell Lines
SO JOURNAL OF AQUATIC ANIMAL HEALTH
LA English
DT Article
ID TROUT ONCORHYNCHUS-MYKISS; HEAT-SHOCK; GENE-EXPRESSION; MORONE-CHRYSOPS;
STRIPED BASS; FRESH-WATER; TEMPERATURE; RESPONSES; TRANSFECTION;
DYSFUNCTION
AB Various stressors affect the health of wild and cultured fish and can cause metabolic disturbances that first manifest at the cellular level. Here, we sought to further our understanding of cellular metabolism in fish by examining the metabolic responses of cell lines derived from channel catfish Ictalurus puntatus (CCO), white bass Morone chrysops (WBE), and fathead minnow Pimephales promelas (EPC) to both mitochondrial and thermal stressors. Using extracellular flux (EF) technology, we simultaneously measured the oxygen consumption rate (OCR; a measure of mitochondrial function) and extracellular acidification rate (ECAR; a surrogate of glycolysis) in each cell type. We performed a mitochondrial function protocol whereby compounds modulating different components of mitochondrial respiration were sequentially exposed to cells. This provided us with basal and maximal OCR, OCR linked to ATP production, OCR from ion movement across the mitochondrial inner membrane, the reserve capacity, and OCR independent of the electron transport chain. After heat shock, EPC and CCO significantly decreased OCR and all three cell lines modestly increased ECAR. After heat shock, the reserve capacity, the mitochondrial energetic reserve used to cope with stress and increased bioenergetic demand, was unaffected in EPC and CCO and completely abrogated in WBE. These findings provide proof-of-concept experimental data that further highlight the utility of fish cell lines as tools for modeling bioenergetics. Received April 12, 2012; accepted August 5, 2012
C1 [Beck, Benjamin H.; Fuller, S. Adam] ARS, USDA, Harry K Dupree Stuttgart Natl Aquaculture Res Ctr, Stuttgart, AR 72160 USA.
RP Beck, BH (reprint author), ARS, USDA, Harry K Dupree Stuttgart Natl Aquaculture Res Ctr, POB 1050, Stuttgart, AR 72160 USA.
EM benjamin.beck@ars.usda.gov
FU U.S. Department of Agriculture (USDA), Agricultural Research Service
[6225-31630-006-00]
FX The authors thank Matt Barnett for his technical assistance and
expertise. We also thank Bradley Farmer, Ken Davis, Dave Straus, and
Kyle Feeley for carefully reviewing the manuscript. This study was
funded by the U.S. Department of Agriculture (USDA), Agricultural
Research Service under project number 6225-31630-006-00. The USDA is an
equal opportunity provider and employer. Mention of trade names or
commercial products in this publication is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the USDA.
NR 45
TC 3
Z9 3
U1 2
U2 19
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0899-7659
J9 J AQUAT ANIM HEALTH
JI J. Aquat. Anim. Health
PD DEC 1
PY 2012
VL 24
IS 4
BP 244
EP 250
DI 10.1080/08997659.2012.720637
PG 7
WC Fisheries; Veterinary Sciences
SC Fisheries; Veterinary Sciences
GA 089LX
UT WOS:000314913200007
PM 23113865
ER
PT J
AU Brenner, K
Oliveira, ACM
Rosenkranz, G
Burt, R
Spafard, M
Bechtel, PJ
Crapo, CA
Ralonde, R
AF Brenner, Kathryn
Oliveira, Alexandra C. M.
Rosenkranz, Gregg
Burt, Ryan
Spafard, Marsha
Bechtel, Peter J.
Crapo, Charles A.
Ralonde, Raymond
TI QUALITY OF WEATHERVANE SCALLOPS (PATINOPECTEN CAURINUS) FROM EASTERN AND
WESTERN GULF OF ALASKA
SO JOURNAL OF SHELLFISH RESEARCH
LA English
DT Article
DE Patinopecten caurinus; weathervane scallop; scallop quality; shellfish
quality
ID PLACOPECTEN-MAGELLANICUS GMELIN; HINNITES-MULTIRUGOSUS GALE; LIPID CLASS
COMPOSITION; FATTY-ACID-COMPOSITION; PACIFIC SEA SCALLOP; HINGE ROCK
SCALLOP; BANK NOVA-SCOTIA; ADDUCTOR MUSCLE; PROXIMATE COMPOSITION;
ULTIMATE PH
AB Weathervane scallops (Patinopecten caurinus) have been harvested commercially in Alaska since 1967. From the beginning, vessel operators in the eastern Gulf of Alaska have reported poor scallop adductor muscle quality characterized by tissue of stringy texture that tears easily during shucking. The Alaska scallop industry designates these scallops as "weak meats" and has difficulty marketing the product. Our research objective was to quantify variability in the quality of adductor muscle of Alaskan weathervane scallops. Physical measurements and chemical composition analyses were conducted for 2 groups of whole scallops from Yakutat (weak and standard) and 2 groups of scallop adductor muscles from Kodiak (Kodiak 1 and Kodiak 2). Moisture content was significantly higher (P<0.05) in weak than in standard adductor muscles. Glycogen content was similar (P>0.05) for standard, Kodiak 1, and Kodiak 2 adductor muscles, but was significantly lower (P < 0.05) in weak adductor muscles. Muscle condition indices were significantly lower (P<0.05) in weak than in standard adductor muscles. Results indicate that weak adductor muscle samples were lower in overall quality than the other 3 groups. Further investigation into the biological causes of weak adductor muscle in the eastern Gulf of Alaska scallops is warranted.
C1 [Brenner, Kathryn; Oliveira, Alexandra C. M.; Crapo, Charles A.] Univ Alaska Fairbanks, Fishery Ind Technol Ctr, Kodiak, AK 99615 USA.
[Rosenkranz, Gregg; Burt, Ryan; Spafard, Marsha] Alaska Dept Fish & Game, Div Commercial Fisheries, Kodiak, AK 99615 USA.
[Bechtel, Peter J.] ARS, USDA, Seafood Lab, Kodiak, AK 99615 USA.
[Crapo, Charles A.; Ralonde, Raymond] Univ Alaska Fairbanks, Marine Advisory Program, Anchorage, AK 99501 USA.
RP Oliveira, ACM (reprint author), Univ Alaska Fairbanks, Fishery Ind Technol Ctr, Alfred Owen Bldg,118 Trident Way, Kodiak, AK 99615 USA.
EM acoliveira@alaska.edu
NR 76
TC 4
Z9 4
U1 0
U2 7
PU NATL SHELLFISHERIES ASSOC
PI GROTON
PA C/O DR. SANDRA E. SHUMWAY, UNIV CONNECTICUT, 1080 SHENNECOSSETT RD,
GROTON, CT 06340 USA
SN 0730-8000
J9 J SHELLFISH RES
JI J. Shellfish Res.
PD DEC
PY 2012
VL 31
IS 4
BP 1123
EP 1132
DI 10.2983/035.031.0423
PG 10
WC Fisheries; Marine & Freshwater Biology
SC Fisheries; Marine & Freshwater Biology
GA 068TN
UT WOS:000313389200023
ER
PT J
AU Taverner, PD
Sutton, C
Cunningham, NM
Myers, SW
AF Taverner, Peter D.
Sutton, Clay
Cunningham, Nancy M.
Myers, Scott W.
TI The potential of mineral oils alone and with reduced rates of
insecticides for the control of light brown apple moth, Epiphyas
postvittana (Walker) (Lepidoptera: Tortricidae), on nursery plants
SO CROP PROTECTION
LA English
DT Article
DE Epiphyas postvittana; Ornamentals; Reduced risk pesticides;
Horticultural mineral oils
ID EFFICACY; BIOLOGY
AB The aim of the research was to identify alternatives to chlorpyrifos for the control of light brown apple moth, Epiphyas postvittana, on nursery and ornamental plants. Viburnum tinus L. a commonly grown nursery plant, were infested with E. postvittana eggs, sprayed to run-off and mortality recorded. Several treatments were identified as equally efficacious as the standard chlorpyrifos spray (500 mu g/l). The insecticides that compared most favorably with chlorpyrifos were lambda-cyhalothrin and gamma-cyhalothrin. Four horticultural mineral oils demonstrated good ovicidal properties when evaluated alone versus when combined with reduced rates of the above insecticides or spinosad, imidacloprid or thiacloprid. The response of some insecticide and horticultural mineral oil combinations varied, suggesting that the oil selected may be important. Chlorpyrifos, lambda-cyhalothrin, gamma-cyhalothrin and spinosad provided similarly high levels of residual control of neonates for up to 10 d from application. Mixtures of UltraPure, an nC21 horticultural mineral oil, with reduced rates of the above insecticides maintained residual efficacy. Alternative treatments evaluated in this study may provide a high level of E. postvittana control through egg mortality and residual effects on emerging neonates over the hatching period. Field trials are required to verify the potential of these alternatives for commercial application. (C) 2012 Elsevier Ltd. All rights reserved.
C1 [Taverner, Peter D.; Sutton, Clay; Cunningham, Nancy M.] S Australian Res & Dev Inst, Entomol Unit, Adelaide, SA 5000, Australia.
[Myers, Scott W.] USDA, APHIS, PPQ, Pest Survey Detect & Exclus Lab, Buzzards Bay, MA 02542 USA.
RP Taverner, PD (reprint author), S Australian Res & Dev Inst, Entomol Unit, Box 397 GPO,Main Waite Bldg,Waite Rd, Adelaide, SA 5000, Australia.
EM peter.taverner@sa.gov.au
FU USDA-APHIS-PPQ Light Brown Apple Moth Program [T7B01]
FX The authors thank Karolina Steciuk for maintaining insect cultures and
other technical assistance. We thank Steve Tjosvold and Andrew Beattie
for their critical review of this manuscript. This research was
supported by USDA-APHIS-PPQ Light Brown Apple Moth Program, Project
#T7B01.
NR 25
TC 1
Z9 1
U1 2
U2 12
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0261-2194
J9 CROP PROT
JI Crop Prot.
PD DEC
PY 2012
VL 42
BP 83
EP 87
DI 10.1016/j.cropro.2012.07.025
PG 5
WC Agronomy
SC Agriculture
GA 070SM
UT WOS:000313531300014
ER
PT J
AU Gavin, WE
Mueller-Warrant, GW
Griffith, SM
Banowetz, GM
AF Gavin, W. E.
Mueller-Warrant, G. W.
Griffith, S. M.
Banowetz, G. M.
TI Removal of molluscicidal bait pellets by earthworms and its impact on
control of the gray field slug (Derocerus reticulatum Mueller) in
western Oregon grass seed fields
SO CROP PROTECTION
LA English
DT Article
DE Crop residues; Grass seed production; Lumbricus terrestris
ID RESIDUE MANAGEMENT; TILLAGE SYSTEMS; IRON PHOSPHATE; METALDEHYDE;
POPULATIONS; ABUNDANCE; SOILS
AB Slugs are common pests of grass seed fields in western Oregon and the current focus of repeated, and often unsuccessful, efforts by growers to control them using molluscicides. Here we document rapid loss of molluscicidal bait pellets to earthworms and the resulting adverse effects on slug control. Three years of field studies were conducted at 17 locations with contrasting crops, soil types, residue levels, and tillage management programs. Baits were isolated in covered, sunken, open bottom arenas in the field to exclude removal by slugs, rodents, or birds. Forty hours of nighttime field observations and photographic documentation were collected to support the hypothesis that earthworms were removing slug bait before it had the opportunity to kill slugs. Greenhouse studies were conducted on the gray field slug (Derocerus reticula turn Mueller), in screen-topped arenas to determine the effects on mortality, seedling survival, and egg fecundity in a bait-depleting environment. Field data showed that an average of 17% of all bait pellet types were removed nightly by earthworms, with a range of 5.1-6.4 days until 100% disappearance. Individual earthworms in the field were observed removing up to three bait pellets per hour. Earthworms removed a 5% metaldehyde formulation significantly faster than either 4% metaldehyde or 1% iron phosphate pellet baits, possibly because of the smaller physical pellet size. Seedling survival in the greenhouse >= 65% was achieved by the highest rate of 4% metaldehyde bait pellets, the two highest rates of 7.5% metaldehyde granules, and the two highest rates of 25% metaldehyde liquid formulation. Earthworms showed no behavioral interest in the granular or liquid formulations, providing growers with attractive alternatives to the ineffectual pelleted baits currently in widespread use. Published by Elsevier Ltd.
C1 [Gavin, W. E.] Oregon State Univ, Dept Crop & Soil Sci, Corvallis, OR 97331 USA.
[Mueller-Warrant, G. W.; Griffith, S. M.; Banowetz, G. M.] ARS, USDA, Corvallis, OR 97331 USA.
RP Banowetz, GM (reprint author), ARS, USDA, 3450 SW Campus Way, Corvallis, OR 97331 USA.
EM gavinw@onid.orst.edu; George.Mueller-Warrant@ars.usda.gov;
Steve.Griffith@ars.usda.gov; Gary.Banowetz@ars.usda.gov
NR 31
TC 5
Z9 5
U1 2
U2 29
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0261-2194
J9 CROP PROT
JI Crop Prot.
PD DEC
PY 2012
VL 42
BP 94
EP 101
DI 10.1016/j.cropro.2012.05.023
PG 8
WC Agronomy
SC Agriculture
GA 070SM
UT WOS:000313531300016
ER
PT J
AU Copes, WE
Hagan, A
Olive, J
AF Copes, Warren E.
Hagan, Austin
Olive, John
TI Timing of fungicides in relation to calendar date, weather, and disease
thresholds to control Rhizoctonia web blight on container-grown azalea
SO CROP PROTECTION
LA English
DT Article
DE Web blight; Fungicide timing; Decision criterion; Disease threshold
ID CERCOSPORA LEAF-SPOT; BINUCLEATE RHIZOCTONIA; PERENNIAL RYEGRASS;
SUGAR-BEET; MANAGEMENT; INFECTION
AB Rhizoctonia web blight, caused by binucleate Rhizoctonia spp., is an annual problem in the southern United States on container-grown azaleas (Rhododendron spp.) that receive daily irrigation. Fungicides are the only practical control method, but a guideline for timing of fungicides is not available. Typically, producers apply fungicides in July based on past experiences such as when frequent afternoon rains are forecast, or after severe blight symptoms develop. The objective of the study was to evaluate fungicide timing criteria, including a calendar schedule, and disease incidence and decision-based weather thresholds. Experiments with a randomized complete block design were performed at a site in AL and MS for three years. For 2009, 2010, treatments included a non-treated control and five treatments where fungicide timing was based on a calendar schedule, three disease threshold criteria and a rain frequency criterion. In 2011, treatments included a non-treated control, a calendar schedule, and two disease threshold criteria. The calendar schedule was the only timing treatment that resulted in significantly less blight incidence than the control in all experiments. Fungicide application based on the lowest disease threshold (16-30 blight leaves per plant quadrant) and the rain frequency criteria (>3 rain events of >6.3 mm rain within the previous seven days) suppressed blight development equal to the calendar schedule in three experiments and all other criteria provided equal disease suppression in at least one experiment. While not tested in combination, the recommendation is to schedule fungicide applications based on calendar-dates (the most consistently reliable criterion), and use the disease threshold of >16 blighted leaves per plant quadrant (a moderately reliable criterion) to adjust timing within 1-2 weeks of the calendar-date in response to year-to-year differences in disease pressure, which can vary due to weather variables such as rainfall frequency (a moderately reliable criterion). Published by Elsevier Ltd.
C1 [Copes, Warren E.] USDA ARS, Thad Cochran So Hort Lab, Poplarville, MS 39470 USA.
[Hagan, Austin] Auburn Univ, Dept Plant Pathol, Auburn, AL 36849 USA.
[Olive, John] Auburn Univ, Ornamental Hort Res Ctr, Mobile, AL 36689 USA.
RP Copes, WE (reprint author), USDA ARS, Thad Cochran So Hort Lab, 810 Hwy 26 W,POB 287, Poplarville, MS 39470 USA.
EM warren.copes@ars.usda.gov
FU US Department of Agriculture, Agricultural Research Service, Thad
Cochran Southern Horticultural Laboratory, Southern Horticultural
Research Unit [6404-21430-001-00D]
FX This research was supported through the US Department of Agriculture,
Agricultural Research Service, Thad Cochran Southern Horticultural
Laboratory, Southern Horticultural Research Unit project number
6404-21430-001-00D.
NR 16
TC 2
Z9 2
U1 0
U2 9
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0261-2194
J9 CROP PROT
JI Crop Prot.
PD DEC
PY 2012
VL 42
BP 273
EP 280
DI 10.1016/j.cropro.2012.07.008
PG 8
WC Agronomy
SC Agriculture
GA 070SM
UT WOS:000313531300042
ER
PT J
AU Fayer, R
AF Fayer, Ronald
TI INTRODUCTION OF LIHUA XIAO, RECIPIENT OF THE HENRY BALDWIN WARD MEDAL
FOR 2012
SO JOURNAL OF PARASITOLOGY
LA English
DT Editorial Material
C1 ARS, USDA, Beltsville, MD USA.
RP Fayer, R (reprint author), ARS, USDA, Beltsville, MD USA.
EM ronald.fayer@ars.usda.gov
NR 4
TC 0
Z9 0
U1 0
U2 1
PU AMER SOC PARASITOLOGISTS
PI LAWRENCE
PA 810 EAST 10TH STREET, LAWRENCE, KS 66044 USA
SN 0022-3395
J9 J PARASITOL
JI J. Parasitol.
PD DEC
PY 2012
VL 98
IS 6
BP 1071
EP 1072
DI 10.1645/12-56.1
PG 2
WC Parasitology
SC Parasitology
GA 068VM
UT WOS:000313394300004
PM 22921190
ER
PT J
AU Alvarado-Esquivel, C
Estrada-Malacon, MA
Reyes-Hernandez, SO
Perez-Ramirez, JA
Trujillo-Lopez, JI
Villena, I
Dubey, JP
AF Alvarado-Esquivel, C.
Estrada-Malacon, M. A.
Reyes-Hernandez, S. O.
Perez-Ramirez, J. A.
Trujillo-Lopez, J. I.
Villena, I.
Dubey, J. P.
TI High Prevalence of Toxoplasma gondii Antibodies in Domestic Pigs in
Oaxaca State, Mexico
SO JOURNAL OF PARASITOLOGY
LA English
DT Article
ID INFECTION; SEROEPIDEMIOLOGY; DURANGO
AB Pigs are important in the epidemiology of toxoplasmosis in North America. Seroprevalence of Toxoplasma gondii infection in 525 domestic pigs (337 backyard raised, 188 farm raised) in Oaxaca State, Mexico was determined using the modified agglutination test (MAT, cutoff 1:25). Antibodies to T. goudii were found in 58 (17.2%) of the 337 backyard pigs with MAT titers of 1:25 in 10, 1:50 in 12, 1:100 in 18, 1:200 in 6, 1:400 in 6, 1:800 in 3, and 1:1,600 in 3. Seropositive pigs were found in 39 (37.9%) of 103 homes in all 7 municipalities surveyed. Seroprevalence of T. gondii infection in backyard pigs varied with age, gender, geographic region, climate, and altitude. High seroprevalence was found in pigs >= 9-mo-old (40%), in females (40%), in pigs from the Istmo region (33.3%), and in those raised in a tropical climate (65%). Seroprevalence was higher (24.5%) in pigs raised at 100-660 m above sea level than in those at 20-60 m of altitude (14.2%). With respect to farm pigs, only 1 (0.5%, MAT titer 1:100) of 188 pigs from 5 farms was positive for anti-T. gondii antibodies. The results affirm that the management system (outdoor vs. indoor system with biosecurity) is a key factor in the epidemiology of porcine toxoplasmosis. Because there is no national system of determining the T. gondii infection status at the time of slaughter, precautions should be taken while handling pig carcasses, and all pork should be cooked thoroughly before human consumption.
C1 [Alvarado-Esquivel, C.] Juarez Univ Durango State, Fac Med & Nutr, Durango 34000, Mexico.
[Estrada-Malacon, M. A.; Reyes-Hernandez, S. O.; Perez-Ramirez, J. A.; Trujillo-Lopez, J. I.] Com Estatal Fomento & Protecc Pecuaria Estado Oax, Lab Diagnost Vet Valles Cent, Xoxocotlan 68160, Oaxaca, Mexico.
[Villena, I.] Hosp Maison Blanche, Lab Parasitol Mycol, Natl Reference Ctr Toxoplasmosis, Biol Resources Ctr Toxoplasma, F-51092 Reims, France.
[Dubey, J. P.] Agr Res Serv, USDA, Anim & Nat Resources Inst, Anim Parasit Dis Lab, Beltsville, MD 20705 USA.
RP Alvarado-Esquivel, C (reprint author), Juarez Univ Durango State, Fac Med & Nutr, Ave Univ S-N, Durango 34000, Mexico.
EM jitender.dubey@ars.usda.gov
RI Perez-Ramirez, Javier/B-9260-2011
NR 10
TC 6
Z9 7
U1 0
U2 7
PU AMER SOC PARASITOLOGISTS
PI LAWRENCE
PA 810 EAST 10TH STREET, LAWRENCE, KS 66044 USA
SN 0022-3395
J9 J PARASITOL
JI J. Parasitol.
PD DEC
PY 2012
VL 98
IS 6
BP 1248
EP 1250
DI 10.1645/GE-3184.1
PG 3
WC Parasitology
SC Parasitology
GA 068VM
UT WOS:000313394300030
PM 22559725
ER
PT J
AU Jenkins, MC
O'Brien, CN
Macarisin, D
Miska, K
Fetterer, R
Fayer, R
AF Jenkins, M. C.
O'Brien, C. N.
Macarisin, D.
Miska, K.
Fetterer, R.
Fayer, R.
TI Analysis of Giardin Expression During Encystation of Giardia lamblia
SO JOURNAL OF PARASITOLOGY
LA English
DT Article
ID DIFFERENTIATION; GENES; MECHANISMS; CYSTS; TROPHOZOITES; INVITRO;
BIOLOGY; CYCLE
AB The present study analyzed giardin transcription in trophozoites and cysts during encystation of Giardia lamblia. Encystment was induced using standard methods, and the numbers of trophozoites and cysts were counted at various time points during the process. At all time points, RNA from both stages were assayed for levels of alpha2-, beta-, and delta-giardin mRNA as well as for cyst wall protein 3 (CWP3) mRNA using quantitative RT-PCR. In encystation medium, the number of G. lamblia trophozoites decreased, while the number of cysts increased between 0 and 72 hr. In trophozoites, alpha2- and beta-giardin transcription decreased over time, while delta-giardin transcription remained unchanged during the same time period. CWP3 transcription exhibited a slight increase in trophozoites at 8 hr, followed by a decrease at subsequent time points. Expression of alpha2-giardin increased at 48 hr in cysts followed by decreased expression at 72 hr, while beta- and delta-giardin expression was unchanged during encystation. CWP3 transcription gradually decreased from 24-72 hr in cysts. Consistent with previous studies, giardin proteins appeared to be disassembled into amorphous structures inside cysts during encystation. These findings represent the first analysis of giardin transcription in separate populations of trophozoites and cysts during encystation and indicate differential regulation of giardin mRNA expression by these developmental stages.
C1 [Jenkins, M. C.; O'Brien, C. N.; Macarisin, D.; Fayer, R.] Agr Res Serv, Environm Microbial & Food Safety Lab, USDA, Beltsville, MD 20705 USA.
[Miska, K.; Fetterer, R.] Agr Res Serv, Anim Parasit Dis Lab, USDA, Beltsville, MD 20705 USA.
RP Jenkins, MC (reprint author), Agr Res Serv, Environm Microbial & Food Safety Lab, USDA, Beltsville, MD 20705 USA.
EM mark.jenkins@ars.usda.gov
NR 24
TC 1
Z9 2
U1 1
U2 9
PU AMER SOC PARASITOLOGISTS
PI LAWRENCE
PA 810 EAST 10TH STREET, LAWRENCE, KS 66044 USA
SN 0022-3395
J9 J PARASITOL
JI J. Parasitol.
PD DEC
PY 2012
VL 98
IS 6
BP 1266
EP 1270
DI 10.1645/GE-2970.1
PG 5
WC Parasitology
SC Parasitology
GA 068VM
UT WOS:000313394300034
PM 22524244
ER
PT J
AU Brewer, MJ
Anderson, DJ
Armstrong, JS
AF Brewer, Michael J.
Anderson, Darwin J.
Armstrong, J. Scott
TI Comparison of Cotton Square and Boll Damage and Resulting Lint and Seed
Loss Caused by Verde Plant Bug, Creontiades signatus
SO SOUTHWESTERN ENTOMOLOGIST
LA English
DT Article
ID HETEROPTERA; HEMIPTERA; MIRIDAE; PENTATOMIDAE
AB Retention of cotton, Gossypium hirsutum L., bolls and squares (referred to as fruit retention), boll damage, and resulting lint and seed weight loss were assessed when two (2010) and three (2011) age classes of sympodial fruiting branches with different ages of squares and bolls where exposed to verde plant bug, Creontiades signatus Distant (Hemiptera: Miridae), in cages in the field. An increasing trend was observed in fruit retention from the youngest to the oldest branch age treatment for both years, and the effect was primarily determined by the age of the fruiting body. Low fruit retention (<20%) was seen in young bolls <7 days old in the first two fruiting positions from the main stem compared with >80% retention in checks not exposed to verde plant bug. In infested cages, fruit retention of young bolls was significantly less (P = 0.016) than older bolls and squares 2-3 days before bloom or younger. Similar to fruit retention results, damage of harvested bolls and lint and seed weight (using zero for abscised fruit) differed among the age of the fruiting body primarily for fruiting positions one (2010 and 2011) and two (2011) (P < 0.0001). The first two fruiting positions were the main contributors to plant productivity differences in lint and seed weight. Overall, verde plant bugs given a feeding choice reduced fruit retention in young bolls <7 days old, damaged retained bolls <11 days old, and larger bolls and young squares at least 2-3 days from bloom incurred significantly less abscission and damage. These results supported the interpretation that less fruit retention and more damage of young bolls justified a focus on protecting young bolls in a pest management program, especially during early to peak bloom when young bolls are abundant.
C1 [Brewer, Michael J.; Anderson, Darwin J.] Texas AgriLife Res & Extens Ctr Corpus Christi, Texas AgriLife Res, Corpus Christi, TX 78406 USA.
[Armstrong, J. Scott] USDA ARS, Stillwater, OK 74075 USA.
RP Brewer, MJ (reprint author), Texas AgriLife Res & Extens Ctr Corpus Christi, Texas AgriLife Res, 10345 State Hwy 44, Corpus Christi, TX 78406 USA.
EM mjbrewer@ag.tamu.edu
FU Texas State Support Committee, Cotton Incorporated, award [11-845TX]
FX We thank Jonathan Martinez and Charlene, Farias for providing field and
other technical support. This work was partially supported by a Texas
State Support Committee, Cotton Incorporated, award (11-845TX) to MJB
and JSA.
NR 16
TC 1
Z9 1
U1 0
U2 10
PU SOUTHWESTERN ENTOMOLOGICAL SOC
PI DALLAS
PA 17360 COIT RD, DALLAS, TX 75252-6599 USA
SN 0147-1724
J9 SOUTHWEST ENTOMOL
JI Southw. Entomol.
PD DEC
PY 2012
VL 37
IS 4
BP 437
EP 447
PG 11
WC Entomology
SC Entomology
GA 070VW
UT WOS:000313542600001
ER
PT J
AU Spurgeon, DW
Cooper, WR
AF Spurgeon, D. W.
Cooper, W. R.
TI Disinfestation of Beauveria bassiana from Adult Lygus hesperus Using
Ultraviolet-C Radiation
SO SOUTHWESTERN ENTOMOLOGIST
LA English
DT Article
ID HEMIPTERA-MIRIDAE; TEMPERATURE
AB The western tarnished plant bug, Lygus hesperus Knight, is an important pest of crops in the western U.S. Research on the biology of L. hesperus often relies on access to healthy insects from laboratory cultures. However, maintenance of colony vigor often requires periodic introductions of field-collected specimens or re-initiation of the colony. Either approach poses a risk of introducing diseases with the field-collected insects. We examined the potential Utility of exposure to ultraviolet light (UV-C) as a way to sterilize adult L. hesperus previously treated with spores of Beauveria bassiana (Balsamo) Vuillemin, and also examined the influence of exposure to UV-C on subsequent reproduction by lygus. Mortality of B. bassiana conidia increased rapidly with increased exposure to UV irradiation, which also delayed germination of conidia at exposure times >= 2 minutes. Based on assays 48 hours after exposure to UV, 6.45 minutes of exposure to UV-C (approximate to 130 mu W cm(-2)) reduced germination of conidia to approximately 1%. When L. hesperus adults treated with B. bassiana were exposed to UV-C for 2 hours, infection by the pathogen was greatly decreased but not eliminated. Similar exposure of untreated L. hesperus adults did not reduce subsequent fecundity. Our results suggest that routine exposure of field-collected adults to UV-C irradiation may reduce the probability of introducing B. bassiana into laboratory colonies with little or no adverse reproductive consequences.
C1 [Spurgeon, D. W.; Cooper, W. R.] ARS, USDA, WICSRU, Shafter, CA 93263 USA.
RP Spurgeon, DW (reprint author), ARS, USDA, Arid Land Agr Res Ctr, Maricopa, AZ 85139 USA.
RI Cooper, William/D-3205-2017
NR 18
TC 2
Z9 2
U1 0
U2 7
PU SOUTHWESTERN ENTOMOLOGICAL SOC
PI DALLAS
PA 17360 COIT RD, DALLAS, TX 75252-6599 USA
SN 0147-1724
J9 SOUTHWEST ENTOMOL
JI Southw. Entomol.
PD DEC
PY 2012
VL 37
IS 4
BP 449
EP 457
PG 9
WC Entomology
SC Entomology
GA 070VW
UT WOS:000313542600002
ER
PT J
AU Lopez, JD
Latheef, MA
Ree, B
Hoffmann, WC
AF Lopez, Juan D., Jr.
Latheef, M. A.
Ree, Bill
Hoffmann, Wesley C.
TI Toxicity to Adult Brown Stink Bug (Hemiptera: Pentatomidae) in a
Glass-Vial Bioassay of Selected Insecticide Mixtures
SO SOUTHWESTERN ENTOMOLOGIST
LA English
DT Article
ID COTTON; HETEROPTERA; GREEN; MIRIDAE; INJURY; DAMAGE; TEXAS
AB Recently, the brown stink bug, Euschistus servus (Say), has become the dominant species in the stink bug complex on cotton, Gossypium hirsutum L., in Central Texas. Options to control the insect depend mostly on and are limited to the use of insecticide. Data are needed to determine the toxicity of currently available insecticides to brown stink bug and develop baseline mortality to assess resistance to insecticides in Central Texas. Using a glass-vial bioassay, the LC10 and LC50 values for selected commercially formulated insecticides, the technical-grade active ingredients, and mixtures of active ingredients were determined for brown stink bugs captured in black-light traps near farmlands in Caldwell County, Texas. The LC10 and LC50 values showed the mixtures of technical-grade insecticides were 37- to 526- and 58- to 384-fold, respectively, more toxic to brown stink bug compared to the respective commercial formulations. The toxicological response of the technical-grade active ingredients relative to the mixtures varied from synergistic to antagonistic. Baseline data for brown stink bug mortality are useful for comparison with local populations should suspicion of tolerance to the insecticides develop in Central Texas. Data demonstrate lack of potentiation of the mixtures, probably because of absence of additivity or synergism in the composition of active and inert ingredients in the formulations or decreased composition of each component in the formulated mixtures.
C1 [Lopez, Juan D., Jr.; Latheef, M. A.; Hoffmann, Wesley C.] USDA ARS, SPARC, Areawide Pest Management Res Unit, College Stn, TX USA.
[Ree, Bill] Texas A&M AgriLife Extens, Bryan, TX USA.
RP Lopez, JD (reprint author), USDA ARS, SPARC, Areawide Pest Management Res Unit, College Stn, TX USA.
NR 27
TC 2
Z9 2
U1 0
U2 7
PU SOUTHWESTERN ENTOMOLOGICAL SOC
PI DALLAS
PA 17360 COIT RD, DALLAS, TX 75252-6599 USA
SN 0147-1724
J9 SOUTHWEST ENTOMOL
JI Southw. Entomol.
PD DEC
PY 2012
VL 37
IS 4
BP 459
EP 466
PG 8
WC Entomology
SC Entomology
GA 070VW
UT WOS:000313542600003
ER
PT J
AU Elliott, NC
Kieckhefer, RW
Phoofolo, MW
AF Elliott, Norman C.
Kieckhefer, Robert W.
Phoofolo, Mpho W.
TI Foraging by Hippodamia convergens for the Aphid Sitobion avenae on Wheat
Plants Growing in Greenhouse Plots
SO SOUTHWESTERN ENTOMOLOGIST
LA English
DT Article
ID GREENBUGS HOMOPTERA; INDIGENOUS COCCINELLIDS; SORGHUM
AB We investigated predation by adult convergent lady beetle, Hippodamia convergens Guerin-Meneville, on English grain aphid, Sitobion avenae L., on wheat, Triticum aestivum L., growing in 1.8 x 1.8 m plantings in a greenhouse with a soil floor. The wheat was planted to simulate a typical production field, with one seed per 2.5 cm in each row, and rows planted 15.2 cm apart. The plot was artificially infested with aphids. Beetles in one group (designated "light-fed") were provided with 20 English grain aphids of mixed instars per day, whereas beetles in a second group (designated "heavy-fed") were provided with 80 English grain aphids per day for 4-6 days before observation. Beetles were observed foraging in the plot for a period of 12 minutes. For each visit to plants, and for movements of beetles on the soil floor of the plot, the amount of time spent searching and eating were recorded, as were incidents of beetle flight from one location to another in the plot or out of the plot. Air temperature, intensity of solar radiation, height of the wheat plants, and density of the aphids were measured concomitant with foraging observations. The number of aphids eaten in the wheat plots averaged 0.16 per minute. The number of aphids eaten per minute increased as the number of aphids per tiller increased (t = 3.80; df = 1, 46; P = 0.0004). Analysis of covariance applied to predation data from the aphid-infested plots indicated that light-fed beetles ate a significantly greater number of aphids per minute than did heavy-fed beetles (F = 5.35; df = 1, 212; P = 0.02). However, the number of aphids per tiller, the covariable in the analysis, was not significant (F = 1.64; df = 1, 211; P = 0.20), indicating that predation rate was not reldted to aphid density. This observation suggested that the physiological state of the beetles (poorly fed or well fed) was dominant over aphid density in influencing predation rate.
C1 [Elliott, Norman C.; Kieckhefer, Robert W.; Phoofolo, Mpho W.] USDA ARS, Plant Sci Res Lab, Stillwater, OK 74075 USA.
RP Elliott, NC (reprint author), USDA ARS, Plant Sci Res Lab, 1301 N Western Rd, Stillwater, OK 74075 USA.
NR 11
TC 1
Z9 1
U1 1
U2 16
PU SOUTHWESTERN ENTOMOLOGICAL SOC
PI DALLAS
PA 17360 COIT RD, DALLAS, TX 75252-6599 USA
SN 0147-1724
J9 SOUTHWEST ENTOMOL
JI Southw. Entomol.
PD DEC
PY 2012
VL 37
IS 4
BP 467
EP 473
PG 7
WC Entomology
SC Entomology
GA 070VW
UT WOS:000313542600004
ER
PT J
AU Yan, QG
Yu, F
Cai, ZY
Zhang, JL
AF Yan, Qiangu
Yu, Fei
Cai, Zhiyong
Zhang, Jilei
TI Catalytic upgrading nitrogen-riched wood syngas to liquid hydrocarbon
mixture over a Fe-Pd/ZSM-5 catalyst
SO BIOMASS & BIOENERGY
LA English
DT Article
DE Biomass to liquid (BTL) fuels; Gasification; Nitrogen-riched; Catalytic
upgrading; Fe-Pd/ZSM-5 catalyst
ID FISCHER-TROPSCH-SYNTHESIS; HIGHER ALCOHOLS; ZEOLITE; IRON; GAS
AB Biomass like wood chips, switchgrass and other plant residues are first converted to syngas through gasification process using air, oxygen or steam. A downdraft gasifier is performed for syngas production in Mississippi State. The syngas from the gasifier contains up to 49% (vol) N-2. High-level nitrogen-containing (nitrogen can be up to 60%) synthesis gas is converted to liquid hydrocarbon mixture through a one-stage catalytic process with a Fe-Pd/ZSM-5 catalyst. The Fe-Pd/ZSM-5 catalyst shows relatively high activity and selectivity in producing liquid hydrocarbons when running with nitrogen-rich syngas. The CO conversion, hydrocarbon selectivity and hydrocarbon distribution as a function of temperature, pressure, GHSV, composition of the feed, and reaction time are examined. (C) 2012 Elsevier Ltd. All rights reserved.
C1 [Yan, Qiangu; Yu, Fei] Mississippi State Univ, Dept Agr & Biol Engn, Mississippi State, MS 39762 USA.
[Cai, Zhiyong] USDA Forest Serv, Forest Prod Lab, Madison, WI USA.
[Zhang, Jilei] Mississippi State Univ, Dept Forest Prod, Mississippi State, MS 39762 USA.
RP Yan, QG (reprint author), Mississippi State Univ, Dept Agr & Biol Engn, Box 9632, Mississippi State, MS 39762 USA.
EM qy8@ra.msstate.edu; fyu@abe.msstate.edu
OI Yu, Fei/0000-0001-5595-6147
FU U.S. Department of Energy [DE-FG3606GO86025, DE-FC2608NT01923]; US
Department of Agriculture [AB567370MSU]
FX Funding for this work was provided by the U.S. Department of Energy
under Award Number DE-FG3606GO86025, DE-FC2608NT01923, and US Department
of Agriculture under Award number AB567370MSU. The assistance of Ms.
Amanda Lawrence and Mr. Richard F. Kuklinski of the Institute for
Imaging & Analytical Technologies at Mississippi State University
(I2AT) is gratefully acknowledged.
NR 22
TC 5
Z9 5
U1 3
U2 23
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0961-9534
J9 BIOMASS BIOENERG
JI Biomass Bioenerg.
PD DEC
PY 2012
VL 47
BP 469
EP 473
DI 10.1016/j.biombioe.2012.09.001
PG 5
WC Agricultural Engineering; Biotechnology & Applied Microbiology; Energy &
Fuels
SC Agriculture; Biotechnology & Applied Microbiology; Energy & Fuels
GA 078CO
UT WOS:000314075900051
ER
PT J
AU Haavik, LJ
Coleman, TW
Flint, ML
Venette, RC
Seybold, SJ
AF Haavik, Laurel J.
Coleman, Tom W.
Flint, Mary Louise
Venette, Robert C.
Seybold, Steven J.
TI Agrilus auroguttatus exit hole distributions on Quercus agrifolia boles
and a sampling method to estimate their density on individual trees
SO CANADIAN ENTOMOLOGIST
LA English
DT Article
ID GOLDSPOTTED OAK BORER; SCHAEFFER COLEOPTERA BUPRESTIDAE; BRONZE BIRCH
BORER; UNITED-STATES; SOUTHERN CALIFORNIA; COXALIS WATERHOUSE;
CERAMBYCIDAE; POPULATIONS; WASHINGTON; WOODLANDS
AB In recent decades, invasive phloem and wood borers have become important pests in North America. To aid tree sampling and survey efforts for the newly introduced goldspotted oak borer, Agrilus auroguttatus Schaeffer (Coleoptera: Buprestidae), we examined spatial patterns of exit holes on the boles (trunks) of 58 coast live oak, Quercus agrifolia Nee (Fagaceae), trees at five sites in San Diego County, southern California, United States of America. Agrilus auroguttatus exit hole densities were greater at the root collar than at mid-boles (6.1 m above ground). Dispersion patterns of exit holes on lower boles (<= 1.52 m) were random for trees with low exit hole densities and aggregated for trees with high exit hole densities. The mean exit hole density measured from three randomly chosen quadrats (0.09 m(2)) provided a statistically reliable estimate of the true mean exit hole density on the lower bole, with <25% error from the true mean. For future sampling and survey efforts in southern California oak forests and woodlands, exit hole counts within a 0.09 m(2) quadrat could be made at any three locations on lower Q. agrifolia boles to accurately estimate A. auroguttatus exit hole densities at the individual tree level.
C1 [Haavik, Laurel J.; Flint, Mary Louise] Univ Calif Davis, Dept Entomol, Davis, CA 95616 USA.
[Coleman, Tom W.] USDA, US Forest Serv, San Bernardino, CA 92408 USA.
[Venette, Robert C.] USDA, US Forest Serv, No Res Stn, St Paul, MN 55108 USA.
[Seybold, Steven J.] USDA, US Forest Serv, Pacific SW Res Stn, Davis, CA 95616 USA.
RP Haavik, LJ (reprint author), Univ Calif Davis, Dept Entomol, 1 Shields Ave, Davis, CA 95616 USA.
EM ljhaavik@gmail.com
OI Haavik, Laurel/0000-0002-7749-9095
FU Special Technology Development Program from the United States Department
of Agriculture Forest Service, Forest Health Protection, Region 5
[R5-2010-02]; United States Department of Agriculture Forest Service
Northern and Pacific Southwest Research Stations; University of
California, Davis
FX Authors thank Mike Jones (University of California-Davis, Department of
Entomology) and Grayland Walter (United States Department of Agriculture
Forest Service) for field assistance as well as T.J. Kring, J.F. Negron
and two anonymous reviewers for helpful comments on an earlier version
of the manuscript. This work was supported by a Special Technology
Development Program grant (#R5-2010-02) from the United States
Department of Agriculture Forest Service, Forest Health Protection,
Region 5, by the United States Department of Agriculture Forest Service
Northern and Pacific Southwest Research Stations and by the University
of California, Davis.
NR 38
TC 3
Z9 3
U1 2
U2 25
PU CAMBRIDGE UNIV PRESS
PI NEW YORK
PA 32 AVENUE OF THE AMERICAS, NEW YORK, NY 10013-2473 USA
SN 0008-347X
EI 1918-3240
J9 CAN ENTOMOL
JI Can. Entomol.
PD DEC
PY 2012
VL 144
IS 6
BP 767
EP 778
DI 10.4039/tce.2012.68
PG 12
WC Entomology
SC Entomology
GA 081EF
UT WOS:000314299000003
ER
PT J
AU De Lucca, AJ
Carter-Wientjes, C
Williams, KA
Bhatnagar, D
AF De Lucca, A. J.
Carter-Wientjes, C.
Williams, K. A.
Bhatnagar, D.
TI Blue light (470 nm) effectively inhibits bacterial and fungal growth
SO LETTERS IN APPLIED MICROBIOLOGY
LA English
DT Article
DE antibacterial; antifungal; visible blue light
ID ANTIMICROBIAL CHEMOTHERAPY PACT; CANDIDA-ALBICANS; VISIBLE-LIGHT;
NEUROSPORA-CRASSA; IN-VITRO; PHOTOSENSITIZERS; MECHANISM
AB Blue light (470 nm) LED antimicrobial properties were studied alone against bacteria and with or without the food grade photosensitizer, erythrosine (ERY) against filamentous fungi. Leuconostoc mesenteroides (LM), Bacillus atrophaeus (BA) or Pseudomonas aeruginosa (PA) aliquots were exposed on nutrient agar plates to Array 1 (AR1, 0.2 mW cm(-2)) or Array 2 (AR2, 80 mW cm(-2)), which emitted impure or pure blue light (0-300 J cm(-2)), respectively. Inoculated control (room light only) plates were incubated (48 h) and colonies enumerated. The antifungal properties of blue light combined with ERY (11.4 and 22.8 mu mol l(-1)) on Penicillium digitatum (PD) and Fusarium graminearum (FG) conidia were determined. Conidial controls consisted of: no light, room light-treated conidia and ERY plus room light. Light-treated (ERY + blue light) conidial samples were exposed only to AR2 (0-100 J cm(-2)), aliquots spread on potato dextrose agar plates, incubated (48 h, 30 degrees C) and colonies counted. Blue light alone significantly reduced bacterial and FG viability. Combined with ERY, it significantly reduced PD viability. Blue light is lethal to bacteria and filamentous fungi although effectiveness is dependent on light purity, energy levels and microbial genus.
C1 [De Lucca, A. J.; Carter-Wientjes, C.; Williams, K. A.; Bhatnagar, D.] ARS, So Reg Res Ctr, USDA, New Orleans, LA 70124 USA.
RP De Lucca, AJ (reprint author), ARS, So Reg Res Ctr, USDA, 1100 Robert E Lee Blvd, New Orleans, LA 70124 USA.
EM anthony.delucca@ars.usda.gov
NR 35
TC 5
Z9 5
U1 1
U2 23
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0266-8254
J9 LETT APPL MICROBIOL
JI Lett. Appl. Microbiol.
PD DEC
PY 2012
VL 55
IS 6
BP 460
EP 466
DI 10.1111/lam.12002
PG 7
WC Biotechnology & Applied Microbiology; Microbiology
SC Biotechnology & Applied Microbiology; Microbiology
GA 080EV
UT WOS:000314225000009
PM 23009190
ER
PT J
AU Anderson, RG
Casady, MS
Fee, RA
Vaughan, MM
Deb, D
Fedkenheuer, K
Huffaker, A
Schmelz, EA
Tyler, BM
McDowell, JM
AF Anderson, Ryan G.
Casady, Megan S.
Fee, Rachel A.
Vaughan, Martha M.
Deb, Devdutta
Fedkenheuer, Kevin
Huffaker, Alisa
Schmelz, Eric A.
Tyler, Brett M.
McDowell, John M.
TI Homologous RXLR effectors from Hyaloperonospora arabidopsidis and
Phytophthora sojae suppress immunity in distantly related plants
SO PLANT JOURNAL
LA English
DT Article
DE Arabiopsis thaliana; Hyaloperonospora arabidopsis; Phytophthora sojae;
effector; oomycete; Nicotiana benthamiana; resistance; pathogenesis
ID PROGRAMMED CELL-DEATH; DOWNY MILDEW; DISEASE RESISTANCE; SEQUENCE
POLYMORPHISMS; NICOTIANA-BENTHAMIANA; PATHOGEN INTERACTIONS; MODEL
OOMYCETE; INFESTANS; AVIRULENCE; THALIANA
AB Diverse pathogens secrete effector proteins into plant cells to manipulate host cellular processes. Oomycete pathogens contain large complements of predicted effector genes defined by an RXLR host cell entry motif. The genome of Hyaloperonospora arabidopsidis (Hpa, downy mildew of Arabidopsis) contains at least 134 candidate RXLR effector genes. Only a small subset of these genes is conserved in related oomycetes from the Phytophthora genus. Here, we describe a comparative functional characterization of the Hpa RXLR effector gene HaRxL96 and a homologous gene, PsAvh163, from the Glycine max (soybean) pathogen Phytophthora sojae. HaRxL96 and PsAvh163 are induced during the early stages of infection and carry a functional RXLR motif that is sufficient for protein uptake into plant cells. Both effectors can suppress immune responses in soybean. HaRxL96 suppresses immunity in Nicotiana benthamiana, whereas PsAvh163 induces an HR-like cell death response in Nicotiana that is dependent on RAR1 and Hsp90.1. Transgenic Arabidopsis plants expressing HaRxL96 or PsAvh163 exhibit elevated susceptibility to virulent and avirulent Hpa, as well as decreased callose deposition in response to non-pathogenic Pseudomonas syringae. Both effectors interfere with defense marker gene induction, but do not affect salicylic acid biosynthesis. Together, these experiments demonstrate that evolutionarily conserved effectors from different oomycete species can suppress immunity in plant species that are divergent from the source pathogen's host.
C1 [Anderson, Ryan G.; Casady, Megan S.; Fee, Rachel A.; Deb, Devdutta; Fedkenheuer, Kevin; Tyler, Brett M.; McDowell, John M.] Virginia Tech, Dept Plant Pathol Physiol & Weed Sci, Blacksburg, VA 24061 USA.
[Vaughan, Martha M.; Huffaker, Alisa; Schmelz, Eric A.] ARS, Chem Res Unit, Ctr Med Agr & Vet Entomol, USDA, Gainesville, FL 32608 USA.
[Tyler, Brett M.] Virginia Tech, Virginia Bioinformat Inst, Blacksburg, VA 24061 USA.
RP McDowell, JM (reprint author), Virginia Tech, Dept Plant Pathol Physiol & Weed Sci, Blacksburg, VA 24061 USA.
EM johnmcd@vt.edu
OI Schmelz, Eric/0000-0002-2837-734X; McDowell, John/0000-0002-9070-4874
FU National Science Foundation [IOS-0744875]; US Department of
Agriculture-Agriculture and Food Research Initiative [2009-03008,
2011-68004]
FX We thank Jonathan Jones for pEDV6, Guido van den Ackerveken for INF1,
Brian Staskawicz for N. tabacum seed, Savithiramma Dinesh-Kumar for VIGS
clones, and Shiv Kale and Daolong Dou for Avr4/6 clones and assistance
with bombardment assays. We thank Richard Duong and Dan Deegan for
excellent technical assistance, and the anonymous reviewers for their
constructive comments. This work was supported by grants to J.M.M. and
B. M. T. from the National Science Foundation (IOS-0744875) and the US
Department of Agriculture-Agriculture and Food Research Initiative
(2009-03008 and 2011-68004). The authors have no conflicts of interest
to declare.
NR 75
TC 20
Z9 20
U1 5
U2 46
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0960-7412
J9 PLANT J
JI Plant J.
PD DEC
PY 2012
VL 72
IS 6
BP 882
EP 893
DI 10.1111/j.1365-313X.2012.05079.x
PG 12
WC Plant Sciences
SC Plant Sciences
GA 079PC
UT WOS:000314182000002
PM 22709376
ER
PT J
AU Yobi, A
Wone, BWM
Xu, WX
Alexander, DC
Guo, LN
Ryals, JA
Oliver, MJ
Cushman, JC
AF Yobi, Abou
Wone, Bernard W. M.
Xu, Wenxin
Alexander, Danny C.
Guo, Lining
Ryals, John A.
Oliver, Melvin J.
Cushman, John C.
TI Comparative metabolic profiling between desiccation-sensitive and
desiccation-tolerant species of Selaginella reveals insights into the
resurrection trait
SO PLANT JOURNAL
LA English
DT Article
DE resurrection plants; desiccation tolerance; Selaginella lepidophylla;
Selaginella moellendorffii; metabolome
ID PLANT SPOROBOLUS-STAPFIANUS; ESCHERICHIA-COLI; COMPARATIVE GENOMICS;
PHOSPHATE SYNTHASE; COMPATIBLE SOLUTE; XEROPHYTA-VISCOSA;
MASS-SPECTROMETRY; AQUEOUS-SOLUTIONS; WILD WATERMELON; VASCULAR PLANTS
AB Spike mosses (Selaginellaceae) represent an ancient lineage of vascular plants in which some species have evolved desiccation tolerance (DT). A sister-group contrast to reveal the metabolic basis of DT was conducted between a desiccation-tolerant species, Selaginella lepidophylla, and a desiccation-sensitive species, Selaginella moellendorffii, at 100% relative water content (RWC) and 50% RWC using non-biased, global metabolomics profiling technology, based on GC/MS and UHLC/MS/MS2 platforms. A total of 301 metabolites, including 170 named (56.5%) and 131 (43.5%) unnamed compounds, were characterized across both species. S. lepidophylla retained significantly higher abundances of sucrose, mono-and polysaccharides, and sugar alcohols than did S. moellendorffii. Aromatic amino acids, the well-known osmoprotectant betaine and flavonoids were also more abundant in S. lepidophylla. Notably, levels of c-glutamyl amino acid, linked with glutathione metabolism in the detoxification of reactive oxygen species, and with possible nitrogen remobilization following rehydration, were markedly higher in S. lepidophylla. Markers for lipoxygenase activity were also greater in S. lepidophylla, especially at 50% RWC. S. moellendorffii contained more than twice the number of unnamed compounds, with only a slightly greater abundance than in S. lepidophylla. In contrast, S. lepidophylla contained 14 unnamed compounds of fivefold or greater abundance than in S. moellendorffii, suggesting that these compounds might play critical roles in DT. Overall, S. lepidophylla appears poised to tolerate desiccation in a constitutive manner using a wide range of metabolites with some inducible components, whereas S. moellendorffii mounts only limited metabolic responses to dehydration stress.
C1 [Yobi, Abou; Cushman, John C.] Univ Nevada, Dept Biochem & Mol Biol, Reno, NV 89557 USA.
[Wone, Bernard W. M.] Univ Nevada, Dept Biol Sci, Reno, NV 89557 USA.
[Xu, Wenxin; Alexander, Danny C.; Guo, Lining; Ryals, John A.] Metabolon Inc, Durham, NC 27713 USA.
[Oliver, Melvin J.] Univ Missouri, USDA, ARS, Plant Genet Res Unit, Columbia, MO 65211 USA.
RP Cushman, JC (reprint author), Univ Nevada, Dept Biochem & Mol Biol, Reno, NV 89557 USA.
EM jcushman@unr.edu
FU USDA National Institute of Food and Agriculture [2007-55100-18374];
Nevada Agricultural Experiment Station [NAES-0341]
FX This work was supported, in part, by a grant from the USDA National
Institute of Food and Agriculture to MJO and JCC (grant no.
2007-55100-18374), and by Hatch funding from the Nevada Agricultural
Experiment Station (NAES-0341). The authors would also like to thank
Mary Ann Cushman for her helpful and clarifying comments on the article.
Mention of a trademark or proprietary product does not constitute a
guarantee or warranty of the product by the United States Department of
Agriculture, and does not imply its approval to the exclusion of other
products that may also be suitable. The authors have no conflicts of
interest to declare.
NR 81
TC 31
Z9 34
U1 3
U2 75
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0960-7412
J9 PLANT J
JI Plant J.
PD DEC
PY 2012
VL 72
IS 6
BP 983
EP 999
DI 10.1111/tpj.12008
PG 17
WC Plant Sciences
SC Plant Sciences
GA 079PC
UT WOS:000314182000010
PM 23061970
ER
PT J
AU Zhao, AQ
Zhang, MC
He, ZQ
AF Zhao, Aiqin
Zhang, Mingchu
He, Zhongqi
TI Characteristics of Soil Water-Soluble Organic C and N Under Different
Land Uses in Alaska
SO SOIL SCIENCE
LA English
DT Article
DE Water-soluble organic matter; size fraction; field moist soil sample;
air-drying process; fluorescence excitation/emission matrix;
Humification Index
ID FLUORESCENCE SPECTROSCOPY; CHEMICAL CHARACTERISTICS; MATTER FRACTIONS;
NITROGEN DON; NEW-ZEALAND; CARBON; FOREST; DYNAMICS; BIODEGRADABILITY;
BIOAVAILABILITY
AB Land use conversion induces quantitative change of soil water-soluble organic matter (WSOM), but knowledge of such change is still limited. In this study, field moist and air-dried soils sampled from subarctic Alaska under three land use managements (i.e., forest, agriculture, and grassland converted from agricultural use and under a Conservation Reserve Program [CRP]) were extracted with deionized water and separated by filtration into different size fractions (2.5 mu m, 0.45 mu m, and 1 kDa). Water-soluble organic C (WSOC), water-soluble organic N, and fluorescence spectroscopy of each fraction were determined. There were few differences in quantitative data between samples from different land uses with air-dried samples, implying that air-dried samples were not suitable for characterizing the impact of soil management practices on soil WSOM. For field moist soil samples, the WSOC contents decreased in the order forest > CRP > agricultural land. Furthermore, WSOC was dominated by large (>0.45 mu m) and small (<1 kDa) size molecules in CRP and forest soils, whereas small molecules predominated in agricultural soils. The WSOM of different size fractions and land use displayed three similar fluorophore components (two humic-like and a tyrosine-like), indicating that the impact of land use was mainly on the quantity, rather than on the composition, of WSOM. In conclusion, our data suggested that the long-term agricultural land use could lower the WSOM levels in soils; however, the decreasing trend could be reversed by conversion of agricultural land to grassland under conservation.
C1 [Zhao, Aiqin; Zhang, Mingchu] Univ Alaska Fairbanks, Sch Nat Resources & Agr Sci, Dept High Latitude Agr, Fairbanks, AK 99775 USA.
[He, Zhongqi] USDA ARS, So Reg Res Ctr, New Orleans, LA USA.
RP Zhang, MC (reprint author), Univ Alaska Fairbanks, Fairbanks, AK 99775 USA.
EM mzhang3@alaska.edu
OI He, Zhongqi/0000-0003-3507-5013
NR 49
TC 5
Z9 6
U1 1
U2 41
PU LIPPINCOTT WILLIAMS & WILKINS
PI PHILADELPHIA
PA 530 WALNUT ST, PHILADELPHIA, PA 19106-3621 USA
SN 0038-075X
J9 SOIL SCI
JI Soil Sci.
PD DEC
PY 2012
VL 177
IS 12
BP 683
EP 694
DI 10.1097/SS.0b013e31827e1fa8
PG 12
WC Soil Science
SC Agriculture
GA 080YV
UT WOS:000314281600001
ER
PT J
AU Sacco, RE
McGill, JL
Palmer, MV
Lippolis, JD
Reinhardt, TA
Nonnecke, BJ
AF Sacco, Randy E.
McGill, Jodi L.
Palmer, Mitchell V.
Lippolis, John D.
Reinhardt, Timothy A.
Nonnecke, Brian J.
TI Neonatal Calf Infection with Respiratory Syncytial Virus: Drawing
Parallels to the Disease in Human Infants
SO VIRUSES-BASEL
LA English
DT Review
DE Bovine respiratory syncytial virus; human respiratory syncytial virus;
innate immunity; adaptive immunity; vaccine
ID DELTA T-CELLS; NONSTRUCTURAL PROTEINS NS1; CORYZA AGENT CCA; RSV
F-PROTEIN; VITAMIN-D; G-GLYCOPROTEIN; IMMUNE-RESPONSE; DENDRITIC CELLS;
MATERNAL ANTIBODIES; LYMPHOCYTE SUBSETS
AB Respiratory syncytial virus (RSV) is the most common viral cause of childhood acute lower respiratory tract infections. It is estimated that RSV infections result in more than 100,000 deaths annually worldwide. Bovine RSV is a cause of enzootic pneumonia in young dairy calves and summer pneumonia in nursing beef calves. Furthermore, bovine RSV plays a significant role in bovine respiratory disease complex, the most prevalent cause of morbidity and mortality among feedlot cattle. Infection of calves with bovine RSV shares features in common with RSV infection in children, such as an age-dependent susceptibility. In addition, comparable microscopic lesions consisting of bronchiolar neutrophilic infiltrates, epithelial cell necrosis, and syncytial cell formation are observed. Further, our studies have shown an upregulation of pro-inflammatory mediators in RSV-infected calves, including IL-12p40 and CXCL8 (IL-8). This finding is consistent with increased levels of IL-8 observed in children with RSV bronchiolitis. Since rodents lack IL-8, neonatal calves can be useful for studies of IL-8 regulation in response to RSV infection. We have recently found that vitamin D in milk replacer diets can be manipulated to produce calves differing in circulating 25-hydroxyvitamin D-3. The results to date indicate that although the vitamin D intracrine pathway is activated during RSV infection, pro-inflammatory mediators frequently inhibited by the vitamin D intacrine pathway in vitro are, in fact, upregulated or unaffected in lungs of infected calves. This review will summarize available data that provide parallels between bovine RSV infection in neonatal calves and human RSV in infants.
C1 [Sacco, Randy E.; McGill, Jodi L.; Lippolis, John D.; Reinhardt, Timothy A.; Nonnecke, Brian J.] ARS, Ruminant Dis & Immunol Unit, Natl Anim Dis Ctr, USDA, Ames, IA 50010 USA.
[Palmer, Mitchell V.] ARS, Infect Bacterial Dis Res Unit, Natl Anim Dis Ctr, USDA, Ames, IA USA.
RP Sacco, RE (reprint author), ARS, Ruminant Dis & Immunol Unit, Natl Anim Dis Ctr, USDA, Ames, IA 50010 USA.
EM Randy.Sacco@ars.usda.gov; Jodi.McGill@ars.usda.gov;
Mitchell.Palmer@ars.usda.gov; John.Lippolis@ars.usda.gov;
Tim.Reinhardt@ars.usda.gov; Brian.Nonnecke@ars.usda.gov
RI Reinhardt, Timothy/A-7536-2009
OI Reinhardt, Timothy/0000-0001-5552-2509
NR 140
TC 8
Z9 8
U1 1
U2 23
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1999-4915
J9 VIRUSES-BASEL
JI Viruses-Basel
PD DEC
PY 2012
VL 4
IS 12
BP 3731
EP 3753
DI 10.3390/v4123731
PG 23
WC Virology
SC Virology
GA 082OO
UT WOS:000314401700024
PM 23342375
ER
PT J
AU Kim, DK
Lillehoj, HS
Lee, KW
Jang, SI
Neumann, AP
Siragusa, GR
Lillehoj, EP
Hong, YH
AF Kim, Duk Kyung
Lillehoj, Hyun S.
Lee, Kyung Woo
Jang, Seung Ik
Neumann, Anthony P.
Siragusa, Gregory R.
Lillehoj, Erik P.
Hong, Yeong Ho
TI Genome-Wide Differential Gene Expression Profiles in Broiler Chickens
with Gangrenous Dermatitis
SO AVIAN DISEASES
LA English
DT Article
DE gangrenous dermatitis; Clostridium perfringens; Clostridium septicum;
differentially expressed genes; NRF2-mediated oxidative stress pathway;
inflammatory response
ID CLOSTRIDIUM SEPTICUM INFECTION; TRANSCRIPTIONAL REGULATION;
MONOCLONAL-ANTIBODIES; CYTOKINE RESPONSES; COMMERCIAL TURKEYS; HEME
OXYGENASE-1; GAS-GANGRENE; ALPHA-TOXIN; CELL-GROWTH; TNF-ALPHA
AB Gangrenous dermatitis (GD) is a disease of poultry characterized by necrosis of the skin and severe cellulitis of the subcutaneous tissues caused by infection with Clostridium septicum (CS) and/or Clostridium perfringens (CP) type A. While GD causes significant morbidity, mortality, and economic loss to the poultry industry, the fundamental mechanisms underlying this host-pathogen interaction are relatively unknown. This study used comparative global gene expression microarray analysis of GD-affected and clinically healthy chickens from a recent GD outbreak to glean insights into the molecular and cellular changes associated with this disease process. Histopathologic and immunohistochemical analyses confirmed extensive muscle damage and prominent leukocyte infiltration in the skin of GD-affected birds but not in healthy controls. The levels of mRNAs in the skin and underlying muscle corresponding to 952 microarray elements were altered in GD-afflicted birds compared with healthy controls, with 468 being increased and 484 decreased. From these, a subset of 386 genes was identified and used for biologic function and pathway analyses. The biologic functions that were most significantly associated with the differentially expressed genes were "inflammatory response" and "cellular growth and proliferation" classified under the categories of "disease and disorders" and "molecular and cellular functions," respectively. The biologic pathway that was most significantly associated with the differentially expressed genes was the nuclear factor-erythroid 2-related factor 2 (NRF2)-mediated oxidative stress pathway. Finally, in vitro infection of chicken macrophages with CS or CP modified the levels of mRNAs encoding interferon (IFN)-alpha, IFN-gamma, interleukin (IL)-1 beta, IL-6, IL-12p40, tumor necrosis factor superfamily 15 (downregulated), IL-8, and IL-10 (upregulated), thus confirming the suppressive effect of GD on the chicken immune system.
C1 [Kim, Duk Kyung; Lillehoj, Hyun S.; Lee, Kyung Woo; Jang, Seung Ik] USDA ARS, Anim Parasit Dis Lab, Anim & Nat Resources Inst, Beltsville Agr Res Ctr E, Beltsville, MD 20705 USA.
[Neumann, Anthony P.; Siragusa, Gregory R.] Danisco Agtech Prod Inc, Waukesha, WI 53186 USA.
[Lillehoj, Erik P.] Univ Maryland, Sch Med, Dept Pediat, Baltimore, MD 21201 USA.
[Hong, Yeong Ho] Chung Ang Univ, Dept Anim Sci & Technol, Anseong 456756, South Korea.
RP Lillehoj, HS (reprint author), USDA ARS, Anim Parasit Dis Lab, Anim & Nat Resources Inst, Beltsville Agr Res Ctr E, Bldg 1043, Beltsville, MD 20705 USA.
EM Hyun.Lillehoj@ars.usda.gov
OI Lee, Kyung-Woo/0000-0002-3533-7979
NR 64
TC 3
Z9 4
U1 1
U2 11
PU AMER ASSOC AVIAN PATHOLOGISTS
PI ATHENS
PA 953 COLLEGE STATION RD, ATHENS, GA 30602-4875 USA
SN 0005-2086
J9 AVIAN DIS
JI Avian Dis.
PD DEC
PY 2012
VL 56
IS 4
BP 670
EP 679
PG 10
WC Veterinary Sciences
SC Veterinary Sciences
GA 065GF
UT WOS:000313135800005
PM 23397837
ER
PT J
AU Lee, S
Brambila, J
AF Lee, Sangmi
Brambila, Julieta
TI A NEW SPECIES OF THE GENUS SINOE (LEPIDOPTERA: GELECHIIDAE: LITINI) FROM
FLORIDA
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE Nearctic; Litini; new species; southern Florida; tomato leaf miner
AB A new species of Gelechiidae, Sinoe capsana sp. nov., is reported from southern Florida, USA. All specimens were recently caught in pheromone traps near tomato fields during an early detection survey for the tomato leafminer, Tuta absoluta (Meyrick), a pest native to South America that does not occur in North America. Sinoe capsana sp. nov. is described and imagos and male genitalia are illustrated.
C1 [Lee, Sangmi] Arizona State Univ, Sch Life Sci, Tempe, AZ 85287 USA.
[Brambila, Julieta] USDA APHIS PPQ, Gainesville, FL 32608 USA.
RP Lee, S (reprint author), Arizona State Univ, Sch Life Sci, Box 874501, Tempe, AZ 85287 USA.
EM microlepi@hotmail.com
FU USDA/APHIS/PPQ
FX We thank Richard L. Brown (Mississippi Entomological Museum) for his
encouragement to investigate the genus Sinoe. We especially thank Andrew
Derksen (Florida Department of Agriculture and Consumer Services
[FDACS], Division of Plant Industry [DPI], Cooperative Agriculture Pest
Survey program [CAPS], Miami, Florida) who set traps for the Tuta
absoluta survey in Florida City and Homestead, Florida, and Leroy Whilby
(FDACS, DPI, CAPS), who coordinated the surveys. We also thank Doug
Restom Gaskill (USDA, APHIS, PPQ); Lane Southerland (FDACS, DPI); and
Barry Kostyk (UF, IFAS, SWFREC) for trapping in Collier, Lee and Manatee
Counties. This survey was run by the Florida CAPS program with funds
from USDA/APHIS/PPQ. The use of trade or corporation names in this
publication is for the information and convenience of the reader and
such use does not constitute an official endorsement.
NR 3
TC 1
Z9 1
U1 0
U2 14
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
EI 1938-5102
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 873
EP 876
PG 4
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600008
ER
PT J
AU Shapiro-Ilan, DI
Mizell, RF
AF Shapiro-Ilan, David I.
Mizell, Russell F., III
TI LABORATORY VIRULENCE OF ENTOMOPATHOGENIC NEMATODES TO TWO ORNAMENTAL
PLANT PESTS, CORYTHUCHA CILIATA (HEMIPTERA: TINGIDAE) AND STETHOBARIS
NEMESIS (COLEOPTERA: CURCULIONIDAE)
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE amaryllis weevil; biological control; Heterorhabditis; Steinernema;
sycamore lace bug
ID STEINERNEMA-CARPOCAPSAE; CODLING MOTH; ALEYRODIDAE; LEPIDOPTERA;
TEMPERATURE; TORTRICIDAE; EFFICACY
AB Ornamental flowers, shrubs and trees are economically important commodities in the US and around the globe. In this study we evaluated the potential of entomopathogenic nematodes to control two important ornamental pests: 1) Corythucha ciliata (Say) (Hemiptera: Tingidae), a native lace bug that attacks the foliage of sycamore trees, and 2) the recently described exotic pest, Stethobaris nemesis (Coleoptera: Curculionidae), a weevil that attacks amaryllis leaves and bulbs. In the laboratory, the virulence of six entomopathogenic nematode strains (comprising five species) was evaluated on sycamore leaf discs for potential to control C. ciliata, and four nematode species were evaluated for control of S. nemesis. Heterorhabditis indica (HOM1) exhibited higher virulence to C. ciliata than H. bacteriophora (Baine and Oswego strains), H. georgiana (Kesha), and Steinernema riobrave (355); S. carpocapsae (All) virulence was not statistically separated from the other nematodes with the exception of H. bacteriophora (Oswego) (which exhibited the lowest virulence). Additionally, among the six nematodes tested, H. indica (HOM1) produced the highest level of infective juveniles in C. ciliata. Steinernema carpocapsae (All) exhibited the highest virulence to control S. nemesis (in well-plates containing soil), yet both S. carpocapsae (All) and S. feltiae (SN) exhibited high virulence after only id post-treatment. The other nematodes tested for S. nemesis suppression, H. bacteriophora (Hb) and H. indica (HOM1), also showed high levels of virulence particularly at 3 d post-treatment. Our results indicate that several entomopathogenic nematodes offer potential for control of C. ciliata and S. nemesis and thus additional research, e.g., field studies, is warranted.
C1 [Shapiro-Ilan, David I.] USDA ARS, SE Fruit & Tree Nut Res Lab, Byron, GA 31008 USA.
[Mizell, Russell F., III] Univ Florida IFAS, N Florida Res & Educ Ctr, Quincy, FL 32351 USA.
RP Shapiro-Ilan, DI (reprint author), USDA ARS, SE Fruit & Tree Nut Res Lab, Byron, GA 31008 USA.
EM David.Shapiro@ars.usda.gov
NR 33
TC 3
Z9 3
U1 2
U2 29
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 922
EP 927
PG 6
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600015
ER
PT J
AU Barrionuevo, MJ
Murua, MG
Goane, L
Meagher, R
Navarro, F
AF Jose Barrionuevo, M.
Gabriela Murua, M.
Goane, Lucia
Meagher, Robert
Navarro, Fernando
TI LIFE TABLE STUDIES OF RACHIPLUSIA NU (GUENEE) AND CHRYSODEIXIS (=
PSEUDOPLUSIA) INCLUDENS (WALKER) (LEPIDOPTERA: NOCTUIDAE) ON ARTIFICIAL
DIET
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE loopers species; soybean pests; life cycle; reproductive and population
parameters
ID SOYBEAN LOOPER LEPIDOPTERA; FOLIAGE; CONSUMPTION; COTTON
AB Rachiplusia nu (Guenee) and Chrysodeixis (= Pseudoplusia) includens (Walker) (Lepidoptera: Noctuidae) are 2 economically important species in soybean in northern Argentina. Life cycle, reproductive and population parameters of R. nu and C. includens reared on artificial diet were determined under controlled environmental conditions. Fecundity increased from d 2 to 3 with values of 67.6 eggs per female for R. nu and 75.7 eggs for C. includens. An average of 79.9% (R. nu) and 74.4% (C. includens) of individuals reached the larval stage and 71.1% (R. nu) and 71.4% (C. includens) of individuals reached the adult stage. The life expectancy (ex) curve showed 4 and 3 periods of mortality. The survivorship curves of the 2 species resembled the theoretical type I. Life table analysis determined that R. nu and C. includens have the potential to quickly increase their populations under controlled rearing conditions. These results provide important information that will be used to improve artificial rearing procedures contributing with biological studies towards to develop management programs of both species.
C1 [Jose Barrionuevo, M.; Navarro, Fernando] Inst Super Entomol Dr Abraham Willink, RA-4000 San Miguel De Tucuman, Argentina.
[Gabriela Murua, M.; Goane, Lucia] Secc Zool Agr, Estn Expt Agroind Obispo Colombres, San Miguel De Tucuman, Argentina.
[Gabriela Murua, M.; Navarro, Fernando] Consejo Nacl Invest Cient & Tecn, RA-1033 Buenos Aires, DF, Argentina.
[Meagher, Robert] Univ Florida, USDA ARS, Ctr Med Agr & Vet Entomol, Gainesville, FL 32611 USA.
RP Murua, MG (reprint author), Secc Zool Agr, Estn Expt Agroind Obispo Colombres, San Miguel De Tucuman, Argentina.
EM gmurua@eeaoc.org.ar
FU Consejo de Investigaciones de la Universidad Nacional de Tucuman (CIUNT)
[G431]; Consejo Nacional de Investigaciones Cientificas y Tecnicas (PIP
CONICET) [0696]; EEAOC
FX We are grateful to Ing. Juan Carlos Morales and Maximiliano Alcocer from
Consultora Rurais SRL (Tucuman, Argentina) for allowing us to use the
laboratories and breeding chambers. We thank E. Willink, T. Vera, G. Van
Nieuwenhove and 3 anonymous reviewers for constructive comments on an
earlier draft of the manuscript. This study was supported in part by
Consejo de Investigaciones de la Universidad Nacional de Tucuman (CIUNT
No G431), Consejo Nacional de Investigaciones Cientificas y Tecnicas
(PIP CONICET No 0696) and EEAOC.
NR 46
TC 8
Z9 10
U1 1
U2 39
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
EI 1938-5102
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 944
EP 951
PG 8
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600019
ER
PT J
AU Tavares, WD
Salgado-Neto, G
Legaspi, JC
Ramalho, FD
Serrao, JE
Zanuncio, JC
AF Tavares, Wagner De Souza
Salgado-Neto, Geraldo
Legaspi, Jesusa Crisostomo
Ramalho, Francisco De Sousa
Serrao, Jose Eduardo
Zanuncio, Jose Cola
TI BIOLOGICAL AND ECOLOGICAL CONSEQUENCES OF DIOLCOGASTER SP (HYMENOPTERA:
BRACONIDAE) PARASITIZING AGARAEA MINUTA (LEPIDOPTERA: ARCTIIDAE) AND THE
EFFECTS ON TWO COSTUS (COSTACEAE) PLANT SPECIES IN BRAZIL
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE Arctiidae; biological control; Costaceae; defoliation; parasitoids
ID SPICATUS; SPIRALIS; MICROGASTRINAE; FRACTION; RHIZOMES; LEAVES; ROSCOE
AB Costus spicatus (Jacq.) Sw. and Costus spiralis (Jacq.) Roscoe var. spiralis (Costaceae) are economically important plants due to their pharmacological and medicinal properties and ornamental value. These plants are natives from the Brazilian Atlantic Rainforest and are fed upon by Agaraea minuta Schaus, 1892 (Lepidoptera: Arctiidae). This study describes the damage done by A. minuta on C. spicatus and C. spiralis and the biological and ecological aspects of parasitism of A. minuta by Diolcogaster sp. (Hymenoptera: Braconidae). Twenty stems of C. spicatus and C. spiralis with 100 last-instar caterpillars of A. minuta, were collected per plant in each of 2 years. The stem heights (F, P > 0.05), leaf lengths (F, P > 0.05), leaf widths (F, P > 0.05) and the number of leaves per stem (F, P > 0.05) of both plant species; number of pupae obtained from caterpillars of A. minuta (F, P > 0.05), adult emergence of this defoliator (F, P > 0.05) and of Diolcogaster sp. (F, P > 0.05) were similar during the 2 study periods. Agaraea minuta fed on C. spicatus and C. spiralis, and Diolcogaster sp. was shown to be a parasitoid suppressor of populations of this defoliator.
C1 [Tavares, Wagner De Souza] Univ Fed Vicosa, Dept Fitotecnia, BR-36570000 Vicosa, MG, Brazil.
[Salgado-Neto, Geraldo] Univ Fed Santa Maria, BR-97105900 Santa Maria, RS, Brazil.
[Legaspi, Jesusa Crisostomo] Florida A&M Univ, CMAVE, Ctr Biol Control, ARS,USDA, Tallahassee, FL 32308 USA.
[Ramalho, Francisco De Sousa] Empresa Brasileira Pesquisa Agr, Ctr Nacl Pesquisa Algodao, Unidade Controle Biol, BR-58107720 Campina Grande, Paraiba, Brazil.
[Serrao, Jose Eduardo] Univ Fed Vicosa, Dept Biol Geral, BR-36570000 Vicosa, MG, Brazil.
[Zanuncio, Jose Cola] Univ Fed Vicosa, Dept Biol Anim, BR-36570000 Vicosa, MG, Brazil.
RP Zanuncio, JC (reprint author), Univ Fed Vicosa, Dept Biol Anim, BR-36570000 Vicosa, MG, Brazil.
EM zanuncio@ufv.br
FU Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq);
Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES);
Fundacao de Amparo a Pesquisa do Estado de Minas Gerais (FAPEMIG)
FX We thank the following people and institutions: Dr. Paulus Johannes
Maria Maas (Wageningen University, Netherlands) for identifying the
variety of Costus spiralis (Costaceae); Boldsystems.org site for
providing the pictures of Agaraea minuta (Lepidoptera: Arctiidae)
adults; "Conselho Nacional de Desenvolvimento Cientifico e Tecnologico
(CNPq)", "Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior
(CAPES)", and "Fundacao de Amparo a Pesquisa do Estado de Minas Gerais
(FAPEMIG)" for financial support; and Asia Science Editing of the
Republic of Ireland for English corrections and editing this manuscript.
NR 18
TC 5
Z9 6
U1 0
U2 12
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 966
EP 970
PG 5
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600022
ER
PT J
AU Herrick, NJ
Mankin, RW
AF Herrick, Nathan J.
Mankin, R. W.
TI ACOUSTICAL DETECTION OF EARLY INSTAR RHYNCHOPHORUS FERRUGINEUS
(COLEOPTERA: CURCULIONIDAE) IN CANARY ISLAND DATE PALM, PHOENIX
CANARIENSIS (ARECALES: ARECACEAE)
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE red palm weevil; invasive species; pest management; Caribbean
ID WEEVIL; MANAGEMENT; PATTERNS; CURACAO; LARVAE
AB The red palm weevil (RPW), Rhynchophorus ferrugineus (Olivier), recently found in Curacao and Aruba, has become an economically significant palm tree pest in many tropical and subtropical regions. By the time a palm infested with RPW displays visible damage, larvae have destroyed much of the trunk internal structure, typically resulting in tree mortality. Acoustic technology may enable pest managers to detect and treat early RPW infestations before tree mortality, and to reduce unwanted importation and/or exportation of infested palms. Experiments were conducted in Aruba to determine the detectability of sounds produced by early instars in open, urban environments and in enclosures with ca. 10 dB acoustical shielding. To distinguish RPW signals from background noise, recordings first were analyzed to identify larval sound impulse bursts, trains of 7-199 impulses, 3-30-ms in duration, where impulses within the train were separated by less than 0.25 s. For a burst to be considered a larval sound, it was specified that a majority of its impulses must have spectra that match mean spectra (profiles) of known larval sound impulses more closely than profiles of background noise or known nontargeted sound sources. Based on these analyses, RPW larval bursts were detected in >80% of palm fronds inoculated with neonates the previous day. There were no significant differences between burst rates in enclosed and open environments, but the shielding provided by the enclosure enabled detection of early instars from greater distances. Thus, there is potential to use acoustic technology to detect early RPW infestation in either minimally shielded or open environments. In addition, because late-instar impulses ranged to higher amplitude and had greater diversity of spectral features than with early instars, it may be possible to identify late-instar infestations based on the amplitudes and the diversity of sound features detected.
C1 [Herrick, Nathan J.] Florida A&M Univ, Ctr Agr & Food Sci, Ctr Biol Control, Tallahassee, FL 32307 USA.
[Mankin, R. W.] ARS, USDA, Ctr Med Agr & Vet Entomol, Gainesville, FL 32608 USA.
RP Herrick, NJ (reprint author), Florida A&M Univ, Ctr Agr & Food Sci, Ctr Biol Control, Tallahassee, FL 32307 USA.
EM nathan.herrick@famu.edu
FU U.S. Farm Bill section [10-8100-1503-CA]; Florida AM University; USDA
Animal and Plant Health Inspection Service, Plant Protection and
Quarantine
FX We thank Fantastic Gardens, Aruba, especially Roy Maduro and Felipe
Montoya-Alvarez, for providing research facilities and for providing
insects and plant materials for these studies. We also thank Everett
Foreman, USDA-ARS-CMAVE, for technical assistance with the acoustical
recordings. This study was supported through the U.S. Farm Bill section
10201 funding through a Cooperative Agreement (10-8100-1503-CA) between
Florida A&M University and USDA Animal and Plant Health Inspection
Service, Plant Protection and Quarantine. The use of trade, firm, or
corporation names in this publication is for the information and
convenience of the reader. Such use does not constitute an official
endorsement or approval by the USDA of any product or service to the
exclusion of others that may be suitable. The USDA is an equal
opportunity provider and employer.
NR 19
TC 5
Z9 6
U1 0
U2 27
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 983
EP 990
PG 8
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600025
ER
PT J
AU Brar, GS
Capinera, JL
Mclean, S
Kendra, PE
Ploetz, RC
Pena, JE
AF Brar, Gurpreet S.
Capinera, John L.
Mclean, Stephen
Kendra, Paul E.
Ploetz, Randy C.
Pena, Jorge E.
TI EFFECT OF TRAP SIZE, TRAP HEIGHT AND AGE OF LURE ON SAMPLING XYLEBORUS
GLABRATUS (COLEOPTERA: CURCULIONIDAE: SCOLYTINAE), AND ITS FLIGHT
PERIODICITY AND SEASONALITY
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE Redbay ambrosia beetle; flight; funnel trap; seasonality; Xyleborus
ID REDBAY AMBROSIA BEETLE; SOUTHEASTERN UNITED-STATES; MULTIPLE-FUNNEL
TRAPS; LAUREL WILT; RAFFAELEA-LAURICOLA; BAITED TRAPS; PHOEBE OIL; 1ST
REPORT; ATTRACTION; LAURACEAE
AB Xyleborus glabratus (Coleoptera: Curculionidae: Scolytinae) is a non-native pest that transmits the causal pathogen of laurel wilt disease to plants belonging to the Lauraceae. To improve the current monitoring and survey techniques of X. glabratus, various trapping and flight behavior studies were conducted in natural areas with host species in Alachua County, Florida. Daylight flight rhythm studied at Austin Cary Memorial Forest twice in Sep 2010 using sticky traps baited with manuka lures showed that X. glabratus flies mostly between 1600 and 1800 h daylight saving time. Flight height of the beetle was determined in a trapping study using ladder-like traps. The largest number of beetles was trapped at heights of 35-100 cm above the ground. Seasonality of X. glabratus was studied in Florida from Mar 2010-Dec 2011. Three peaks of trap catches occurred during Apr 2010, Oct 2010 and Mar 2011. To find the optimal Lindgren funnel trap design for X. glabratus, a study was conducted using 4, 8, 12 and 16 funnels per trap. Funnel traps with 8, 12, 16 funnels per trap captured similar numbers of X. glabratus, but significantly more than with 4 funnels per trap. The effect of aging of manuka lures was studied at 2 different sites in Alachua County, Florida. New manuka lures trapped significantly more X. glabratus than lures aged 2, 4 and 6 wk. Trap color, whether black, white, blue, yellow, red or transparent, had no significant influence on the number of X. glabratus trapped.
C1 [Brar, Gurpreet S.; Capinera, John L.; Mclean, Stephen] Univ Florida, Dept Entomol & Nematol, Gainesville, FL 32611 USA.
[Ploetz, Randy C.; Pena, Jorge E.] Univ Florida, Ctr Trop Res & Educ, Homestead, FL 33031 USA.
[Kendra, Paul E.] USDA ARS, Subtrop Hort Res Stn, Miami, FL 33158 USA.
RP Brar, GS (reprint author), Univ Florida, Dept Entomol & Nematol, Gainesville, FL 32611 USA.
EM gpsbrar@ufl.edu
NR 29
TC 19
Z9 19
U1 2
U2 31
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 1003
EP 1011
PG 9
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600028
ER
PT J
AU Stuhl, C
Sivinski, J
Teal, P
Aluja, M
AF Stuhl, Charles
Sivinski, John
Teal, Peter
Aluja, Martin
TI RESPONSES OF MULTIPLE SPECIES OF TEPHRITID (DIPTERA) FRUIT FLY
PARASITOIDS (HYMENOPTERA: BRACONIDAE: OPIINAE) TO SYMPATRIC AND EXOTIC
FRUIT VOLATILES
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE foraging; biological control; monitoring; Diachasmimorpha;
Doryctobracon; Utetes; Anastrepha
ID DIACHASMIMORPHA-LONGICAUDATA HYMENOPTERA; ASHMEAD HYMENOPTERA; NATURAL
ENEMIES; FLIES DIPTERA; CERATITIS-CAPITATA; BIOLOGICAL-CONTROL; PUPAL
PARASITOIDS; LARVAL-PUPAL; ANASTREPHA; MEXICO
AB Opiine braconid parasitoids of tephritid pests have augmentative biological control potential, but there are no synthetic attractants to monitor their survival and dispersal following release. Adults feed on fruit juices and these could be sources of attractive compounds. While orange juice (Citrus sinensis L.) is nutritious, guava juice (Psidium guajaua L.) is toxic. The behavioral responses to the two juices and the juices' volatiles were examined in two species ancestrally sympatric with guava (Doryctobracon areolatus [Szepligeti] and Utetes anastrephae [Viereck]) and a species exotic to guava's neotropical region of origin (Diachasmimorpha longicaudata [Ashmead]). It was predicted that males of the sympatric species, with an evolutionary opportunity to recognize and avoid guava, would neither feed on nor respond to guava volatiles. Females of the syrnpatric species were predicted to avoid feeding upon guava while responding to volatiles in the context of searching for oviposition sites. Males and females of the exotic species were predicted to feed upon and respond to both guava and orange. Orange was universally fed upon and its volatiles were found to be attractive. None of the males, including the exotic species', occupied guava feeding-stations in no-choice situations, but male U. anastrephae responded to guava volatiles. Against expectations, female D. areolatus occupied guava feeding stations. In general, responses to orange were stronger and more universal than those to guava. The preference differences the various species showed between guava and orange are a step forward in identifying the chemical basis of fruit-attractiveness. They provide 1) further evidence that not all uninfested fruit are equally attractive and 2) a relatively attractive and easily obtainable standard, orange, with which to compare the attractiveness of other fruit in the future.
C1 [Stuhl, Charles; Sivinski, John; Teal, Peter] ARS, USDA, Ctr Med Agr & Vet Entomol, Gainesville, FL 32604 USA.
[Aluja, Martin] Inst Ecol AC, Xalapa 91000, Veracruz, Mexico.
RP Stuhl, C (reprint author), ARS, USDA, Ctr Med Agr & Vet Entomol, 1660-1700 SW 23rd Dr, Gainesville, FL 32604 USA.
EM charles.stuhl@ars.usda.gov
NR 35
TC 1
Z9 1
U1 1
U2 26
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 1031
EP 1039
PG 9
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600032
ER
PT J
AU Carpenter, JE
Hight, SD
AF Carpenter, James E.
Hight, Stephen D.
TI REARING THE OLIGOPHAGOUS CACTOBLASTIS CACTORUM (LEPIDOPTERA: PYRALIDAE)
ON MERIDIC DIETS WITHOUT HOST PLANT MATERIALS
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE Cactoblastis; Opuntia; artificial diet; mass rearing
ID ARTIFICIAL DIET; BODY-SIZE; NORTH-AMERICA; OPUNTIA; TEMPERATURES;
MANAGEMENT; FECUNDITY; IMPACT; MEXICO
AB Cactoblastis cactorum (Berg) (Lepidoptera: Pyralidae), an oligophagous Opuntia spp. herbivore from South America, has been used successfully as a biological control agent for several invasive Opuntia species around the world. However, its unintentional arrival in Florida raised serious concern over its possible effect on native Opuntia biodiversity and Opuntia-based industries. Development of control tactics to mitigate the threat of this invasive pest to North America relied upon a constant supply of all life stages of this insect species. Therefore, 3 strains of C. cactorum were established in a laboratory insectary and trials were initiated to optimize rearing methods using an artificial diet. Because monophagous or oligophagous lepidopterans may be sensitive to the balance of nutrients and/or the presence of specific feeding cues and because different strains of an oligophagous lepidopteran may respond differently to various meridic diets, we compared the development and survival of 3 strains of C. cactorum on several meridic diets without host plant materials. Although C. cactorum is an oligophage within the genus Opuntia, it accepted and developed on several diets containing non-host plant ingredients, yeast, and fish meal. The source and balance of non-host nutrients significantly affected all reproductive parameters of C. cactorum. The best performance of C. cactorum was on diets that contained white kidney beans, brewer's yeast, wheat germ and/or soybeans.
C1 [Carpenter, James E.] ARS, USDA, CPMRU, Tifton, GA 31793 USA.
[Hight, Stephen D.] ARS, USDA, CMAVE Ctr Biol Control, FAMU, Tallahassee, FL 32308 USA.
RP Carpenter, JE (reprint author), ARS, USDA, CPMRU, 2747 Davis Rd, Tifton, GA 31793 USA.
EM Jim.Carpenter@ars.usda.gov
FU USDA-APHIS-PPQ; International Atomic Energy Agency (IAEA)
FX We thank Robert Caldwell, Susan Drawdy, and Colothdian Tate
(USDA-ARS-CPMRU) for their assistance in rearing the insects and
conducting the bioassays, and we thank Nada Carruthers (USDA-APHIS) for
commenting on an earlier draft of this paper. We also thank
USDA-APHIS-PPQ and the International Atomic Energy Agency (IAEA) for
providing funds to conduct the research. Mention of trade names or
commercial products in this publication is solely for the purpose of
providing specific information and does not imply recommendation or
endorsement by the U.S. Department of Agriculture. The U.S. Department
of Agriculture is an equal opportunity provider and employer.
NR 44
TC 5
Z9 5
U1 0
U2 15
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 1132
EP 1141
PG 10
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600044
ER
PT J
AU Varone, L
Acosta, MM
Logarzo, GA
Briano, JA
Hight, SD
Carpenter, JE
AF Varone, Laura
Manteca Acosta, Mariana
Logarzo, Guillermo A.
Briano, Juan A.
Hight, Stephen D.
Carpenter, James E.
TI LABORATORY PERFORMANCE OF CACTOBLASTIS CACTORUM (LEPIDOPTERA: PYRALIDAE)
ON SOUTH AND NORTH AMERICAN OPUNTIA SPECIES OCCURRING IN ARGENTINA
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE cactus moth; prickly pear cactus; Opuntia ficus-indica; insect
performance; host plants
ID BODY-SIZE; OVIPOSITION PREFERENCE; LOCAL ADAPTATION; BERG LEPIDOPTERA;
PLANT DEFENSE; FECUNDITY; INSECTS; HERBIVORE; HEMIPTERA; HISTORY
AB The cactus moth, Cactoblastis cactorum (Berg), is native to South America. Since its unintentional arrival to the United States in 1989 and to Mexican islands in 2006, it has become a serious threat to the diversity of both wild and cultivated species of Opuntia Mill. in North America. The native ecological host range of C. cactorum has not been directly ascertained and host acceptance is unclear. Taxonomic nomenclature of Opuntia spp. has been confusing, contradictory, and rapidly changing, leading to inaccurate conclusions about host plant use by C. cactorum in its native South American range. This study was conducted to better understand the biology and ecology of C. cactorum in Argentina by evaluating, under laboratory conditions, the insects' performance (survivorship, development time, potential fecundity) on 8 Opuntia spp. occurring in Argentina. Feeding trials were conducted on 5 Opuntia spp. native to Argentina and 3 Opuntia spp. native to Mexico. Cactoblastis cactorum larvae failed to feed on 2 native Opuntia spp., and had their greatest performance on the North American O. ficus-indica (L). Mill. and O. robusta H. L. Wendl. ex Pfeiff., and the South American O. arechaualetae Speg. Because the insects for the experiments were originally collected on O. ficus-indica, a reciprocal cross feeding experiment with insects collected on O. megapotamica Arechav. was also conducted to test for a potential host plant-mediated local adaptation effect. Some evidence for host plant adaptation was detected in populations collected on the South American host, O. megapotamica. Local adaptation, as documented here, could have consequences for the invasion process of C. cactorum in North America.
C1 [Varone, Laura; Logarzo, Guillermo A.; Briano, Juan A.] Fdn El Estudio Especies Invasivas, FuEDEI, RA-1686 Buenos Aires, DF, Argentina.
[Manteca Acosta, Mariana] Inst Nacl Med Trop, INMeT, RA-3370 Puerto Iguazu, Misiones, Argentina.
[Carpenter, James E.] ARS, USDA, CPMRU, Tifton, GA 31793 USA.
RP Hight, SD (reprint author), ARS, USDA, CMAVE, FAMU, 6383 Mahan Dr, Tallahassee, FL 32308 USA.
EM stephen.hight@ars.usda.gov
NR 53
TC 4
Z9 5
U1 4
U2 23
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 1163
EP 1173
PG 11
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600047
ER
PT J
AU Nagoshi, RN
Paraiso, O
Brambila, J
Kairo, MT
AF Nagoshi, Rodney N.
Paraiso, Oulimathe
Brambila, Julieta
Kairo, Moses T.
TI ASSESSING THE USEFULNESS OF DNA BARCODING TO IDENTIFY OXYCARENUS
HYALINIPENNIS (HEMIPTERA: OXYCARENIDAE) IN FLORIDA, A POTENTIALLY
INVASIVE PEST OF COTTON
SO FLORIDA ENTOMOLOGIST
LA English
DT Article
DE mitochondrial DNA; Cytochrome-C oxidase subunit I; haplotype; cotton
seed bug; Oxycarenus
ID SEQUENCES; IDENTIFICATION; POLYMORPHISM; HETEROPTERA; LYGAEIDAE;
ARMYWORM; PRIMERS; DIPTERA
AB Invasive insects present an ongoing challenge to the safety of U.S. agriculture. A current threat to the U.S. cotton industry is Oxycarenus hyalinipennis (Costa), commonly known as the cotton seed bug. Populations are found throughout most of the world except for North America, and the southeastern U.S. is believed to provide a favorable environment for its establishment. A major component in efforts to control the spread of invasive pests is the rapid and accurate identification of intercepted specimens. Unfortunately, O. hyalinipennis belongs to an incompletely characterized taxon where the assignment of species identity by simple morphological keys is often problematic. In this study, we assessed the potential of DNA barcoding to facilitate the identification of the cotton seed bug in field-collected specimens.
C1 [Nagoshi, Rodney N.] ARS, Ctr Med Agr & Vet Entomol, USDA, Gainesville, FL 32608 USA.
[Paraiso, Oulimathe; Kairo, Moses T.] Florida A&M Univ, Ctr Biol Control, Tallahassee, FL 32307 USA.
[Brambila, Julieta] USDA APHIS PPQ, Gainesville, FL 32604 USA.
RP Nagoshi, RN (reprint author), ARS, Ctr Med Agr & Vet Entomol, USDA, Gainesville, FL 32608 USA.
EM rodney.nagoshi@ars.usda.gov
NR 33
TC 5
Z9 5
U1 1
U2 12
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 1174
EP 1181
PG 8
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600048
ER
PT J
AU Manton, JL
Hollingsworth, RG
Cabos, RYM
AF Manton, Jessica L.
Hollingsworth, Robert G.
Cabos, Roxana Y. M.
TI POTENTIAL OF STEINERNEMA CARPOCAPSAE (RHABDITIDA: STEINERNEMATIDAE)
AGAINST HYPOTHENEMUS HAMPEI (COLEOPTERA: CURCULIONIDAE) IN HAWAI'I
SO FLORIDA ENTOMOLOGIST
LA English
DT Editorial Material
ID COFFEE BERRY BORER; NEMATODES
C1 [Manton, Jessica L.] Univ Hawaii, Trop Conservat Biol & Environm Sci Program, Hilo, HI 96720 USA.
[Hollingsworth, Robert G.; Cabos, Roxana Y. M.] ARS, US Pacific Basin Agr Res Ctr, USDA, Hilo, HI 96720 USA.
RP Manton, JL (reprint author), Univ Hawaii, Trop Conservat Biol & Environm Sci Program, 200 W Kawili St, Hilo, HI 96720 USA.
EM manton@hawaii.edu
NR 11
TC 2
Z9 3
U1 2
U2 12
PU FLORIDA ENTOMOLOGICAL SOC
PI LUTZ
PA 16125 E LAKE BURRELL DR, LUTZ, FL 33548 USA
SN 0015-4040
J9 FLA ENTOMOL
JI Fla. Entomol.
PD DEC
PY 2012
VL 95
IS 4
BP 1194
EP 1197
PG 4
WC Entomology
SC Entomology
GA 078DD
UT WOS:000314077600052
ER
PT J
AU Waes, JGV
Maddox, J
Rainey, M
Gardner, N
Sachs, A
Voss, K
Riley, RT
AF Waes, J. Gelineau-van
Maddox, J.
Rainey, M.
Gardner, N.
Sachs, A.
Voss, K.
Riley, R. T.
TI Tortillas and toxins: Gene-environment interactions in fumonisin-induced
neural tube defects
SO INTERNATIONAL JOURNAL OF DEVELOPMENTAL NEUROSCIENCE
LA English
DT Meeting Abstract
CT 19th Biennial Meeting of the
International-Society-for-Developmental-Neuroscience (ISDN)
CY JAN 11-14, 2012
CL Mumbai, INDIA
SP Int Soc Dev Neurosci (ISDN)
C1 [Waes, J. Gelineau-van; Maddox, J.; Rainey, M.; Gardner, N.; Sachs, A.] Creighton Univ, Sch Med, Dept Pharmacol, Omaha, NE 68178 USA.
[Voss, K.; Riley, R. T.] USDA ARS, Toxicol & Mycotoxin Res Unit, Athens, GA 30613 USA.
NR 0
TC 0
Z9 0
U1 0
U2 2
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0736-5748
J9 INT J DEV NEUROSCI
JI Int. J. Dev. Neurosci.
PD DEC
PY 2012
VL 30
IS 8
BP 636
EP 636
DI 10.1016/j.ijdevneu.2012.10.094
PG 1
WC Developmental Biology; Neurosciences
SC Developmental Biology; Neurosciences & Neurology
GA 077EE
UT WOS:000314009900044
ER
PT J
AU Boateng, AA
Mullen, CA
Osgood-Jacobs, L
Carlson, P
Macken, N
AF Boateng, Akwasi A.
Mullen, Charles A.
Osgood-Jacobs, Logan
Carlson, Peregrine
Macken, Nelson
TI Mass Balance, Energy, and Exergy Analysis of Bio-Oil Production by Fast
Pyrolysis
SO JOURNAL OF ENERGY RESOURCES TECHNOLOGY-TRANSACTIONS OF THE ASME
LA English
DT Article
DE fast pyrolysis; mass balance; energy; exergy analysis
ID BIOMASS GASIFICATION; LCA; OPTIMIZATION; EFFICIENCY; BIOENERGY; PLANTS;
STRAW
AB Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U.S. Department of Agriculture (USDA). USDA is an equal opportunity provider and employer. Mass, energy, and exergy balances are analyzed for bio-oil production in a bench-scale fast pyrolysis system developed by the USDA's Agricultural Research Service (ARS) for the processing of commodity crops to fuel intermediates. Because mass balance closure is difficult to achieve due, in part, to the system's small size and complexity a linear programming optimization model is developed to improve closure of elemental balances without losing the overall representation of the pyrolysis products. The model results provide an opportunity to analyze true energy and exergy balances for the system. While energy comparisons are based on heating values, exergy flows are computed using statistical relationships and other standard techniques. Comparisons were made for a variety of biomass feedstocks including energy crops and various byproducts of agriculture and bioenergy industry. The mass model allows for proper accounting of sources of mass loss and suggestions for improved system performance. Energy recovery and exergetic efficiency are compared for a variety of pyrolysis product utilization scenarios including use of biochar and noncondensable gases as heat sources. Exergetic efficiencies show high potential for energy utilization when all the pyrolysis product streams can be recycled to recuperate their internal energy. The exergy analysis can be beneficial to developing exergetic life cycle assessments (ELCA) for the fast pyrolysis process as sustainable technology for advanced biofuels production. [DOI:10.1115/1.4007659]
C1 [Boateng, Akwasi A.; Mullen, Charles A.] ARS, Eastern Reg Res Ctr, USDA, Wyndmoor, PA 19038 USA.
[Osgood-Jacobs, Logan; Carlson, Peregrine; Macken, Nelson] Swarthmore Coll, Dept Engn, Swarthmore, PA 19081 USA.
RP Boateng, AA (reprint author), ARS, Eastern Reg Res Ctr, USDA, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM akwasi.boateng@ars.usda.gov
NR 27
TC 5
Z9 6
U1 8
U2 79
PU ASME
PI NEW YORK
PA TWO PARK AVE, NEW YORK, NY 10016-5990 USA
SN 0195-0738
J9 J ENERG RESOUR-ASME
JI J. Energy Resour. Technol.-Trans. ASME
PD DEC
PY 2012
VL 134
IS 4
AR 042001
DI 10.1115/1.4007659
PG 9
WC Energy & Fuels
SC Energy & Fuels
GA 077NM
UT WOS:000314034400009
ER
PT J
AU Minnis, AM
Kennedy, AH
Grenier, DB
Palm, ME
Rossman, AY
AF Minnis, A. M.
Kennedy, A. H.
Grenier, D. B.
Palm, M. E.
Rossman, A. Y.
TI Phylogeny and taxonomic revision of the Planistromellaceae including its
coelomycetous anamorphs: contributions towards a monograph of the genus
Kellermania
SO PERSOONIA
LA English
DT Article
DE Agavaceae; Ascomycota; Asparagaceae; Botryosphaeriaceae;
Botryosphaeriales; coelomycetes; Dothideomycetes; molecular phylogeny;
Planistromellaceae; Septoplaca; taxonomy
ID RIBOSOMAL DNA; GENERA COELOMYCETARUM; YUCCA-BACCATA; MIXED MODELS;
SP-NOV; FUNGI; INFERENCE; TELEOMORPH; YUCCIGENA; SEQUENCES
AB The core species of the family Planistromellaceae are included in the teleomorphic genera Planistroma and Planistromella and the connected anamorphic, coelomycetous genera Alpakesa, Kellermania, and Piptarthron. These genera have been defined primarily on the basis of ascospore septation or number of conidial appendages. Due to a lack of DNA sequence data, phylogenetic placement of these genera within the Dothideomycetes, evaluation of monophyly, and questions about generic boundaries could not be adequately addressed in the past. Isolates of nearly all of the known species in these genera were studied genetically and morphologically. DNA sequence data were generated for the nSSU, ITS, nLSU, and RPB1 markers and analysed phylogenetically. These results placed the Planistromellaceae, herein recognised as a distinct family, in an unresolved position relative to other genera within the order Botryosphaeriales. Species representing the core genera of the Planistromellaceae formed a clade and evaluation of its topology revealed that previous morphology-based definitions of genera resulted in an artificial classification system. Alpakesa, Kellermania, Piptarthron, Planistroma, and Planistromella are herein recognised as belonging to the single genus Kellermania. The following new combinations are proposed: Kellermania crassispora, K. dasylirionis, K. macrospora, K. plurilocularis, and K. unilocularis. Five new species are described, namely K. confusa, K. dasylirionicola, K. micranthae, K. ramaleyae, and K. rostratae. Descriptions of species in vitro and a key to species known from culture are provided.
C1 [Minnis, A. M.] US Forest Serv, Ctr Forest Mycol Res, No Res Stn, Madison, WI 53726 USA.
[Kennedy, A. H.; Grenier, D. B.] USDA APHIS, Natl Identificat Serv, Beltsville, MD 20705 USA.
[Palm, M. E.] USDA APHIS, Natl Identificat Serv, PPQ, PHP,RIPPS, Riverdale, MD 20737 USA.
[Rossman, A. Y.] USDA ARS, Systemat Mycol & Microbiol Lab, Beltsville, MD 20705 USA.
RP Minnis, AM (reprint author), US Forest Serv, Ctr Forest Mycol Res, No Res Stn, 1 Gifford Pinochet Dr, Madison, WI 53726 USA.
EM amminnis@fs.fed.us
NR 62
TC 19
Z9 19
U1 0
U2 4
PU RIJKSHERBARIUM
PI LEIDEN
PA PO BOX 9514, 2300 RA LEIDEN, NETHERLANDS
SN 0031-5850
J9 PERSOONIA
JI Persoonia
PD DEC
PY 2012
VL 29
BP 11
EP 28
DI 10.3767/003158512X658766
PG 18
WC Mycology
SC Mycology
GA 073LQ
UT WOS:000313744900002
PM 23606762
ER
PT J
AU Crous, PW
Shivas, RG
Wingfield, MJ
Summerell, BA
Rossman, AY
Alves, JL
Adams, GC
Barreto, RW
Bell, A
Coutinho, ML
Flory, SL
Gates, G
Grice, KR
Hardy, GES
Kleczewski, NM
Lombard, L
Longa, CMO
Louis-Seize, G
Macedo, F
Mahoney, DP
Maresi, G
Martin-Sanchez, PM
Marvanova, L
Minnis, AM
Morgado, LN
Noordeloos, ME
Phillips, AJL
Quaedvlieg, W
Ryan, PG
Saiz-Jimenez, C
Seifert, KA
Swart, WJ
Tan, YP
Tanney, JB
Thu, PQ
Videira, SIR
Walker, DM
Groenewald, JZ
AF Crous, P. W.
Shivas, R. G.
Wingfield, M. J.
Summerell, B. A.
Rossman, A. Y.
Alves, J. L.
Adams, G. C.
Barreto, R. W.
Bell, A.
Coutinho, M. L.
Flory, S. L.
Gates, G.
Grice, K. R.
Hardy, G. E. St J.
Kleczewski, N. M.
Lombard, L.
Longa, C. M. O.
Louis-Seize, G.
Macedo, F.
Mahoney, D. P.
Maresi, G.
Martin-Sanchez, P. M.
Marvanova, L.
Minnis, A. M.
Morgado, L. N.
Noordeloos, M. E.
Phillips, A. J. L.
Quaedvlieg, W.
Ryan, P. G.
Saiz-Jimenez, C.
Seifert, K. A.
Swart, W. J.
Tan, Y. P.
Tanney, J. B.
Thu, P. Q.
Videira, S. I. R.
Walker, D. M.
Groenewald, J. Z.
TI Fungal Planet description sheets: 128-153
SO PERSOONIA
LA English
DT Article
DE ITS DNA barcodes; LSU; novel fungal species; systematics
ID GRASS MICROSTEGIUM-VIMINEUM; LEAF-BLIGHT DISEASE; SOOTY BLOTCH;
BIPOLARIS SP; PHYLOGENY; MYCOSPHAERELLA; GENUS; COCHLIOBOLUS;
MICROFUNGI; EUCALYPTUS
AB Novel species of microfungi described in the present study include the following from Australia: Catenulostroma corymbiae from Corymbia, Devriesia stirlingiae from Stirlingia, Penidiella carpentariae from Carpentaria, Phaeococcomyces eucalypti from Eucalyptus, Phialophora livistonae from Livistona, Phyllosticta aristolochiicola from Aristolochia, Clitopilus austroprunulus on sclerophyll forest litter of Eucalyptus regnans and Toxicocladosporium posoqueriae from Posoqueria. Several species are also described from South Africa, namely: Ceramothyrium podocarpi from Podocarpus, Cercospora chrysanthemoides from Chrysanthemoides, Devriesia shakazului from Aloe, Penidiella drakensbergensis from Protea, Strelitziana cliviae from Clivia and Zasmidium syzygii from Syzygium. Other species include Bipolaris microstegii from Microstegium and Synchaetomella acerina from Acer (USA), Brunneiapiospora austropalmicola from Rhopalostylis (New Zealand), Calonectria pentaseptata from Eucalyptus and Macadamia (Vietnam), Ceramothyrium melastoma from Melastoma (Indonesia), Collembolispora aristata from stream foam (Czech Republic), Devriesia imbrexigena from glazed decorative tiles (Portugal), Microcyclospora rhoicola from Rhus (Canada), Seiridium phylicae from Phylica (Tristan de Cunha, Inaccessible Island), Passalora lobeliae-fistulosis from Lobelia (Brazil) and Zymoseptoria verkleyi from Poa (The Netherlands). Valsalnicola represents a new ascomycete genus from Alnus (Austria) and Parapenidiella a new hyphomycete genus from Eucalyptus (Australia). Morphological and culture characteristics along with ITS DNA barcodes are also provided.
C1 [Crous, P. W.; Lombard, L.; Quaedvlieg, W.; Videira, S. I. R.; Groenewald, J. Z.] CBS KNAW Fungal Biodivers Ctr, NL-3584 CT Utrecht, Netherlands.
[Shivas, R. G.; Tan, Y. P.] Biosecur Queensland, Ecosci Precinct, Brisbane, Qld 4001, Australia.
[Wingfield, M. J.] Univ Pretoria, Forestry & Agr Biotechnol Inst, ZA-0002 Pretoria, South Africa.
[Summerell, B. A.] Royal Bot Gardens & Domain Trust, Sydney, NSW 2000, Australia.
[Rossman, A. Y.] ARS, Systemat Mycol & Microbiol Lab, USDA, Beltsville, MD 20705 USA.
[Alves, J. L.; Barreto, R. W.] Univ Fed Vicosa, BR-3657000 Vicosa, MG, Brazil.
[Adams, G. C.] Univ Nebraska, Dept Plant Pathol, Lincoln, NE 68583 USA.
[Coutinho, M. L.; Macedo, F.] Univ Nova Lisboa, REQUIMTE CQFB, P-2829516 Monte De Caparica, Caparica, Portugal.
[Coutinho, M. L.; Macedo, F.] Univ Nova Lisboa, Dept Conservacao & Restauro, Fac Ciencias & Tecnol, P-2829516 Monte De Caparica, Caparica, Portugal.
[Flory, S. L.] Univ Florida, Dept Agron, Gainesville, FL 32611 USA.
[Gates, G.] Univ Tasmania, Sch Plant Sci, Hobart, Tas, Australia.
[Grice, K. R.] Agri Sci Queensland, Mareeba, Qld 4880, Australia.
[Hardy, G. E. St J.] Murdoch Univ, Sch Biol Sci & Biotechnol, Murdoch, WA 6150, Australia.
[Kleczewski, N. M.] Purdue Univ, Dept Bot & Plant Pathol, SW Purdue Agr Program, Vincennes, IN 47591 USA.
[Longa, C. M. O.] FEM IASMA Res & Innovat Ctr, Sustainable Agroecosyst & Bioresources Dept, I-38010 San Michele All Adige, TN, Italy.
[Louis-Seize, G.; Seifert, K. A.; Tanney, J. B.] Agr & Agri Food Canada, Biodivers Mycol & Bot, Ottawa, ON K1A 0C6, Canada.
[Maresi, G.; Saiz-Jimenez, C.] IASMA Ctr Technol Transfer, I-38010 San Michele All Adige, TN, Italy.
[Martin-Sanchez, P. M.; Saiz-Jimenez, C.] IRNAS CSIC, Inst Recursos Nat & Agrobiol, Seville 41012, Spain.
[Marvanova, L.] Masaryk Univ, Fac Sci, Inst Expt Biol, Czech Collect Microorganisms, Brno 60200, Czech Republic.
[Minnis, A. M.] US Forest Serv, Ctr Forest Mycol Res, No Res Stn, USDA, Madison, WI 53726 USA.
[Morgado, L. N.; Noordeloos, M. E.] Leiden Univ, Natl Herbarium Netherlands, Nat Biodivers Ctr, NL-2300 RA Leiden, Netherlands.
[Phillips, A. J. L.] Univ Nova Lisboa, CREM, Dept Ciencias Vida, Fac Ciencias & Tecnol, P-2829516 Monte De Caparica, Caparica, Portugal.
[Ryan, P. G.] Univ Cape Town, Percy Fitzpatrick Inst African Ornithol, ZA-7701 Rondebosch, South Africa.
[Swart, W. J.] Univ Orange Free State, Dept Plant Pathol, ZA-9300 Bloemfontein, South Africa.
[Thu, P. Q.] Forest Sci Inst Vietnam, Hanoi, Vietnam.
[Walker, D. M.] Univ Findlay, Dept Nat Sci, Findlay, OH 45840 USA.
RP Crous, PW (reprint author), CBS KNAW Fungal Biodivers Ctr, NL-3508 AD Utrecht, Netherlands.
EM p.crous@cbs.knaw.nl; roger.shivas@daff.qld.gov.au;
mike.wingfield@fabi.up.ac.za; Brett.Summerell@rbgsyd.nsw.gov.au;
Amy.Rossman@ars.usda.gov; gadams3@unl.edu; rbarreto@ufv.br;
AskUs@xtra.co.nz; mathildal@gmail.com; flory@ufl.edu;
Genevieve.Gates@utas.edu.au; kathy.grice@daff.qld.gov.au;
g.hardy@murdoch.edu.au; nkleczew@purdue.edu; l.lombard@cbs.knaw.nl;
claudia.longa@fmach.it; louis16g@agr.gc.ca; giorgio.maresi@fmach.it;
pmartin@irnase.csic.es; ludmila@sci.muni.cz; amminnis@fs.fed.us;
luis.morgado@naturalis.nl; chiel.noordeloos@naturalis.nl;
alp@fct.unl.pt; w.quaedvlieg@cbs.knaw.nl; pryan31@gmail.com;
saiz@irnase.csic.es; keith.seifert@agr.gc.ca; Swartwj@ufs.ac.za;
yupei.tan@daff.qld.gov.au; Joey.Tanney@agr.gc.ca; vkhln@vista.gov.vn;
s.videira@cbs.knaw.nl; walkerd@findlay.edu; e.groenewald@cbs.knaw.nl
RI Martin-Sanchez, Pedro/A-8021-2016; SAIZ-JIMENEZ, CESAREO/I-8885-2012;
Lombard, Lorenzo/B-2042-2010; Groenewald, Johannes/F-4667-2011;
REQUIMTE, UCIBIO/N-9846-2013; Wingfield, Michael/A-9473-2008; Crous,
Pedro/H-1489-2012; Videira, Sandra/C-8593-2013; Quaedvlieg,
William/C-9449-2013; Phillips, Alan/C-6102-2011; Caparica,
cqfb_staff/H-2611-2013; REQUIMTE, AL/H-9106-2013; Hardy, Giles
/B-2432-2013; Chaves, Pedro/K-1288-2013; REQUIMTE, MM/M-6160-2013
OI Martin-Sanchez, Pedro/0000-0003-2674-8650; SAIZ-JIMENEZ,
CESAREO/0000-0003-0036-670X; Ryan, Peter/0000-0002-3356-2056; Lombard,
Lorenzo/0000-0002-5942-5375; Crous, Pedro/0000-0001-9085-8825; Videira,
Sandra/0000-0002-4632-0777; Phillips, Alan/0000-0001-6367-9784; Hardy,
Giles /0000-0001-7419-5064;
FU Fundacao para a Ciencia e a Tecnologia, Portugal [SFRH/BD/46038/2008,
PEst-OE/BIA/UI0457/2011]; Ministry of Education, Youth and Sports, Czech
Republic [MSM 0021622416]
FX We thank the technical staff, A. van Iperen (cultures), M. Vermaas
(photographic plates), and M. Starink-Willemse (DNA isolation,
amplification and sequencing) for their invaluable assistance. Sincere
thanks to Dr Barry Sneddon and Dr Patrick Brownsey for their help in
confirming the host substrate (FP 130), and to Kerie McCombe and Andrew
Millar for some of the photographs used. Kathie Hodge, Rebecca Bennett
and D.H. DeFoe are thanked for collecting some of the specimens studied
here (FP 150). The South African National Antarctic Programme is thanked
for logistic support and Tristan da Cunha's Conservation Department for
permission to collect samples (FP 147). Fundacao para a Ciencia e a
Tecnologia, Portugal is thanked for grant SFRH/BD/46038/2008 (M.
Couthinho) and PEst-OE/BIA/UI0457/2011 (A.J.L. Phillips). The
contribution of L. Marvanova is part of the project MSM 0021622416 of
the Ministry of Education, Youth and Sports, Czech Republic.
NR 77
TC 21
Z9 21
U1 0
U2 29
PU RIJKSHERBARIUM
PI LEIDEN
PA PO BOX 9514, 2300 RA LEIDEN, NETHERLANDS
SN 0031-5850
J9 PERSOONIA
JI Persoonia
PD DEC
PY 2012
VL 29
BP 146
EP 201
DI 10.3767/003158512X661589
PG 56
WC Mycology
SC Mycology
GA 073LQ
UT WOS:000313744900011
PM 23606771
ER
PT J
AU Ren, MZ
Venglat, P
Qiu, SQ
Feng, L
Cao, YG
Wang, E
Xiang, DQ
Wang, JH
Alexander, D
Chalivendra, S
Logan, D
Mattoo, A
Selvaraj, G
Datla, R
AF Ren, Maozhi
Venglat, Prakash
Qiu, Shuqing
Feng, Li
Cao, Yongguo
Wang, Edwin
Xiang, Daoquan
Wang, Jinghe
Alexander, Danny
Chalivendra, Subbaiah
Logan, David
Mattoo, Autar
Selvaraj, Gopalan
Datla, Raju
TI Target of Rapamycin Signaling Regulates Metabolism, Growth, and Life
Span in Arabidopsis
SO PLANT CELL
LA English
DT Article
ID PROTEIN S6 PHOSPHORYLATION; MESSENGER-RNA TRANSLATION; AMINO-ACID
BIOSYNTHESIS; CELL-WALLS; TRANSCRIPTION FACTOR; INDUCED SENESCENCE;
STRESS RESISTANCE; CROP IMPROVEMENT; LEAF SENESCENCE; GENE-EXPRESSION
AB Target of Rapamycin (TOR) is a major nutrition and energy sensor that regulates growth and life span in yeast and animals. In plants, growth and life span are intertwined not only with nutrient acquisition from the soil and nutrition generation via photosynthesis but also with their unique modes of development and differentiation. How TOR functions in these processes has not yet been determined. To gain further insights, rapamycin-sensitive transgenic Arabidopsis thaliana lines (BP12) expressing yeast FK506 Binding Protein12 were developed. Inhibition of TOR in BP12 plants by rapamycin resulted in slower overall root, leaf, and shoot growth and development leading to poor nutrient uptake and light energy utilization. Experimental limitation of nutrient availability and light energy supply in wild-type Arabidopsis produced phenotypes observed with TOR knockdown plants, indicating a link between TOR signaling and nutrition/light energy status. Genetic and physiological studies together with RNA sequencing and metabolite analysis of TOR-suppressed lines revealed that TOR regulates development and life span in Arabidopsis by restructuring cell growth, carbon and nitrogen metabolism, gene expression, and rRNA and protein synthesis. Gain-and loss-of-function Ribosomal Protein S6 (RPS6) mutants additionally show that TOR function involves RPS6-mediated nutrition and light-dependent growth and life span in Arabidopsis.
C1 [Ren, Maozhi; Venglat, Prakash; Qiu, Shuqing; Feng, Li; Cao, Yongguo; Xiang, Daoquan; Wang, Jinghe; Selvaraj, Gopalan; Datla, Raju] Natl Res Council Canada, Inst Plant Biotechnol, Saskatoon, SK S7N 0W9, Canada.
[Wang, Edwin] Natl Res Council Canada, Biotechnol Res Inst, Computat Chem & Bioinformat Grp, Montreal, PQ H4P 2R2, Canada.
[Alexander, Danny] Metabolon, Durham, NC 27713 USA.
[Chalivendra, Subbaiah] Valent BioSci Corp, Long Grove, IL 60047 USA.
[Logan, David] LUNAM Univ, SFR QUASAV 4207, Univ Angers, Inst Rech Hort & Semences, Angers 1, France.
[Mattoo, Autar] ARS, Sustainable Agr Syst Lab, USDA, Beltsville Agr Res Ctr, Beltsville, MD 20705 USA.
RP Datla, R (reprint author), Natl Res Council Canada, Inst Plant Biotechnol, 110 Gymnasium Rd, Saskatoon, SK S7N 0W9, Canada.
EM raju.datla@nrc-cnrc.gc.ca
OI Logan, David/0000-0002-8980-240X
FU National Research Council of Canada Genomics and Health Initiative;
Genome Canada; Genome Prairie
FX This work was supported by the National Research Council of Canada
Genomics and Health Initiative, Genome Canada, and Genome Prairie. We
thank Paul Arnison, Faouzi Bekkaoui, and Adrian Cutler for critical
reading and comments on the article. This is National Research Council
of Canada publication number 50192. Mention of trade names or commercial
products in this publication is solely for the purpose of providing
specific information and does not imply recommendation or endorsement by
the USDA.
NR 99
TC 46
Z9 47
U1 3
U2 57
PU AMER SOC PLANT BIOLOGISTS
PI ROCKVILLE
PA 15501 MONONA DRIVE, ROCKVILLE, MD 20855 USA
SN 1040-4651
EI 1532-298X
J9 PLANT CELL
JI Plant Cell
PD DEC
PY 2012
VL 24
IS 12
BP 4850
EP 4874
DI 10.1105/tpc.112.107144
PG 25
WC Biochemistry & Molecular Biology; Plant Sciences; Cell Biology
SC Biochemistry & Molecular Biology; Plant Sciences; Cell Biology
GA 077XQ
UT WOS:000314063100008
PM 23275579
ER
PT J
AU Wilson, RR
Gilbert-Norton, L
Gese, EM
AF Wilson, Ryan R.
Gilbert-Norton, Lynne
Gese, Eric M.
TI Beyond use versus availability: behaviour-explicit resource selection
SO WILDLIFE BIOLOGY
LA English
DT Article
DE behaviour; coyote; resource selection; study design; use-availability
ID GREATER SAGE-GROUSE; HABITAT SELECTION; EXTRINSIC FACTORS; COYOTE
PREDATION; CERVUS-ELAPHUS; PREFERENCE; MOVEMENT; WILDLIFE; MODELS;
YELLOWSTONE
AB Resource selection studies are common in the wildlife ecology literature and typically rely on the comparison of locations used by wildlife and locations assumed to be available for use but where use was not observed. While standard use-availability designs are helpful for establishing general patterns of species occurrence, they are limited in their ability to help researchers understand the underlying behavioural mechanisms that lead to observed space-use patterns. Based on spatially-explicit behavioural observations from coyotes Canis latrans in Yellowstone National Park, Wyoming, we estimated resource selection for specific behaviours (i.e. predatory, laying and travelling) and for all used locations irrespective of behaviour, to test whether resource selection is behaviour-specific and not generalizable across behaviours. Behaviour-specific models differed significantly from the model not partitioned by behaviour. In particular, the predatory model identified selection for mesic-meadows which have previously been documented to have high small-mammal abundance. The non-partitioned model, however, showed avoidance of this vegetation type. Our results show that resource selection differs between behaviours and suggest that standard techniques for estimation of resource selection might be of limited use for understanding the underlying behavioural mechanisms of space use. Future research should continue to improve on methods for partitioning fine-scale movement data obtained from telemetry collars into discrete movement bouts representative of different behaviours.
C1 [Wilson, Ryan R.] Wilderness Soc, Anchorage, AK 99501 USA.
[Gese, Eric M.] Utah State Univ, Dept Wildland Resources, Natl Wildlife Res Ctr, USDA Wildlife Serv, Logan, UT 84322 USA.
RP Wilson, RR (reprint author), Wilderness Soc, 705 Christensen Dr, Anchorage, AK 99501 USA.
EM ryan_wilson@tws.org; lgilbertnorton@gmail.com; eric.gese@usu.edu
RI Gese, Eric/B-4578-2011
FU USDA-Wildlife Services-National Wildlife Research Center, Logan, Utah;
Berryman Institute; Department of Wildlife Ecology; College of
Agricultural and Life Sciences at the University of Wisconsin-Madison;
National Park Service; Max McGraw Wildlife Foundation; U.S. Fish and
Wildlife Service
FX our study was funded by the USDA-Wildlife Services-National Wildlife
Research Center, Logan, Utah, and the Berryman Institute. We thank P.A.
Terletzky, E.R. Schauster, A.M. Whittaker, A.W. Calio, M.L. Pangraze, L.
Sox, L.P. Yengoyan, D.E. Rozen, S. Grothe, K. Hatier, M.J. Johnson, W.J.
Roach and V. Vergara for field assistance, and J.R. Cary and J. Coleman
for computer programming. Funding and support for field data collected
was provided by the Department of Wildlife Ecology and the College of
Agricultural and Life Sciences at the University of Wisconsin-Madison,
National Park Service, Max McGraw Wildlife Foundation and the U.S. Fish
and Wildlife Service. Lastly we thank the reviewers for providing
valuable comments which greatly improved the manuscript.
NR 36
TC 16
Z9 16
U1 4
U2 61
PU WILDLIFE BIOLOGY
PI RONDE
PA C/O JAN BERTELSEN, GRENAAVEJ 14, KALO, DK-8410 RONDE, DENMARK
SN 0909-6396
J9 WILDLIFE BIOL
JI Wildlife Biol.
PD DEC
PY 2012
VL 18
IS 4
BP 424
EP 430
DI 10.2981/12-044
PG 7
WC Ecology; Zoology
SC Environmental Sciences & Ecology; Zoology
GA 073SD
UT WOS:000313761900009
ER
PT J
AU Ago, M
Jakes, JE
Johansson, LS
Park, S
Rojas, OJ
AF Ago, Mariko
Jakes, Joseph E.
Johansson, Leena-Sisko
Park, Sunkyu
Rojas, Orlando J.
TI Interfacial Properties of Lignin-Based Electrospun Nanofibers and Films
Reinforced with Cellulose Nanocrystals
SO ACS APPLIED MATERIALS & INTERFACES
LA English
DT Article
DE lignin; films; fibers; electrospinning; cellulose nanocrystals; contact
angle; X-ray photoelectron spectroscopy; space-resolved AFM-thermal
transitions
ID ENGINEERING PLASTICS; CARBON-FIBERS; COMPONENTS; SCAFFOLDS; WOOD
AB Sub-100 nm resolution local thermal analysis, X-ray photoelectron spectroscopy (XPS), and water contact angle (WCA) measurements were used to relate surface polymer distribution with the composition of electrospun fiber mats and spin coated films obtained from aqueous dispersions of lignin, polyvinyl alcohol (PVA), and cellulose nanocrystal (CNC). Defect-free lignin/PVA fibers were produced with radii which were observed to increase with lignin concentration and with the addition of CNCs. XPS and WCA results indicate a nonlinear relationship between the surface and the bulk compositions. A threshold around 50 wt % bulk composition was identified in which extensive partitioning of PVA and lignin components occurred on the surface below and above this value. In 75:25 wt % lignin/PVA solvent cast films, phase separated domains were observed. Using nanoscale thermal analyses, the continuous phase was determined to be lignin-rich and the discontinuous phase had a lignin/PVA dispersion. Importantly, the size of the phase separated domains was reduced by the addition of CNCs. When electrospun fiber surfaces were lignin-rich, the addition of CNCs affected their surfaces. In contrast, no surface effects were observed with the addition of CNCs in PVA-rich fibers. Overall, we highlight the importance of molecular interactions and phase separation on the surface properties of fibers from lignin as an abundant raw material for the fabrication of new functional materials.
C1 [Ago, Mariko; Park, Sunkyu; Rojas, Orlando J.] N Carolina State Univ, Dept Forest Biomat, Raleigh, NC 27695 USA.
[Ago, Mariko; Park, Sunkyu; Rojas, Orlando J.] N Carolina State Univ, Dept Chem & Biomol Engn, Raleigh, NC 27695 USA.
[Ago, Mariko] Tokushima Bunri Univ, Fac Sci & Engn, Sanuki, Kagawa, Japan.
[Jakes, Joseph E.] US Forest Serv, USDA, Forest Prod Lab, Madison, WI 53726 USA.
[Johansson, Leena-Sisko; Rojas, Orlando J.] Aalto Univ, Sch Chem Technol, Dept Forest Prod Technol, FI-00076 Espoo, Finland.
RP Ago, M (reprint author), N Carolina State Univ, Dept Forest Biomat, Raleigh, NC 27695 USA.
EM ago@fe.bunri-u.ac.jp; ojrojas@ncsu.edu
RI Rojas, Orlando/O-2890-2014;
OI Rojas, Orlando/0000-0003-4036-4020; Johansson,
Leena-Sisko/0000-0003-0428-8155
FU Asahikasei Fibers Corporation, Japan; Tokushima Bunri University; US
Department of Agriculture [2011-10006-30377]
FX The authors acknowledge financial support of Asahikasei Fibers
Corporation, Japan. Tokushima Bunri University is gratefully
acknowledged for funding M.A. during her international exchange program
with NC State University (O.J.R.). Partial funding support from US
Department of Agriculture under grant number 2011-10006-30377 is highly
appreciated.
NR 28
TC 17
Z9 17
U1 9
U2 139
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1944-8244
J9 ACS APPL MATER INTER
JI ACS Appl. Mater. Interfaces
PD DEC
PY 2012
VL 4
IS 12
BP 6848
EP 6855
DI 10.1021/am302008p
PG 8
WC Nanoscience & Nanotechnology; Materials Science, Multidisciplinary
SC Science & Technology - Other Topics; Materials Science
GA 065LM
UT WOS:000313149800060
PM 23186246
ER
PT J
AU Brito, A
Hertrampf, E
Olivares, M
AF Brito, Alex
Hertrampf, Eva
Olivares, Manuel
TI Low prevalence of anemia in children aged 19 to 72 months in Chile
SO FOOD AND NUTRITION BULLETIN
LA English
DT Article
DE Anemia; Chile; hemoglobin; iron deficiency; iron-deficiency anemia;
preschoolers
ID IRON-DEFICIENCY; INFANTS
AB Background. In 1974/75, the prevalence of anemia in Chilean preschoolers was 18.8%. Since 2000, the Chilean Ministry of Health has combated anemia through the delivery of iron-fortified milk by the National Complementary Feeding Program (NCFP).
Objective. To determine the prevalence of anemia in children aged 19 to 72 months who are beneficiaries of the NCFP.
Methods. A cross-sectional representative sample of 224 beneficiaries of the NCFP aged 19 to 72 months from the Santiago and Valparaiso regions was recruited.
Results. The mean (+/- SD) hemoglobin concentration was 12.3 +/- 1.0 g/dL. Four percent of all children studied were anemic. In simple linear regression analysis, it was observed that hemoglobin concentration was positively correlated with age (r = 0.23, p = .001). There was no association between hemoglobin concentration and duration of breastfeeding (r = -0.12, p = .175). The prevalence of anemia among the 69% of children consuming iron-fortified milk delivered by NCFP was 2.6%, as compared with 7.1% among children not consuming iron-fortified milk (p = 0.227). Consumption of iron-fortified milk did not show a positive signcant relationship with hemoglobin concentration (r = 0.063, p = .529). Similarly, multiple logistic regression did not show an association between consumption of fortified milk and anemia, after adjusting for sex, age, and breastfeeding (p = .150; OR = 0.98; 95% CI, 0.95 to 0.10).
Conclusions. In 2009 anemia was riot a public health problem in Chilean children aged 19 to 72 months from Santiago and Valparaiso.
C1 [Brito, Alex; Hertrampf, Eva; Olivares, Manuel] Univ Chile, Inst Nutr & Food Technol INTA, Micronutrients Lab, Santiago, Chile.
[Brito, Alex] USDA ARS, Western Human Nutr Res Ctr, Davis, CA USA.
RP Brito, A (reprint author), USDA ARS, Western Human Nutr Res Ctr, 430 W Hlth Sci Dr, Davis, CA USA.
EM abrito@ucdavis.edu
RI Olivares, Manuel/I-1876-2013; Brito, Alex/I-2858-2013
OI Olivares, Manuel/0000-0002-1716-7697; Brito, Alex/0000-0002-6212-8814
FU Chilean Ministry of Health
FX We confirm that the manuscript is an original work and has not been
submitted for publication elsewhere. None of the authors have any
potential financial or other conflicts of interest. This study received
financial support from the Chilean Ministry of Health. The corresponding
author states that all authors have read the manuscript and have agreed
to submit it in its current form for consideration for publication in
the Food and Nutrition Bulletin.
NR 13
TC 3
Z9 3
U1 0
U2 1
PU INT NUTRITION FOUNDATION
PI BOSTON
PA 150 HARRISON AVE, BOSTON, MA 02111 USA
SN 0379-5721
J9 FOOD NUTR BULL
JI Food Nutr. Bull.
PD DEC
PY 2012
VL 33
IS 4
BP 308
EP 311
PG 4
WC Food Science & Technology; Nutrition & Dietetics
SC Food Science & Technology; Nutrition & Dietetics
GA 070RO
UT WOS:000313528600011
PM 23424897
ER
PT J
AU Yang, QS
Wu, JH
Li, CY
Wei, YR
Sheng, O
Hu, CH
Kuang, RB
Huang, YH
Peng, XX
McCardle, JA
Chen, W
Yang, Y
Rose, JKC
Zhang, S
Yi, GJ
AF Yang, Qiao-Song
Wu, Jun-Hua
Li, Chun-Yu
Wei, Yue-Rong
Sheng, Ou
Hu, Chun-Hua
Kuang, Rui-Bin
Huang, Yong-Hong
Peng, Xin-Xiang
McCardle, James A.
Chen, Wei
Yang, Yong
Rose, Jocelyn K. C.
Zhang, Sheng
Yi, Gan-Jun
TI Quantitative Proteomic Analysis Reveals that Antioxidation Mechanisms
Contribute to Cold Tolerance in Plantain (Musa paradisiaca L.; ABB
Group) Seedlings
SO MOLECULAR & CELLULAR PROTEOMICS
LA English
DT Article
ID LOW-TEMPERATURE; MASS-SPECTROMETRY; ISOBARIC TAGS; ARABIDOPSIS-THALIANA;
BANANA SEEDLINGS; GENE-EXPRESSION; YEAST PROTEOME; STRESS; ACCLIMATION;
RESPONSES
AB Banana and its close relative, plantain are globally important crops and there is considerable interest in optimizing their cultivation. Plantain has superior cold tolerance compared with banana and a thorough understanding of the molecular mechanisms and responses of plantain to cold stress has great potential value for developing cold tolerant banana cultivars. In this study, we used iTRAQ-based comparative proteomic analysis to investigate the temporal responses of plantain to cold stress. Plantain seedlings were exposed for 0, 6, and 24 h of cold stress at 8 degrees C and subsequently allowed to recover for 24 h at 28 degrees C. A total of 3477 plantain proteins were identified, of which 809 showed differential expression from the three treatments. The majority of differentially expressed proteins were predicted to be involved in oxidation-reduction, including oxylipin biosynthesis, whereas others were associated with photosynthesis, photorespiration, and several primary metabolic processes, such as carbohydrate metabolic process and fatty acid beta-oxidation. Western blot analysis and enzyme activity assays were performed on seven differentially expressed, cold-response candidate plantain proteins to validate the proteomics data. Similar analyses of the seven candidate proteins were performed in cold-sensitive banana to examine possible functional conservation, and to compare the results to equivalent responses between the two species. Consistent results were achieved by Western blot and enzyme activity assays, demonstrating that the quantitative proteomics data collected in this study are reliable. Our results suggest that an increase of antioxidant capacity through adapted ROS scavenging capability, reduced production of ROS, and decreased lipid peroxidation contribute to molecular mechanisms for the increased cold tolerance in plantain. To the best of our knowledge, this is the first report of a global investigation on molecular responses of plantain to cold stress by proteomic analysis. Molecular & Cellular Proteomics 11: 10.1074/mcp.M112.022079, 1853-1869, 2012.
C1 [Yang, Qiao-Song; Li, Chun-Yu; Wei, Yue-Rong; Sheng, Ou; Hu, Chun-Hua; Kuang, Rui-Bin; Huang, Yong-Hong; Yi, Gan-Jun] Guangdong Acad Agr Sci, Inst Fruit Tree Res, Guangzhou 510640, Peoples R China.
[Yang, Qiao-Song; Li, Chun-Yu; Wei, Yue-Rong; Sheng, Ou; Hu, Chun-Hua; Kuang, Rui-Bin; Huang, Yong-Hong; Yi, Gan-Jun] Minist Agr, Key Lab S Subtrop Fruit Biol & Genet Resource Uti, Guangzhou, Guangdong, Peoples R China.
[Wu, Jun-Hua; Peng, Xin-Xiang] S China Agr Univ, State Key Lab Conservat & Utilizat Subtrop Agrobi, Guangzhou, Guangdong, Peoples R China.
[McCardle, James A.; Chen, Wei; Zhang, Sheng] Inst Biotechnol & Life Sci Technol, Ithaca, NY USA.
[Yang, Yong] USDA ARS, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA.
[Rose, Jocelyn K. C.] Cornell Univ, Dept Plant Biol, Ithaca, NY USA.
RP Yi, GJ (reprint author), Guangdong Acad Agr Sci, Inst Fruit Tree Res, Guangzhou 510640, Peoples R China.
EM sz14@cornell.edu; yiganjun@vip.163.com
FU National High-tech R&D Program (863 Program) [2011AA10020602]; National
Natural Science Foundation of China [U1131004]; Guangdong Science and
Technology plan project [2011A020201006]; Dean funding project of
Guangdong Academy of Agricultural Sciences [201113]
FX This work was supported by National High-tech R&D Program (863 Program)
No. 2011AA10020602, National Natural Science Foundation of China No.
U1131004, Guangdong Science and Technology plan project No.
2011A020201006, and Dean funding project of Guangdong Academy of
Agricultural Sciences No. 201113.
NR 65
TC 33
Z9 36
U1 3
U2 64
PU AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3996 USA
SN 1535-9476
J9 MOL CELL PROTEOMICS
JI Mol. Cell. Proteomics
PD DEC
PY 2012
VL 11
IS 12
SI SI
BP 1853
EP 1869
DI 10.1074/mcp.M112.022079
PG 17
WC Biochemical Research Methods
SC Biochemistry & Molecular Biology
GA 071AH
UT WOS:000313557000028
PM 22982374
ER
PT J
AU O'Neil, CE
Keast, DR
Fulgoni, VL
Nicklas, TA
AF O'Neil, Carol E.
Keast, Debra R.
Fulgoni, Victor L., III
Nicklas, Theresa A.
TI Food Sources of Energy and Nutrients among Adults in the US: NHANES
2003-2006
SO NUTRIENTS
LA English
DT Article
DE NHANES; energy intake; nutrients; nutrient intakes adults; food sources
ID NUTRITION EXAMINATION SURVEY; DIET QUALITY; CARDIOVASCULAR-DISEASE;
NATIONAL-HEALTH; CEREAL FIBER; WHITEHALL-II; YOUNG-ADULTS; WHOLE-GRAIN;
BODY-WEIGHT; CONSUMPTION
AB Identification of current food sources of energy and nutrients among US adults is needed to help with public health efforts to implement feasible and appropriate dietary recommendations. To determine the food sources of energy and 26 nutrients consumed by US adults the 2003-2006 National Health and Nutrition Examination Survey (NHANES) 24-h recall (Day 1) dietary intake data from a nationally representative sample of adults 19+ years of age (y) (n = 9490) were analyzed. An updated USDA Dietary Source Nutrient Database was developed for NHANES 2003-2006 using current food composition databases. Food grouping included ingredients from disaggregated mixtures. Mean energy and nutrient intakes from food sources were sample-weighted. Percentages of total dietary intake contributed from food sources were ranked. The highest ranked sources of energy and nutrients among adults more than 19 years old were: energy-yeast bread/rolls (7.2%) and cake/cookies/quick bread/pastry/pie (7.2%); protein-poultry (14.4%) and beef (14.0%); total fat-other fats and oils (9.8%); saturated fatty acids-cheese (16.5%) and beef (9.1%); carbohydrate-soft drinks/soda (11.4%) and yeast breads/rolls (10.9%); dietary fiber-yeast breads/rolls (10.9%) and fruit (10.2%); calcium-milk (22.5%) and cheese (21.6%); vitamin D-milk (45.1%) and fish/shellfish (14.4%); and potassium-milk (9.6%) and coffee/tea/other non-alcoholic beverages (8.4%). Knowledge of primary food sources of energy and nutrients can help health professionals design effective strategies to reduce excess energy consumed by US adults and increase the nutrient adequacy of their diets.
C1 [O'Neil, Carol E.] Louisiana State Univ, Ctr Agr, Sch Human Ecol, Baton Rouge, LA 70803 USA.
[Keast, Debra R.] Food & Nutr Database Res Inc, Okemos, MI 48864 USA.
[Fulgoni, Victor L., III] Nutr Impact LLC, Battle Creek, MI 49014 USA.
[Nicklas, Theresa A.] Baylor Coll Med, ARS, USDA, Childrens Nutr Res Ctr,Dept Pediat, Houston, TX 77030 USA.
RP O'Neil, CE (reprint author), Louisiana State Univ, Ctr Agr, Sch Human Ecol, Baton Rouge, LA 70803 USA.
EM coneil1@lsu.edu; keastdeb@comcast.net; vic3rd@aol.com;
tnicklas@bcm.tmc.edu
FU USDA-Agricultural Research Service [58-6250-6-003]; National Dairy
Council
FX This work is a publication of the United States Department of
Agriculture (USDA/ARS) Children's Nutrition Research Center, Department
of Pediatrics, Baylor College of Medicine, and Houston, Texas. The
contents of this publication do not necessarily reflect the views or
policies of the USDA, nor does mention of trade names, commercial
products, or organizations imply endorsement from the U. S. government.
This research project is supported by the USDA-Agricultural Research
Service through specific cooperative agreement 58-6250-6-003 and the
National Dairy Council administered by the Dairy Research Institute.
NR 57
TC 52
Z9 52
U1 0
U2 41
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 2072-6643
J9 NUTRIENTS
JI Nutrients
PD DEC
PY 2012
VL 4
IS 12
BP 2097
EP 2120
DI 10.3390/nu4122097
PG 24
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA 060KO
UT WOS:000312776900017
PM 23363999
ER
PT J
AU Yoon, GA
Yeum, KJ
Cho, YS
Chen, CYO
Tang, GW
Blumberg, JB
Russell, RM
Yoon, S
Lee-Kim, YC
AF Yoon, Gun-Ae
Yeum, Kyung-Jin
Cho, Yoon-Suk
Chen, C-Y. Oliver
Tang, Guangwen
Blumberg, Jeffrey B.
Russell, Robert M.
Yoon, Sun
Lee-Kim, Yang Cha
TI Carotenoids and total phenolic contents in plant foods commonly consumed
in Korea
SO NUTRITION RESEARCH AND PRACTICE
LA English
DT Review
DE Phytochemicals; carotenoids; total phenolics; plant foods in Korea
ID ANTI PROLIFERATIVE ACTIVITIES; CORONARY-HEART-DISEASE; RANDOMIZED
CONTROLLED-TRIALS; RETINOL EFFICACY TRIAL; GREEN TEA CONSUMPTION;
BETA-CAROTENE; CARDIOVASCULAR-DISEASE; ANTIOXIDANT ACTIVITY;
LUNG-CANCER; VITAMIN-E
AB Phytochemicals are reported to provide various biological functions leading to the promotion of health as well as the reduced risk of chronic diseases. Fat-soluble plant pigments, carotenoids, are extensively studied micronutrient phytochemicals for their potential health benefits. It is noteworthy that specific carotenoids may be responsible for different protective effects against certain diseases. In addition, each carotenoid can be obtained from different types of plant foods. Considering the fact that the phytochemical content in foods can vary according to, but not limited to, the varieties and culture conditions, it is important to establish a database of phytochemicals in locally produced plant foods. Currently, information on individual carotenoid content in plant foods commonly consumed in Korea is lacking. As the first step to support the production and consumption of sustainable local plant foods, carotenoids and total phenolic contents of plant foods commonly consumed in Korea are presented and their potential biological functions are discussed in this review.
C1 [Yoon, Gun-Ae] Dong Eui Univ, Dept Food & Nutr, Coll Human Ecol, Pusan 614714, South Korea.
[Yeum, Kyung-Jin; Chen, C-Y. Oliver; Tang, Guangwen; Blumberg, Jeffrey B.] Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Cho, Yoon-Suk] Florida Coastal Sch Law, Jacksonville, FL USA.
[Russell, Robert M.] NIH, Off Dietary Supplements, Bethesda, MD 20892 USA.
[Yoon, Sun; Lee-Kim, Yang Cha] Yonsei Univ, Dept Food & Nutr, Brain Korea Project 21, Coll Human Ecol, Seoul 120749, South Korea.
RP Yeum, KJ (reprint author), Tufts Univ, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
EM kyungjin.yeum@tufts.edu
FU Rural Development Administration, Republic of Korea [PJ008755]; U.S.
Department of Agriculture [58-1950-7-707]
FX This research has been supported in part by Cooperative Research Program
for Agriculture Science & Technology Development (Project No. PJ008755)
Rural Development Administration, Republic of Korea and U.S. Department
of Agriculture, under Agreement 58-1950-7-707. The contents of this
publication do not necessarily reflect the views or policies of the U.S.
Department of Agriculture, nor does mention of trade names, commercial
products, or organizations imply endorsement by the U.S. Government.
NR 102
TC 3
Z9 5
U1 3
U2 17
PU KOREAN NUTRITION SOC
PI SEOUL
PA 804 KST CTR, 635-4 YEOGSAM-SONG KANGNAM-KU, SEOUL, 135-703, SOUTH KOREA
SN 1976-1457
J9 NUTR RES PRACT
JI Nutr. Res. Pract.
PD DEC
PY 2012
VL 6
IS 6
BP 481
EP 490
DI 10.4162/nrp.2012.6.6.481
PG 10
WC Nutrition & Dietetics
SC Nutrition & Dietetics
GA 069ZF
UT WOS:000313474900001
PM 23346297
ER
PT J
AU Tran, TJ
Elliott, KJ
AF Tran, Tyler J.
Elliott, Katherine J.
TI Estimating Rhododendron maximum L. (Ericaceae) Canopy Cover Using
GPS/GIS Technology
SO CASTANEA
LA English
DT Article
DE Evergreen understory; global positioning system; hardwoods; shrub;
southern Appalachians
ID TREE SEEDLINGS; SPECIES RICHNESS; SOLAR-RADIATION; MOUNTAIN SLOPES;
BASAL AREA; FOREST; VEGETATION; DIVERSITY; SHRUB; DIAMETER
AB In the southern Appalachians, Rhododendron maximum L. (Ericaceae) is a key evergreen understory species, often forming a subcanopy in forest stands. Little is known about the significance of R. maximum cover in relation to other forest structural variables. Only recently have studies used Global Positioning System (GPS) technology as a field-based method to map the perimeter of shrub patches as a means of estimating canopy cover. We assessed the viability of using GPS technology to accurately measure R. maximum canopy cover in mountainous terrain; and we compared canopy cover to other R. maximum abundance variables, forest structural attributes, and environmental factors. We selected forty 20 x 40 m permanent plots at Coweeta Hydrologic Laboratory in western North Carolina to employ a variety of methods (visual estimates, GPS, and x-y coordinate measurements) to estimate canopy cover of R. maximum within each plot. We found a positive relationship between the GPS method and the more accurate x-y coordinate measurements (r = 0.967, p < 0.001). We compared the GPS-derived estimates to other measures of R. maximum abundance and found positive relationships between cover and density (r(2) = 0.800, p < 0.001), basal area (r(2) = 0.747, p < 0.001), total biomass (r(2) = 0.761, p < 0.001), and leaf area index (r(2) = 0.761, p < 0.001). The GPS method is a reliable field-based technology to estimate evergreen canopy cover and it could be used to estimate more difficult to measure parameters of R. maximum, given the significant relationships found in this study.
C1 [Tran, Tyler J.] Univ N Carolina, Chapel Hill, NC 27599 USA.
[Elliott, Katherine J.] US Forest Serv, USDA, So Res Stn, Coweeta Hydrol Lab, Otto, NC 28763 USA.
RP Elliott, KJ (reprint author), US Forest Serv, USDA, So Res Stn, Coweeta Hydrol Lab, Otto, NC 28763 USA.
EM kelliott@fs.fed.us
FU USDA Forest Service, Southern Research Station; NSF [DEB0218001]
FX This study was supported by the USDA Forest Service, Southern Research
Station and by NSF grant DEB0218001 to the Coweeta LTER program at the
University of Georgia. Any opinions, findings, conclusions, or
recommendations expressed in the material are those of the authors and
do not necessarily reflect the views of the National Science Foundation
or the University of Georgia. Special thanks to Patsy Clinton for her
hours of help with data collection and her friendly companionship in the
field. We would like to thank Dr. Gary Wein for his advice on GPS
techniques and Dr. James Costa, Dr. Anya Hinkle, and Michelle Ruigrok
for their helpful comments on an earlier version of this manuscript.
NR 59
TC 0
Z9 0
U1 2
U2 15
PU SOUTHERN APPALACHIAN BOTANICAL SOC, NEWBERRY COLL
PI NEWBERRY
PA DEPT BIOLOGY, C/O CHARLES N HORN, SECRETARY-TREASURER, 2100 COLLEGE ST,
NEWBERRY, SC 29108 USA
SN 0008-7475
J9 CASTANEA
JI Castanea
PD DEC
PY 2012
VL 77
IS 4
BP 303
EP 317
DI 10.2179/12-014
PG 15
WC Plant Sciences
SC Plant Sciences
GA 065MB
UT WOS:000313151300003
ER
PT J
AU Roh, MS
Bauchan, GR
Murphy, C
Bunce, JA
AF Roh, Mark S.
Bauchan, Gary R.
Murphy, Charles
Bunce, James A.
TI The property and effect of bioplastic pots on the growth and
developmental physiology of lily and begonia
SO HORTICULTURE ENVIRONMENT AND BIOTECHNOLOGY
LA English
DT Article
DE biodegradation; chloroplast development; feather fibers; foliar
analysis; growing medium composition; low temperature-scanning electron
microscopy; net photosynthesis; transmission electron microcopy
ID RELEASE NITROGEN-FERTILIZER; BIOBASED PLASTIC RESINS; CHICKEN FEATHER
FIBERS; ORGANIC SOURCES; DEGRADATION; WATER; PHOTOSYNTHESIS;
BIODEGRADATION; TEMPERATURE; SEEDLINGS
AB Three different injection molded bioplastic (BP) pots, BP 29, BP 32, and BP 45 pots, containing processed feather fibers, were evaluated. Growth and flowering of Lilium hybrid 'Triumphator' and Begonia 'Bonfire' were evaluated in new and reused BP pots. Net photosynthesis was measured and macro- and micro-elements were analyzed in 'Triumphator' lily. Ultrastructure of epidermis cells of 'Triumphator' lily were analyzed using a low temperature-scanning electron microscope (LT-SEM). Surface changes, the weight, and macro- and micro-elements of the BP pots were also analyzed. When lilies were grown in BP 32 pots, root and shoot growth were inhibited, flowering was delayed and the net photosynthesis was negative, grana development, and starch granules were not observed as compared to those in BP 45 pots. Changes in the surface of BP 32 pots after forcing lilies (used once) showed a distinct space between feather fibers and other constituents which could be due to the chemical changes resulting from absorption of water. When BP pots were analyzed for pH and macro- and micro-elements, the pH and the concentration of ammonium nitrogen, phosphorus, potassium, calcium, magnesium, sulfur, and iron were significantly higher in the new BP 32 than those of BP 29 and BP 45 pots. Based on the growth and development of lily and begonia and net photosynthesis and grana development of lily, and foliar analysis of begonia grown in three different BP pots, it is concluded that BP 45 is recommended to grow lily and begonia when proper levels of nutrition are maintained during culture. Poor root growth and development of 'Triumphator' lily grown in new BP 32 pots could be associated with leaching of toxic substances once the pots absorb water during the culture.
C1 [Roh, Mark S.] ARS, USDA, USNA, BARC W,Floral & Nursery Plants Res Unit, Beltsville, MD 20705 USA.
[Murphy, Charles] ARS, USDA, BARC W,Soybean Genom & Improvement Lab, Elect & Confocal Microscope Unit, Beltsville, MD 20705 USA.
[Bunce, James A.] ARS, USDA, BARC W, Crop Syst & Global Changes Lab, Beltsville, MD 20705 USA.
RP Roh, MS (reprint author), ARS, USDA, USNA, BARC W,Floral & Nursery Plants Res Unit, B 010A,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM marksroh@gmail.com
NR 21
TC 3
Z9 4
U1 1
U2 20
PU KOREAN SOC HORTICULTURAL SCIENCE
PI SUWON
PA C/O NATL HORTICULTURAL RES INST, IMOK-DONG 475, JANGAN-GU, SUWON,
440-706, SOUTH KOREA
SN 2211-3452
J9 HORTIC ENVIRON BIOTE
JI Hortic. Environ. Biotechnol.
PD DEC
PY 2012
VL 53
IS 6
BP 467
EP 476
DI 10.1007/s13580-012-1311-9
PG 10
WC Horticulture
SC Agriculture
GA 068KP
UT WOS:000313365900005
ER
PT J
AU Lee, AK
Slovin, JP
Suh, JK
AF Lee, Ae Kyung
Slovin, Janet P.
Suh, Jeung Keun
TI Dehydration intolerant seeds of Ardisia species accumulate storage and
stress proteins during development
SO HORTICULTURE ENVIRONMENT AND BIOTECHNOLOGY
LA English
DT Article
DE dehydrin; dehydration tolerant; gel electrophoresis; immunoblot;
oleosin; recalcitrant seed
ID DESICCATION-TOLERANCE MECHANISMS; RECALCITRANT SEEDS; GERMINATION;
PHYSIOLOGY; DEHYDRIN; SENSITIVITY; EXPRESSION
AB Seeds of two commercially marketable small shrubs, Ardisia crenata and Ardisia japonica, do not germinate if they are stored for more than few weeks in conditions where they are allowed to dehydrate, and they are considered as recalcitrant. The berries of these plants remain attached for a long period of time after an approximately 34 weeks period of development. The proteins in the developing seeds, germinating seeds, and seeds stored for various periods of time in moist or dry conditions and at 10A degrees C or 25A degrees C were examined by a polyacrylamide gel electrophoresis and an immunoblot analysis with antibodies to dehydrin and oleosin. Both dehydrin- and oleosin-like proteins were detected in early stages of seed development, as were proteins that are likely to function as seed storage proteins. Storage of seeds in dry conditions induced the expression of both dehydrin- and oleosin-like proteins, but only after an 8 weeks storage period. The levels of these proteins were considerably lower in the less dehydration tolerant A. japonica.
C1 [Lee, Ae Kyung; Suh, Jeung Keun] Dankook Univ, Sch Bioresources Sci, Dept Environm Hort, Cheonan 330714, South Korea.
[Slovin, Janet P.] ARS, Genet Improvement Fruits & Vegetables Lab, USDA, Beltsville, MD 20705 USA.
RP Lee, AK (reprint author), Dankook Univ, Sch Bioresources Sci, Dept Environm Hort, Cheonan 330714, South Korea.
EM akleekr@dankook.ac.kr
FU Dankook University
FX The authors thank the Korea Science and Engineering Foundation and also
the research fund of Dankook University awarded to A. K. Lee in 2011,
and Dr. L. J. Rowland and Dr. E. Herman for supplying antibodies.
Assistance of Dr. Mark S. Roh in greenhouse work is appreciated. Mention
of a trademark, proprietary product, or vendor does not constitute a
guarantee or warranty of the product by the U. S. Department of
Agriculture and does not imply its approval to the exclusion of other
products or vendors that might be suitable.
NR 33
TC 1
Z9 1
U1 1
U2 20
PU KOREAN SOC HORTICULTURAL SCIENCE
PI SUWON
PA C/O NATL HORTICULTURAL RES INST, IMOK-DONG 475, JANGAN-GU, SUWON,
440-706, SOUTH KOREA
SN 2211-3452
J9 HORTIC ENVIRON BIOTE
JI Hortic. Environ. Biotechnol.
PD DEC
PY 2012
VL 53
IS 6
BP 530
EP 538
DI 10.1007/s13580-012-0073-8
PG 9
WC Horticulture
SC Agriculture
GA 068KP
UT WOS:000313365900013
ER
PT J
AU Geiger, M
Gibbons, J
West, T
Hughes, SR
Gibbons, W
AF Geiger, Melanie
Gibbons, Jaimie
West, Thomas
Hughes, Stephen R.
Gibbons, William
TI Evaluation of UV-C Mutagenized Scheffersomyces stipitis Strains for
Ethanol Production
SO JALA
LA English
DT Article
DE Scheffersomyces stipitis; fermentation; xylose; automated mutagenesis
ID XYLOSE-FERMENTING YEAST; PICHIA-STIPITIS; ESCHERICHIA-COLI;
CANDIDA-SHEHATAE; FUEL ETHANOL; NRRL Y-7124; FERMENTATION; CORN;
HYDROLYSATE; CONVERSION
AB We evaluated fermentation capabilities of five strains of Scheffersomyces stipitis (WT-2-1, WT-1-11, 14-2-6, 22-1-1, and 22-1-12) that had been produced by UV-C mutagenesis and selection for improved xylose fermentation to ethanol using an integrated automated robotic work cell. They were incubated under both facultative and anaerobic conditions to evaluate ethanol production on glucose, xylose, cellobiose, and a combination of all three sugars. The medium contained 50 g/L total sugar and 5 g/L yeast extract. The strains performed significantly better under facultative compared with anaerobic conditions. As expected, glucose was the most readily fermented sugar with similar to 100% fermentation efficiency (FE) under facultative conditions but only 5% to 16% FE anaerobically. Xylose utilization was 20% to 40% FE under facultative conditions but 9% to 25% FE anaerobically. Cellobiose was the least fermented sugar, at 18% to 27% FE facultatively and 8% to 11% anaerobically. Similar trends occurred in the sugar mixture. Under facultative conditions, strain 22-1-12 produced 19.6 g/L ethanol on glucose, but strain 14-2-6 performed best on xylose (4.5 g/L ethanol) and the sugar combination (8.0 g/L ethanol). Ethanol titers from glucose under anaerobic conditions were again highest with strain 22-1-12, but none of the strains produced ethanol from xylose. Future trials will evaluate nutrient addition to boost microaerophilic xylose fermentation.
C1 [Gibbons, William] S Dakota State Univ, Biol & Microbiol Dept, Brookings, SD 57007 USA.
[Hughes, Stephen R.] ARS, USDA, Natl Ctr Agr Utilizat Res, RPT, Peoria, IL USA.
RP Gibbons, W (reprint author), S Dakota State Univ, Biol & Microbiol Dept, POB 2204A,SDM 225A, Brookings, SD 57007 USA.
EM William.Gibbons@SDSTATE.EDU
RI West, Thomas/A-5854-2008
OI West, Thomas/0000-0002-9348-4213
FU North Central Regional Sun Grant Center at South Dakota State University
through US Department of Transportation, Office of the Secretary
[DTOS59-07-G-00054]
FX The authors acknowledge the financial support received from the North
Central Regional Sun Grant Center at South Dakota State University
through a grant provided by the US Department of Transportation, Office
of the Secretary, Grant No. DTOS59-07-G-00054.
NR 23
TC 1
Z9 2
U1 0
U2 22
PU SAGE PUBLICATIONS INC
PI THOUSAND OAKS
PA 2455 TELLER RD, THOUSAND OAKS, CA 91320 USA
SN 2211-0682
J9 JALA-J LAB AUTOM
JI JALA
PD DEC
PY 2012
VL 17
IS 6
SI SI
BP 417
EP 424
DI 10.1177/2211068212452873
PG 8
WC Biochemical Research Methods; Chemistry, Analytical
SC Biochemistry & Molecular Biology; Chemistry
GA 068DH
UT WOS:000313344200002
PM 22786982
ER
PT J
AU Lyons, DB
Lavallee, R
Kyei-Poku, G
Van Frankenhuyzen, K
Johny, S
Guertin, C
Francese, JA
Jones, GC
Blais, M
AF Lyons, D. Barry
Lavallee, Robert
Kyei-Poku, George
Van Frankenhuyzen, Kees
Johny, Shajahan
Guertin, Claude
Francese, Joseph A.
Jones, Gene C.
Blais, Martine
TI Towards the Development of an Autocontamination Trap System to Manage
Populations of Emerald Ash Borer (Coleoptera: Buprestidae) With the
Native Entomopathogenic Fungus, Beauveria bassiana
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE Agrilus planipennis; entomopathogenic fungus; ash tree;
autodissemination; invasive insect
ID AGRILUS-PLANIPENNIS COLEOPTERA; CAPTURING CERAMBYCID BEETLES;
POPILLIA-JAPONICA COLEOPTERA; METARHIZIUM-ANISOPLIAE; PANEL TRAPS;
FIELD; AUTODISSEMINATION; SUSCEPTIBILITY; (Z)-3-HEXENOL; SCARABAEIDAE
AB Emerald ash borer, Agrilus planipennis Fairmaire (Coleoptera: Buprestidae) is an invasive species from Asia that was discovered in North America Canada, in 2002. Herein, we describe studies to develop an autocontamination trapping system to disseminate Beauveria bassiana to control beetle populations. The standard trap for emerald ash borer in Canada is a light green prism trap covered in an insect adhesive and baited with (Z)-3-hexenol. We compared of green multifunnel traps, green intercept panel traps (both with and without fluo coating) and green prism traps for capturing emerald ash borer in a green ash plantation. The coated green multifunnel traps captured significantly more males and more females than any other trap design. We examined the efficacy of two native B. bassiana isolates, INRS-CFL and L49D1AA. In a field experiment the INRS-CFL isolate attached to multifunnel traps in autocontamination chambers retained its pathogenicity to emerald ash borer adults for up to 43 d of outdoor exposure. Conidia germination of the INRS-CFL isolate was >69% after outdoor exposure in the traps for up to 57 d. The L49D1AA isolate was not pathogenic in simulated trap exposures and the germination rate was extremely low (<5.3%). Mean (+/- SEM) conidia loads on ash borer adults after being autocontaminated in the laboratory using pouches that had been exposed in traps out of doors for 29 d were 579,200 (+/- 86,181) and 2,400 (+/- 681) for the INRS-CFL and the L49-1AA isolates, respectively. We also examined the fungal dissemination process under field conditions using the L49-1AA isolate in a green ash plantation. Beetles were lured to baited green multifunnel traps with attached autocontamination chambers. Beetles acquired fungal conidia from cultures growing on pouches in the chambers and were recaptured on Pestick-coated traps. In total, 2,532 beetles were captured of which 165 (6.5%) had fungal growth that resembled B. bassiana. Of these 25 beetles were positive for the L49-1AA isolate.
C1 [Lyons, D. Barry; Kyei-Poku, George; Van Frankenhuyzen, Kees; Johny, Shajahan; Jones, Gene C.] Canadian Forest Serv, Nat Resources Canada, Sault Ste Marie, ON P6A 2E5, Canada.
[Lavallee, Robert; Blais, Martine] Canadian Forest Serv, Nat Resources Canada, Ste Foy, PQ G1V 4C7, Canada.
[Guertin, Claude] INRS Inst Armand Frappier, Laval, PQ H7V 1B7, Canada.
[Francese, Joseph A.] USDA, APHIS PPQ, Otis Air Natl Guard Base, Buzzards Bay, MA 02542 USA.
RP Lyons, DB (reprint author), Canadian Forest Serv, Nat Resources Canada, 1219 Queen St E, Sault Ste Marie, ON P6A 2E5, Canada.
EM barry.lyons@NRCan-RNCan.gc.ca
FU Natural Resources Canada; Canadian Forest Service; Ontario Ministry of
Natural Resources; SERG-I research consortium
FX We thank M. Campbell, C. Dietrich, D. Gauthier, Y. Liu, L. Roscoe, T.
Shewchenko, and A. Tonon (NRCan-CFS, Sault Ste. Marie, ON) for technical
assistance in the laboratory and field. We are grateful to P. DeMoor, J.
Griffith, C. Kennedy, and D. Allen for allowing us access to the ash
plantations on their properties. The project was funded by the Forest
Invasive Alien Species Program from Natural Resources Canada, Canadian
Forest Service, the Invasive Species Research Partnership Fund from the
Ontario Ministry of Natural Resources, and the SERG-I research
consortium. Green multi-funnel traps were supplied by the
USDA-APHIS-PPQ, Buzzards Bay, MA.
NR 43
TC 16
Z9 18
U1 0
U2 45
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0022-0493
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD DEC
PY 2012
VL 105
IS 6
BP 1929
EP 1939
DI 10.1603/EC12325
PG 11
WC Entomology
SC Entomology
GA 055VJ
UT WOS:000312445600009
PM 23356056
ER
PT J
AU Follett, PA
Snook, K
AF Follett, Peter A.
Snook, Kirsten
TI Irradiation for Quarantine Control of the Invasive Light Brown Apple
Moth (Lepidoptera: Tortricidae) and a Generic Dose for Tortricid Eggs
and Larvae
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE x-ray radiation; Lepidoptera; invasive species; regulatory pest;
phytosanitary treatment
ID INHERITED STERILITY; PHYTOSANITARY TREATMENT; GAMMA-IRRADIATION;
RADIATION BIOLOGY; DIASPIDIDAE; HOMOPTERA; PYRALIDAE; HAWAII
AB The effects of irradiation on egg, larval, and pupal development, and adult reproduction in light brown apple moth, Epiphyas postvittana (Walker) (Lepidoptera: Tortricidae), were examined. Eggs, neonates, third instars, fifth instars, and early stage pupae were irradiated at target doses of 60, 90, 120, or 150 Gy or left untreated as controls in replicated factorial experiments and survival to the adult stage was recorded. Tolerance to radiation generally increased with increasing age and developmental stage. A radiation dose of 120 Gy applied to eggs and neonates prevented adult emergence. A dose of 150 Gy prevented adult emergence in larvae at all stages. In large-scale validation tests, a radiation dose of 150 Gy applied to fifth instars in diet, apples or peppers resulted in no survival to the adult stage in 37,947 treated individuals. Pupae were more radio tolerant than larvae, and late stage pupae were more tolerant than early stage pupae. Radiation treatment of late pupae at 350 and 400 Gy resulted in three and one fertile eggs in 4,962 and 4,205 total eggs laid by 148 and 289 mating pairs, respectively. For most commodities, the fifth instar is the most radio tolerant life stage likely to occur with the commodity; a minimum radiation dose of 150 Gy will prevent adult emergence from this stage and meets the zero tolerance requirement for market access. For traded commodities such as table grapes that may contain E. postvittana pupae, a radiation dose >400Gy may be necessary to completely sterilize emerging adults. After review of the literature, a generic radiation treatment of 250 Gy is proposed for tortricid eggs and larvae in regulated commodities.
C1 [Follett, Peter A.; Snook, Kirsten] ARS, USDA, US Pacific Basin Agr Res Ctr, Hilo, HI 96720 USA.
RP Follett, PA (reprint author), ARS, USDA, US Pacific Basin Agr Res Ctr, 64 Nowelo St, Hilo, HI 96720 USA.
EM peter.follett@ars.usda.gov
FU USDA Foreign Agricultural Service, Technical Assistance for Specialty
Crops
FX We are grateful to Robert Lower, Steve Brown, Mariko Okamura, Justin
Bisel, Allison Janson, and Takae Nitto (USDA-ARS, Hilo, HI) who
maintained the insect colony and carried out the experiments; Julie
Clapp (USDA-APHIS, Riverdale, MD) for providing information on the
quarantine status of light brown apple moth; John Brown (USDA-SEL,
Beltsville, MD) for identifying moths; and Jim Walker (Plant & Food
Research, Hawkes Bay, New Zealand) for providing information on the
feeding behavior of light brown apple moth in pome fruits. J. Hendrik
Hofmeyr (Citrus Research International, Citrusdal, South Africa)
provided recent information on irradiation of false codling moth. This
research was partially funded by grants from the USDA Foreign
Agricultural Service, Technical Assistance for Specialty Crops program.
USDA is an equal opportunity provider and employer.
NR 42
TC 6
Z9 6
U1 1
U2 11
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0022-0493
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD DEC
PY 2012
VL 105
IS 6
BP 1971
EP 1978
DI 10.1603/EC12114
PG 8
WC Entomology
SC Entomology
GA 055VJ
UT WOS:000312445600013
PM 23356060
ER
PT J
AU Wilson, BE
Showler, AT
Reagan, TE
Beuzelin, JM
AF Wilson, B. E.
Showler, A. T.
Reagan, T. E.
Beuzelin, J. M.
TI Improved Chemical Control for the Mexican Rice Borer (Lepidoptera:
Crambidae) in Sugarcane: Larval Exposure, a Novel Scouting Method, and
Efficacy of a Single Aerial Insecticide Application
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE Eoreuma loftini; novaluron; chemical control; neonate; sugarcane
ID EOREUMA-LOFTINI LEPIDOPTERA; DIATRAEA-SACCHARALIS F; LOUISIANA
SUGARCANE; TEXAS SUGARCANE; PYRALIDAE; MANAGEMENT; RESISTANCE;
NOVALURON; DAMAGE; COLEOPTERA
AB A three-treatment aerial application insecticide experiment was conducted in five commercial sugarcane, Saccharum spp., fields in south Texas to evaluate the use of pheromone traps for improving chemical control of the Mexican rice borer, Eoreuma loftini (Dyar), in 2009 and 2010. A threshold of 20 moths/trap/wk was used to initiate monitoring for larval infestations. The percentage of stalks with larvae on plant surfaces was directly related to the number of moths trapped. Reductions in borer injury and adult emergence were detected when a threshold of >5% of stalks with larvae present on plant surfaces was used to trigger insecticide applications. Novaluron provided superior control compared with beta-cyauthrin; novaluron treated plots were associated with a 14% increase in sugar production. A greenhouse experiment investigating establishment and behavior of E. loftini larvae on two phenological stages of stalkborer resistant, HoCP 85-845, and susceptible, HoCP 00-950, sugarcane cultivars determined that more than half of larvae on HoCP 00-950 and >25% on HoCP 85-845 tunneled inside leaf mid-ribs within 1 d of eclosion, protected therein from biological and chemical control tactics. Exposure time of larvae averaged <1 wk for all treatments and was shortest on immature HoCP 00-950 and longest on mature HoCP 85-845. This study shows a short window of vulnerability of E. loftini larvae to insecticide applications, and demonstrates the potential utility of pheromone traps for improving insecticide intervention timing such that a single properly timed application may be all that is required.
C1 [Wilson, B. E.; Reagan, T. E.; Beuzelin, J. M.] Louisiana State Univ, Dept Entomol, Baton Rouge, LA 70803 USA.
[Showler, A. T.] USDA ARS, Kika de la Garza Subtrop Agr Res Ctr, Weslaco, TX 78596 USA.
RP Wilson, BE (reprint author), Louisiana State Univ, Dept Entomol, 404 Life Sci Bldg,LSU Campus, Baton Rouge, LA 70803 USA.
EM bwilson@agcenter.lsu.edu
FU USDA (National Institute of Food and Agriculture) [2008-51100-04415];
EPA Strategic Agricultural Initiative [0348-0046]; American Sugar Cane
League
FX The authors express appreciation to Jaime Cavazos and Veronica Abrigo
(USDA-ARS Kika de la Garza, Subtropical Agricultural Research Center,
Weslaco, TX), Sebe Brown (LSU AgCenter, Baton Rouge, LA), and Waseem
Akbar (formerly LSU AgCenter) for technical assistance. Additional
thanks are expressed to Jim Trolinger, Tony Prado, and Rio Grande Valley
Sugar Growers Inc. for continuous support and collection of yield and
quality data. We also thank commercial sugarcane growers with S.R.S.
farms and HarVest for their cooperation. Appreciation is expressed to
Jeff Flynn of Certis U.S.A. for providing sugarcane cultivars. Gratitude
is expressed to David Blouin (LSU AgCenter) for statistical consulting.
This work was supported in part by grants from the USDA (National
Institute of Food and Agriculture) Crops at Risk Program
(2008-51100-04415), the EPA Strategic Agricultural Initiative Program
(0348-0046), and the American Sugar Cane League. This paper is approved
by the Director of the Louisiana Agricultural Experiment Station as
manuscript no. 2012-234-7040.
NR 49
TC 11
Z9 11
U1 1
U2 10
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0022-0493
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD DEC
PY 2012
VL 105
IS 6
BP 1998
EP 2006
DI 10.1603/EC11271
PG 9
WC Entomology
SC Entomology
GA 055VJ
UT WOS:000312445600017
PM 23356064
ER
PT J
AU Gore, J
Catchot, A
Musser, F
Greene, J
Leonard, BR
Cook, DR
Snodgrass, GL
Jackson, R
AF Gore, J.
Catchot, A.
Musser, F.
Greene, J.
Leonard, B. R.
Cook, D. R.
Snodgrass, G. L.
Jackson, R.
TI Development of a Plant-Based Threshold for Tarnished Plant Bug
(Hemiptera: Miridae) in Cotton
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE Lygus; tarnished plant bug; sampling; threshold; cotton
ID MISSISSIPPI RIVER DELTA; PYRETHROID RESISTANCE; FLOWERING COTTON;
UNITED-STATES; POPULATIONS; HETEROPTERA; INSECTICIDE; ACEPHATE; BIOLOGY
AB The tarnished plant bug, Lygus lineolaris (Palisot de Beauvois), is an important pest of cotton, Gossypium hirsutum L., in the mid-southern United States. It is exclusively controlled with foliar insecticide applications, and sampling methods and thresholds need to be revisited. The current experiment was designed to establish a plant-based threshold during the flowering period of cotton development. Experiments were conducted in Mississippi in 2005 and 2006, Arkansas in 2005, and Louisiana in 2005 through 2008. Treatments consisted of various combinations of thresholds based on the percentage of dirty squares that were compared with the current threshold with a drop cloth or automatic weekly applications. Dirty squares were characterized as those with yellow staining on the developing bud resulting from tarnished plant bug excrement. Treatments consisted of 5, 10, 20, and 30% dirty squares. Each plot was sampled weekly, and insecticides were applied when the mean of all replications of a particular treatment reached the designated threshold. At the end of the season, plots were harvested and lint yields were recorded. Differences were observed in the number of applications and yields among the different treatments. The 10% dirty squares threshold resulted in a similar economic return compared with the drop cloth. A threshold of 10% dirty squares resulted in a similar number of insecticide applications, yields, and economic returns compared with that observed with the drop cloth. These results suggest that a threshold of 10% dirty squares could be used to trigger insecticide applications targeting tarnished plant bugs in flowering cotton.
C1 [Gore, J.; Cook, D. R.] Mississippi State Univ, Delta Res & Extens Ctr, Stoneville, MS 38776 USA.
[Catchot, A.; Musser, F.] Mississippi State Univ, Dept Biochem Mol Biol Entomol & Plant Pathol, Mississippi State, MS 39762 USA.
[Greene, J.] Clemson Univ, Edisto Res & Educ Ctr, Blackville, SC 29817 USA.
[Leonard, B. R.] LSU AgCtr, Macon Ridge Res Stn, Winnsboro, LA 71295 USA.
[Snodgrass, G. L.; Jackson, R.] USDA ARS, SIMRU, Stoneville, MS 38776 USA.
RP Gore, J (reprint author), Mississippi State Univ, Delta Res & Extens Ctr, 82 Stoneville Rd,POB 197, Stoneville, MS 38776 USA.
EM jgore@drec.msstate.edu
FU Cotton Incorporated; cotton producers in Mississippi, Arkansas, and
Louisiana
FX The authors thank Cotton Incorporated and cotton producers in
Mississippi, Arkansas, and Louisiana for partial funding of these
experiments. Thanks are also given to numerous personnel at the
associated institutions where these experiments were conducted. This
manuscript has been approved for publication as Journal Article No.
J-12147 of the Mississippi Agricultural and Forestry Experiment Station,
Mississippi State University.
NR 22
TC 5
Z9 5
U1 0
U2 14
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0022-0493
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD DEC
PY 2012
VL 105
IS 6
BP 2007
EP 2014
DI 10.1603/EC12079
PG 8
WC Entomology
SC Entomology
GA 055VJ
UT WOS:000312445600018
PM 23356065
ER
PT J
AU Roda, A
Millar, JG
Rascoe, J
Weihman, S
Stocks, I
AF Roda, Amy
Millar, Jocelyn G.
Rascoe, John
Weihman, Scott
Stocks, Ian
TI Developing Detection and Monitoring Strategies for Planococcus minor
(Hemiptera: Pseudococcidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE Planococcus minor; invasive mealybug; pheromone; molecular marker
ID PINK HIBISCUS MEALYBUG; MACONELLICOCCUS-HIRSUTUS HEMIPTERA; SYNTHETIC
SEX-PHEROMONE; CITRUS MEALYBUG; CALIFORNIA VINEYARDS; PASSIONVINE
MEALYBUG; BAITED TRAPS; IDENTIFICATION; FICUS; HOMOPTERA
AB A pheromone-based system to locate and monitor Planococcus minor (Maskell), a pest of over 250 plants including citrus, grape, and cacao, was tested. The difficulty in distinguishing P. minor from the citrus mealybug, P. citri, makes finding and evaluating the impact of the pest challenging. Studies conducted in Puerto Rico determined that synthetic P. minor pheromone lures preaged 120 d in the field caught similar number of males as lures not aged (fresh). Molecular analysis of trapped mealybug males using mitochondrial cytochrome oxidase-1, the internal transcriber space two locus, and 28S-D2 gene showed the pheromone traps to be species specific. Traps baited with P. minor pheromone were used to monitor the pest in south Florida and to locate potential infestations. P. minor males were found at all locations studied in South Florida and were present in low numbers (1.03 +/- 0.69 mean +/- SE/trap/14 d). Over 14,000 terminals, fruit, and flowers were visually inspected over a 6 mo period of peak trap catches before the first adult P. minor female was found. The synthetic pheromone lures proved to be an effective tool to locate and monitor this pest new to the continental United States.
C1 [Roda, Amy; Weihman, Scott] USDA APHIS PPQ Ctr Plant Hlth Sci & Technol, Miami, FL 33158 USA.
[Millar, Jocelyn G.] Univ Calif Riverside, Dept Entomol, Riverside, CA 92521 USA.
[Rascoe, John] USDA APHIS PPQ Mol Diagnost Lab, Beltsville, MD 20705 USA.
[Stocks, Ian] Florida Dept Agr & Consumer Serv, Div Plant Ind, Gainesville, FL 32608 USA.
RP Roda, A (reprint author), USDA APHIS PPQ Ctr Plant Hlth Sci & Technol, 13601 Old Cutler Rd, Miami, FL 33158 USA.
EM amy.l.roda@usda.aphis.gov
NR 33
TC 3
Z9 3
U1 2
U2 20
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0022-0493
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD DEC
PY 2012
VL 105
IS 6
BP 2052
EP 2061
DI 10.1603/EC12097
PG 10
WC Entomology
SC Entomology
GA 055VJ
UT WOS:000312445600023
PM 23356070
ER
PT J
AU Kachigamba, DL
Ekesi, S
Ndung'u, MW
Gitonga, LM
Teal, PEA
Torto, B
AF Kachigamba, Donald L.
Ekesi, Sunday
Ndung'u, Mary W.
Gitonga, Linus M.
Teal, Peter E. A.
Torto, Baldwyn
TI Evidence for Potential of Managing Some African Fruit Fly Species
(Diptera: Tephritidae) Using the Mango Fruit Fly Host-Marking Pheromone
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE African fruit fly; Ceratitis cosyra; host-marking pheromone; fecal
matter; host discrimination
ID OVIPOSITION-DETERRING PHEROMONE; BACTROCERA-INVADENS DIPTERA;
CERATITIS-CAPITATA DIPTERA; RHAGOLETIS-CERASI; ANASTREPHA-LUDENS; FECES
EXTRACTS; INTERSPECIFIC COMPETITION; MANAGEMENT; BEHAVIOR;
DISCRIMINATION
AB We investigated conspecific and heterospecific oviposition host discrimination among four economically important fruit fly pests of mango in Africa (Ceratitis capitata, Wiedemann; C. fasciventris, Bezzi; C. rosa, Karsch, and C. cosyra, Walker) with regard to host-marking behavior and fecal matter aqueous solutions. The objective of the study was to get insight into the potential of managing these pests using the host-marking technique. Observations were done on mango slices marked by the flies and treated with aqueous solutions of fecal matter of the flies, respectively. In both host-marking and fecal matter experiments, C. cosyra, which is the most destructive species of the four on mango, was exceptional. It only discriminated against hosts treated with its fecal matter but with lower sensitivity while C. capitata and C. fasciventris discriminated against hosts marked by it or treated with its fecal matter and with higher sensitivity. Our results provide evidence for potential of managing some of the major fruit fly species infesting mango in Africa using the host-marking pheromone of the mango fruit fly, C. cosyra.
C1 [Kachigamba, Donald L.; Ekesi, Sunday; Torto, Baldwyn] ICIPE, Behav & Chem Ecol Dept, Nairobi, Kenya.
[Kachigamba, Donald L.; Ndung'u, Mary W.; Gitonga, Linus M.] Jomo Kenyatta Univ Agr & Technol, Nairobi, Kenya.
[Teal, Peter E. A.] USDA ARS, Gainesville, FL USA.
RP Torto, B (reprint author), ICIPE, Behav & Chem Ecol Dept, POB 30772-00100, Nairobi, Kenya.
EM btorto@icipe.org
FU German Academic Exchange Service (DAAD)
FX Many thanks to the Insectary staff at the Animal Rearing and Quarantine
Unit (ARQU) of the International Centre of Insect Physiology and Ecology
(ICIPE) for their help in this study. The support through a studentship
to Donald Kachigamba by the German Academic Exchange Service (DAAD) is
greatly acknowledged.
NR 50
TC 2
Z9 3
U1 6
U2 28
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0022-0493
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD DEC
PY 2012
VL 105
IS 6
BP 2068
EP 2075
DI 10.1603/EC12183
PG 8
WC Entomology
SC Entomology
GA 055VJ
UT WOS:000312445600025
PM 23356072
ER
PT J
AU Domingues, FA
Silva-Brandao, KL
Abreu, AG
Perera, OP
Blanco, CA
Consoli, FL
Omoto, C
AF Domingues, Felipe A.
Silva-Brandao, Karina L.
Abreu, Aluana G.
Perera, Omaththage P.
Blanco, Carlos A.
Consoli, Fernando L.
Omoto, Celso
TI Genetic Structure and Gene Flow Among Brazilian Populations of Heliothis
virescens (Lepidoptera: Noctuidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE cotton; microsatellite; pest management; resistance; soybean
ID BACILLUS-THURINGIENSIS TOXINS; TOBACCO BUDWORM LEPIDOPTERA;
HELICOVERPA-ZEA LEPIDOPTERA; PEST-MANAGEMENT; RESISTANCE;
SUSCEPTIBILITY; EVOLUTION; SELECTION; MARKERS; MOTH
AB Population genetic studies are essential to the better application of pest management strategies, including the monitoring of the evolution of resistance to insecticides and genetically modified plants. Bacillus thuringiensis Berliner (Bt) crops have been instrumental in controlling tobacco budworm, Heliothis virescens (F.) (Lepidoptera: Noctuidae), a pest that has developed resistance to many common insecticides once used for its management. In our study, microsatellite markers were applied to investigate the genetic structure and patterns of gene flow among Brazilian populations of H. virescens from cotton, Gossypium hirsutum L., and soybean, Glycine max (L.) Merr., fields, aiming to propose means to improve its management in the field. In total, 127 alleles were found across nine microsatellites loci for 205 individuals from 12 localities. Low levels of gene flow and moderate to great genetic structure were found for these populations. Host plant association, crop growing season, and geographic origin were not responsible for the genetic structuring among Brazilian populations of H. virescens. Other factors, such as demographic history and seasonal variability of intrapopulation genetic variation, were suggested to be molding the current pattern of genetic variability distribution.
C1 [Domingues, Felipe A.; Silva-Brandao, Karina L.; Consoli, Fernando L.; Omoto, Celso] Univ Sao Paulo ESALQ USP, Dept Entomol & Acarol, Escola Super Agr Luiz de Queiroz, BR-13418900 Piracicaba, SP, Brazil.
[Abreu, Aluana G.] EMBRAPA Arroz & Feijao, BR-75375000 Santo Antonio De Goias, Go, Brazil.
[Perera, Omaththage P.] USDA ARS, So Insect Management Res Unit, Stoneville, MS 38776 USA.
[Blanco, Carlos A.] USDA APHIS, Biotechnol Regulatory Serv, Riverdale, MD 20737 USA.
RP Silva-Brandao, KL (reprint author), Univ Sao Paulo ESALQ USP, Dept Entomol & Acarol, Escola Super Agr Luiz de Queiroz, Av Padua Dias 11, BR-13418900 Piracicaba, SP, Brazil.
EM klsilva@gmail.com
RI Consoli, Fernando Luis/D-5706-2012; Abreu, Aluana/L-7772-2013; Omoto,
Celso/D-9794-2012
OI Consoli, Fernando Luis/0000-0002-2287-0782; Abreu,
Aluana/0000-0003-2765-3741; Omoto, Celso/0000-0002-6432-830X
FU Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq)
[CNPq/MAPA 578509/2008-3]; Coordenacao de Aperfeicoamento de Pessoal de
Nivel Superior (CAPES) [0103/08-0]
FX We thank Sinval Silveira Neto for specimen identification, Maria
Imaculada Zucchi and Vitor A. C. Pavinato for helping with
microsatellite protocol development, Pablo Fresia for helping with
analyses and discussion of results, and Marcelo M. Brandao for helping
with figures. We thank Conselho Nacional de Desenvolvimento Cientifico e
Tecnologico (CNPq) (Process CNPq/MAPA 578509/2008-3) for providing
financial support and Coordenacao de Aperfeicoamento de Pessoal de Nivel
Superior (CAPES) for a graduate scholarship to the senior author and for
the postdoctoral fellowship to K.L.S.-B. (PRODOC Process 0103/08-0).
NR 74
TC 5
Z9 5
U1 2
U2 35
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 0022-0493
EI 1938-291X
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD DEC
PY 2012
VL 105
IS 6
BP 2136
EP 2146
DI 10.1603/EC12123
PG 11
WC Entomology
SC Entomology
GA 055VJ
UT WOS:000312445600033
PM 23356080
ER
PT J
AU Ruiz-Arce, R
Barr, NB
Owen, CL
Thomas, DB
McPheron, BA
AF Ruiz-Arce, Raul
Barr, Norman B.
Owen, Christopher L.
Thomas, Donald B.
McPheron, Bruce A.
TI Phylogeography of Anastrepha obliqua Inferred With mtDNA Sequencing
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE Anastrepha obliqua; mitochondrial DNA; West Indian fruit fly;
sequencing; COI
ID BAYESIAN PHYLOGENETIC INFERENCE; MEDITERRANEAN FRUIT-FLY;
MITOCHONDRIAL-DNA; CERATITIS-CAPITATA; DIPTERA TEPHRITIDAE; FRATERCULUS
DIPTERA; MAXIMUM-LIKELIHOOD; SPECIES COMPLEX; POPULATIONS; POLYMORPHISM
AB Anastrepha obliqua (Macquart) (Diptera: Tephritidae), the West Indian fruit fly, is a frugivorous pest that occasionally finds its way to commercial growing areas outside its native distribution. It inhabits areas in Mexico, Central and South America, and the Caribbean with occasional infestations having occurred in the southern tier states (California, Florida, and Texas) of the United States. This fly is associated with many plant species and is a major pest of mango and plum. We examine the genetic diversity of the West Indian fruit fly based on mitochondrial COI and ND6 DNA sequences. Our analysis of 349 individuals from 54 geographic collections from Mexico, Central America, the Caribbean, and South America detected 61 haplotypes that are structured into three phylogenetic clades. The distribution of these clades among populations is associated with geography. Six populations are identified in this analysis: Mesoamerica, Central America, Caribbean, western Mexico, Andean South America, and eastern Brazil. In addition, substantial differences exist among these genetic types that warrants further taxonomic review.
C1 [Ruiz-Arce, Raul; Barr, Norman B.] USDA APHIS, Ctr Sci & Technol, Mission Lab, Moore Air Base, Edinburg, TX 78541 USA.
[Ruiz-Arce, Raul; Owen, Christopher L.; McPheron, Bruce A.] Penn State Univ, Dept Entomol, University Pk, PA 16801 USA.
[Owen, Christopher L.] Univ Connecticut, Dept Ecol & Evolutionary Biol, Storrs, CT 06268 USA.
[Thomas, Donald B.] USDA ARS, Kika de la Garza Subtrop Agr Res Ctr, Weslaco, TX 78596 USA.
RP Ruiz-Arce, R (reprint author), USDA APHIS, Ctr Sci & Technol, Mission Lab, Moore Air Base, Edinburg, TX 78541 USA.
EM raul.a.ruiz@aphis.usda.gov
OI McPheron, Bruce/0000-0001-9623-5100
FU USDA-APHIS-CPHST, PIC [M6M02]; USDA/Penn State [07-8100-1051-CA]; Alfred
P. Sloan Foundation
FX We thank Roxanne E. Garza-Farris, Rosita De Leon, Juan D. Vasquez, Lisa
A. Ledezma, and Oscar Obregon for providing DNA extracts from the
USDA-APHIS-CPHST Mission Laboratory in Edinburg, TX; Samuel Gum and
Oralia Ruiz for technical assistance at Penn State University; Deborah
S. Grove, Director of the Genomics Core Facility; and Ashley Price and
Sheila Plock, The Pennsylvania State University-Huck Institute Nucleic
Acid Facility. We also thank William Dombro at Worthington Biochemical.
We are also grateful to the two anonymous colleagues from this journal
that reviewed our manuscript. Funding for this study came from the
USDA-APHIS-CPHST, PIC#M6M02, USDA/Penn State cooperative agreement
07-8100-1051-CA, and the Alfred P. Sloan Foundation. The use or mention
of a trademark or proprietary product does not constitute an
endorsement, guarantee, or warranty of the product and does not imply
its approval to the exclusion of other suitable products by the U.S.
Department of Agriculture, an equal opportunity employer.
NR 53
TC 10
Z9 10
U1 1
U2 25
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0022-0493
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD DEC
PY 2012
VL 105
IS 6
BP 2147
EP 2160
DI 10.1603/EC12211
PG 14
WC Entomology
SC Entomology
GA 055VJ
UT WOS:000312445600034
PM 23356081
ER
PT J
AU Pound, JM
Lohmeyer, KH
Davey, RB
Miller, JA
George, JE
AF Pound, J. M.
Lohmeyer, K. H.
Davey, R. B.
Miller, J. A.
George, J. E.
TI Efficacy of Amitraz-Impregnated Collars on White-Tailed Deer
(Artiodactyla: Cervidae) in Reducing Free-Living Populations of Lone
Star Ticks (Acari: Ixodidae)
SO JOURNAL OF ECONOMIC ENTOMOLOGY
LA English
DT Article
DE tick control; neckband; collar; amitraz; white-tailed deer
ID TOPICAL TREATMENT DEVICE; TEXAS/MEXICO BORDER; INFESTATIONS
AB Over a 7 yr period, we monitored the effect of a commercially available, amitraz impregnated anti-tick collar in controlling free-living populations of lone star ticks, Amblyomma americanum (L.) when manually fitted around necks of white-tailed deer, Odocoileus virginianus (Zimmermann). Study animals in treatment and control groups were confined in 38.8 ha game-fenced and densely vegetated treatment plots in South Texas. Tick densities during years 1 and 7 served as untreated pre- and posttreatment comparisons and treatments occurred during years 2 through 5. Reductions in tick densities in the treatment plot were compared against tick densities in a control plot having similar vegetation and numbers of untreated deer. During years of treatment, indices of control pressure ranged from 18.2 to 82.6 for nymphs and 16.9-78.7 for adults, and efficacy, expressed as percentage control during the final year of treatment, was 77.2 and 85.0%, respectively, for nymphal and adult ticks. These data show that acaricidal collar treatments provide efficacies very similar to those achieved with the existing ivermectin-medicated bait and '4-Poster' topical treatment technologies to control ticks feeding on wild white-tailed deer.
C1 [Pound, J. M.; Lohmeyer, K. H.] USDA ARS, Knipling Bushland US Livestock Insects Res Lab, Kerrville, TX 78028 USA.
[Davey, R. B.] USDA ARS, Cattle Fever Tick Res Lab, Edinburg, TX 78541 USA.
RP Pound, JM (reprint author), USDA ARS, Knipling Bushland US Livestock Insects Res Lab, 2700 Fredericksburg Rd, Kerrville, TX 78028 USA.
EM mat.pound@ars.usda.gov
NR 20
TC 4
Z9 4
U1 1
U2 14
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0022-0493
J9 J ECON ENTOMOL
JI J. Econ. Entomol.
PD DEC
PY 2012
VL 105
IS 6
BP 2207
EP 2212
DI 10.1603/EC12219
PG 6
WC Entomology
SC Entomology
GA 055VJ
UT WOS:000312445600041
PM 23356088
ER
PT J
AU Moser, WK
AF Moser, W. Keith
TI A Look Back
SO JOURNAL OF FORESTRY
LA English
DT Editorial Material
ID TIME
C1 US Forest Serv, USDA, Forest Inventory & Anal Program, No Res Stn, St Paul, MN 55108 USA.
RP Moser, WK (reprint author), US Forest Serv, USDA, Forest Inventory & Anal Program, No Res Stn, 1992 Folwell Ave, St Paul, MN 55108 USA.
EM moserk@safnet.org
NR 4
TC 1
Z9 1
U1 0
U2 0
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0022-1201
J9 J FOREST
JI J. For.
PD DEC
PY 2012
VL 110
IS 8
BP 413
EP 414
DI 10.5849/jof.12-125
PG 2
WC Forestry
SC Forestry
GA 066ME
UT WOS:000313224100001
ER
PT J
AU Williams, DR
Jakes, PJ
Burns, S
Cheng, AS
Nelson, KC
Sturtevant, V
Brummel, RF
Staychock, E
Souter, SG
AF Williams, Daniel R.
Jakes, Pamela J.
Burns, Sam
Cheng, Antony S.
Nelson, Kristen C.
Sturtevant, Victoria
Brummel, Rachel F.
Staychock, Emily
Souter, Stephanie G.
TI Community Wildfire Protection Planning: The Importance of Framing,
Scale, and Building Sustainable Capacity
SO JOURNAL OF FORESTRY
LA English
DT Article
DE Healthy Forest Restoration Act; wildfire planning; wildland fire;
wildland-urban interface
ID EASTERN UNITED-STATES; MANAGEMENT; COLLABORATION; RESTORATION; POLICY
AB Community wildfire protection planning has become an important tool for engaging wildland-urban interface residents and other stakeholders in efforts to address their mutual concerns about wildland fire management, prioritize hazardous fuel reduction projects, and improve forest health. Drawing from 13 case studies from across the United States, this article describes best management practices (BMP) that emerged from the data for facilitating the development of Community Wildfire Protection Plans (CWPPs) and ensuring that planning leads to action on the ground. Three BMPs are emphasized: (1) paying attention to problem framing, (2) choosing a scale where participants can make things happen, and (3) taking steps to facilitate implementation and ensure long-term success. These BMPs were found to hold true despite considerable diversity across the cases.
C1 [Williams, Daniel R.] US Forest Serv, USDA, Rocky Mt Res Stn, Ft Collins, CO 80526 USA.
[Jakes, Pamela J.] US Forest Serv, USDA, No Res Stn, St Paul, MN 55108 USA.
[Burns, Sam] Ft Lewis Coll, Off Community Serv, Durango, CO 81301 USA.
[Cheng, Antony S.] Colorado State Univ, Warner Coll Nat Resources, Colorado Forest Restorat Inst, Ft Collins, CO 80523 USA.
[Nelson, Kristen C.] Univ Minnesota, Dept Forest Resources, St Paul, MN 55108 USA.
[Sturtevant, Victoria] So Oregon Univ, Dept Environm Studies Program, Ashland, OR 97520 USA.
[Brummel, Rachel F.] Lafayette Coll, Environm Studies Program, Easton, PA 18042 USA.
[Staychock, Emily] Finger Lakes Community Coll, Canandaigua, NY 14424 USA.
[Souter, Stephanie G.] Minnesota Pullut Control Agcy, Minnesota GreenCorps Program, St Paul, MN 55155 USA.
RP Williams, DR (reprint author), US Forest Serv, USDA, Rocky Mt Res Stn, 2150A,Ctr Ave, Ft Collins, CO 80526 USA.
EM drwilliams@fs.fed.us; pjakes@fs.fed.us; BURNS_S@fortlewis.edu;
Tony.Cheng@ColoState.edu; kcn@umn.edu; sturtevant@sou.edu;
brummelr@layfayette.edu; stayches@flcc.edu; stephanie.souter@state.mn.us
RI Williams, Daniel/D-8114-2011; Cheng, Antony/N-9538-2015
OI Williams, Daniel/0000-0003-2428-0345; Cheng, Antony/0000-0002-0977-0381
FU Joint Fire Science Program [04-S-01]; National Fire Plan through
Northern Research Station; National Fire Plan through Rocky Mountain
Research Station
FX This research was funded by the Joint Fire Science Program, Project ID
04-S-01, "Community Wildfire Protection Plans: Enhancing Collaboration
and Building Social Capacity," the National Fire Plan through the
Northern and Rocky Mountain Research Stations, and the authors' home
institutions. Special thanks to individuals interviewed for this study
and the Research Advisory Team, which provided "ground-truthing" of
research findings.
NR 24
TC 10
Z9 10
U1 4
U2 18
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0022-1201
J9 J FOREST
JI J. For.
PD DEC
PY 2012
VL 110
IS 8
BP 415
EP 420
DI 10.5849/jof.12-001
PG 6
WC Forestry
SC Forestry
GA 066ME
UT WOS:000313224100004
ER
PT J
AU Kocher, SD
Toman, E
Trainor, SF
Wright, V
Briggs, JS
Goebel, CP
MontBlanc, EM
Oxarart, A
Pepin, DL
Steelman, TA
Thode, A
Waldrop, TA
AF Kocher, Susan D.
Toman, Eric
Trainor, Sarah F.
Wright, Vita
Briggs, Jennifer S.
Goebel, Charles P.
MontBlanc, Eugenie M.
Oxarart, Annie
Pepin, Donna L.
Steelman, Toddi A.
Thode, Andrea
Waldrop, Thomas A.
TI How Can We Span the Boundaries between Wildland Fire Science and
Management in the United States?
SO JOURNAL OF FORESTRY
LA English
DT Article
DE fire science; boundary organization; fire management; Joint Fire Science
Program; technology transfer
ID CLIMATE FORECASTS; DECISION-MAKING; POLICY; INFORMATION; INTERFACE;
PERCEPTIONS
AB In 2009, the federal Joint Fire Science Program (JFSP) initiated a national network of boundary organizations, known as regional fire science consortia, to accelerate the awareness, understanding, and use of wildland fire science. Needs assessments conducted by consortia in eight regions of the United States are synthesized here using a case survey approach. Although regions used different methods based on their different ecosystems, geography, and demography, results showed striking similarities in how fire science is accessed and used, barriers to its use, and research information needed. Use of Internet-based information is universally high; however, in-person knowledge exchange is preferred. Obstacles to fire science application include lack of time, resources, and access to the most relevant information as well as communication barriers between scientists and managers. Findings show a clear need for boundary organizations to span fire science and management to (a) organize and consolidate fire science information through easily accessible websites and (b) strengthen relationships between scientists and managers to facilitate production and communication of science relevant to managers' concerns. This article contributes to boundary spanning theory by underscoring and documenting the advantages of regionally focused boundary organizations in meeting user needs and building bridges between fire scientists and managers.
C1 [Kocher, Susan D.] Univ Calif Cooperat Extens, S Lake Tahoe, CA 96150 USA.
[Toman, Eric] Ohio State Univ, Sch Environm & Nat Resources, Columbus, OH 43210 USA.
[Trainor, Sarah F.] Univ Alaska, Dept Geog, Fairbanks, AK 99701 USA.
[Wright, Vita] US Forest Serv, USDA, Rocky Mt Res Stn, NPS Branch Wildland Fire, Kalispell, MT USA.
[Briggs, Jennifer S.] US Geol Survey, Rocky Mt Geog Sci Ctr, Denver, CO 80225 USA.
[Goebel, Charles P.] Ohio State Univ, Sch Environm & Nat Resources, Wooster, OH USA.
[MontBlanc, Eugenie M.] Univ Nevada, Reno, NV 89557 USA.
[Oxarart, Annie] Univ Florida, Sch Forest Resources & Conservat, Gainesville, FL 32611 USA.
[Pepin, Donna L.] Natl Pk Serv, W Glacier, MT USA.
[Steelman, Toddi A.] Univ Saskatchewan, Sch Environm & Sustainabil, Saskatoon, SK, Canada.
[Thode, Andrea] No Arizona Univ, Sch Forestry, Flagstaff, AZ 86011 USA.
[Waldrop, Thomas A.] US Forest Serv, USDA, So Res Stn, Clemson, SC USA.
RP Kocher, SD (reprint author), Univ Calif Cooperat Extens, S Lake Tahoe, CA 96150 USA.
EM sdkocher@ucanr.edu; toman.10@osu.edu; sarah.trainor@alaska.edu;
vwright@fs.fed.us; jsbriggs@usgs.gov; goebel.11@osu.edu;
emb@cabnr.unr.edu; oxarart@ufl.edu; donna_pepin@nps.gov;
Toddi.Steelman@usask.ca; Andi.thode@nau.edu; twaldrop@fs.fed.us
FU Joint Fire Science Program
FX The authors acknowledge funding from the Joint Fire Science Program to
carry out the needs assessments described here as well as the efforts of
the many involved with the Regional Fire Exchange Network for their work
in collecting the data analyzed in this article and for their efforts at
spanning the boundary between fire science and management. The first
four authors contributed equally to article preparation.
NR 40
TC 7
Z9 7
U1 0
U2 26
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0022-1201
J9 J FOREST
JI J. For.
PD DEC
PY 2012
VL 110
IS 8
BP 421
EP 428
DI 10.5849/jof.11-085
PG 8
WC Forestry
SC Forestry
GA 066ME
UT WOS:000313224100005
ER
PT J
AU Reilly, E
AF Reilly, Ed
TI The Pilot Joe Project: Dry Forest Restoration in Southwestern Oregon
SO JOURNAL OF FORESTRY
LA English
DT Article
C1 [Reilly, Ed] US Forest Serv, Pilot Joe Project, Washington, DC USA.
[Reilly, Ed] Bur Land Management, Washington, DC USA.
EM edwardcreilly@gmail.com
NR 0
TC 1
Z9 1
U1 0
U2 8
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0022-1201
J9 J FOREST
JI J. For.
PD DEC
PY 2012
VL 110
IS 8
BP 442
EP 445
DI 10.5849/jof.12-081
PG 4
WC Forestry
SC Forestry
GA 066ME
UT WOS:000313224100008
ER
PT J
AU Yanai, RD
Levine, CR
Green, MB
Campbell, JL
AF Yanai, Ruth D.
Levine, Carrie R.
Green, Mark B.
Campbell, John L.
TI Quantifying Uncertainty in Forest Nutrient Budgets
SO JOURNAL OF FORESTRY
LA English
DT Review
DE allometry; soil; input-output; Hubbard Brook Experimental Forest
ID NORTHERN HARDWOOD FOREST; NORTHEASTERN UNITED-STATES; HUBBARD BROOK
ECOSYSTEM; LOAD ESTIMATION; SAMPLING FREQUENCY; NEW-HAMPSHIRE;
STREAM-WATER; BIOMASS; CARBON; NITROGEN
AB Nutrient budgets for forested ecosystems have rarely included error analysis, in spite of the importance of uncertainly to interpretation and extrapolation of the results. Uncertainty derives from natural spatial and temporal variation and also from knowledge uncertainty in measurement and models. For example, when estimating forest biomass, researchers commonly report sampling uncertainty but rarely propagate the uncertainty in the allometric equations used to estimate tree biomass, much less the uncertainty in the selection of which allometric equations to use. Change over time may have less uncertainty than a single measurement, if the measures are consistently biased, as by the use of inaccurate allometric equations or soil sampling techniques. Quantifying uncertainty is not as difficult as is sometimes believed. Here, we describe recent progress in quantifying uncertainty in biomass, soils, and hydrologic inputs and outputs, using examples from the Hubbard Brook Experimental Forest, New Hampshire, USA.
C1 [Yanai, Ruth D.] SUNY Coll Environm Sci & Forestry, Dept Forest & Nat Resources Management, Syracuse, NY 13210 USA.
[Levine, Carrie R.] Univ Calif Berkeley, Dept Environm Sci Policy & Management, Berkeley, CA 94720 USA.
[Green, Mark B.] Plymouth State Univ, Ctr Environm, Plymouth, NH 03264 USA.
[Green, Mark B.; Campbell, John L.] US Forest Serv, No Res Stn, USDA, Durham, NH 03824 USA.
RP Yanai, RD (reprint author), SUNY Coll Environm Sci & Forestry, Dept Forest & Nat Resources Management, 106 Marshall Hall,1 Forestry Dr, Syracuse, NY 13210 USA.
EM rdyanai@syr.edu; crlevine@berkeley.edu; mbgreen@plymouth.edu;
jlcampbell@fs.fed.us
OI Green, Mark/0000-0002-7415-7209; Campbell, John/0000-0003-4956-1696
FU National Science Foundation; LTER Network Office
FX Helpful reviews of this paper were provided by John Battles, Don Buso,
and anonymous reviewers. This manuscript is a contribution of the
Hubbard Brook Ecosystem Study. Hubbard Brook is part of the Long-Term
Ecological Research (LTER) network, which is supported by the National
Science Foundation. The Hubbard Brook Experimental Forest is operated
and maintained by the USDA Forest Service, Northern Research Station,
Newtown Square, PA. QUEST is currently supported by the National Science
Foundation (NSF) and LTER Network Office.
NR 41
TC 15
Z9 15
U1 1
U2 32
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0022-1201
J9 J FOREST
JI J. For.
PD DEC
PY 2012
VL 110
IS 8
BP 448
EP 456
DI 10.5849/jof.11-087
PG 9
WC Forestry
SC Forestry
GA 066ME
UT WOS:000313224100010
ER
PT J
AU Chojnacky, CC
AF Chojnacky, Cindy C.
TI Leadership Impact on Forest Service Operations: Intriguing Ideas from
Public Administration Theories
SO JOURNAL OF FORESTRY
LA English
DT Editorial Material
C1 [Chojnacky, Cindy C.] US Forest Serv, USDA, Falls Church, VA 22046 USA.
EM cchoj@cox.net
NR 31
TC 3
Z9 3
U1 0
U2 2
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0022-1201
J9 J FOREST
JI J. For.
PD DEC
PY 2012
VL 110
IS 8
BP 457
EP 462
DI 10.5849/jof.12-023
PG 6
WC Forestry
SC Forestry
GA 066ME
UT WOS:000313224100011
ER
PT J
AU Mason, A
Blanche, CL
Crowe, T
Gold, M
Jacobson, M
Jose, S
Josiah, S
Norland, E
Onokpise, K
Wight, B
AF Mason, Andy
Blanche, Cato Lino
Crowe, Tom
Gold, Mike
Jacobson, Mike
Jose, Shibu
Josiah, Scoff
Norland, Eric
Onokpise, Kome
Wight, Bruce
TI Advancing Agroforestry through Certification of Agroforesters: Should
the Society of American Foresters Have a Role?
SO JOURNAL OF FORESTRY
LA English
DT Editorial Material
C1 [Mason, Andy] US Forest Serv, USDA, Natl Agroforestry Ctr, Washington, DC 20250 USA.
[Blanche, Cato Lino] Natl Inst Food & Agr, McIntire Stennis Cooperat Forestry Program, USDA, Washington, DC USA.
[Crowe, Tom] Crowe Forest Management LLC, Leo, IN USA.
[Crowe, Tom] NACD, Forest Resources Policy Grp, Washington, DC 20002 USA.
[Gold, Mike] Univ Missouri, Sch Nat Resources, Columbia, MO USA.
[Gold, Mike] Chestnut Growers Amer, Alachua, FL USA.
[Jacobson, Mike] Penn State Univ, Sch Forest Resources, University Pk, PA 16802 USA.
[Jacobson, Mike] Assoc Temperate Agroforestry, Columbia, MO USA.
[Jose, Shibu] Univ Missouri, Ctr Agroforestry, Columbia, MO USA.
[Josiah, Scoff] Nebraska Forest Serv, Lincoln, NE USA.
[Onokpise, Kome] Florida A&M Univ, Coll Agr & Food Sci, Tallahassee, FL 32307 USA.
[Wight, Bruce] NRCS, USDA, Washington, DC USA.
RP Mason, A (reprint author), US Forest Serv, USDA, Natl Agroforestry Ctr, Washington, DC 20250 USA.
EM amason@fs.fed.us; cblanche@nifa.usda.gov; toms.trees@hotmail.com;
goldm@missouri.edu; mgj2@psu.edu; joses@missouri.edu;
sjosiah@unlnotes.unl.edu; enorland@nifa.usda.gov;
oghenekome.onokpise@famu.edu; bruce.wight@wdc.usda.gov
NR 0
TC 0
Z9 0
U1 0
U2 2
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0022-1201
J9 J FOREST
JI J. For.
PD DEC
PY 2012
VL 110
IS 8
BP 466
EP 467
DI 10.5849/jof.12-069
PG 2
WC Forestry
SC Forestry
GA 066ME
UT WOS:000313224100012
ER
PT J
AU Linthicum, KJ
AF Linthicum, Kenneth J.
TI INTRODUCTION TO THE SYMPOSIUM GLOBAL PERSPECTIVE ON THE CULEX PIPIENS
COMPLEX IN THE 21ST CENTURY: THE INTERRELATIONSHIP OF CULEX PIPIENS,
QUINQUEFASCIATUS, MOLESTUS AND OTHERS
SO JOURNAL OF THE AMERICAN MOSQUITO CONTROL ASSOCIATION
LA English
DT Article
DE Species complex; symposium; taxonomy; mosquito; vector-borne disease
ID VALLEY FEVER VIRUS; WUCHERERIA BANCROFTI COBBOLD; FATIGANS WIEDEMANN;
WEST-NILE; INSECTICIDE-RESISTANCE; TRANSMISSION; MOSQUITO; DIPTERA;
DISEASE; VECTOR
AB Mosquitoes in the Culex pipiens Complex, including Culex pipiens, Cx. quinquefasciatus, and Cx. molestus, are important pest species and vectors of human and animal diseases throughout the world's tropical, temperate, and Holarctic regions. Diseases transmitted by member of the Pipiens Complex include: St. Louis encephalitis and West Nile virus in North America, West Nile virus on several other continents, Rift Valley fever in Africa, lymphatic filariasis caused by Wuchereria bancrofti in the tropics, and Dirofilaria immitis globally. Here and in the following 14 papers, 3 abstracts and a summary paper are the proceedings of a symposium that gathered many of the world's experts on the Pipiens Complex to explore the current state of knowledge of the taxa. Information presented at the symposium will improve our knowledge of important members of the complex and enhance our ability to conduct efficient surveillance and efficacious control strategies. A background on previous discussions on the Pipiens Complex, and a brief description of current symposium contributors and their topics are discussed.
C1 ARS, USDA, Ctr Med Agr & Vet Entomol, Gainesville, FL 32608 USA.
RP Linthicum, KJ (reprint author), ARS, USDA, Ctr Med Agr & Vet Entomol, 1600-1700 SW 23rd Dr, Gainesville, FL 32608 USA.
NR 57
TC 2
Z9 3
U1 0
U2 8
PU AMER MOSQUITO CONTROL ASSOC
PI MOUNT LAUREL
PA 15000 COMMERCE PARKWAY, SUITE C, MOUNT LAUREL, NJ 08054 USA
SN 8756-971X
J9 J AM MOSQUITO CONTR
JI J. Am. Mosq. Control Assoc.
PD DEC
PY 2012
VL 28
IS 4
SU S
BP 4
EP 9
PG 6
WC Entomology
SC Entomology
GA 059BN
UT WOS:000312679500002
PM 23401940
ER
PT J
AU Linthicum, KJ
AF Linthicum, Kenneth J.
TI SUMMARY OF THE SYMPOSIUM GLOBAL PERSPECTIVE ON THE CULEX PIPIENS COMPLEX
IN THE 21ST CENTURY: THE INTERRELATIONSHIP OF CULEX PIPIENS,
QUINQUEFASCIATUS, MOLESTUS AND OTHERS
SO JOURNAL OF THE AMERICAN MOSQUITO CONTROL ASSOCIATION
LA English
DT Article
DE Species complex; symposium; taxonomy; mosquito; vector-borne disease
AB A symposium on the mosquitoes in the Culex pipiens Complex (Pipiens Complex), including Cx. pipiens, Cx. quinquefasciatus, and Cx. molestus, invited 17 of the world's experts on this species Complex to explore the current state of knowledge on the systematic status, speciation, ecology, biology, vector competence, population genetics, endosymbionts, and role in disease transmission of these species in various parts of the world. A Foreword, Introduction, 14 full papers, 3 abstracts and this Summary are published in this special issue of the Journal of the American Mosquito Control Association. A summary of findings, overall conclusions, and research needs will be discussed in relation to mosquito control and interrupting disease transmission caused by these species.
C1 ARS, USDA, Ctr Med Agr & Vet Entomol, Gainesville, FL 32608 USA.
RP Linthicum, KJ (reprint author), ARS, USDA, Ctr Med Agr & Vet Entomol, 1600-1700 SW 23rd Dr, Gainesville, FL 32608 USA.
NR 3
TC 0
Z9 0
U1 0
U2 5
PU AMER MOSQUITO CONTROL ASSOC
PI MOUNT LAUREL
PA 15000 COMMERCE PARKWAY, SUITE C, MOUNT LAUREL, NJ 08054 USA
SN 8756-971X
J9 J AM MOSQUITO CONTR
JI J. Am. Mosq. Control Assoc.
PD DEC
PY 2012
VL 28
IS 4
SU S
BP 152
EP 155
PG 4
WC Entomology
SC Entomology
GA 059BN
UT WOS:000312679500020
PM 23401955
ER
PT J
AU Morris, JWF
Crest, M
Barlaz, MA
Spokas, KA
Akerman, A
Yuan, L
AF Morris, Jeremy W. F.
Crest, Marion
Barlaz, Morton A.
Spokas, Kurt A.
Akerman, Anna
Yuan, Lei
TI Improved methodology to assess modification and completion of landfill
gas management in the aftercare period
SO WASTE MANAGEMENT
LA English
DT Article
DE Post-closure care; Aftercare; Landfill gas; Methane; Completion
ID METHANE OXIDATION; COVER SOILS; EMISSIONS; CAPACITY; DYNAMICS
AB Municipal solid waste landfills represent the dominant option for waste disposal in many parts of the world. While some countries have greatly reduced their reliance on landfills, there remain thousands of landfills that require aftercare. The development of cost-effective strategies for landfill aftercare is in society's interest to protect human health and the environment and to prevent the emergence of landfills with exhausted aftercare funding. The Evaluation of Post-Closure Care (EPCC) methodology is a performance-based approach in which landfill performance is assessed in four modules including leachate, gas, groundwater, and final cover. In the methodology, the objective is to evaluate landfill performance to determine when aftercare monitoring and maintenance can be reduced or possibly eliminated. This study presents an improved gas module for the methodology. While the original version of the module focused narrowly on regulatory requirements for control of methane migration, the improved gas module also considers best available control technology for landfill gas in terms of greenhouse gas emissions, air quality, and emissions of odoriferous compounds. The improved module emphasizes the reduction or elimination of fugitive methane by considering the methane oxidation capacity of the cover system. The module also allows for the installation of biologically active covers or other features designed to enhance methane oxidation. A methane emissions model, CALMIM, was used to assist with an assessment of the methane oxidation capacity of landfill covers. (c) 2012 Elsevier Ltd. All rights reserved.
C1 [Morris, Jeremy W. F.; Yuan, Lei] Geosyntec Consultants, Columbia, MD 21046 USA.
[Crest, Marion] Suez Environm, F-78230 Le Pecq, France.
[Barlaz, Morton A.] N Carolina State Univ, Dept Civil Construct & Environm Engn, Raleigh, NC 27695 USA.
[Spokas, Kurt A.] ARS, USDA, St Paul, MN 55108 USA.
[Akerman, Anna] SITA France, F-92040 Paris, France.
RP Morris, JWF (reprint author), Geosyntec Consultants, 10220 Old Columbia Rd,Suite A, Columbia, MD 21046 USA.
EM jmorris@geosyntec.com; marion.crest@suez-env.com; barlaz@ncsu.edu;
kurt.spokas@ars.usda.gov; anna.akerman@sita.fr; lyuan@geosyrttec.com
RI Spokas, Kurt/F-4839-2016
OI Spokas, Kurt/0000-0002-5049-5959
FU French Agence de l'Environnement et de la Maitrise de l'Energie (ADEME);
US-based Environmental Research and Education Foundation (EREF)
FX This study was partially funded under a grant from the French Agence de
l'Environnement et de la Maitrise de l'Energie (ADEME). Original
development of the EPCC methodology was funded by the US-based
Environmental Research and Education Foundation (EREF). Permission to
use methane data from sites in the US and France was provided by the
Delaware Solid Waste Authority and SITA France, respectively, and is
gratefully acknowledged.
NR 38
TC 1
Z9 1
U1 2
U2 43
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0956-053X
J9 WASTE MANAGE
JI Waste Manage.
PD DEC
PY 2012
VL 32
IS 12
BP 2364
EP 2373
DI 10.1016/j.wasman.2012.07.017
PG 10
WC Engineering, Environmental; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA 058ZY
UT WOS:000312675400020
PM 22884579
ER
PT J
AU Richards, JH
Kuhn, DN
Bishop, K
AF Richards, Jennifer H.
Kuhn, David N.
Bishop, Kristin
TI INTERRELATIONSHIPS OF PETIOLAR AIR CANAL ARCHITECTURE, WATER DEPTH, AND
CONVECTIVE AIR FLOW IN NYMPHAEA ODORATA (NYMPHAEACEAE)
SO AMERICAN JOURNAL OF BOTANY
LA English
DT Article
DE aerenchyma; air canals; Knudsen flow; Nymphaea odorata; Nymphaeaceae;
pressurized flow; white water lily
ID TRIN EX STEUD; PHRAGMITES-AUSTRALIS; PRESSURIZED VENTILATION;
ELEOCHARIS-SPHACELATA; GAS-FLOW; INTERNAL AERATION; NELUMBO-NUCIFERA;
PLANTS; TRANSPORT; PATHWAYS
AB Premise of the study: Nymphaea odorata grows in water up to 2 m deep, producing fewer larger leaves in deeper water. This species has a convective flow system that moves gases from younger leaves through submerged parts to older leaves, aerating submerged parts. Petiolar air canals are the convective flow pathways. This study describes the structure of these canals, how this structure varies with water depth, and models how convective flow varies with depth.
Methods: Nymphaea odorata plants were grown at water depths from 30 to 90 cm. Lamina area, petiolar cross-sectional area, and number and area of air canals were measured. Field-collected leaves and leaves from juvenile plants were analyzed similarly. Using these data and data from the literature, we modeled how convective flow changes with water depth.
Key results: Petioles of N. odorata produce two central pairs of air canals; additional pairs are added peripherally, and succeeding pairs are smaller. The first three pairs account for 96% of air canal area. Air canals form 24% of petiolar cross-sectional area. Petiolar and air canal cross-sectional areas increase with water depth. Petiolar area scales with lamina area, but the slope of this relationship is lower in 90 cm water than at shallower depths. In our model, the rate of convective flow varied with depth and with the balance of influx to efflux leaves.
Conclusions: Air canals in N. odorata petioles increase in size and number in deeper water but at a decreasing amount in relation to lamina area. Convective flow also depends on the number of influx to efflux laminae.
C1 [Richards, Jennifer H.; Bishop, Kristin] Florida Int Univ, Dept Biol Sci, Miami, FL 33155 USA.
[Richards, Jennifer H.] Florida Int Univ, SE Environm Res Ctr, Miami, FL 33155 USA.
[Kuhn, David N.] USDA, Agr Res Stn, Subtrop Hort Res Stn, Miami, FL 33155 USA.
RP Richards, JH (reprint author), Florida Int Univ, Dept Biol Sci, 11200 SW 8th St, Miami, FL 33155 USA.
EM Richards@fiu.edu
FU Everglades National Park [CA H5297-05-0013]
FX The authors thank T. Troxler and M. Dow for help with the mesocosm
experiment. D. Gann and E. Kline helped with field collections. The
mesocosm experiment described in this work was supported by Everglades
National Park under cooperative agreement CA H5297-05-0013. This is
contribution number 578 from the Southeast Environmental Research Center
at Florida International University.
NR 36
TC 2
Z9 2
U1 3
U2 23
PU BOTANICAL SOC AMER INC
PI ST LOUIS
PA PO BOX 299, ST LOUIS, MO 63166-0299 USA
SN 0002-9122
J9 AM J BOT
JI Am. J. Bot.
PD DEC
PY 2012
VL 99
IS 12
BP 1903
EP 1909
DI 10.3732/ajb.1200269
PG 7
WC Plant Sciences
SC Plant Sciences
GA 062VO
UT WOS:000312951600014
PM 23204486
ER
PT J
AU Richardson, BA
Page, JT
Bajgain, P
Sanderson, SC
Udall, JA
AF Richardson, Bryce A.
Page, Justin T.
Bajgain, Prabin
Sanderson, Stewart C.
Udall, Joshua A.
TI DEEP SEQUENCING OF AMPLICONS REVEALS WIDESPREAD INTRASPECIFIC
HYBRIDIZATION AND MULTIPLE ORIGINS OF POLYPLOIDY IN BIG SAGEBRUSH
(ARTEMISIA TRIDENTATA; ASTERACEAE)
SO AMERICAN JOURNAL OF BOTANY
LA English
DT Article
DE Artemesia tridentata; Asteraceae; gene discordance; haplotype
clustering; networks; phylogeny; pyrosequencing; reticulate evolution
ID NARROW HYBRID ZONE; SUBGENUS TRIDENTATAE; PHYLOGENETIC ANALYSIS;
MAXIMUM-LIKELIHOOD; EVOLUTIONARY; SELECTION; AUTOPOLYPLOIDY;
BRASSICACEAE; SPECIATION; ADAPTATION
AB Premise of the study: Hybridization has played an important role in the evolution and ecological adaptation of diploid and polyploid plants. Artemisia tridentata (Asteraceae) tetraploids are extremely widespread and of great ecological importance. These tetraploids are often taxonomically identified as A. tridentata subsp. wyomingensis or as autotetraploids of diploid subspecies tridentata and vaseyana. Few details are available as to how these tetraploids are formed or how they are related to diploid subspecies.
Methods: We used amplicon sequencing to assess phylogenetic relationships among three recognized subspecies: tridentata, vaseyana, and wyomingensis. DNA sequence data from putative genes were pyrosequenced and assembled from 329 samples. Nucleotide diversity and putative haplotypes were estimated from the high-read coverage. Phylogenies were constructed from Bayesian coalescence and neighbor-net network analyses.
Key results: Analyses support distinct diploid subspecies of tridentata and vaseyana in spite of known hybridization in ecotones. Nucleotide diversity estimates of populations compared to the total diversity indicate the relationships are predominately driven by a small proportion of the amplicons. Tetraploids, including subspecies wyomingensis, are polyphyletic occurring within and between diploid subspecies groups.
Conclusions: Artemisia tridentata is a species comprising phylogenetically distinct diploid progenitors and a tetraploid complex with varying degrees of phylogenetic and morphological affinities to the diploid subspecies. These analyses suggest tetraploids are formed locally or regionally from diploid tridentata and vaseyana populations via autotetraploidy, followed by introgression between tetraploid groups. Understanding the phylogenetic vs. ecological relationships of A. tridentata subspecies will have bearing on how to restore these desert ecosystems.
C1 [Richardson, Bryce A.; Sanderson, Stewart C.] US Forest Serv, Rocky Mt Res Stn, USDA, Provo, UT 84606 USA.
[Page, Justin T.; Bajgain, Prabin; Udall, Joshua A.] Brigham Young Univ, Plant & Wildlife Sci Dept, Provo, UT 84602 USA.
[Bajgain, Prabin] Univ Minnesota, Dept Agron & Plant Genet, St Paul, MN 55108 USA.
RP Richardson, BA (reprint author), US Forest Serv, Rocky Mt Res Stn, USDA, Provo, UT 84606 USA.
EM brichardson02@fs.fed.us
FU USDA Forest Service, National Fire Plan [2012-NFP-GSD-1]; BYU Mentored
Environment Grant; Great Basin Native Plant Selection and Increase
Project (GBNPSIP)
FX The authors thank the numerous volunteers from several state and federal
agencies that assisted in collection of plant materials and Drs. E. D.
McArthur and K. E. Mock for their thoughtful review of this manuscript.
This research was funded by USDA Forest Service, National Fire Plan
(#2012-NFP-GSD-1), BYU Mentored Environment Grant, and the Great Basin
Native Plant Selection and Increase Project (GBNPSIP).
NR 72
TC 9
Z9 10
U1 3
U2 50
PU BOTANICAL SOC AMER INC
PI ST LOUIS
PA PO BOX 299, ST LOUIS, MO 63166-0299 USA
SN 0002-9122
J9 AM J BOT
JI Am. J. Bot.
PD DEC
PY 2012
VL 99
IS 12
BP 1962
EP 1975
DI 10.3732/ajb.1200373
PG 14
WC Plant Sciences
SC Plant Sciences
GA 062VO
UT WOS:000312951600020
PM 23204489
ER
PT J
AU Espeland, EK
Rice, KJ
AF Espeland, Erin K.
Rice, Kevin J.
TI WITHIN- AND TRANS-GENERATIONAL PLASTICITY AFFECTS THE OPPORTUNITY FOR
SELECTION IN BARBED GOATGRASS (AEGILOPS TRIUNCIALIS)
SO AMERICAN JOURNAL OF BOTANY
LA English
DT Article
DE secondary invasion; serpentine; annual grasslands; canalization;
maternal effects
ID QUANTITATIVE-GENETIC MODEL; TRANSGENERATIONAL PLASTICITY; PHENOTYPIC
PLASTICITY; EVOLVABILITY; ASSIMILATION; CANALIZATION; ENVIRONMENTS;
POPULATIONS; ADAPTATION; RESISTANCE
AB Premise of the study: Environments are composed of selective agents, and environments may also modify the efficacy of these agents. Environments affect the rate of maximum evolutionary change by influencing variation in relative fitness (i.e., the opportunity for selection, or I). Within-and transgenerational plastic environmental responses may affect I, speeding or slowing processes of local adaptation.
Methods: We determined whether environmental factors affected the opportunity for selection (I) in Aegilops triuncialis (barbed goatgrass) by measuring I as a within-and transgenerational plastic response to two maternal glasshouse environments (serpentine/dry and loam/moist). We also determined whether this species' two most common genetic lineages (determined by DNA microsatellite length polymorphism) varied in response to glasshouse treatments.
Key Results: Opportunity for selection was less for plants grown in the dry serpentine environment than for plants grown in the moist loam environment. This response varied between genetic lineages. The east lineage exhibited a within-generation response to the dry serpentine environment. For both seed mass and average seed weight in this lineage, the opportunity for selection was lower in dry serpentine than in moist loam. The west lineage had a transgenerational response to the dry serpentine such that the opportunity for selection for seed number and seed mass was lower for plants produced by mothers grown in dry serpentine than for plants produced by mothers in moist loam.
Conclusions: Phenotypic variation in relative fitness is constrained by the dry serpentine environment, which leads to lower evolvability in this environment. Within-and transgenerational effects of the environment may slow local adaptation to serpentine soils.
C1 [Espeland, Erin K.] USDA ARS, Pest Management Res Unit, Sidney, MT 59270 USA.
[Rice, Kevin J.] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
RP Espeland, EK (reprint author), USDA ARS, Pest Management Res Unit, 1500 N Cent Ave, Sidney, MT 59270 USA.
EM erin.espeland@ars.usda.gov
FU USDA NRI [2005-35320-15314]
FX Neil Milan and John McKay assisted in the design and execution of the
first year's experiment. Harald Meimberg and John McKay provided the
genotypic identity data. This research was supported by a USDA NRI grant
no. 2005-35320-15314 to K. J. Rice. We grateful to B. Jacobs, J. Gaskin,
and two anonymous reviewers for comments on the manuscript. Mention of
trade names or commercial products in this publication is solely for the
purpose of providing specific information and does not imply
recommendation or endorsement by the U.S. Department of Agriculture.
NR 29
TC 10
Z9 10
U1 3
U2 32
PU BOTANICAL SOC AMER INC
PI ST LOUIS
PA PO BOX 299, ST LOUIS, MO 63166-0299 USA
SN 0002-9122
J9 AM J BOT
JI Am. J. Bot.
PD DEC
PY 2012
VL 99
IS 12
BP 2058
EP 2062
DI 10.3732/ajb.1200372
PG 5
WC Plant Sciences
SC Plant Sciences
GA 062VO
UT WOS:000312951600027
PM 23204493
ER
PT J
AU Mathews, KH
McConnell, MJ
AF Mathews, Kenneth H., Jr.
McConnell, Michael J.
TI The Market for US Livestock Feed Proteins
SO APPLIED ECONOMIC PERSPECTIVES AND POLICY
LA English
DT Article
DE Bovine spongiform encephalopathy (BSE); ethanol co-product; feedgrain;
meat and bone meal; soybean; urea; Q13
ID SUBSTITUTION; ELASTICITIES
AB Parameters that characterize markets for livestock feed ingredients and inform an increasing array of policies motivated by a range of environmental, market, and animal disease issues are largely absent from the literature, which necessitates the use of often misleading assumptions in analyses of proposed feed-market policies. Such parameters are derived here from a theoretically consistent, dual translog cost model of U.S. protein and energy feed markets. Own-price elasticities ranged from a relatively inelastic 0.139 for feedgrains to a relatively elastic 0.568 for meat and bone meal (MBM). The cross elasticity for ethanol co-products and oilseed meals (0.168) is larger than the elasticity with co-products and feedgrains (0.024). Higher prices for protein feeds likely result in some substitution of feed grains for some protein (e.g. corn by oilseed meals 0.125), which may also partially account for the relatively small feedgrains cross elasticity. Policies implemented as a result of bovine splongiform encephalopathy adversely affected the share of total costs attributed to MBM, but had a positive effect on oilseed meal cost share.
C1 [Mathews, Kenneth H., Jr.] ERS, USDA, Washington, DC USA.
[McConnell, Michael J.] US Int Trade Commiss, Agr & Fisheries Div, Off Ind, Washington, DC USA.
RP Mathews, KH (reprint author), ERS, USDA, Washington, DC USA.
EM KMathews@ERS.USDA.GOV
NR 40
TC 0
Z9 0
U1 1
U2 16
PU OXFORD UNIV PRESS INC
PI CARY
PA JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA
SN 2040-5790
J9 APPL ECON PERSPECT P
JI Appl. Econ. Perspect. Policy
PD WIN
PY 2012
VL 34
IS 4
BP 555
EP 569
DI 10.1093/aepp/pps030
PG 15
WC Agricultural Economics & Policy; Economics
SC Agriculture; Business & Economics
GA 058AP
UT WOS:000312606700002
ER
PT J
AU Swayne, DE
AF Swayne, David E.
TI Impact of Vaccines and Vaccination on Global Control of Avian Influenza
SO AVIAN DISEASES
LA English
DT Article; Proceedings Paper
CT 8th International Symposium on Avian Influenza
CY APR 01-04, 2012
CL Univ London, Royal Holloway, London, ENGLAND
SP Amer Assoc Avian Pathologists (AAAP), Anim Hlth & Vet Labs Agcy (AHVLA), MSD Anim Hlth, US Dept Agr, Anim & Plant Hlth Inspect Serv, Wildlife Serv, US Dept Agr, Natl Inst Food & Agr, Avian Influenza Coordinated Agr Project (AICAP)
HO Univ London, Royal Holloway
DE avian influenza; highly pathogenic avian influenza; vaccination; vaccine
ID H5N1; VIRUS; POULTRY; STRATEGIES; PROTECTION; EXPERIENCE; INDONESIA;
CHICKENS; BIRDS; ASIA
AB There are 30 recorded epizootics of H5 or H7 high pathogenicity avian influenza (HPAI) from 1959 to early 2012. The largest of these epizootics, affecting more birds and countries than the other 29 epizootics combined, has been the H5N1 HPAI, which began in Guangdong China in 1996, and has killed or resulted in culling of over 250 million poultry and/or wild birds in 63 countries. Most countries have used stamping-out programs in poultry to eradicate H5N1 HPAI. However, 15 affected countries have utilized vaccination as a part of the control strategy. Greater than 113 billion doses were used from 2002 to 2010. Five countries have utilized nationwide routine vaccination programs, which account for 99% of vaccine used: 1) China (90.9%), 2) Egypt (4.6%), 3) Indonesia (2.3%), 4) Vietnam (1.4%), and 5) Hong Kong Special Administrative Region (<0.01%). Mongolia, Kazakhstan, France, The Netherlands, Cote d'Ivoire, Sudan, North Korea, Israel, Russia, and Pakistan used <1% of the avian influenza (AI) vaccine, and the AI vaccine was targeted to either preventive or emergency vaccination programs. Inactivated AI vaccines have accounted for 95.5% of vaccine used, and live recombinant virus vaccines have accounted for 4.5% of vaccine used. The latter are primarily recombinant Newcastle disease vectored vaccine with H5 influenza gene insert. China, Indonesia, Egypt, and Vietnam implemented vaccination after H5N1 HPAI became enzootic in domestic poultry. Bangladesh and eastern India have enzootic H5N1 HPAI and have not used vaccination in their control programs. Clinical disease and mortality have been prevented in chickens, human cases have been reduced, and rural livelihoods and food security have been maintained by using vaccines during HPAI outbreaks. However, field outbreaks have occurred in vaccinating countries, primarily because of inadequate coverage in the target species, but vaccine failures have occurred following antigenic drift in field viruses within China, Egypt, Indonesia, Hong Kong, and Vietnam. The primary strategy for HPAI and H5/H7 low pathogenicity notifiable avian influenza control will continue to be immediate eradication using a four-component strategy: 1) education, 2) biosecurity, 3) rapid diagnostics and surveillance, and 4) elimination of infected poultry. Under some circumstances, vaccination can be added as an additional tool within a wider control strategy when immediate eradication is not feasible, which will maintain livelihoods and food security, and control clinical disease until a primary strategy can be developed and implemented to achieve eradication.
C1 USDA, ARS, OIE Collaborating Ctr Res Emerging Avian Dis, SE Poultry Res Lab, Athens, GA 30605 USA.
RP Swayne, DE (reprint author), USDA, ARS, OIE Collaborating Ctr Res Emerging Avian Dis, SE Poultry Res Lab, 934 Coll Stn Rd, Athens, GA 30605 USA.
EM David.Swayne@ars.usda.gov
NR 33
TC 44
Z9 46
U1 4
U2 43
PU AMER ASSOC AVIAN PATHOLOGISTS
PI ATHENS
PA 953 COLLEGE STATION RD, ATHENS, GA 30602-4875 USA
SN 0005-2086
J9 AVIAN DIS
JI Avian Dis.
PD DEC
PY 2012
VL 56
IS 4
SU S
BP 818
EP 828
PG 11
WC Veterinary Sciences
SC Veterinary Sciences
GA 065GJ
UT WOS:000313136200003
PM 23402099
ER
PT J
AU Suarez, DL
AF Suarez, David L.
TI DIVA Vaccination Strategies for Avian Influenza Virus
SO AVIAN DISEASES
LA English
DT Article; Proceedings Paper
CT 8th International Symposium on Avian Influenza
CY APR 01-04, 2012
CL Univ London, Royal Holloway, London, ENGLAND
SP Amer Assoc Avian Pathologists (AAAP), Anim Hlth & Vet Labs Agcy (AHVLA), MSD Anim Hlth, US Dept Agr, Anim & Plant Hlth Inspect Serv, Wildlife Serv, US Dept Agr, Natl Inst Food & Agr, Avian Influenza Coordinated Agr Project (AICAP)
HO Univ London, Royal Holloway
DE avian influenza; DIVA; vaccination; marker vaccine; trade; highly
pathogenic
ID LINKED-IMMUNOSORBENT-ASSAY; NONSTRUCTURAL PROTEIN NS1; HETEROLOGOUS
NEURAMINIDASE; INFECTED CHICKENS; ANIMALS DIVA; A VIRUS;
NEWCASTLE-DISEASE; INHIBITION TEST; ANTIBODIES; DIFFERENTIATION
AB Vaccination for both low pathogenicity avian influenza and highly pathogenic avian influenza is commonly used by countries that have become endemic for avian influenza virus, but stamping-out policies are still common for countries with recently introduced disease. Stamping-out policies of euthanatizing infected and at-risk flocks has been an effective control tool, but it comes at a high social and economic cost. Efforts to identify alternative ways to respond to outbreaks without widespread stamping out has become a goal for organizations like the World Organisation for Animal Health. A major issue with vaccination for avian influenza is trade considerations because countries that vaccinate are often considered to be endemic for the disease and they typically lose their export markets. Primarily as a tool to promote trade, the concept of DIVA (differentiate infected from vaccinated animals) has been considered for avian influenza, but the goal for trade is to differentiate vaccinated and not-infected from vaccinated and infected animals because trading partners are unwilling to accept infected birds. Several different strategies have been investigated for a DIVA strategy, but each has advantages and disadvantages. A review of current knowledge on the research and implementation of the DIVA strategy will be discussed with possible ways to implement this strategy in the field. The increased desire for a workable DIVA strategy may lead to one of these ideas moving from the experimental to the practical.
C1 USDA ARS, SE Poultry Res Lab, Athens, GA 30605 USA.
RP Suarez, DL (reprint author), USDA ARS, SE Poultry Res Lab, 934 Coll Stn Rd, Athens, GA 30605 USA.
EM david.suarez@ars.usda.gov
NR 64
TC 11
Z9 13
U1 1
U2 13
PU AMER ASSOC AVIAN PATHOLOGISTS
PI ATHENS
PA 953 COLLEGE STATION RD, ATHENS, GA 30602-4875 USA
SN 0005-2086
J9 AVIAN DIS
JI Avian Dis.
PD DEC
PY 2012
VL 56
IS 4
SU S
BP 836
EP 844
PG 9
WC Veterinary Sciences
SC Veterinary Sciences
GA 065GJ
UT WOS:000313136200005
PM 23402101
ER
PT J
AU Pasick, J
Pedersen, J
Hernandez, MS
AF Pasick, John
Pedersen, Janice
Solis Hernandez, Mario
TI Avian Influenza in North America, 2009-2011
SO AVIAN DISEASES
LA English
DT Article; Proceedings Paper
CT 8th International Symposium on Avian Influenza
CY APR 01-04, 2012
CL Univ London, Royal Holloway, London, ENGLAND
SP Amer Assoc Avian Pathologists (AAAP), Anim Hlth & Vet Labs Agcy (AHVLA), MSD Anim Hlth, US Dept Agr, Anim & Plant Hlth Inspect Serv, Wildlife Serv, US Dept Agr, Natl Inst Food & Agr, Avian Influenza Coordinated Agr Project (AICAP)
HO Univ London, Royal Holloway
DE avian influenza; low pathogenic notifiable avian influenza;
surveillance; live bird markets
ID VIRUSES
AB All reports of avian influenza virus infections in poultry and isolations from wild bird species in Canada, the United States, and Mexico between 2009 and 2011 involved low pathogenic avian influenza. All three countries reported outbreaks of low pathogenic notifiable avian influenza in poultry during this period. The reports involved outbreaks of H5N2 among commercial turkeys in Canada in 2009 and 2010; outbreaks of H5N3 in turkeys in 2009, H5N2 in chickens in 2010, H7N3 in turkeys in 2011, and H7N9 in chickens, turkeys, geese, and guinea fowl in 2011 in the United States; and multiple outbreaks of H5N2 in chickens in Mexico in 2009, 2010, and 2011. Outbreaks of pandemic H1N1 infections in turkey breeder flocks were reported in Canada in 2009 and in the United States in 2010. Active surveillance of live bird markets in the United States led to the detection of H2, H3, H4, H5, H6, and H10 subtypes. Despite the fact that wild bird surveillance programs underwent contraction during this period in both Canada and the United States, H5 and H7 subtypes were still detected.
C1 [Pasick, John] Canadian Food Inspect Agcy, Natl Ctr Foreign Anim Dis, Winnipeg, MB R3E 3M4, Canada.
[Pedersen, Janice] USDA, Anim & Plant Hlth Inspect Serv, Natl Vet Serv Labs, Ames, IA 50010 USA.
[Solis Hernandez, Mario] CPA Gen Directorate Anim Hlth, Serv Natl Sanidad Inocuidad & Calidad Agroaliment, Colonia Palo Alto, Delegacion Cuaj, Mexico.
RP Pasick, J (reprint author), Canadian Food Inspect Agcy, Natl Ctr Foreign Anim Dis, 1015 Arlington St, Winnipeg, MB R3E 3M4, Canada.
EM John.Pasick@inspection.gc.ca
NR 3
TC 21
Z9 23
U1 0
U2 83
PU AMER ASSOC AVIAN PATHOLOGISTS
PI ATHENS
PA 953 COLLEGE STATION RD, ATHENS, GA 30602-4875 USA
SN 0005-2086
J9 AVIAN DIS
JI Avian Dis.
PD DEC
PY 2012
VL 56
IS 4
SU S
BP 845
EP 848
PG 4
WC Veterinary Sciences
SC Veterinary Sciences
GA 065GJ
UT WOS:000313136200006
PM 23402102
ER
PT J
AU Malladi, S
Weaver, JT
Goldsmith, T
Hueston, W
Voss, S
Funk, J
Der, C
Bjork, KE
Clouse, TL
Hennessey, M
Sampedro, F
Lee, B
Halvorson, DA
AF Malladi, Sasidhar
Weaver, J. Todd
Goldsmith, Timothy
Hueston, William
Voss, Shauna
Funk, Janel
Der, Christina
Bjork, Kathe E.
Clouse, Timothy L.
Hennessey, Morgan
Sampedro, Fernando
Lee, Brendan
Halvorson, David A.
TI The Impact of Holding Time on the Likelihood of Moving Internally
Contaminated Eggs from a Highly Pathogenic Avian Influenza Infected but
Undetected Commercial Table-Egg Layer Flock
SO AVIAN DISEASES
LA English
DT Article; Proceedings Paper
CT 8th International Symposium on Avian Influenza
CY APR 01-04, 2012
CL Univ London, Royal Holloway, London, ENGLAND
SP Amer Assoc Avian Pathologists (AAAP), Anim Hlth & Vet Labs Agcy (AHVLA), MSD Anim Hlth, US Dept Agr, Anim & Plant Hlth Inspect Serv, Wildlife Serv, US Dept Agr, Natl Inst Food & Agr, Avian Influenza Coordinated Agr Project (AICAP)
HO Univ London, Royal Holloway
DE egg production; risk assessment; surveillance; highly pathogenic avian
influenza; egg layers; food security
ID VIRUS H5N1; HONG-KONG; CHICKENS; RISK; TRANSMISSION; H7N7; NETHERLANDS;
MORTALITY; EPIDEMIC; DYNAMICS
AB Emergency response during a highly pathogenic avian influenza (HPAI) outbreak may involve quarantine and movement controls for poultry products such as eggs. However, such disease control measures may disrupt business continuity and impact food security, since egg production facilities often do not have sufficient capacity to store eggs for prolonged periods. We propose the incorporation of a holding time before egg movement in conjunction with targeted active surveillance as a novel approach to move eggs from flocks within a control area with a low likelihood of them being contaminated with HPAI virus. Holding time reduces the likelihood of HPAI-contaminated eggs being moved from a farm before HPAI infection is detected in the flock. We used a stochastic disease transmission model to estimate the HPAI disease prevalence, disease mortality, and fraction of internally contaminated eggs at various time points postinfection of a commercial table-egg layer flock. The transmission model results were then used in a simulation model of a targeted matrix gene real-time reverse transcriptase (RRT)-PCR testing based surveillance protocol to estimate the time to detection and the number of contaminated eggs moved under different holding times. Our simulation results indicate a significant reduction in the number of internally contaminated eggs moved from an HPAI-infected undetected flock with each additional day of holding time. Incorporation of a holding time and the use of targeted surveillance have been adopted by the U.S. Department of Agriculture in their Draft Secure Egg Supply Plan for movement of egg industry products during an HPAI outbreak.
C1 [Malladi, Sasidhar; Goldsmith, Timothy; Hueston, William; Voss, Shauna; Der, Christina; Hennessey, Morgan; Sampedro, Fernando; Lee, Brendan; Halvorson, David A.] Univ Minnesota, Ctr Anim Hlth & Food Safety, St Paul, MN 55108 USA.
[Malladi, Sasidhar; Weaver, J. Todd; Funk, Janel; Bjork, Kathe E.; Clouse, Timothy L.] USDA, Anim & Plant Hlth Inspect Serv, Vet Serv, Ctr Epidemiol, Ft Collins, CO 80526 USA.
[Malladi, Sasidhar; Weaver, J. Todd; Funk, Janel; Bjork, Kathe E.; Clouse, Timothy L.] USDA, Ctr Anim Hlth, Ctr Anim Hlth Informat & Anal, Nat Resource Res Ctr, Ft Collins, CO 80526 USA.
RP Malladi, S (reprint author), USDA, Anim & Plant Hlth Inspect Serv, Vet Serv, Ctr Epidemiol, Bldg B MS 2W4,2150 Ctr Ave, Ft Collins, CO 80526 USA.
EM malla042@umn.edu
NR 31
TC 2
Z9 2
U1 0
U2 3
PU AMER ASSOC AVIAN PATHOLOGISTS
PI ATHENS
PA 953 COLLEGE STATION RD, ATHENS, GA 30602-4875 USA
SN 0005-2086
J9 AVIAN DIS
JI Avian Dis.
PD DEC
PY 2012
VL 56
IS 4
SU S
BP 897
EP 904
PG 8
WC Veterinary Sciences
SC Veterinary Sciences
GA 065GJ
UT WOS:000313136200014
PM 23402110
ER
PT J
AU Weaver, JT
Malladi, S
Goldsmith, TJ
Hueston, W
Hennessey, M
Lee, B
Voss, S
Funk, J
Der, C
Bjork, KE
Clouse, TL
Halvorson, DA
AF Weaver, J. Todd
Malladi, Sasidhar
Goldsmith, Timothy J.
Hueston, Will
Hennessey, Morgan
Lee, Brendan
Voss, Shauna
Funk, Jane
Der, Christina
Bjork, Kathe E.
Clouse, Timothy L.
Halvorson, David A.
TI Impact of Virus Strain Characteristics on Early Detection of Highly
Pathogenic Avian Influenza Infection in Commercial Table-Egg Layer
Flocks and Implications for Outbreak Control
SO AVIAN DISEASES
LA English
DT Article; Proceedings Paper
CT 8th International Symposium on Avian Influenza
CY APR 01-04, 2012
CL Univ London, Royal Holloway, London, ENGLAND
SP Amer Assoc Avian Pathologists (AAAP), Anim Hlth & Vet Labs Agcy (AHVLA), MSD Anim Hlth, US Dept Agr, Anim & Plant Hlth Inspect Serv, Wildlife Serv, US Dept Agr, Natl Inst Food & Agr, Avian Influenza Coordinated Agr Project (AICAP)
HO Univ London, Royal Holloway
DE egg production; risk assessment; surveillance; highly pathogenic avian
influenza; egg-layers
ID H7N7 VIRUS; TRANSMISSION; CHICKENS; H5N1; NETHERLANDS; EPIDEMIC;
VACCINATION
AB Early detection of highly pathogenic avian influenza (HPAI) infection in commercial poultry flocks is a critical component of outbreak control. Reducing the time to detect HPAI infection can reduce the risk of disease transmission to other flocks. The timeliness of different types of detection triggers could be dependent on clinical signs that are first observed in a flock, signs that might vary due to HPAI virus strain characteristics. We developed a stochastic disease transmission model to evaluate how transmission characteristics of various HPAI strains might effect the relative importance of increased mortality, drop in egg production, or daily real-time reverse transcriptase (RRT)-PCR testing, toward detecting HPAI infection in a commercial table-egg layer flock. On average, daily RRT-PCR testing resulted in the shortest time to detection (from 3.5 to 6.1 days) depending on the HPAI virus strain and was less variable over a range of transmission parameters compared with other triggers evaluated. Our results indicate that a trigger to detect a drop in egg production would be useful for HPAI virus strains with long infectious periods (6-8 days) and including an egg-drop detection trigger in emergency response plans would lead to earlier and consistent reporting in some cases. We discuss implications for outbreak control and risk of HPAI spread attributed to different HPAI strain characteristics where an increase in mortality or a drop in egg production or both would be among the first clinical signs observed in an infected flock.
C1 [Weaver, J. Todd; Funk, Jane; Der, Christina; Bjork, Kathe E.; Clouse, Timothy L.] USDA, Anim & Plant Hlth Inspect Serv, Vet Serv, Ctr Epidemiol, Ft Collins, CO 80526 USA.
[Weaver, J. Todd; Funk, Jane; Der, Christina; Bjork, Kathe E.; Clouse, Timothy L.] USDA, Ctr Anim Hlth, Ctr Anim Hlth Informat & Anal, Nat Resource Res Ctr, Ft Collins, CO 80526 USA.
[Malladi, Sasidhar; Goldsmith, Timothy J.; Hueston, Will; Hennessey, Morgan; Lee, Brendan; Voss, Shauna; Halvorson, David A.] Univ Minnesota, Ctr Anim Hlth & Food Safety, St Paul, MN 55108 USA.
RP Weaver, JT (reprint author), USDA, Anim & Plant Hlth Inspect Serv, Vet Serv, Ctr Epidemiol, Bldg B MS 2W4,2150 Ctr Ave, Ft Collins, CO 80526 USA.
EM todd.weaver@aphis.usda.gov
NR 29
TC 5
Z9 5
U1 0
U2 2
PU AMER ASSOC AVIAN PATHOLOGISTS
PI ATHENS
PA 953 COLLEGE STATION RD, ATHENS, GA 30602-4875 USA
SN 0005-2086
J9 AVIAN DIS
JI Avian Dis.
PD DEC
PY 2012
VL 56
IS 4
SU S
BP 905
EP 912
PG 8
WC Veterinary Sciences
SC Veterinary Sciences
GA 065GJ
UT WOS:000313136200015
PM 23402111
ER
PT J
AU Brown, J
Poulson, R
Carter, D
Lebarbenchon, C
Pantin-Jackwood, M
Spackman, E
Shepherd, E
Killian, M
Stallknecht, D
AF Brown, Justin
Poulson, Rebecca
Carter, Deborah
Lebarbenchon, Camille
Pantin-Jackwood, Mary
Spackman, Erica
Shepherd, Eric
Killian, Mary
Stallknecht, David
TI Susceptibility of Avian Species to North American H13 Low Pathogenic
Avian Influenza Viruses
SO AVIAN DISEASES
LA English
DT Article; Proceedings Paper
CT 8th International Symposium on Avian Influenza
CY APR 01-04, 2012
CL Univ London, Royal Holloway, London, ENGLAND
SP Amer Assoc Avian Pathologists (AAAP), Anim Hlth & Vet Labs Agcy (AHVLA), MSD Anim Hlth, US Dept Agr, Anim & Plant Hlth Inspect Serv, Wildlife Serv, US Dept Agr, Natl Inst Food & Agr, Avian Influenza Coordinated Agr Project (AICAP)
HO Univ London, Royal Holloway
DE avian influenza; chickens; gulls; H13; mallards; poultry; turkeys
ID A VIRUSES; WILD BIRDS; SURFACE-WATER; TURKEYS; DUCKS; SURVEILLANCE;
SHOREBIRDS; PATTERNS; CHAIN; GULLS
AB Gulls are widely recognized reservoirs for low pathogenic avian influenza (LPAI) viruses; however, the subtypes maintained in these populations and/or the transmission mechanisms involved are poorly understood. Although, a wide diversity of influenza viruses have been isolated from gulls, two hemagglutinin subtypes (H13 and H16) are rarely detected in other avian groups, and existing surveillance data suggests they are maintained almost exclusively within gull populations. In order to evaluate the host range of these gull-adapted influenza subtypes and to characterize viral infection in the gull host, we conducted a series of challenge experiments, with multiple North American strains of H13 LPAI virus in ring-billed gulls (Larus delawarensis), mallards (Anas platyrhynchos), chickens (Gallus domesticus), and turkeys (Meleagris gallopavo). The susceptibility to H13 LPAI viruses varied between species and viral strain. Gulls were highly susceptible to H13 LPAI virus infection and excreted virus via the oropharynx and cloaca for several days. The quantity and duration of shedding was similar between the two routes. Turkeys and ducks were resistant to infection with most strains of H13 LPAI virus, but low numbers of inoculated birds were infected after challenge with specific viral strains. Chickens were refractory to infection with all strains of H13 LPAI virus they were challenged with. The experimental results presented herein are consistent with existing surveillance data on H13 LPAI viruses in birds, and indicate that influenza viruses of the H13 subtype are strongly host-adapted to gulls, but rare spill-over into aberrant hosts (i.e., turkeys and ducks) can occur.
C1 [Brown, Justin; Poulson, Rebecca; Carter, Deborah; Lebarbenchon, Camille; Stallknecht, David] Univ Georgia, Coll Vet Med, Dept Populat Hlth, Athens, GA 30602 USA.
[Pantin-Jackwood, Mary; Spackman, Erica; Shepherd, Eric] USDA ARS, SE Poultry Res Lab, Athens, GA 30605 USA.
[Killian, Mary] USDA APHIS, Natl Vet Serv Lab, Ames, IA 50010 USA.
RP Brown, J (reprint author), Univ Georgia, Coll Vet Med, Dept Populat Hlth, Athens, GA 30602 USA.
EM jubrown1@uga.edu
RI Lebarbenchon, Camille/H-7245-2013
OI Lebarbenchon, Camille/0000-0002-0922-7573
NR 26
TC 12
Z9 12
U1 0
U2 14
PU AMER ASSOC AVIAN PATHOLOGISTS
PI ATHENS
PA 953 COLLEGE STATION RD, ATHENS, GA 30602-4875 USA
SN 0005-2086
J9 AVIAN DIS
JI Avian Dis.
PD DEC
PY 2012
VL 56
IS 4
SU S
BP 969
EP 975
PG 7
WC Veterinary Sciences
SC Veterinary Sciences
GA 065GJ
UT WOS:000313136200025
PM 23402121
ER
PT J
AU Hjulsager, CK
Breum, SO
Trebbien, R
Handberg, KJ
Therkildsen, OR
Madsen, JJ
Thorup, K
Baroch, JA
DeLiberto, TJ
Larsen, LE
Jorgensen, PH
AF Hjulsager, Charlotte Kristiane
Breum, Solvej Ostergaard
Trebbien, Ramona
Handberg, Kurt Jensen
Therkildsen, Ole Roland
Madsen, Jesper Johannes
Thorup, Kasper
Baroch, John A.
DeLiberto, Thomas J.
Larsen, Lars Erik
Jorgensen, Poul Henrik
TI Surveillance for Avian Influenza Viruses in Wild Birds in Denmark and
Greenland, 2007-10
SO AVIAN DISEASES
LA English
DT Article; Proceedings Paper
CT 8th International Symposium on Avian Influenza
CY APR 01-04, 2012
CL Univ London, Royal Holloway, London, ENGLAND
SP Amer Assoc Avian Pathologists, Anim Hlth & Vet Labs Agcy, MSD Anim Hlth, US Dept Agr, Anim & Plant Hlth Inspect Serv, Wildlife Serv, US Dept Agr, Natl Inst Food & Agr, Avian Influenza Coordinated Agr Project
HO Univ London, Royal Holloway
DE avian influenza virus; wild birds; surveillance; Denmark; Greenland
ID A VIRUS; SUBTYPE COMBINATION; EUROPE; TRANSMISSION; AFRICA; DUCKS; ASIA
AB In Denmark and Greenland, extensive surveillance of avian influenza (AI) viruses in wild bird populations has been conducted from 2007 through 2010. In Denmark, the surveillance consisted of passive surveillance of wild birds found dead or sick across Denmark and active surveillance of apparently healthy live birds in waterfowl reservoirs and along migratory flyways, birds living in proximity to domestic poultry, and hunted game birds. Dead birds were sampled by oropharyngeal swabbing. Healthy live wild birds were captured with nets, traps, or by hand and were sampled by swabbing of the oropharyngeal and cloacal tracts, or swabs were collected from fresh fecal droppings. Hunted game birds were delivered to game-handling establishments, where each bird was sampled by oropharyngeal and cloacal swabbing. During the 2007-10 period, a total of 11,055 wild birds were sampled in Denmark, of which 396 were birds that were found dead. In Greenland, samples were collected mainly from fecal droppings in breeding areas. Samples from 3555 live and apparently healthy wild birds were tested. All swab samples were tested by pan-influenza reverse transcriptase PCR (RT-PCR), and the positive samples were further tested by H5/H7 specific RT-PCRs. H5/H7-positive samples were subjected to hemagglutination cleavage site sequencing for pathotyping. In addition, all RT-PCR positive samples were subjected to virus isolation, and the virus isolates were subsequently subtyped. In Denmark, low pathogenic (LP) H5 viruses were detected throughout the period, in addition to a few LPAI H7 and several other subtypes. In Greenland, very few samples were positive for AI. None of them were found to be of the H5 or H7 subtypes by RT-PCR. Isolation of these viruses in eggs was unsuccessful; thus, they were not subtyped further. The findings did, however, demonstrate the presence of LPAI viruses in Greenland. For several water bird species overwintering in North America and northwest Europe, respectively, Greenland constitutes a common breeding area. This raises the possibility that viruses could be transmitted to North America via Greenland and vice versa. In Denmark, the screenings for AT showed LPAI viruses to be naturally occurring in the wild bird population, particularly in waterfowl. The occurrence of AI viruses in the wild bird population may pose a risk for AI infections in Danish poultry.
C1 [Hjulsager, Charlotte Kristiane; Breum, Solvej Ostergaard; Trebbien, Ramona; Larsen, Lars Erik; Jorgensen, Poul Henrik] Tech Univ Denmark, Natl Vet Inst, DK-1790 Copenhagen V, Denmark.
[Handberg, Kurt Jensen] Aarhus Univ Hosp, Dept Clin Microbiol, DK-8200 Aarhus N, Denmark.
[Therkildsen, Ole Roland] Aarhus Univ, Dept Biosci, DK-8410 Ronde, Denmark.
[Madsen, Jesper Johannes; Thorup, Kasper] Univ Copenhagen, Nat Hist Museum Denmark, DK-2100 Copenhagen O, Denmark.
[Baroch, John A.; DeLiberto, Thomas J.] USDA, Anim & Plant Hlth Inspect Serv, Wildlife Serv, Natl Wildlife Dis Program, Ft Collins, CO 80521 USA.
RP Hjulsager, CK (reprint author), Tech Univ Denmark, Natl Vet Inst, Bulowsvej 27, DK-1790 Copenhagen V, Denmark.
EM ckhj@vet.dtu.dk
RI Thorup, Kasper/A-4835-2013; Therkildsen, Ole Roland/I-7953-2013
OI Thorup, Kasper/0000-0002-0320-0601; Therkildsen, Ole
Roland/0000-0002-7493-9809
NR 16
TC 2
Z9 2
U1 1
U2 15
PU AMER ASSOC AVIAN PATHOLOGISTS
PI ATHENS
PA 953 COLLEGE STATION RD, ATHENS, GA 30602-4875 USA
SN 0005-2086
EI 1938-4351
J9 AVIAN DIS
JI Avian Dis.
PD DEC
PY 2012
VL 56
IS 4
SU S
BP 992
EP 998
PG 7
WC Veterinary Sciences
SC Veterinary Sciences
GA 065GJ
UT WOS:000313136200029
ER
PT J
AU Muzyka, D
Pantin-Jackwood, M
Spackman, E
Stegniy, B
Rula, O
Shutchenko, P
AF Muzyka, Denys
Pantin-Jackwood, Mary
Spackman, Erica
Stegniy, Borys
Rula, Oleksandr
Shutchenko, Pavlo
TI Avian Influenza Virus Wild Bird Surveillance in the Azov and Black Sea
Regions of Ukraine (2010-2011)
SO AVIAN DISEASES
LA English
DT Article; Proceedings Paper
CT 8th International Symposium on Avian Influenza
CY APR 01-04, 2012
CL Univ London, Royal Holloway, London, ENGLAND
SP Amer Assoc Avian Pathologists (AAAP), Anim Hlth & Vet Labs Agcy (AHVLA), MSD Anim Hlth, US Dept Agr, Anim & Plant Hlth Inspect Serv, Wildlife Serv, US Dept Agr, Natl Inst Food & Agr, Avian Influenza Coordinated Agr Project (AICAP)
HO Univ London, Royal Holloway
DE avian influenza; avian influenza virus; surveillance; wild birds; Crimea
ID MIGRATORY WATERFOWL; OUTBREAK
AB The Azov and Black Sea basins are part of the transcontinental wild bird migration routes from Northern Asia and Europe to the Mediterranean, Africa, and Southwest Asia. These regions constitute an area of transit, stops during migration, and nesting for many different bird species. From September 2010 to September 2011,a wild bird surveillance study was conducted in these regions to identify avian influenza viruses. Biological samples consisting of cloacal and tracheal swabs and fecal samples were collected from wild birds of different ecological groups, including waterfowl and sea- and land-based birds, in places of mass bird accumulations in Sivash Bay and the Utlyuksky and Molochniy estuaries. The sampling covered the following wild bird biological cycles: autumn migration, wintering, spring migration, nesting, and postnesting seasons. A total of 3634 samples were collected from 66 different species of birds. During the autumn migration, 19 hemagglutinating viruses were isolated, 14 of which were identified as low pathogenicity avian influenza (LPAI) virus subtypes H1N?, H3N8, H5N2, H7N?, H8N4, H10N7, and H11N8. From the wintering samples, 45 hemagglutinating viruses were isolated, 36 of which were identified as LPAI virus subtypes H1N I, H1N? H1N2, H4N?, H6N1, H7N3, H7N6, H7N7, H8N2, H9N2, H10N7, H10N4, H11N2, H12N2, and H15N7. Only three viruses were isolated during the spring migration, nesting, and postnesting seasons (serotypes H6, H13, and H16). The HA and NA genes were sequenced from the isolated H5 and NI viruses, and the phylogenetic analysis revealed possible ecological connections between the Azov and Black Sea regions and Europe. The LPAI viruses were isolated mostly from mallard ducks, but also from shellducks, shovelers, teals, and white-fronted geese. The rest of the 14 hemagglutinating viruses isolated were identified as different serotypes of avian paramyxoviruses (APMV-1, APMV-4, APMV-6, and APMV-7). This information furthers our understanding of the ecology of avian influenza viruses in wild bird species.
C1 [Muzyka, Denys; Stegniy, Borys; Rula, Oleksandr; Shutchenko, Pavlo] Ctr Nat Sci, Inst Expt & Clin Vet Med, UA-61023 Kharkov, Ukraine.
[Pantin-Jackwood, Mary; Spackman, Erica] USDA ARS, SE Poultry Res Lab, Athens, GA 30605 USA.
RP Muzyka, D (reprint author), Ctr Nat Sci, Inst Expt & Clin Vet Med, UA-61023 Kharkov, Ukraine.
EM dmuzyka77@gmail.com
NR 17
TC 9
Z9 9
U1 3
U2 16
PU AMER ASSOC AVIAN PATHOLOGISTS
PI ATHENS
PA 953 COLLEGE STATION RD, ATHENS, GA 30602-4875 USA
SN 0005-2086
J9 AVIAN DIS
JI Avian Dis.
PD DEC
PY 2012
VL 56
IS 4
SU S
BP 1010
EP 1016
PG 7
WC Veterinary Sciences
SC Veterinary Sciences
GA 065GJ
UT WOS:000313136200032
PM 23402128
ER
PT J
AU Groffman, PM
Rustad, LE
Templer, PH
Campbell, JL
Christenson, LM
Lany, NK
Socci, AM
Vadeboncoeur, MA
Schaberg, PG
Wilson, GF
Driscoll, CT
Fahey, TJ
Fisk, MC
Goodale, CL
Green, MB
Hamburg, SP
Johnson, CE
Mitchell, MJ
Morse, JL
Pardo, LH
Rodenhouse, NL
AF Groffman, Peter M.
Rustad, Lindsey E.
Templer, Pamela H.
Campbell, John L.
Christenson, Lynn M.
Lany, Nina K.
Socci, Anne M.
Vadeboncoeur, Matthew A.
Schaberg, Paul G.
Wilson, Geoffrey F.
Driscoll, Charles T.
Fahey, Timothy J.
Fisk, Melany C.
Goodale, Christine L.
Green, Mark B.
Hamburg, Steven P.
Johnson, Chris E.
Mitchell, Myron J.
Morse, Jennifer L.
Pardo, Linda H.
Rodenhouse, Nicholas L.
TI Long-Term Integrated Studies Show Complex and Surprising Effects of
Climate Change in the Northern Hardwood Forest
SO BIOSCIENCE
LA English
DT Article
DE climate change; forests; long-term studies; northeastern United States;
winter
ID NORTHEASTERN UNITED-STATES; WHITE-TAILED DEER;
BROOK-EXPERIMENTAL-FOREST; HUBBARD-BROOK; NEW-HAMPSHIRE; SUGAR MAPLE;
TEMPERATE FOREST; CARBON DYNAMICS; FUTURE CHANGES; WARMER WORLD
AB Evaluations of the local effects of global change are often confounded by the interactions of natural and anthropogenic factors that overshadow the effects of climate changes on ecosystems. Long-term watershed and natural elevation gradient studies at the Hubbard Brook Experimental Forest and in the surrounding region show surprising results demonstrating the effects of climate change on hydrologic variables (e.g., evapotranspiration, streamflow, soil moisture); the importance of changes in phenology on water, carbon, and nitrogen fluxes during critical seasonal transition periods; winter climate change effects on plant and animal community composition and ecosystem services; and the effects of anthropogenic disturbances and land-use history on plant community composition. These studies highlight the value of long-term integrated research for assessments of the subtle effects of changing climate on complex ecosystems.
C1 [Groffman, Peter M.; Morse, Jennifer L.] Cary Inst Ecosyst Studies, Millbrook, NY 12545 USA.
[Rustad, Lindsey E.; Campbell, John L.; Green, Mark B.] US Forest Serv, USDA, No Res Stn, Durham, NH USA.
[Templer, Pamela H.; Socci, Anne M.] Boston Univ, Dept Biol, Boston, MA 02215 USA.
[Christenson, Lynn M.] Vassar Coll, Dept Biol, Poughkeepsie, NY 12601 USA.
[Lany, Nina K.] Dartmouth Coll, Dept Biol Sci, Hanover, NH 03755 USA.
[Vadeboncoeur, Matthew A.] Univ New Hampshire, Inst Study Earth Oceans & Space, Complex Syst Res Ctr, Durham, NH 03824 USA.
[Schaberg, Paul G.; Pardo, Linda H.] US Forest Serv, USDA, No Res Stn, Burlington, VT USA.
[Wilson, Geoffrey F.] Hubbard Brook Res Fdn, Thornton, NH USA.
[Driscoll, Charles T.; Johnson, Chris E.] Syracuse Univ, Dept Civil & Environm Engn, Syracuse, NY 13244 USA.
[Fahey, Timothy J.] Cornell Univ, Dept Nat Resources, Ithaca, NY 14853 USA.
[Fisk, Melany C.] Miami Univ, Dept Zool, Oxford, OH 45056 USA.
[Goodale, Christine L.] Cornell Univ, Dept Ecol & Evolutionary Biol, Ithaca, NY USA.
[Green, Mark B.] Plymouth State Univ, Ctr Environm, Plymouth, NH USA.
[Hamburg, Steven P.] Environm Def Fund, Boston, MA USA.
[Mitchell, Myron J.] SUNY Syracuse, Coll Environm Sci & Forestry, Syracuse, NY 13210 USA.
[Rodenhouse, Nicholas L.] Wellesley Coll, Dept Biol Sci, Wellesley, MA 02181 USA.
RP Groffman, PM (reprint author), Cary Inst Ecosyst Studies, Millbrook, NY 12545 USA.
EM groffmanp@caryinstitute.org
RI Johnson, Chris/A-6979-2011; Driscoll, Charles/F-9832-2014;
OI Johnson, Chris/0000-0001-9079-813X; Campbell, John/0000-0003-4956-1696;
Green, Mark/0000-0002-7415-7209; Vadeboncoeur,
Matthew/0000-0002-8269-0708; Driscoll, Charles/0000-0003-2692-2890;
Morse, Jennifer/0000-0001-8872-4940
FU National Science Foundation [DEB 04-23259]
FX This research was supported by grants from the National Science
Foundation, primarily grant no. DEB 04-23259 to the Hubbard Brook Long
Term Ecological Research Network site. The Hubbard Brook Experimental
Forest is operated by the Northern Research Station of the US Department
of Agriculture Forest Service, in Newtown Square, Pennsylvania, and is a
Long Term Ecological Research Network site. This article is a
contribution to the Hubbard Brook Ecosystem Study. The authors thank
three anonymous reviewers for helpful comments.
NR 67
TC 42
Z9 42
U1 20
U2 175
PU AMER INST BIOLOGICAL SCI
PI WASHINGTON
PA 1444 EYE ST, NW, STE 200, WASHINGTON, DC 20005 USA
SN 0006-3568
J9 BIOSCIENCE
JI Bioscience
PD DEC
PY 2012
VL 62
IS 12
BP 1056
EP 1066
DI 10.1525/bio.2012.62.12.7
PG 11
WC Biology
SC Life Sciences & Biomedicine - Other Topics
GA 062JL
UT WOS:000312916000009
ER
PT J
AU Krugner, R
Hagler, JR
Groves, RL
Sisterson, MS
Morse, JG
Johnson, MW
AF Krugner, Rodrigo
Hagler, James R.
Groves, Russell L.
Sisterson, Mark S.
Morse, Joseph G.
Johnson, Marshall W.
TI Plant Water Stress Effects on the Net Dispersal Rate of the Insect
Vector Homalodisca vitripennis (Hemiptera: Cicadellidae) and Movement of
Its Egg Parasitoid, Gonatocerus ashmeadi (Hymenoptera: Mymaridae)
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE Xylella fastidiosa; Pierce's disease; glassy-winged sharpshooter; insect
dispersal; mark-capture
ID GLASSY-WINGED SHARPSHOOTER; XYLELLA-FASTIDIOSA; COAGULATA HEMIPTERA;
ORANGE TREES; TRANSMISSION; HOST; GRAPEVINES; LEAFHOPPER; MODEL;
MANAGEMENT
AB Homalodisca vitripennis (Germar), a vector of Xylella fastidiosa, is associated with citrus plantings in California. Infested citrus orchards act as a source of vectors to adjacent vineyards where X. fastidiosa causes Pierce's disease. An analysis of the pattern and rate of movement of H. vitripennis and its egg parasitoid, Gonatocerus ashmeadi Girault, was conducted in a citrus orchard by using a protein mark capture technique to quantify movement and net dispersal rates in the experimental areas. Treatments included irrigation at 100% of the crop evapotranspiration rate (ETc), 80, and 60% ETc. Sex-specific net dispersal rates showed that H. vitripennis males and females moved consistently and contributed equally to the level of population change within treated areas. Trees irrigated at 60% ETc were the least preferred by H. vitripennis. Among all protein-marked individuals captured in the 60% ETc treatment, approximate to 75 and 88% in 2005 and 2006, respectively, were inflow individuals. Movement toward less preferable plants indicates that in agricultural landscapes dominated by perennial monocultures, there is a random component to H. vitripennis movement, which may result from the inability of H. vitripennis to use plant visual cues, olfactory cues, or both to make well-informed long-range decisions. The 80% ETc areas were a significant source of adult H. vitripennis and G. ashmeadi compared with the other treatments. Colonization rates by parasitoids were synchronized with the spatiotemporal distribution of H. vitripennis eggs. Results suggest that H. vitripennis movement from citrus into adjacent vineyards could be a result of random dispersal rather than oriented movement in response to host-plant characteristics.
C1 [Krugner, Rodrigo; Sisterson, Mark S.] USDA ARS, San Joaquin Valley Agr Sci Ctr, Parlier, CA 93648 USA.
[Hagler, James R.] USDA ARS, Arid Land Agr Res Ctr, Maricopa, AZ USA.
[Groves, Russell L.] Univ Wisconsin, Dept Entomol, Madison, WI 53706 USA.
[Morse, Joseph G.; Johnson, Marshall W.] Univ Calif Riverside, Dept Entomol, Riverside, CA 92521 USA.
RP Krugner, R (reprint author), USDA ARS, San Joaquin Valley Agr Sci Ctr, Parlier, CA 93648 USA.
EM rodrigo.krugner@ars.usda.gov
FU UC Division of Agriculture and Natural Resources; Pierce's Disease and
Glassy-winged Sharpshooter Research Grants Program; United States
Department of Agriculture-Agricultural Research Service (USDA-ARS);
USDA-ARS; UC-Riverside
FX We thank Scott Machtley, Erik Stone, Dan Langhorst, Chrissie Pflipssen,
Heather Terry, Theresa de la Torre, and Arnel P. Flores for technical
assistance and Lynn Morrison and Tom Ortega for the installation and
maintenance of the irrigation system. Appreciation is extended to Kris
Lynn-Patterson and Robert Johnson, University of California (UC) Kearney
Agricultural Research and Extension Center, Parlier, CA, for GIS
assistance. Funding for this project was provided in part by the UC
Division of Agriculture and Natural Resources, Pierce's Disease and
Glassy-winged Sharpshooter Research Grants Program, the United States
Department of Agriculture-Agricultural Research Service (USDA-ARS), and
through a Specific Cooperative Agreement between the USDA-ARS and
UC-Riverside.
NR 39
TC 9
Z9 9
U1 2
U2 22
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0046-225X
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD DEC
PY 2012
VL 41
IS 6
BP 1279
EP 1289
DI 10.1603/EN12133
PG 11
WC Entomology
SC Entomology
GA 058YC
UT WOS:000312670000001
PM 23321075
ER
PT J
AU Snodgrass, GL
Jackson, RE
Perera, OP
Allen, KC
Luttrell, RG
AF Snodgrass, G. L.
Jackson, R. E.
Perera, O. P.
Allen, K. C.
Luttrell, R. G.
TI Effect of Food and Temperature on Emergence from Diapause in the
Tarnished Plant Bug (Hemiptera: Miridae)
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE tarnished plant bug; Lygus lineolaris; diapause; winter host plants;
plant debris
ID MISSISSIPPI RIVER DELTA; LYGUS-HESPERUS KNIGHT; INSECTICIDE RESISTANCE;
HETEROPTERA MIRIDAE; POPULATIONS; LINEOLARIS; ARKANSAS; COTTON
AB Tarnished plant bugs, Lygus lineolaris (Palisot de Beauvois), overwinter as diapausing adults in North America. Overwintering adults were collected near Stoneville, MS from blooming henbit, Lamium amplexicaule L., and from plant debris during December and January and dissected to determine their reproductive status. Averaged over four winters, male and female tarnished plant bugs collected from henbit terminated diapause at a significantly higher rate than males and females from plant debris during each week of December and the first week of January. Both sexes in each habitat were nearly all reproductive by the end of January. Adults overwintering in plant debris terminated diapause during January in the absence of a food stimulus in all 5 yr studied. This emergence was thought to be controlled by an internal clock. Laboratory and field studies showed that emergence from diapause could be influenced by food, sex, and temperature. Adults overwintering on a suitable food source, blooming henbit, terminated diapause during December in the 4 yr studied, and males terminated diapause more rapidly than females. Food quality was important in emergence from diapause, and females on blooming henbit terminated diapause at a significantly higher rate than females on nonblooming mustard, Brassica juncea (L.) Cosson. Laboratory tests showed that diapausing adults reared in the laboratory and held at a diapause-maintaining photoperiod of 10:14 (L:D) h could be terminated from diapause by using food and temperature stimuli. The lower thermal threshold for development to reproductive adults was found to be near 10 degrees C. The ability of diapausing adults to respond to food and temperature stimuli in December can enable tarnished plant bugs to take advantage of warm winters and winter hosts to produce a new generation earlier.
C1 [Snodgrass, G. L.; Jackson, R. E.; Perera, O. P.; Allen, K. C.; Luttrell, R. G.] USDA ARS, So Insect Management Res Unit, Stoneville, MS 38776 USA.
RP Snodgrass, GL (reprint author), USDA ARS, So Insect Management Res Unit, Stoneville, MS 38776 USA.
EM gordon.snodgrass@ars.usda.gov
NR 18
TC 3
Z9 3
U1 4
U2 24
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0046-225X
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD DEC
PY 2012
VL 41
IS 6
BP 1302
EP 1310
DI 10.1603/EN11332
PG 9
WC Entomology
SC Entomology
GA 058YC
UT WOS:000312670000003
PM 23321077
ER
PT J
AU Dodds, KJ
Zylstra, KE
Dubois, GD
Hoebeke, ER
AF Dodds, Kevin J.
Zylstra, Kelley E.
Dubois, Garret D.
Hoebeke, E. Richard
TI Arboreal Insects Associated With Herbicide-Stressed Pinus resinosa and
Pinus sylvestris Used as Sirex noctilio Trap Trees in New York
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE saproxylic; Cerambycidae; Scolytinae; host finding; Ips
ID NORTHEASTERN UNITED-STATES; BARK BEETLES COLEOPTERA;
HYMENOPTERA-SIRICIDAE; NORTH-AMERICA; CERAMBYCIDAE COLEOPTERA;
ATTRACTANT KAIROMONES; AMBROSIA BEETLES; HOST-SELECTION; SCOLYTIDAE;
ETHANOL
AB In September of 2004, Sirex noctilio F. (Hymenoptera: Siricidae) was detected in New York State and later found to be established over a larger area, including parts of southeastern Canada and the northeastern United States. A key component of S. noctilio detection and management plans in other parts of the world where S. noctilio has become established are chemically girdled trap trees. Trap tree usage in North America is confounded by the presence of diverse communities of organisms that inhabit dead and dying trees. We trapped a portion of the arboreal insect community arriving at Pinus resinosa Ait. and Pinus sylvestris L., trap trees girdled 3 mo before (April), one month before (June), and at S. noctilio flight (July) in central New York. Multiple-funnel traps attached to trap trees captured 30,031 individuals from 109 species of Scolytinae, Cerambycidae, and Siricidae. Ips pini (Say) and Ips grandicollis (Eichhoff) accounted for almost 50% of the scolytines captured at trap trees and were present on all girdling dates. Significantly more scolytines and cerambycids were captured on P. sylvestris compared with P. resinosa, but species richness of captured insects did not differ between the two trees. More total and conifer-inhabiting scolytines and cerambycids were captured in traps on trees girdled in April and June and higher observed species richness was found on trees girdled in April and controls. Results from this study suggest a large community of arboreal insects and associated organisms are attracted to chemically girdled trap trees and likely interact with S. noctilio.
C1 [Dodds, Kevin J.; Dubois, Garret D.] USDA Forest Serv, Durham, NH 03824 USA.
[Zylstra, Kelley E.] USDA APHIS PPQ, N Syracuse, NY 13212 USA.
[Hoebeke, E. Richard] Cornell Univ, Dept Entomol, Ithaca, NY 14853 USA.
RP Dodds, KJ (reprint author), USDA Forest Serv, 271 Mast Rd, Durham, NH 03824 USA.
EM kdodds@fs.fed.us
FU U.S. Forest Service Northeastern Area State and Private Forestry grant
[07-DG-11420004-193]
FX A large number of individuals provided assistance during this study.
Durham Field Office staff, including Rachel Johnson, Angie
Maddux-Hammond, and Molly Heuss provided assistance sorting and
identifying some insects. John Stanovick (USFS Northern Research
Station) provided suggestions for statistical analyses. USDA-APHIS
staff, including Mike Crawford, Robin Tait, Rachel Skvarch, Samule
Urffer, Susan Carlton, and Joe Francese assisted with study set-up and
insect collections. Jared Spokowsky, NY Department of Agriculture &
Markets, assisted with location of study sites. Part of this project was
funded by a U.S. Forest Service Northeastern Area State and Private
Forestry grant to Cornell University (cooperative agreement
07-DG-11420004-193).
NR 59
TC 11
Z9 11
U1 0
U2 17
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0046-225X
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD DEC
PY 2012
VL 41
IS 6
BP 1350
EP 1363
DI 10.1603/EN12180
PG 14
WC Entomology
SC Entomology
GA 058YC
UT WOS:000312670000007
PM 23321081
ER
PT J
AU Hough-Goldstein, JA
Lake, E
D'Amico, V
Berg, SH
AF Hough-Goldstein, J. A.
Lake, E.
D'Amico, V.
Berg, S. H.
TI Preferential Edge Habitat Colonization by a Specialist Weevil,
Rhinoncomimus latipes (Coleoptera: Curculionidae)
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE dispersal; orientation; biocontrol; Rhinoncomimus latipes; Persicaria
perfoliata
ID A-MINUTE WEED; POLYGONUM-PERFOLIATUM L.; CABBAGE SEEDPOD WEEVIL;
BIOLOGICAL-CONTROL; KOROTYAEV COLEOPTERA; HOST-SPECIFICITY; FLIGHT
BEHAVIOR; MATRIX HABITAT; DISPERSAL; BEETLE
AB Understanding the behavioral basis of dispersal and colonization is critical in biological control systems, where success of a natural enemy depends in part on its ability to find and move to new host patches. We studied behavior of the specialist weevil Rhinoncomimus latipes Korotyaev, a biological control agent of mile-a-minute weed, Persicaria perfoliata (L.) H. Gross, by releasing weevils at the forest edge and monitoring their colonization of potted host plants arrayed along the edge, out into the open field, and into the forest. Both distance from the release cage and habitat where plants were located affected colonization, with more than twice as many weevils found on plants at 2 m than at 6 or 14 m; at 14 m, 6-8 times as many weevils colonized plants along the forest edge compared with plants in the open field or within the forest. In a second experiment, weevils that were released in an open field 12 m from the forest edge initially flew in all directions, but again ultimately colonized more plants at the edge than out in the open field. This species may be adapted to seek host plants at the forest edge, because P. perfoliata generally is found in riparian corridors in its native range and along forest edges in North America. Results suggest that R. latipes will move successfully to new P. perfoliata patches along wooded edges, but may not readily locate isolated patches in the open or those embedded in forests.
C1 [Hough-Goldstein, J. A.; Berg, S. H.] Univ Delaware, Dept Entomol & Wildlife Ecol, Newark, DE 19716 USA.
[Lake, E.] USDA ARS, Invas Plant Res Lab, Ft Lauderdale, FL 33314 USA.
[D'Amico, V.] US Forest Serv, No Res Stn, Dept Entomol & Wildlife Ecol, Newark, DE 19716 USA.
RP Hough-Goldstein, JA (reprint author), Univ Delaware, Dept Entomol & Wildlife Ecol, 531 S Coll Ave, Newark, DE 19716 USA.
EM jhough@udel.edu
FU USDA Forest Service
FX We thank Kiri Cutting, Kaitlin Handley, Jeffrey Smith, Jacob Shaner, and
Amanda Stout for technical assistance, and John Pesek for statistical
advice. We also thank personnel at the Phillip Alampi Beneficial Insect
Laboratory, NJ Department of Agriculture, for supplying weevils, and the
USDA Forest Service for funding the mile-a-minute biological control
project.
NR 33
TC 0
Z9 0
U1 2
U2 15
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0046-225X
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD DEC
PY 2012
VL 41
IS 6
BP 1466
EP 1473
DI 10.1603/EN12090
PG 8
WC Entomology
SC Entomology
GA 058YC
UT WOS:000312670000020
PM 23321094
ER
PT J
AU Flinn, PW
Campbell, JF
AF Flinn, Paul W.
Campbell, James F.
TI Effects of Flour Conditioning on Cannibalism of T. castaneum Eggs and
Pupae
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE cannibalism; flour conditioning; Tribolium castaneum; population
dynamics
ID TRIBOLIUM-CASTANEUM; BEETLE
AB Cannibalism is a very important factor regulating population dynamics of the red flour beetle. After several days of feeding, the flour becomes conditioned by the beetles, which can affect rates of cannibalism. Flour conditioning is caused by an accumulation of feces, pheromones, and ethylquinone, which is a repellent produced by the beetles. We determined the effect of five different levels of flour conditioning on cannibalism of red flour beetle eggs and pupae by adult and larval stages. Larvae had the highest rates of egg cannibalism (12 eggs eaten over the 4-d period) followed by female adults (seven eggs consumed). Adult males had the lowest rates of cannibalism with only two eggs consumed. Cannibalism of eggs by females was correlated negatively with the level of flour conditioning. There was no effect of flour conditioning on egg or pupal cannibalism by larvae or adult males. Cannibalism by adult females may decrease as the level of flour conditioning increases because females may spend less time tunneling in highly conditioned flour and more time trying to disperse to other areas that are better for oviposition.
C1 [Flinn, Paul W.; Campbell, James F.] USDA, ARS, Ctr Grain & Anim Hlth Res, Manhattan, KS 66502 USA.
RP Flinn, PW (reprint author), USDA, ARS, Ctr Grain & Anim Hlth Res, 1515 Coll Ave, Manhattan, KS 66502 USA.
EM paul.flinn@ars.usda.gov
RI Flinn, Paul/B-9104-2013; Campbell, James/J-9901-2012
NR 10
TC 0
Z9 0
U1 0
U2 26
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0046-225X
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD DEC
PY 2012
VL 41
IS 6
BP 1501
EP 1504
DI 10.1603/EN12222
PG 4
WC Entomology
SC Entomology
GA 058YC
UT WOS:000312670000024
PM 23321098
ER
PT J
AU Kelly, JL
Hagler, JR
Kaplan, I
AF Kelly, Jessica L.
Hagler, James R.
Kaplan, Ian
TI Employing Immunomarkers to Track Dispersal and Trophic Relationships of
a Piercing-Sucking Predator, Podisus maculiventris (Hemiptera:
Pentatomidae)
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE biological control; protein marking; ELISA; augmentation; predation
monitoring
ID PREY; EFFICACY; ASSAY; PCR
AB Immunoproteins are markers that are useful for monitoring dispersal and/or pest consumption, but current application techniques are less effective for the large guild of piercing-sucking predators important in biocontrol. We quantified the use of protein immunomarks in tracking emigration of spined soldier bug, Podisus maculiventris Say (Hemiptera: Pentatomidae) and predation on the hornworm caterpillar, Manduca sexta L. (Lepidoptera: Sphingidae). An external protein mark was topically applied to adult P. maculiventris to assess persistence under field conditions for > 2 wk. Internal marks were incorporated into the artificial diet of M. sexta to test retention of the internal mark in the prey and uptake of the mark by predators. External marks remained detectable in 100% of individuals after 3 d and > 50% still tested positive at 12 d after application in the field. Internal diet-based marking was also effective in tracking feeding by P. maculiventris on M. sexta, especially using rabbit IgG that was far more persistent than chicken IgY. Nearly 90% of stink bugs fed caterpillars previously reared on protein-enriched diet retained their mark for 24 h. Surprisingly, diet concentration and time reared on diet had comparatively little impact on mark retention. Development on unmarked tomato leaves clearly diluted the initial diet mark, but plant-reared individuals that were marked were still successfully detected in 35 and 20% of the predators.
C1 [Kelly, Jessica L.; Kaplan, Ian] Purdue Univ, Dept Entomol, W Lafayette, IN 47907 USA.
[Hagler, James R.] USDA ARS, US Arid Land Agr Res Ctr, Maricopa, AZ 85138 USA.
RP Kelly, JL (reprint author), Purdue Univ, Dept Entomol, 901 W State St, W Lafayette, IN 47907 USA.
EM kelly74@purdue.edu
FU U.S. Department of Agriculture-National Institute of Food and
Agriculture [2011-67013-30126]
FX We thank U.S. Department of Agriculture-National Institute of Food and
Agriculture, Grant 2011-67013-30126 for funding this work. In addition,
we thank Felisa Blackmer, Scott Machtley, Juan Sandoval, and Gabe Zilnik
for technical support. Finally, we thank Douglas Richmond, Gina
Angelella, Carmen Blubaugh, Joseph Braasch, and Ulianova Vidal Gomez for
reviewing the experimental design and manuscript.
NR 18
TC 7
Z9 7
U1 1
U2 33
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0046-225X
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD DEC
PY 2012
VL 41
IS 6
BP 1527
EP 1533
DI 10.1603/EN12175
PG 7
WC Entomology
SC Entomology
GA 058YC
UT WOS:000312670000027
PM 23321101
ER
PT J
AU Gillette, NE
Mehmel, CJ
Mori, SR
Webster, JN
Wood, DL
Erbilgin, N
Owen, DR
AF Gillette, Nancy E.
Mehmel, Constance J.
Mori, Sylvia R.
Webster, Jeffrey N.
Wood, David L.
Erbilgin, Nadir
Owen, Donald R.
TI The Push-Pull Tactic for Mitigation of Mountain Pine Beetle (Coleoptera:
Curculionidae) Damage in Lodgepole and Whitebark Pines
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE Pinus albicaulis; Pinus contorta; semiochemicals; verbenone; green leaf
volatiles
ID DENDROCTONUS-PONDEROSAE COLEOPTERA; UNITED-STATES; BARK BEETLES;
VERBENONE; SCOLYTIDAE; ATTACK; INFESTATIONS; PROTECTION; PHEROMONE;
WESTERN
AB In an attempt to improve semiochemical-based treatments for protecting forest stands from bark beetle attack, we compared push-pull versus push-only tactics for protecting lodgepole pine (Pinus contorta Douglas ex Loudon) and whitebark pine (Pinus albicaulis Engelm.) stands from attack by mountain pine beetle (Dendroctonus ponderosae Hopkins) in two studies. The first was conducted on replicated 4.04-ha plots in lodgepole pine stands (California, 2008) and the second on 0.81-ha plots in whitebark pine stands (Washington, 2010). In both studies, D. ponderosae population levels were moderate to severe. The treatments were 1) push-only (D. ponderosae antiaggregant semiochemicals alone); 2) push-pull (D. ponderosae antiaggregants plus perimeter traps placed at regular intervals, baited with four-component D. ponderosae aggregation pheromone); and 3) untreated controls. We installed monitoring traps baited with two-component D. ponderosae lures inside each plot to assess effect of treatments on beetle flight. In California, fewer beetles were collected in push-pull treated plots than in control plots, but push-only did not have a significant effect on trap catch. Both treatments significantly reduced the rate of mass and strip attacks by D. ponderosae, but the difference in attack rates between push-pull and push-only was not significant. In Washington, both push-pull and push-only treatments significantly reduced numbers of beetles caught in traps. Differences between attack rates in treated and control plots in Washington were not significant, but the push-only treatment reduced attack rates by 30% compared with both the control and push-pull treatment. We conclude that, at these spatial scales and beetle densities, push-only may be preferable for mitigating D. ponderosae attack because it is much less expensive, simpler, and adding trap-out does not appear to improve efficacy.
C1 [Gillette, Nancy E.; Mori, Sylvia R.] USDA Forest Serv, Pacific SW Res Stn, Albany, CA 94710 USA.
[Mehmel, Constance J.] USDA Forest Serv, Forest Insect & Dis Ctr, Wenatchee, WA 98801 USA.
[Webster, Jeffrey N.] Webster Forestry Consulting, Redding, CA 96002 USA.
[Wood, David L.] Univ Calif Berkeley, Dept Environm Sci Policy & Management, Berkeley, CA 94720 USA.
[Erbilgin, Nadir] Univ Alberta, Fac Life Agr & Environm Sci, Dept Renewable Resources, Edmonton, AB T6G 2E3, Canada.
[Owen, Donald R.] Calif Dept Forestry & Fire Protect, Redding, CA 96002 USA.
RP Gillette, NE (reprint author), USDA Forest Serv, Pacific SW Res Stn, 800 Buchanan St, Albany, CA 94710 USA.
EM ngillette2@fs.fed
RI Erbilgin, Nadir/F-3675-2014
OI Erbilgin, Nadir/0000-0001-9912-8095
FU USDA Forest Service Pesticide Impact Assessment Program
FX This study was funded by two grants from the USDA Forest Service
Pesticide Impact Assessment Program to NEG and CJM. We thank: Roger
Siemers (USDA FS, Klamath National Forest) and Mallory Lenz and Randy
Niman (USDA FS, Okanogan-Wenatchee National Forest) for assistance with
plot location; Elizabeth Gonzales and Joyce Wong (University of
California, Berkeley) for identifying and counting beetles; Roy
Magelssen and Darci Carlson (USDA Forest Service, Forest Health
Protection, Wenatchee, WA) for assistance with field work; and Gaylord
Briggs and Eric Webster (Webster Forestry Consulting, Redding, CA) for
assistance with field work and data entry. Christopher Fettig (USDA FS,
Pacific Southwest Research Station, Albany, CA), Dan Miller (USDA FS,
Southern Research Station, Athens, GA) and Brice McPherson (University
of California, Berkeley, CA) provided very helpful reviews. We thank
Hank Appleton, USDA FS Forest Health Protection, Washington, DC, for
sustained support of bark beetle semiochemical research.
NR 47
TC 11
Z9 11
U1 1
U2 44
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0046-225X
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD DEC
PY 2012
VL 41
IS 6
BP 1575
EP 1586
DI 10.1603/EN11315
PG 12
WC Entomology
SC Entomology
GA 058YC
UT WOS:000312670000032
PM 23321106
ER
PT J
AU Kendra, PE
Montgomery, WS
Niogret, J
Deyrup, MA
Guillen, L
Epsky, ND
AF Kendra, Paul E.
Montgomery, Wayne S.
Niogret, Jerome
Deyrup, Mark A.
Guillen, Larissa
Epsky, Nancy D.
TI Xyleborus glabratus, X. affinis, and X. ferrugineus (Coleoptera:
Curculionidae: Scolytinae): Electroantennogram Responses to Host-Based
Attractants and Temporal Patterns in Host-Seeking Flight
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE redbay ambrosia beetle; electroantennography; silkbay; phoebe oil;
manuka oil
ID REDBAY AMBROSIA BEETLE; ANASTREPHA-SUSPENSA DIPTERA; SOUTHEASTERN
UNITED-STATES; ESSENTIAL OIL LURES; LAUREL WILT; AMMONIUM BICARBONATE;
BEHAVIORAL-RESPONSES; PHOEBE OIL; TEPHRITIDAE; RAFFAELEA
AB The redbay ambrosia beetle, Xyleborus glabratus Eichhoff, is an exotic wood-boring insect that vectors the mycopathogen responsible for laurel wilt, a lethal vascular disease of trees in the Lauraceae, including avocado (Persea americana Mill.). Effective semiochemical-based detection and control programs for X. glabratus will require an understanding of the chemical ecology and host-seeking behaviors of this new invasive pest. This study 1) presents an electroantennography (EAG) method developed for assessment of olfactory responses in ambrosia beetles; 2) uses that new method to quantify EAG responses of X. glabratus, X. affinis, and X. ferrugineus to volatiles from three host-based attractants: manuka oil (essential oil extract from Leptospermum scoparium Forst. & Forst.), phoebe oil (extract from Phoebe porosa Mex.), and wood from silkbay (Persea humilis Nash); and 3) documents temporal differences in host-seeking flight of the sympatric Xyleborus species. Field observations revealed that X. glabratus engages in flight several hours earlier than X. affinis and X. ferrugineus, providing a window for selective capture of the target pest species. In EAG analyses with X. glabratus, antennal response to phoebe oil was equivalent to response to host Persea wood, but EAG response elicited with manuka oil was significantly less. In comparative studies, EAG response of X. glabratus was significantly higher than response of either X. affinis or X. ferrugineus to all three host-based substrates. Future research will use this EAG method to measure olfactory responses to synthetic terpenoids, facilitating identification of the specific kairomones used by X. glabratus for host location.
C1 [Kendra, Paul E.; Montgomery, Wayne S.; Niogret, Jerome; Epsky, Nancy D.] USDA ARS, Subtrop Hort Res Stn, Miami, FL 33158 USA.
[Deyrup, Mark A.] Archbold Biol Stn, Lake Placid, FL 33862 USA.
[Guillen, Larissa] Inst Ecol, Xalapa 91070, Veracruz, Mexico.
RP Kendra, PE (reprint author), USDA ARS, Subtrop Hort Res Stn, 13601 Old Cutler Rd, Miami, FL 33158 USA.
EM paul.kendra@ars.usda.gov
FU USDA-ARS National Plant Disease Recovery System; National Institute of
Food and Agriculture Critical Issues Grant; Florida Avocado
Administrative Committee
FX We gratefully acknowledge Jorge Sanchez (USDA-ARS; Miami, FL) for
technical assistance; Gary Bauchan (USDA-ARS; Beltsville, MD) for SEM;
David Jenkins (USDA-ARS; Mayaguez, PR); David Kuhn (USDA-ARS; Miami,
FL); and two journal referees for manuscript reviews; Hilary Swain for
providing laboratory space at Archbold Biological Station (Lake Placid,
FL); and Shane Belson (Florida Fish and Wildlife Conservation
Commission; St. Cloud, FL) for assistance in obtaining a special use
permit for the Lake Wales Ridge Wildlife Management Area (Highlands
County, FL). This work was supported in part by the USDA-ARS National
Plant Disease Recovery System, a National Institute of Food and
Agriculture Critical Issues Grant, and the Florida Avocado
Administrative Committee.
NR 39
TC 13
Z9 14
U1 2
U2 48
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0046-225X
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD DEC
PY 2012
VL 41
IS 6
BP 1597
EP 1605
DI 10.1603/EN12164
PG 9
WC Entomology
SC Entomology
GA 058YC
UT WOS:000312670000034
PM 23321108
ER
PT J
AU Keena, MA
Trotter, RT
Cheah, C
Montgomery, ME
AF Keena, Melody A.
Trotter, R. Talbot, III
Cheah, Carole
Montgomery, Michael E.
TI Effects of Temperature and Photoperiod on the Aestivo-Hibernal Egg
Diapause of Scymnus camptodromus (Coleoptera: Coccinellidae)
SO ENVIRONMENTAL ENTOMOLOGY
LA English
DT Article
DE Scymnus camptodromus; egg diapause; temperature; hatch
ID WOOLLY ADELGID HEMIPTERA; SOUTHERN NEW-ENGLAND; TSUGAE HEMIPTERA;
HEMLOCK; HOMOPTERA; RESISTANCE; PREDATORS; EVOLUTION; FORESTS
AB Three sequential studies were conducted on the interacting effects of exposure to low (5 degrees C) temperature for 0, 7, 28, 56, or 84 d followed by incubation at 10, 15, or 20 degrees C on the egg diapause of Scymnus (Neopullus) camptodromus Yu and Liu (Coleoptera: Coccinellidae). This beetle was imported from China as a potential biological control agent for hemlock woolly adelgid, Adelges tsugae (Annand) (Hemiptera: Adelgidae). Very few eggs laid and held at a constant 15 or 20 degrees C showed any indication of development. Only eggs exposed to temperature combinations of 5 and 10 degrees C had >50% hatch. Highest percent hatch and fastest development occurred when eggs were held at 5 degrees C for 56 or 84 d followed by holding at 10 degrees C. A model estimated the lower threshold for postdiapause development to be 2 degrees C. The effect of temperature on egg hatch was similar at photoperiods of 12: 12 and 16: 8 (L:D) h, suggesting egg development is not governed by photoperiod or light exposure. Collectively these data indicate that S. camptodromus eggs laid in the spring and summer go through an aestivo-hibernal diapause that is maintained by warm temperatures and that development resumes when temperatures drop, in parallel with the development of hemlock woolly adelgid. This concurrent development allows S. camptodromus eggs to hatch while hemlock woolly adelgid is laying eggs. This synchrony between the development of S. camptodromus eggs and the overwintering adelgid suggest this beetle may be a good candidate for the biological control of the hemlock woolly adelgid.
C1 [Keena, Melody A.; Trotter, R. Talbot, III; Montgomery, Michael E.] US Forest Serv, No Res Stn, NE Ctr Forest Hlth Res, Hamden, CT 06514 USA.
[Cheah, Carole] Connecticut Agr Expt Stn, Windsor, CT 06095 USA.
RP Keena, MA (reprint author), US Forest Serv, No Res Stn, NE Ctr Forest Hlth Res, 51 Mill Pond Rd, Hamden, CT 06514 USA.
EM mkeena@fs.fed.us
NR 32
TC 2
Z9 4
U1 4
U2 21
PU ENTOMOLOGICAL SOC AMER
PI LANHAM
PA 10001 DEREKWOOD LANE, STE 100, LANHAM, MD 20706-4876 USA
SN 0046-225X
J9 ENVIRON ENTOMOL
JI Environ. Entomol.
PD DEC
PY 2012
VL 41
IS 6
BP 1662
EP 1671
DI 10.1603/EN12217
PG 10
WC Entomology
SC Entomology
GA 058YC
UT WOS:000312670000042
PM 23321116
ER
PT J
AU Roesch, FA
Coulston, JW
Hill, AD
AF Roesch, Francis A.
Coulston, John W.
Hill, Andrew D.
TI Statistical Properties of Alternative National Forest Inventory Area
Estimators
SO FOREST SCIENCE
LA English
DT Article
DE nonresponse; Polya posterior
AB The statistical properties of potential estimators of forest area for the USDA Forest Service's Forest Inventory and Analysis (FIA) program are presented and discussed. The current FIA area estimator is compared and contrasted with a weighted mean estimator and an estimator based on the Polya posterior, in the presence of nonresponse. Estimator optimality is evaluated both theoretically and via simulation under bias and mean squared error criteria. The results indicate that, under realistic conditions, the current FIA area estimator can sometimes result in substantial bias and have a higher mean squared error than both of the alternative estimators. This finding is of special interest because the same factor that contributes to this increased bias and variance applies to all area-based FIA estimates. The weighted mean and Polya posterior estimators gave similar results for estimating the total area of a domain. It is concluded that the main advantage of the latter approach is that many other statistics are obtainable because the entire population distribution is estimated from the same sampling effort. The cost of this advantage for the Polya posterior approach is that a single result requires many more computer operations, a cost that has become virtually ignorable over the past decade. FOR. SCI. 58(6): 559-566.
C1 [Roesch, Francis A.] US Forest Serv, USDA, So Res Stn, Asheville, NC 28804 USA.
RP Roesch, FA (reprint author), US Forest Serv, USDA, So Res Stn, 200 WT Weaver Blvd, Asheville, NC 28804 USA.
EM froesch@fs.fed.us; jcoulston@fs.fed.us; adhill@fs.fed.us
FU USDA Forest Service Forest Inventory and Analysis Program
FX This work was funded by the USDA Forest Service Forest Inventory and
Analysis Program. The authors thank the Associate Editor and two
anonymous reviewers for their helpful comments.
NR 22
TC 0
Z9 0
U1 0
U2 3
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
J9 FOREST SCI
JI For. Sci.
PD DEC
PY 2012
VL 58
IS 6
BP 559
EP 566
DI 10.5849/forsci.11-008
PG 8
WC Forestry
SC Forestry
GA 062MY
UT WOS:000312925100002
ER
PT J
AU Wiemann, MC
Williamson, GB
AF Wiemann, Michael C.
Williamson, G. Bruce
TI Testing a Novel Method to Approximate Wood Specific Gravity of Trees
SO FOREST SCIENCE
LA English
DT Article
DE increment borers; tree cores; Wiemann approximation; wood specific
gravity
ID RADIAL VARIATION; NEOTROPICAL FORESTS; TROPICAL PIONEERS; FUNCTIONAL
TRAITS; AMAZONIAN FORESTS; BRAZILIAN AMAZON; DENSITY; BIOMASS;
GRADIENTS; AREA
AB Wood specific gravity (SG) has long been used by foresters as an index for wood properties. More recently, SG has been widely used by ecologists as a plant functional trait and as a key variable in estimates of biomass. However, sampling wood to determine SG can be problematic; at present, the most common method is sampling with an increment borer to extract a bark-to-pith core-a difficult task requiring considerable physical effort and sometimes repeated borings to hit the pith, with potential to damage the trunk of small trees. Here, we test a novel sampling method that reduces the effort to obtain an adequate increment core and results in less wood extracted from the tree. The Wiemann approximation predicts the point along a radius at which the wood SG equals the disk cross-sectional SG. When SG changes linearly across the radius, the point of approximation is at two-thirds of the radial distance. As a test, we compare SG at various points along the radius with the true SG of the disk. At all points except the point of approximation (i.e., at two-thirds of the radial distance), wood SG differed significantly from the true cross-sectional mean SG, whereas at two-thirds of the radial distance, the wood SG did not differ significantly from the tree mean SG for a group of 128 tropical trees and 25 temperate trees that had been sampled bark to pith. Overall, the method shows promise in that wood SG of a tree may be estimated accurately and without bias by boring the tree only to the point of approximation, that is, one-sixth of the trunk diameter. However, boring to one-sixth of the diameter provides an unbiased estimate of SG only if radial variation in SG is a linear function of radial distance. A limitation of the method is that an initial subsample of trees must be bored to determine the pattern of radial variation in a species before the approximation can be applied to other individuals. FOR. SCI. 58(6):577-591.
C1 [Wiemann, Michael C.] US Forest Serv, USDA, Ctr Wood Anat Res, Madison, WI 53726 USA.
[Williamson, G. Bruce] Louisiana State Univ, Baton Rouge, LA 70803 USA.
RP Wiemann, MC (reprint author), US Forest Serv, USDA, Ctr Wood Anat Res, 1 Gifford Pinchot Dr, Madison, WI 53726 USA.
EM mwiemann@fs.fed.us; btwill@lsu.edu
FU Organization for Tropical Studies; Michaux Fund of the American
Philosophical Society; US National Science Foundation [DEB-0639114]
FX Sayra Navas, Toni Soto, and Jacqueline Henrot helped in extracting and
measuring the cores. Luis Poveda and Nelson Zamora identified the
tropical species. Vanessa Boukili, Jessica Deichmann, and Lindsay
Wieland gave critical reviews that improved the manuscript. Financial
support was provided by the Organization for Tropical Studies, the
Michaux Fund of the American Philosophical Society, and the US National
Science Foundation (DEB-0639114). This is publication number 578 in the
Technical Series of the Biological Dynamics of Forest Fragments Project
BDFFP-INPA-STRI. We gratefully acknowledge the cooperation of the
Organization for Tropical Studies.
NR 37
TC 3
Z9 3
U1 1
U2 20
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
J9 FOREST SCI
JI For. Sci.
PD DEC
PY 2012
VL 58
IS 6
BP 577
EP 591
DI 10.5849/forsci.10-049
PG 15
WC Forestry
SC Forestry
GA 062MY
UT WOS:000312925100004
ER
PT J
AU Chung, W
Venn, TJ
Loeffler, D
Jones, G
Han, HS
Calkin, DE
AF Chung, Woodam
Venn, Tyron J.
Loeffler, Dan
Jones, Greg
Han, Han-Sup
Calkin, Dave E.
TI Assessing the Potential for Log Sort Yards to Improve Financial
Viability of Forest Restoration Treatments
SO FOREST SCIENCE
LA English
DT Article
DE log sort yard; financial analysis; forest restoration treatment; spatial
analysis; residual value
ID MONTANA; HAZARD
AB Forest restoration and fuel reduction treatments have been widely applied in the western United States with the purpose of reducing the size and intensity of wildfires. However, the low value of small-diameter trees produced from such treatments has partly constrained the ability to treat all the areas identified as being in need of treatments. The objective of this study was to analyze the potential for log sort yards to increase the residual value of forest restoration treatments relative to a standard sort at landing in Ravalli County, Montana. We simulated log handing and transportation under two log sorting scenarios in Ravalli County: sort at landing resulting in two log products and sort at sort yard resulting in seven potential log products. Costs and value recovery in each scenario were estimated, and the residual values were compared. We found that establishment of a log sort yard in Ravalli County could increase the residual value of forest restoration treatments by 5%. However, the benefit of the sort yard varies substantially by the forest type from which logs are harvested and the available volume of and markets for high value products, such as house logs. FOR. SCI. 58(6):641-651.
C1 [Chung, Woodam] Univ Montana, Dept Forest Management, Coll Forestry & Conservat, Missoula, MT 59812 USA.
[Calkin, Dave E.] US Forest Serv, Rocky Mt Res Stn, USDA, Morgantown, WV USA.
[Han, Han-Sup] Humboldt State Univ, Arcata, CA USA.
RP Chung, W (reprint author), Univ Montana, Dept Forest Management, Coll Forestry & Conservat, Missoula, MT 59812 USA.
EM woodam.chung@umontana.edu; tyron.venn@umontana.edu;
drloeffler@fs.fed.us; jgjones@fs.fed.us; han-sup.han@humboldt.edu;
decalkin@fs.fed.us
RI Calkin, David/F-4727-2014
FU Rocky Mountain Research Station, Forest Service, USDA
FX This research was supported by funds provided by the Rocky Mountain
Research Station, Forest Service, USDA.
NR 29
TC 3
Z9 3
U1 0
U2 7
PU SOC AMER FORESTERS
PI BETHESDA
PA 5400 GROSVENOR LANE, BETHESDA, MD 20814 USA
SN 0015-749X
J9 FOREST SCI
JI For. Sci.
PD DEC
PY 2012
VL 58
IS 6
BP 641
EP 651
DI 10.5849/forsci.10-016
PG 11
WC Forestry
SC Forestry
GA 062MY
UT WOS:000312925100009
ER
PT J
AU Neary, DG
Koestner, KA
Youberg, A
Koestner, PE
AF Neary, Daniel G.
Koestner, Karen A.
Youberg, Ann
Koestner, Peter E.
TI Post-fire rill and gully formation, Schultz Fire 2010, Arizona, USA
SO GEODERMA
LA English
DT Article
DE Wildfire; Soil erosion; Rills; Gullies; Schultz Fire
ID EROSION; SOILS
AB The Schultz Fire burned 6100 ha on the eastern slopes of the San Francisco Peaks in northern Arizona. The fire burned between June 20th and 30th, 2010, across moderate to very steep ponderosa pine and mixed conifer watersheds. About 40% of the fire area was classified as high-severity, mostly on mountain slopes greater than 30% and in places exceeding 100%. The upper slopes rise to over 3300 m and are the source for high energy water, coarse sediments, and woody material. A series of flood events beginning in mid-July 2010 initiated erosion that removed substantial soil from the upper slopes of the watersheds. The second event was characterized by a peak rainfall of 24 mm in 10 min. Substantial amounts of soil were eroded out of a newly developed rill and gully system, removing the A horizon and much of the B horizon. Prior to the fire there were no rills or gullies as the soil was protected by a thick 0 horizon. This protective organic layer burned off during the fire leaving the soil exposed to raindrop impact and erosion. The re was widespread occurrence of high severity fire, with some watersheds classified as 70% high severity wildfire. This left most of the soils with moderate to severe water repellency. The development of an extensive rill and gully network fundamentally changed the hydrologic response of the upper portions of every catchment. The intense, short duration rainfall of the 2010 monsoon interacted with slope, water repellency and extensive areas of bare soil to produce flood flows an order of magnitude in excess of flows produced by similar pre-fire rainfall events. The till networks now cover much of the upper slopes and gullies are beginning to cut to bedrock. Sediment delivery to the channel systems is likely to continue unabated for many years and hydrologic response will continue to be flashy. Published by Elsevier B.V.
C1 [Neary, Daniel G.; Koestner, Karen A.] US Forest Serv, USDA, Rocky Mt Res Stn, Flagstaff, AZ 86001 USA.
[Youberg, Ann] Arizona Geol Survey, Tucson, AZ 85701 USA.
[Koestner, Peter E.] US Forest Serv, USDA, Rocky Mt Res Stn, Phoenix, AZ 85006 USA.
RP Neary, DG (reprint author), US Forest Serv, USDA, Rocky Mt Res Stn, 2500 Pine Knoll Dr, Flagstaff, AZ 86001 USA.
EM dneary@fs.fed.us
NR 16
TC 6
Z9 6
U1 0
U2 19
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0016-7061
J9 GEODERMA
JI Geoderma
PD DEC
PY 2012
VL 191
SI SI
BP 97
EP 104
DI 10.1016/j.geoderma.2012.01.016
PG 8
WC Soil Science
SC Agriculture
GA 054NB
UT WOS:000312349400012
ER
PT J
AU Melton, FS
Johnson, LF
Lund, CP
Pierce, LL
Michaelis, AR
Hiatt, SH
Guzman, A
Adhikari, DD
Purdy, AJ
Rosevelt, C
Votava, P
Trout, TJ
Temesgen, B
Frame, K
Sheffner, EJ
Nemani, RR
AF Melton, Forrest S.
Johnson, Lee F.
Lund, Christopher P.
Pierce, Lars L.
Michaelis, Andrew R.
Hiatt, Samuel H.
Guzman, Alberto
Adhikari, Diganta D.
Purdy, Adam J.
Rosevelt, Carolyn
Votava, Petr
Trout, Thomas J.
Temesgen, Bekele
Frame, Kent
Sheffner, Edwin J.
Nemani, Ramakrishna R.
TI Satellite Irrigation Management Support With the Terrestrial Observation
and Prediction System: A Framework for Integration of Satellite and
Surface Observations to Support Improvements in Agricultural Water
Resource Management
SO IEEE JOURNAL OF SELECTED TOPICS IN APPLIED EARTH OBSERVATIONS AND REMOTE
SENSING
LA English
DT Article
DE Agriculture; irrigation; remote sensing; soil moisture; water resources;
wireless sensor networks; web services
ID REFERENCE EVAPOTRANSPIRATION; CROP-EVAPOTRANSPIRATION; ENERGY-BALANCE;
NORTH-AMERICA; SHADED AREA; MODEL; REFLECTANCE; CALIFORNIA; CANOPY;
COEFFICIENTS
AB In California and other regions vulnerable to water shortages, satellite-derived estimates of key hydrologic fluxes can support agricultural producers and water managers in maximizing the benefits of available water supplies. The Satellite Irrigation Management Support (SIMS) project combines NASA's Terrestrial Observation and Prediction System (TOPS), Landsat and MODIS satellite imagery, and surface sensor networks to map indicators of crop irrigation demand and develop information products to support irrigation management and other water use decisions. TOPS-SIMS provides the computing and data processing systems required to support automated, near real-time integration of observations from satellite and surface sensor networks, and generates data and information in formats that are convenient for agricultural producers, water managers, and other end users. Using the TOPS modeling framework to integrate data from multiple sensor networks in near real-time, SIMS currently maps crop fractional cover, basal crop coefficients, and basal crop evapotranspiration. Map products are generated at 30 m resolution on a daily basis over approximately 4 million ha of California farmland. TOPS-SIMS is a fully operational prototype, and a publicly available beta-version of the web interface is being pilot tested by farmers, irrigation consultants, and water managers in California. Data products are distributed via dynamic web services, which support both visual mapping and time-series queries, to allow users to obtain information on spatial and temporal patterns in crop canopy development and water requirements. TOPS-SIMS is an application framework that demonstrates the value of integrating multi-disciplinary Earth observation systems to provide benefits for water resource management.
C1 [Melton, Forrest S.; Johnson, Lee F.; Lund, Christopher P.; Pierce, Lars L.; Michaelis, Andrew R.; Hiatt, Samuel H.; Guzman, Alberto; Purdy, Adam J.; Rosevelt, Carolyn; Votava, Petr] Calif State Univ, Seaside, CA 93955 USA.
[Melton, Forrest S.; Johnson, Lee F.; Lund, Christopher P.; Michaelis, Andrew R.; Hiatt, Samuel H.; Guzman, Alberto; Votava, Petr; Sheffner, Edwin J.; Nemani, Ramakrishna R.] NASA, Ames Res Ctr, Moffett Field, CA 94035 USA.
[Adhikari, Diganta D.] Calif State Univ Fresno, Ctr Irrigat Technol, Fresno, CA 93740 USA.
[Trout, Thomas J.] USDA ARS, Ft Collins, CO 80526 USA.
[Temesgen, Bekele; Frame, Kent] Calif Dept Water Resources, Sacramento, CA 95814 USA.
RP Melton, FS (reprint author), Calif State Univ, Seaside, CA 93955 USA.
EM forrest.s.melton@nasa.gov; lee.f.johnson@nasa.gov; clund@csumb.edu;
lpierce@csumb.edu; an-drew.r.michaelis@nasa.gov; sam.hiatt@gmail.com;
aguzman@csumb.edu; diganta@csufresno.edu; adamjpurdy@gmail.com;
crosevelt@csumb.edu; petr.votava-1@nasa.gov; thomas.trout@ars.usda.gov;
temesgen@water.ca.gov; kframe@water.ca.gov; edwin.j.sheffner@nasa.gov;
rama.nemani@nasa.gov
OI Trout, Thomas/0000-0003-1896-9170
FU NASA [NNX10AE48A]; University Corp. at Monterey Bay
FX TOPS-SIMS development was funded by the NASA Applied Sciences Program
under Award NNX10AE48A to California State University, Monterey Bay
(CSUMB).; The energy-balance comparison data were generated by SEBAL
North America, Inc., under a sub-contract from the University Corp. at
Monterey Bay. The authors gratefully acknowledge Ian Harlan and Randall
Holloway of CSUMB for assistance with deployment of field
instrumentation, as well as the anonymous reviewers for their comments
and suggestions to improve the manuscript.
NR 51
TC 9
Z9 9
U1 2
U2 32
PU IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC
PI PISCATAWAY
PA 445 HOES LANE, PISCATAWAY, NJ 08855-4141 USA
SN 1939-1404
EI 2151-1535
J9 IEEE J-STARS
JI IEEE J. Sel. Top. Appl. Earth Observ. Remote Sens.
PD DEC
PY 2012
VL 5
IS 6
SI SI
BP 1709
EP 1721
DI 10.1109/JSTARS.2012.2214474
PG 13
WC Engineering, Electrical & Electronic; Geography, Physical; Remote
Sensing; Imaging Science & Photographic Technology
SC Engineering; Physical Geography; Remote Sensing; Imaging Science &
Photographic Technology
GA 063OL
UT WOS:000313009300015
ER
PT J
AU Holland, KH
Lamb, DW
Schepers, JS
AF Holland, Kyle H.
Lamb, David W.
Schepers, James S.
TI Radiometry of Proximal Active Optical Sensors (AOS) for Agricultural
Sensing
SO IEEE JOURNAL OF SELECTED TOPICS IN APPLIED EARTH OBSERVATIONS AND REMOTE
SENSING
LA English
DT Article
DE Agriculture; optics; optoelectronic devices; radiometry; remote sensing
ID VEGETATION INDEXES; PASTURE; REFLECTANCE; CORN
AB Over the last decade, portable, active optical sensors (AOS) have become tools in production agriculture both for mapping crops and soils and also for applying agrochemicals. These sensors are often referred to as "proximal" active optical sensors, in recognition of their deployment at sensor-target distances in the order of meters. Unfortunately most users have little understanding of the underlying physics (optics) or construction of these sensors. This paper sets out to document the fundamental electro-optical principles by which these devices operate and to document the mathematical rules governing the use of data produced by these devices. In particular, emphasis is placed on the inverse-square law of optics and how it affects AOS measurements. The basis for utilizing sensor measurements in more complex mathematical functions is also presented, including manipulation of the individual wavelength response data to derive information regarding the distance variation between the sensor and the target.
C1 [Holland, Kyle H.] Holland Sci Inc, Lincoln, NE 68516 USA.
[Lamb, David W.] Univ New England, Precis Agr Res Grp, Armidale, NSW 2351, Australia.
[Schepers, James S.] Univ Nebraska, USDA ARS, Lincoln, NE 68583 USA.
[Schepers, James S.] Univ Nebraska, Dept Agron & Hort, Lincoln, NE USA.
RP Holland, KH (reprint author), Holland Sci Inc, Lincoln, NE 68516 USA.
EM kholland@hollandscientific.com; dlamb@une.edu.au;
james.schepers@gmail.com
FU Cooperative Research Centre for Spatial Information (CRCSI) under the
Australian Governments Cooperative Research Centres Program
FX This work was supported in part by the Cooperative Research Centre for
Spatial Information (CRCSI) under the Australian Governments Cooperative
Research Centres Program.
NR 26
TC 19
Z9 19
U1 1
U2 17
PU IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC
PI PISCATAWAY
PA 445 HOES LANE, PISCATAWAY, NJ 08855-4141 USA
SN 1939-1404
J9 IEEE J-STARS
JI IEEE J. Sel. Top. Appl. Earth Observ. Remote Sens.
PD DEC
PY 2012
VL 5
IS 6
SI SI
BP 1793
EP 1802
DI 10.1109/JSTARS.2012.2198049
PG 10
WC Engineering, Electrical & Electronic; Geography, Physical; Remote
Sensing; Imaging Science & Photographic Technology
SC Engineering; Physical Geography; Remote Sensing; Imaging Science &
Photographic Technology
GA 063OL
UT WOS:000313009300024
ER
PT J
AU Zou, YX
Liao, ST
Shen, WZ
Liu, F
Tang, CM
Chen, CYO
Sun, YM
AF Zou, Yuxiao
Liao, Shentai
Shen, Weizhi
Liu, Fan
Tang, Cuiming
Chen, Chung-Yen Oliver
Sun, Yuanming
TI Phenolics and Antioxidant Activity of Mulberry Leaves Depend on Cultivar
and Harvest Month in Southern China
SO INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
LA English
DT Article
DE phenolics; antioxidant activity; mulberry leaf; cultivar; harvest month
ID ALBA L. LEAVES; MORUS-ALBA; POLYPHENOLS; FLAVONOIDS; CAPACITY; RADICALS;
EXTRACTS; FRUITS; WINES
AB To elucidate the effects of cultivar and harvest month on the phenolic content and antioxidant activity of mulberry leaves, four major phenolics, including chlorogenic acid (ChA), benzoic acid (BeA), rutin (Rut) and astragalin (Ast), were quantified using an HPLC-UV method. Leaves from six mulberry cultivars, collected from April to October, were analyzed. The antioxidant activity of mulberry leaves was assessed by ferric reducing antioxidant power (FRAP), hydroxyl radical scavenging activity (HSA) and superoxide radical scavenging activity (SSA) assays. The results showed that the total values of the four phenolic compounds ranged from 2.3 dry weight (DW) to 4.2 mg/g DW, with ChA being the major compound. The mean total phenol (TP) content of the six cultivars ranged from 30.4 equivalents (GAE) mg/g DW to 44.7 GAE mg/g DW. Mulberry leaves harvested in May had the highest TP content. Moreover, the antioxidant activities of mulberry leaves harvested from April to October differed noticeably. In general, Kq 10 and May were considered to be a better cultivar and harvest month concerning phenolic content and antioxidant activity, respectively.
C1 [Zou, Yuxiao; Sun, Yuanming] S China Agr Univ, Coll Food Sci, Guangzhou 510642, Guangdong, Peoples R China.
[Zou, Yuxiao; Liao, Shentai; Shen, Weizhi; Liu, Fan; Tang, Cuiming] Guangdong Acad Agr Sci, Sericulture & Agri Food Res Inst, Guangzhou 510610, Guangdong, Peoples R China.
[Chen, Chung-Yen Oliver] Tufts Univ, Antioxidants Res Lab, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
RP Sun, YM (reprint author), S China Agr Univ, Coll Food Sci, Guangzhou 510642, Guangdong, Peoples R China.
EM yuxiaozou@163.com; liaost@163.com; skyforce12@163.com;
liufan1234@gmail.com; tangcuiming@163.com; oliver.chen@tufts.edu;
ymsun@scau.edu.cn
FU National Natural Science Foundation, China [31071534]; Team Research
Program of Guangdong Natural Science Foundation, China
[9351064001000002]
FX We sincerely thank Cui-Ming Tang for her kind help in providing samples
and species/cultivar information. This study was supported by the
National Natural Science Foundation, China (No. 31071534) and the Team
Research Program of Guangdong Natural Science Foundation, China (No.
9351064001000002).
NR 26
TC 16
Z9 17
U1 0
U2 50
PU MDPI AG
PI BASEL
PA POSTFACH, CH-4005 BASEL, SWITZERLAND
SN 1422-0067
J9 INT J MOL SCI
JI Int. J. Mol. Sci.
PD DEC
PY 2012
VL 13
IS 12
BP 16544
EP 16553
DI 10.3390/ijms131216544
PG 10
WC Biochemistry & Molecular Biology; Chemistry, Multidisciplinary
SC Biochemistry & Molecular Biology; Chemistry
GA 058BC
UT WOS:000312608100062
PM 23443117
ER
PT J
AU Wren, DG
Kuhnle, RA
AF Wren, Daniel G.
Kuhnle, Roger A.
TI Effects of silt loading on turbulence and sand transport
SO INTERNATIONAL JOURNAL OF SEDIMENT RESEARCH
LA English
DT Article
DE Turbulence modulation; Bedforms; Dunes; Sand transport; Silt loading
ID SUSPENDED SEDIMENT; BOUNDARY-LAYER; LADEN FLOW; RESISTANCE; VELOCITY;
INTENSITY; CHANNELS; PARTICLES; BEDS; ADV
AB The transport of bed material and fluid turbulence are affected by many factors, including the fine sediment load being carried in a channel. Current research has focused on sand-sized particles introduced to gravel beds, while the effect of silt load on sand transport has received less attention. Experiments on the effects of silt load, in concentrations 0-26,900 mg l(-1), on sand transport were performed with a recirculating laboratory flume using three different sand bed configurations: ripples (Fr=0.24), dunes (Fr=0.34), and dunes (Fr=0.48). Three Acoustic Doppler Velocimeters were arranged to measure flow and turbulence quantities simultaneously in one vertical. Sand transport did not change in a consistent manner with increasing silt load, increasing up to 4,000 mg l(-1) for dunes (Fr=0.48) and up to 2,000 mg l(-1) for dunes (Fr=0.34) and then declining to near the clear water case with increasing silt concentrations. Silt addition for the ripple case caused a relatively small change in sand transport, decreasing with added silt up to approximately 2,000 mg l(-1) and then increasing as silt went up to approximately 10,000 mg l(-1). Dunes (Fr=0.48) decreased in length and height as silt increased, while dunes (Fr=0.34) did not show a consistent trend. A clear trend of decreasing Reynolds stress with increasing silt concentration was observed in the ripple case, with a 33% reduction in near-bed Reynolds stress caused by an 8,900 mg l(-1) concentration of silt.
C1 [Wren, Daniel G.; Kuhnle, Roger A.] USDA ARS, Natl Sedimentat Lab, Oxford, MS 38655 USA.
RP Wren, DG (reprint author), USDA ARS, Natl Sedimentat Lab, Oxford, MS 38655 USA.
EM daniel.wren@ars.usda.gov; roger.kuhnle@ars.usda.gov
FU USDA-Agricultural Research Service
FX The research reported here was supported by base funding from the
USDA-Agricultural Research Service. This work would not have been
possible without the diligent and capable efforts of Glenn Gray.
NR 30
TC 2
Z9 2
U1 3
U2 19
PU IRTCES
PI BEIJING
PA PO BOX 366, BEIJING, 100044, PEOPLES R CHINA
SN 1001-6279
J9 INT J SEDIMENT RES
JI Int. J. Sediment Res.
PD DEC
PY 2012
VL 27
IS 4
BP 451
EP 459
PG 9
WC Environmental Sciences; Water Resources
SC Environmental Sciences & Ecology; Water Resources
GA 062BT
UT WOS:000312894800004
ER
PT J
AU Ollinger, M
Ralston, K
Guthrie, J
AF Ollinger, Michael
Ralston, Katherine
Guthrie, Joanne
TI Location, School Characteristics, and the Cost of School Meals
SO JOURNAL OF AGRICULTURAL AND RESOURCE ECONOMICS
LA English
DT Article
DE National School Lunch Program; School Breakfast Program; school food
service costs per meal; school meals
ID DIET QUALITY; INDUSTRY; CONSOLIDATION; ECONOMIES; SCALE
AB The U.S. Department of Agriculture reimburses schools for meals provided to students participating in the National School Lunch and School Breakfast Programs. Reimbursement amounts are based on national average estimated costs of meal production. Food prices, however, vary across the United States, suggesting regional cost differences. This paper uses a quality-adjusted translog variable-cost function to show how costs per meal vary across twenty-one U.S. locations. The average deviation from national average cost is about $0.38 per meal; the average cost deviation attributed to input prices is $0.17 and the scale effect is $0.135.
C1 [Ollinger, Michael; Ralston, Katherine; Guthrie, Joanne] Econ Res Serv, USDA, Washington, DC USA.
RP Ollinger, M (reprint author), Econ Res Serv, USDA, Washington, DC USA.
NR 34
TC 0
Z9 0
U1 0
U2 12
PU WESTERN AGRICULTURAL ECONOMICS ASSOC
PI LOGAN
PA C/O DEEVON BAILEY, UTAH STATE UNIV, ECONOMICS DEPT, 3535 OLD MAIN HILL,
LOGAN, UT 84322-3530 USA
SN 1068-5502
J9 J AGR RESOUR ECON
JI J. Agric. Resour. Econ.
PD DEC
PY 2012
VL 37
IS 3
BP 379
EP 397
PG 19
WC Agricultural Economics & Policy; Economics
SC Agriculture; Business & Economics
GA 058FX
UT WOS:000312620600004
ER
PT J
AU Arnade, C
Cooper, J
AF Arnade, Carlos
Cooper, Joseph
TI Acreage Response under Varying Risk Preferences
SO JOURNAL OF AGRICULTURAL AND RESOURCE ECONOMICS
LA English
DT Article
DE acreage response; price variability; risk function; risk preference
ID EXPO-POWER UTILITY; DECISIONS; AVERSION; VARIANCE; PROGRAMS; BEHAVIOR;
FARMERS; MODELS
AB The assumption in standard expected utility model formulations that the coefficient of risk aversion is a constant is potentially unrealistic. This study takes the standard linear expected mean-variance problem and replaces the coefficient of risk aversion with a function of risk aversion, allowing risk to be depicted as a constraint that farmers face. Treating output prices as stochastic, the theoretical formulation measures the impact price variability itself has on risk preferences. Acreage response elasticities are also estimated as a function of prices and price variances using U.S. county-level data for corn, soybean, and wheat producers.
C1 [Arnade, Carlos; Cooper, Joseph] Econ Res Serv, USDA, Washington, DC USA.
RP Arnade, C (reprint author), Econ Res Serv, USDA, Washington, DC USA.
NR 36
TC 0
Z9 0
U1 0
U2 15
PU WESTERN AGRICULTURAL ECONOMICS ASSOC
PI LOGAN
PA C/O DEEVON BAILEY, UTAH STATE UNIV, ECONOMICS DEPT, 3535 OLD MAIN HILL,
LOGAN, UT 84322-3530 USA
SN 1068-5502
J9 J AGR RESOUR ECON
JI J. Agric. Resour. Econ.
PD DEC
PY 2012
VL 37
IS 3
BP 398
EP 414
PG 17
WC Agricultural Economics & Policy; Economics
SC Agriculture; Business & Economics
GA 058FX
UT WOS:000312620600005
ER
PT J
AU Stewart, H
Dong, DS
Carlson, A
AF Stewart, Hayden
Dong, Diansheng
Carlson, Andrea
TI Is Generational Change Contributing to the Decline in Fluid Milk
Consumption?
SO JOURNAL OF AGRICULTURAL AND RESOURCE ECONOMICS
LA English
DT Article
DE cohort effects; double hurdle models; generational effects; milk
consumption
ID FOOD; DEMAND
AB U.S. per capita fluid milk consumption has decreased since the 1940s. This study uses data collected between 1977 and 2008 from USDA surveys to investigate whether generational change is a contributing factor. More recent generations are found to consume less whole milk and less lower-fat milk, controlling for their age at the time of the survey and other consumption determinants. These findings underscore the importance of checkoff programs, the National School Lunch Program, and other initiatives that encourage children to consume milk. Our methodology may also be adapted to analyze long-run trends in the consumption of other foods.
C1 [Stewart, Hayden; Dong, Diansheng; Carlson, Andrea] Econ Res Serv, USDA, Washington, DC USA.
RP Stewart, H (reprint author), Econ Res Serv, USDA, Washington, DC USA.
NR 33
TC 3
Z9 3
U1 1
U2 8
PU WESTERN AGRICULTURAL ECONOMICS ASSOC
PI LOGAN
PA C/O DEEVON BAILEY, UTAH STATE UNIV, ECONOMICS DEPT, 3535 OLD MAIN HILL,
LOGAN, UT 84322-3530 USA
SN 1068-5502
J9 J AGR RESOUR ECON
JI J. Agric. Resour. Econ.
PD DEC
PY 2012
VL 37
IS 3
BP 435
EP 454
PG 20
WC Agricultural Economics & Policy; Economics
SC Agriculture; Business & Economics
GA 058FX
UT WOS:000312620600007
ER
PT J
AU Weber, KL
Thallman, RM
Keele, JW
Snelling, WM
Bennett, GL
Smith, TPL
McDaneld, TG
Allan, MF
Van Eenennaam, AL
Kuehn, LA
AF Weber, K. L.
Thallman, R. M.
Keele, J. W.
Snelling, W. M.
Bennett, G. L.
Smith, T. P. L.
McDaneld, T. G.
Allan, M. F.
Van Eenennaam, A. L.
Kuehn, L. A.
TI Accuracy of genomic breeding values in multibreed beef cattle
populations derived from deregressed breeding values and phenotypes
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE across-breed; beef cattle; genomic selection; molecular breeding value
ID GENETIC-RELATIONSHIP INFORMATION; ANGUS CATTLE; SELECTION; TRAITS;
PREDICTION; CARCASS; PERFORMANCE; ULTRASOUND; PARAMETERS; IMPACT
AB Genomic selection involves the assessment of genetic merit through prediction equations that allocate genetic variation with dense marker genotypes. It has the potential to provide accurate breeding values for selection candidates at an early age and facilitate selection for expensive or difficult to measure traits. Accurate across-breed prediction would allow genomic selection to be applied on a larger scale in the beef industry, but the limited availability of large populations for the development of prediction equations has delayed researchers from providing genomic predictions that are accurate across multiple beef breeds. In this study, the accuracy of genomic predictions for 6 growth and carcass traits were derived and evaluated using 2 multibreed beef cattle populations: 3,358 crossbred cattle of the U. S. Meat Animal Research Center Germplasm Evaluation Program (USMARC_GPE) and 1,834 high accuracy bull sires of the 2,000 Bull Project (2000_BULL) representing influential breeds in the U. S. beef cattle industry. The 2000_BULL EPD were deregressed, scaled, and weighted to adjust for between-and within-breed heterogeneous variance before use in training and validation. Molecular breeding values (MBV) trained in each multibreed population and in Angus and Hereford purebred sires of 2000_BULL were derived using the GenSel BayesC pi function (Fernando and Garrick, 2009) and cross-validated. Less than 10% of large effect loci were shared between prediction equations trained on (USMARC_GPE) relative to 2000_BULL although locus effects were moderately to highly correlated for most traits and the traits themselves were highly correlated between populations. Prediction of MBV accuracy was low and variable between populations. For growth traits, MBV accounted for up to 18% of genetic variation in a pooled, multibreed analysis and up to 28% in single breeds. For carcass traits, MBV explained up to 8% of genetic variation in a pooled, multibreed analysis and up to 42% in single breeds. Prediction equations trained in multibreed populations were more accurate for Angus and Hereford subpopulations because those were the breeds most highly represented in the training populations. Accuracies were less for prediction equations trained in a single breed due to the smaller number of records derived from a single breed in the training populations.
C1 [Thallman, R. M.; Keele, J. W.; Snelling, W. M.; Bennett, G. L.; Smith, T. P. L.; McDaneld, T. G.; Allan, M. F.; Kuehn, L. A.] ARS, USDA, US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
[Weber, K. L.; Van Eenennaam, A. L.] Univ Calif Davis, Dept Anim Sci, Davis, CA 95616 USA.
RP Kuehn, LA (reprint author), ARS, USDA, US Meat Anim Res Ctr, POB 166, Clay Ctr, NE 68933 USA.
EM larry.kuehn@ars.usda.gov
FU Agriculture and Food Research Initiative Competitive Grant from the USDA
National Institute of Food and Agriculture [2009-55205-05057]
FX This project was partially supported by Agriculture and Food Research
Initiative Competitive Grant no. 2009-55205-05057 from the USDA National
Institute of Food and Agriculture.
NR 40
TC 29
Z9 29
U1 0
U2 28
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 12
BP 4177
EP 4190
DI 10.2527/jas.2011-4586
PG 14
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 059XH
UT WOS:000312738400003
PM 22767091
ER
PT J
AU Weber, KL
Drake, DJ
Taylor, JF
Garrick, DJ
Kuehn, LA
Thallman, RM
Schnabel, RD
Snelling, WM
Pollak, EJ
Van Eenennaam, AL
AF Weber, K. L.
Drake, D. J.
Taylor, J. F.
Garrick, D. J.
Kuehn, L. A.
Thallman, R. M.
Schnabel, R. D.
Snelling, W. M.
Pollak, E. J.
Van Eenennaam, A. L.
TI The accuracies of DNA-based estimates of genetic merit derived from
Angus or multibreed beef cattle training populations
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE beef cattle; genomic selection; marker-assisted selection
ID GENOMIC BREEDING VALUES; RELATIONSHIP INFORMATION; DAIRY-CATTLE;
FEED-INTAKE; SELECTION; TRAITS; MODEL; PREDICTIONS; PERFORMANCE;
VALIDATION
AB Several organizations have developed prediction models for molecular breeding values (MBV) for quantitative growth and carcass traits in beef cattle using Bovine SNP50 genotypes and phenotypic or EBV data. Molecular breeding values for Angus cattle have been developed by IGENITY, Pfizer Animal Genetics, and a collaboration between researchers from Iowa State University and the University of Missouri-Columbia (ISU/UMC). The U. S. Meat Animal Research Center (USMARC; Clay Center, NE) has also developed MBV for 16 cattle breeds using 2 multibreed populations, the Germplasm Evaluation (GPE) Program and the 2,000 Bull Project (2K(ALL)), and 2 single breed subpopulations of the 2,000 Bull Project, Angus (2K(AN)) and Hereford (2K(HH)). In this study, these MBV were assessed relative to commercial ranch EBV estimated from the progeny phenotypes of Angus bulls naturally mated in multisire breeding pastures to commercial cows: 121 for USMARC MBV, 99 for ISU/UMC MBV, and 29 for IGENITY and Pfizer MBV (selected based on number of progeny carcass records). Five traits were analyzed: weaning weight (WW), HCW, marbling score (MS), rib-eye muscle area (RE), and, for IGENITY and Pfizer only, feedlot ADG. The average accuracies of MBV across traits were 0.38 +/- 0.05 for IGENITY, 0.61 +/- 0.12 for Pfizer, 0.46 +/- 0.12 for ISU/UMC, 0.16 +/- 0.04 for GPE, 0.26 +/- 0.05 for 2K(ALL), 0.24 +/- 0.04 for 2K(AN), and 0.02 +/- 0.12 for 2K(HH). Angus-based MBV (IGENITY, Pfizer, ISU/UMC, and 2K(AN)) explained larger proportions of genetic variance in this population than GPE, 2K(ALL), or 2K(HH) MBV for the same traits. In this data set, IGENITY, Pfizer, and ISU/UMC MBV were predictive of realized performance of progeny, and incorporation of that information into national genetic evaluations would be expected to improve EPD accuracy, particularly for young animals.
C1 [Weber, K. L.; Drake, D. J.; Van Eenennaam, A. L.] Univ Calif Davis, Dept Anim Sci, Davis, CA 95616 USA.
[Taylor, J. F.; Schnabel, R. D.] Univ Missouri, Div Anim Sci, Columbia, MO 65211 USA.
[Garrick, D. J.] Iowa State Univ, Dept Anim Sci, Ames, IA 50011 USA.
[Kuehn, L. A.; Thallman, R. M.; Snelling, W. M.; Pollak, E. J.] ARS, USDA, US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
RP Van Eenennaam, AL (reprint author), Univ Calif Davis, Dept Anim Sci, Davis, CA 95616 USA.
EM alvaneenennaam@ucdavis.edu
OI Schnabel, Robert/0000-0001-5018-7641; Garrick,
Dorian/0000-0001-8640-5372
FU USDA National Institute of Food and Agriculture [2009-55205-05057]; USDA
Cooperative State Research, Education and Extension Service
[2008-35205-04687, 2008-35205-18864]; USDA Agriculture and Food Research
Initiative [2009-65205-05635]
FX ALVE was supported by National Research Initiative Competitive Grant no.
2009-55205-05057 ("Integrating DNA information into beef cattle
production systems") from the USDA National Institute of Food and
Agriculture. JFT was supported by National Research Initiative grants
number 2008-35205-04687 and 2008-35205-18864 from the USDA Cooperative
State Research, Education and Extension Service and grant number
2009-65205-05635 from the USDA Agriculture and Food Research Initiative.
The authors gratefully acknowledge the cooperation of the 3 commercial
ranches (Cowley Ranch, Kuck Ranch, and Mole-Richardson Farms) and Harris
Ranch Beef Company (Coalinga, CA). We also acknowledge Sally Northcutt
and Bill Bowman of Angus Genetics Inc. for providing AAA EPD and
4-generation pedigrees for the herd bulls and for providing access to
the raw IGENITY molecular breeding values.
NR 46
TC 4
Z9 5
U1 0
U2 16
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 12
BP 4191
EP 4202
DI 10.2527/jas.2011-5020
PG 12
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 059XH
UT WOS:000312738400004
PM 22871929
ER
PT J
AU Huang, Y
Maltecca, C
Cassady, JP
Alexander, LJ
Snelling, WM
MacNeil, MD
AF Huang, Y.
Maltecca, C.
Cassady, J. P.
Alexander, L. J.
Snelling, W. M.
MacNeil, M. D.
TI Effects of reduced panel, reference origin, and genetic relationship on
imputation of genotypes in Hereford cattle
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE cattle; genomic; SNP
ID PREDICTION
AB The objective of this study was to investigate alternative methods of designing and using reduced SNP panels for imputing SNP genotypes. Two purebred Hereford populations, an experimental population known as Line 1 Hereford (L1, n = 240) and registered Hereford with American Hereford Association (AHA, n = 311), were used. Using different reference samples of 62 to 311 animals with 39,497 SNP on 29 autosomes and study samples of 57 or 62 animals for which genotypes were available for similar to 2,600 SNP (reduced panels), imputations were performed to predict the other similar to 36,900 loci that had been masked. An imputation package, including LinkPHASE and DAGPHASE, was used for imputation. Four reduced panels differing in minor allele frequency (MAF) and marker spacing were evaluated. Reduced panels included every 15th SNP across the genome (SNP_space), commercial Illumina Bovine3K Beadchip (SNP_3K), SNP with the highest MAF (SNP_MAF), and SNP with high MAF that were also evenly spaced across the genome (SNP_MS). Imputation accuracy was defined as the correlation of imputed genotypes and real genotypes. Reference samples were either from L1 or AHA. Among animals with genotypes, genetic relationships were estimated based on molecular marker genotypes or pedigree. Reduced panel design, number of animals in the reference sample, reference origin and genetic relationship between animals in the reference, and study samples all affected imputation accuracy (P < 0.001). Across genotyping schemes, imputed genotypes from SNP_MS had the greatest accuracy. A 0.1 increase in average pedigree relationship or average molecular relationship between reference and study samples increased imputation accuracy 10 to 20%. Using reference samples from the L1 population resulted in lower imputation accuracy than using reference samples from the admixed population AHA (P < 0.001). Increasing the number of animals in the reference panel by 100 individuals increased imputation accuracy by 8% when pedigree relationship was used as a covariate and 6% when molecular relationship was used as a covariate. We concluded that imputation accuracy would be increased through optimization of reduced panel design and genotyping strategy.
C1 [Huang, Y.; Maltecca, C.; Cassady, J. P.] N Carolina State Univ, Dept Anim Sci, Raleigh, NC 27606 USA.
[Alexander, L. J.; MacNeil, M. D.] ARS, USDA, Ft Keogh Livestock & Range Res Lab, Miles City, MT 59301 USA.
[Snelling, W. M.] ARS, USDA, US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
RP Cassady, JP (reprint author), N Carolina State Univ, Dept Anim Sci, Raleigh, NC 27606 USA.
EM joe_cassady@ncsu.edu
NR 13
TC 11
Z9 11
U1 1
U2 7
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 12
BP 4203
EP 4208
DI 10.2527/jas.2011-4728
PG 6
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 059XH
UT WOS:000312738400005
PM 22859753
ER
PT J
AU Golden, GJ
Hussey, AM
Kimball, BA
AF Golden, G. J.
Hussey, A. M.
Kimball, B. A.
TI Do gastrointestinal taste receptors contribute to associative learning
and foraging behavior?
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE conditioned taste aversion; foraging behavior; gastric taste; herbivory;
reflux
ID C-FOS INDUCTION; CONDITIONED AVERSION; ENTEROENDOCRINE CELLS; LARGE
HERBIVORES; MAMMALIAN GUT; EXPRESSION; TRACT; FLAVOR; SACCHARIN; T1R3
AB Foraging behavior is an expression of learning, context, and experience arising from integration of sensory information obtained during feeding with postingestive consequences of food ingestion. Although it has been well established that gustatory and olfactory systems of the mouth and nose provide sensory information to the consumer (in the form of flavor), sweet and bitter taste receptors have recently been identified in the intestinal tract of humans and rodents. It remains possible that sensory information generated in the gut could contribute to the learning process. Thus, a series of experiments was conducted to determine if classical associative learning occurs when the conditional stimulus circumvents oronasal presentation via direct delivery to the gut or peritoneal cavity. Mice receiving an intragastric infusion of 5 mM sodium saccharin immediately followed by LiCl administration demonstrated a significant decrease in preference for 5 mM saccharin in 4 consecutive 23h, 2-bottle preference tests versus water (P = 0.0053). Saccharin was highly preferred in mice receiving intragastric (IG) saccharin only or interperitoneal (i.p.) injection of LiCl only. This reduced preference indicated that mice "tasted" saccharin infused into the gut. However, efforts to replicate with a reduced infusion volume failed to result in decreased preference. To understand if there were alternative pathways for oral detection of infused saccharin, mice received intragastric infusions (5.4 mM) and i.p. injections (10.8 mM) of sodium fluorescein. Fluorescence was observed from the tongues and esophagi of mice infused with volumes of 0.5 mL or more or injected with volumes of 0.25 mL or greater. Interperitoneal injections of 5 mM saccharin in mice resulted in reduced preference for 5 mM saccharin presented orally in 2-bottle preference tests (P = 0.0287). Oral delivery of a 500-fold less concentration of saccharin (0.01 mM) during conditioning resulted in a similar preference expression as shown in the initial IG experiment. These results demonstrate that although compounds may be tasted in the mouth absent of oral contact, associative learning is attenuated. Therefore, intestinal taste receptors are unlikely to participate directly in learning and recognition of foods during foraging events.
C1 [Golden, G. J.; Hussey, A. M.; Kimball, B. A.] Monell Chem Senses Ctr, Philadelphia, PA 19104 USA.
[Kimball, B. A.] USDA APHIS WS Natl Wildlife Res Ctr, Philadelphia, PA 19104 USA.
RP Golden, GJ (reprint author), Monell Chem Senses Ctr, 3500 Market St, Philadelphia, PA 19104 USA.
EM ggolden@monell.org
FU NIH [NIDCD 5T32DC000014-30]; USDA [CA-09-7442-0585]
FX The authors are grateful to Anthony Sclafani for allowing GJG to visit
his laboratory and study his intragastric catheter surgery technique. We
are also most grateful to Michael Tordoff for commenting on an earlier
version of this manuscript. Special thanks to Karen Yee and Linda
Wysocki for advice with histology and light microscopy and to Eleanora
Robinson, Danielle DeNofa, and Caroline Robiolle for technical
assistance. This work was supported by the NIH training grant NIDCD
5T32DC000014-30 (GJG) and USDA CA-09-7442-0585.
NR 41
TC 1
Z9 1
U1 1
U2 19
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 12
BP 4297
EP 4307
DI 10.2527/jas.2012-5089
PG 11
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 059XH
UT WOS:000312738400016
PM 22829611
ER
PT J
AU Hristov, AN
Callaway, TR
Lee, C
Dowd, SE
AF Hristov, A. N.
Callaway, T. R.
Lee, C.
Dowd, S. E.
TI Rumen bacterial, archaeal, and fungal diversity of dairy cows in
response to ingestion of lauric or myristic acid
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE dairy cow; microbial ecology; ruminal protozoa
ID HIGH-GRAIN DIET; OVINE RUMEN; METHANOGENIC BACTERIA; RUMINAL
FERMENTATION; CILIATE PROTOZOA; RUMINOCOCCUS-FLAVEFACIENS; MICROBIAL
DIVERSITY; HIGH-CONCENTRATE; DE-FAUNATION; FATTY-ACIDS
AB The objective of this experiment, part of a larger study, was to investigate changes in rumen bacterial, archaeal, and fungal diversity in cows fed medium-chain saturated fatty acids. In the main study, 6 lactating dairy cows were dosed intraruminally with 240 g/(cow.d) of stearic (SA, control), lauric (LA), or myristic (MA) acid in a replicated 3 x 3 Latin square design trial. Experimental periods were 28 d, and cows were transfaunated between periods. Lauric acid decreased protozoal counts in the rumen by 96% compared with SA and MA (compared with SA, MA had no effect on ruminal protozoa). Whole ruminal contents samples were collected 2, 4, 6, 8, 10, 14, 18, and 24 h after the morning feeding on d 23 of each experimental period, stored frozen, and later composited by cow and period for microbial profile analyses, which involved tag-encoded flexible (FLX) amplicon pyrosequencing to provide diversity analyses of gastrointestinal bacterial, archaeal, and fungal populations of the cattle. The LA treatment, either directly or through its effect on protozoa, had a profound effect on the microbial ecology of the rumen. Ruminal populations of Prevotella, Bacteroides, and Enterorhabdus were decreased (P = 0.04 to P < 0.001) by more than 2-fold in LA treatments compared with SA, and Clostridium populations were decreased (P = 0.01) in LA-compared with MA-treated cows. The proportion of Ruminococcus was not affected by treatment, although the LA treatment had the least proportion of Ruminococcus. Proportions of Eubacterium, Butyrivibrio, Olsenella, and Lactobacillus genera were increased (P = 0.03 to 0.01) by LA compared with MA or SA. The LA treatment, possibly through its effect on protozoa physically associated with archaea, resulted in an increase (P = 0.01) in the archaeal methanogenic genus Methanosphaera and a decrease (P = 0.01) in Methanobrevibacter. Few changes in fungal populations caused by treatment were detected. Collectively, results indicate that LA, either through antiprotozoal or direct antimicrobial effects, altered bacterial and archaeal populations in the rumen of dairy cows, but effects on fungal populations were not clear.
C1 [Hristov, A. N.; Lee, C.] Penn State Univ, Dept Dairy & Anim Sci, University Pk, PA 16802 USA.
[Callaway, T. R.] USDA ARS, Food & Feed Safety Res Unit, College Stn, TX 77845 USA.
[Dowd, S. E.] MR DNA Mol Res LP, Shallowater, TX 79363 USA.
RP Hristov, AN (reprint author), Penn State Univ, Dept Dairy & Anim Sci, University Pk, PA 16802 USA.
EM anh13@psu.edu
FU Department of Dairy and Animal Science; College of Agricultural Science,
Pennsylvania State University
FX This study was supported by funds from the Department of Dairy and
Animal Science and the College of Agricultural Science, Pennsylvania
State University. The authors would like to thank the staff of the
Department of Dairy and Animal Science Dairy Center for their
conscientious care of the experimental cows.
NR 65
TC 15
Z9 18
U1 4
U2 52
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 12
BP 4449
EP 4457
DI 10.2527/jas.2011-4624
PG 9
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 059XH
UT WOS:000312738400033
PM 22952367
ER
PT J
AU Welch, KD
Gardner, DR
Pfister, JA
Panter, KE
Zieglar, J
Hall, JO
AF Welch, K. D.
Gardner, D. R.
Pfister, J. A.
Panter, K. E.
Zieglar, J.
Hall, J. O.
TI A comparison of the metabolism of the abortifacient compounds from
Ponderosa pine needles in conditioned versus naive cattle
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE agathic acid; cattle; isocupressic acid; juniper bark; ponderosa pine
needles rumen culture
ID ISOCUPRESSIC ACID; BEEF-COWS; INGESTION; SAGEBRUSH; ABORTION; SHEEP
AB Isocupressic acid (ICA) is the abortifacient compound in ponderosa pine (Pinus ponderosa L.) needles, which can cause late-term abortions in cattle (Bos taurus). However, cattle rapidly metabolize ICA to agathic acid (AGA) and subsequent metabolites. When pine needles are dosed orally to cattle, no ICA is detected in their serum, whereas AGA is readily detected. Recent research has demonstrated that AGA is also an abortifacient compound in cattle. The observation has been made that when cattle are dosed with labdane acids for an extended time, the concentration of AGA in serum increases for 1 to 2 d but then decreases to baseline after 5 to 6 d even though they are still being dosed twice daily. Therefore, in this study we investigated whether cattle conditioned to pine needles metabolize ICA, and its metabolites, faster than naive cattle. Agathic acid was readily detected in the serum of naive cattle fed ponderosa pine needles, whereas very little AGA was detected in the serum of cattle conditioned to pine needles. We also compared the metabolism of ICA in vitro using rumen cultures from pine-needle-conditioned and naive cattle. In the rumen cultures from conditioned cattle, AGA concentrations were dramatically less than rumen cultures from naive cattle. Thus, an adaptation occurs to cattle conditioned to pine needles such that the metabolism AGA by the rumen microflora is altered.
C1 [Welch, K. D.; Gardner, D. R.; Pfister, J. A.; Panter, K. E.] USDA ARS, Poisonous Plant Res Lab, Logan, UT 84341 USA.
[Zieglar, J.] Washington State Univ, Pullman, WA 99163 USA.
[Hall, J. O.] Utah State Univ, Logan, UT 84322 USA.
RP Welch, KD (reprint author), USDA ARS, Poisonous Plant Res Lab, Logan, UT 84341 USA.
EM Kevin.Welch@ars.usda.gov
NR 23
TC 3
Z9 3
U1 0
U2 6
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 12
BP 4611
EP 4617
DI 10.2527/jas.2012-5232
PG 7
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 059XH
UT WOS:000312738400050
PM 22696617
ER
PT J
AU Kronberg, SL
Scholljegerdes, EJ
Murphy, EJ
Ward, RE
Maddock, TD
Schauer, CS
AF Kronberg, S. L.
Scholljegerdes, E. J.
Murphy, E. J.
Ward, R. E.
Maddock, T. D.
Schauer, C. S.
TI Treatment of flaxseed to reduce biohydrogenation of alpha-linolenic acid
by ruminal microbes in sheep and cattle, and increase n-3 fatty acid
concentrations in red meat
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE cattle; linseed; n-3 fatty acids; omega-3 fatty acids; protected; sheep
ID FISH-OIL; MUSCLE; LIPIDS; BEEF; PLASMA; HEALTH; TISSUE; DISEASE; DIET
AB The objective of the study was to determine if flaxseed treated with a formaldehyde-free process could increase n-3 fatty acid (FA) concentrations in lamb and steer muscle. Twenty-four lambs (initial BW 43.8 +/- 4.4 kg) were randomly divided into 4 groups for a 90-d trial. One treatment group (FLX) was fed 136 g/d of nontreated ground flaxseed; another treatment group (FLXT1) was fed 136 g/d of flaxseed treated to protect a-linolenic acid (ALA) from microbial hydrogenation; a third treatment group (FLXT2) was fed 136 g/d of a second treated flaxseed; and a fourth treatment group (CNTL) was fed corn and soybean meal with similar CP and DE levels as the other treatments. Intake of treated flaxseed raised plasma triacylglycerol concentrations of ALA more (P < 0.01) than intake of nontreated flaxseed did, but there was no difference (P = 0.65) in ALA increase between FLXT1 and FLXT2. Intake of treated flaxseed increased (P <= 0.05) muscle phospholipid ALA and eicosapentaenoic acid concentrations more than nontreated flaxseed did. There were no differences in muscle phospholipid n-3 concentrations between FLXT1 and FLXT2. Ten yearling steers (initial BW 437 +/- 18 kg) were randomly divided into 2 groups. One group was fed ground flaxseed (0.05% of steer BW/d; FLX; n = 5) and a second group was fed treated flaxseed at the same rate (FLXT; n = 5). The 175-d trial was divided into 2 periods: high roughage, low concentrate period followed by high concentrate, low roughage period. Steers were fed rations that were formulated to be isonitrogenous, isocaloric, and isolipidic. There was no difference (P = 0.37) in increase of ALA in blood plasma of FLX and FLXT groups by the end of the first period. However, FLXT had 16% greater (P = 0.003) concentration of ALA in their plasma during the second period. Muscle phospholipid n-3 FA were not greater (P >= 0.55) for steers in the FLXT group. Intake of treated flaxseed raised n-3 concentrations in blood and muscle of sheep, and in blood of cattle but did not raise n-3 FA concentrations in muscle of steers. Supplementing the diets of forage-fed lambs with flaxseed treated to reduce hydrogenation of ALA by ruminal microbes can increase concentrations of n-3 FA in the muscle of lambs.
C1 [Kronberg, S. L.] USDA ARS, No Great Plains Res Lab, Mandan, ND 58554 USA.
[Scholljegerdes, E. J.] New Mexico State Univ, Dept Anim & Range Sci, Las Cruces, NM 88003 USA.
[Murphy, E. J.] Univ N Dakota, Dept Pharmacol, Grand Forks, ND 58202 USA.
[Murphy, E. J.] Univ N Dakota, Dept Physiol & Therapeut, Grand Forks, ND 58202 USA.
[Murphy, E. J.] Univ N Dakota, Dept Chem, Grand Forks, ND 58202 USA.
[Ward, R. E.] Utah State Univ, Dept Nutr & Food Sci, Logan, UT 84322 USA.
[Maddock, T. D.] Cattle Concepts Inc, Fargo, ND 58102 USA.
[Schauer, C. S.] N Dakota State Univ, Hettinger Res Extens Ctr, Hettinger, ND 58639 USA.
RP Kronberg, SL (reprint author), USDA ARS, No Great Plains Res Lab, POB 459, Mandan, ND 58554 USA.
EM scott.kronberg@ars.usda.gov
RI Ward, Robert/E-1250-2011
OI Ward, Robert/0000-0002-6981-4040
NR 22
TC 3
Z9 3
U1 1
U2 21
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 12
BP 4618
EP 4624
DI 10.2527/jas.2011-4774
PG 7
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 059XH
UT WOS:000312738400051
PM 22696616
ER
PT J
AU Stackhouse-Lawson, KR
Rotz, CA
Oltjen, JW
Mitloehner, FM
AF Stackhouse-Lawson, K. R.
Rotz, C. A.
Oltjen, J. W.
Mitloehner, F. M.
TI Carbon footprint and ammonia emissions of California beef production
systems
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE ammonia; beef cattle; carbon footprint; farm model; greenhouse gas;
simulation
ID GREENHOUSE-GAS EMISSIONS; LIFE-CYCLE ASSESSMENT; METHANE EMISSIONS;
REDUCTION STRATEGIES; DAIRY FARMS; ENVIRONMENTAL IMPACTS; DIOXIDE
EMISSIONS; FEEDLOT CATTLE; GRAZING CATTLE; EFFICIENCY
AB Beef production is a recognized source of greenhouse gas (GHG) and ammonia (NH3) emissions; however, little information exists on the net emissions from beef production systems. A partial life cycle assessment (LCA) was conducted using the Integrated Farm System Model (IFSM) to estimate GHG and NH3 emissions from representative beef production systems in California. The IFSM is a process-level farm model that simulates crop growth, feed production and use, animal growth, and the return of manure nutrients back to the land to predict the environmental impacts and economics of production systems. Ammonia emissions are determined by summing the emissions from animal housing facilities, manure storage, field applied manure, and direct deposits of manure on pasture and rangeland. All important sources and sinks of methane, nitrous oxide, and carbon dioxide are predicted from primary and secondary emission sources. Primary sources include enteric fermentation, manure, cropland used in feed production, and fuel combustion. Secondary emissions occur during the production of resources used on the farm, which include fuel, electricity, machinery, fertilizer, and purchased animals. The carbon footprint is the net exchange of all GHG in carbon dioxide equivalent (CO(2)e) units per kg of HCW produced. Simulated beef production systems included cow-calf, stocker, and feedlot phases for the traditional British beef breeds and calf ranch and feedlot phases for Holstein steers. An evaluation of differing production management strategies resulted in ammonia emissions ranging from 98 +/- 13 to 141 +/- 27 g/kg HCW and carbon footprints of 10.7 +/- 1.4 to 22.6 +/- 2.0 kg CO(2)e/kg HCW. Within the British beef production cycle, the cow-calf phase was responsible for 69 to 72% of total GHG emissions with 17 to 27% from feedlot sources. Holstein steers that entered the beef production system as a by-product of dairy production had the lowest carbon footprint because the emissions associated with their mothers were primarily attributed to milk rather than meat production. For the Holstein system, the feedlot phase was responsible for 91% of the total GHG emission, while the calf-ranch phase was responsible for 7% with the remaining 2% from transportation. This simulation study provides baseline emissions data for California beef production systems and indicates where mitigation strategies can be most effective in reducing emissions.
C1 [Stackhouse-Lawson, K. R.; Oltjen, J. W.; Mitloehner, F. M.] Univ Calif Davis, Dept Anim Sci, Davis, CA 95616 USA.
[Rotz, C. A.] USDA ARS, Pasture Syst & Watershed Management Res Unit, University Pk, PA 16802 USA.
RP Mitloehner, FM (reprint author), Univ Calif Davis, Dept Anim Sci, Davis, CA 95616 USA.
EM fmmitloehner@ucdavis.edu
NR 49
TC 18
Z9 19
U1 7
U2 139
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 12
BP 4641
EP 4655
DI 10.2527/jas.2011-4653
PG 15
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 059XH
UT WOS:000312738400054
PM 22952361
ER
PT J
AU Stackhouse, KR
Rotz, CA
Oltjen, JW
Mitloehner, FM
AF Stackhouse, K. R.
Rotz, C. A.
Oltjen, J. W.
Mitloehner, F. M.
TI Growth-promoting technologies decrease the carbon footprint, ammonia
emissions, and costs of California beef production systems
SO JOURNAL OF ANIMAL SCIENCE
LA English
DT Article
DE ammonia; beef cattle; carbon footprint; farm simulation; greenhouse gas;
mitigation
ID DAIRY PRODUCTION SYSTEMS; CARCASS CHARACTERISTICS; ENVIRONMENTAL-IMPACT;
FEEDLOT PERFORMANCE; MEAT QUALITY; AGONISTS; STRATEGIES; CATTLE
AB Increased animal performance is suggested as one of the most effective mitigation strategies to decrease greenhouse gas (GHG) and ammonia (NH3) emissions from livestock production per unit of product produced. Little information exists, however, on the effects of increased animal productivity on the net decrease in emission from beef production systems. A partial life cycle assessment (LCA) was conducted using the Integrated Farm System Model (IFSM) to estimate GHG and NH3 emissions from representative beef production systems in California that use various management technologies to enhance animal performance. The IFSM is a farm process model that simulates crop growth, feed production, animal performance, and manure production and handling through time to predict the performance, economics, and environmental impacts of production systems. The simulated beef production systems compared were 1) Angus-natural, with no use of growth-enhancing technologies, 2) Angus-implant, with ionophore and growth-promoting implant (e. g., estrogen/trenbolone acetate-based) application, 3) Angus-beta 2-adrenergic agonists (BAA; e. g., zilpaterol), with ionophore, growth-promoting implant, and BAA application, 4) Holstein-implant, with growth implant and ionophore application, and 5) Holstein-BAA, with ionophore, growth implant, and BAA use. During the feedlot phase, use of BAA decreased NH3 emission by 4 to 9 g/kg HCW, resulting in a 7% decrease in NH3 loss from the full production system. Combined use of ionophore, growth implant, and BAA treatments decreased NH3 emission from the full production system by 14 g/kg HCW, or 13%. The C footprint of beef was decreased by 2.2 kg carbon dioxide equivalent (CO(2)e)/kg HCW using all the growth-promoting technologies, and the Holstein beef footprint was decreased by 0.5 kg CO(2)e/kg HCW using BAA. Over the full production systems, these decreases were relatively small at 9% and 5% for Angus and Holstein beef, respectively. The growth-promoting technologies we evaluated are a cost-effective way to mitigate GHG and NH3 emissions, but naturally managed cattle can bring a similar net return to Angus cattle treated with growth-promoting technologies when sold at an 8% greater premium price.
C1 [Stackhouse, K. R.; Oltjen, J. W.; Mitloehner, F. M.] Univ Calif Davis, Dept Anim Sci, Davis, CA 95616 USA.
[Rotz, C. A.] USDA ARS, Pasture Syst & Watershed Management Res Unit, University Pk, PA 16802 USA.
RP Mitloehner, FM (reprint author), Univ Calif Davis, Dept Anim Sci, Davis, CA 95616 USA.
EM fmmitloehner@ucdavis.edu
NR 22
TC 4
Z9 5
U1 5
U2 69
PU AMER SOC ANIMAL SCIENCE
PI CHAMPAIGN
PA PO BOX 7410, CHAMPAIGN, IL 61826-7410 USA
SN 0021-8812
EI 1525-3163
J9 J ANIM SCI
JI J. Anim. Sci.
PD DEC
PY 2012
VL 90
IS 12
BP 4656
EP 4665
DI 10.2527/jas.2011-4654
PG 10
WC Agriculture, Dairy & Animal Science
SC Agriculture
GA 059XH
UT WOS:000312738400055
PM 22952364
ER
PT J
AU Alfieri, JG
Blanken, PD
AF Alfieri, J. G.
Blanken, P. D.
TI How representative is a point? The spatial variability of surface energy
fluxes across short distances in a sand-sagebrush ecosystem
SO JOURNAL OF ARID ENVIRONMENTS
LA English
DT Article
DE Evapotranspiration; Land-atmosphere interactions; Measurement
uncertainty; Sagebrush steppe; Semi-arid ecosystems; Spatial
heterogeneity; Surface energy flux
ID CARBON-DIOXIDE; WATER-VAPOR; FIELD CAMPAIGN; VEGETATION; LAND; SOIL;
EVAPOTRANSPIRATION; CANOPY; MODEL; HEAT
AB During the summer of 2001, the spatial variation of the surface energy fluxes across short distances, 16 m to 32 m, was examined over a sagebrush steppe ecosystem in northeastern Colorado. Two eddy covariance micrometeorological stations were used to test the hypothesis that fine-scale variations in the physical properties of the site result in significant variation in the surface energy balance. Through a comparative analysis of the flux measurements, it was found that statistically significant variations in the sensible, latent and soil heat fluxes were present at the study site. These variations were linked to small changes in the near-surface soil moisture content and leaf area index. The results of this study suggest there may be substantial uncertainty surrounding a single point measurement when it is used to represent the exchange of heat and moisture over a large area. This uncertainty must be considered when using in-situ measurements to evaluate remote sensing products or numerical models. Published by Elsevier Ltd.
C1 [Alfieri, J. G.] ARS, USDA, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
[Blanken, P. D.] Univ Colorado, Dept Geog, Boulder, CO 80309 USA.
RP Alfieri, JG (reprint author), ARS, USDA, Hydrol & Remote Sensing Lab, 10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM joe.alfieri@ars.usda.gov
OI BLANKEN, PETER/0000-0002-7405-2220
FU University of Colorado UROP Program; National Science Foundation
[ATM-9724570]
FX The authors would like to thank M.M. O'Connell for her assistance
collecting the observational data used in this study. They would also
like to thank M.A. LeMone, R.L. Grossman, T.T. Warner, T. Horst, W.P.
Kustas, and J.H. Prueger for their insightful discussions during the
course of this research. Finally, the authors would like to acknowledge
funding for this research from the University of Colorado UROP Program
and the National Science Foundation (ATM-9724570).
NR 53
TC 2
Z9 2
U1 0
U2 28
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0140-1963
J9 J ARID ENVIRON
JI J. Arid. Environ.
PD DEC
PY 2012
VL 87
BP 42
EP 49
DI 10.1016/j.jaridenv.2012.04.010
PG 8
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 059EK
UT WOS:000312687000006
ER
PT J
AU Boyd, CS
Davies, KW
AF Boyd, C. S.
Davies, K. W.
TI Differential seedling performance and environmental correlates in shrub
canopy vs. interspace microsites
SO JOURNAL OF ARID ENVIRONMENTS
LA English
DT Article
DE Heterogeneity; Islands of fertility; Resource island; Revegetation;
Sagebrush; Wildfire
ID STEPPE PLANT-COMMUNITIES; GREAT-BASIN; MOJAVE DESERT; BIG SAGEBRUSH;
PRESCRIBED FIRE; SPATIAL-DISTRIBUTION; PERENNIAL GRASS; BROMUS-TECTORUM;
SOIL NUTRIENTS; ORGANIC-MATTER
AB Shrubs in semi-arid ecosystems promote micro-environmental variation in a variety of soil properties and site characteristics. However, little is known regarding post-fire seedling performance and its association with environmental variation in former shrub canopy and interspace microsites. We compared post-fire seeding success and various soil properties important for seedling establishment between shrub canopy and interspace microsites in Wyoming big sagebrush (Artemisia tridentata) plant communities in southeast Oregon, U.S.A. We burned 5, 20 x 20 m sites and established paired canopy and interspace micro-transects seeded with bluebunch wheatgrass (Pseudoroegneria spicata, 193 seeds/m) or crested wheatgrass (Agropyron cristatum, 177 seeds/m). At one year post-fire, seedling density was 69% higher (p = 0.012) for crested wheatgrass (compared to bluebunch wheatgrass) and 75% higher (p = 0.019) for interspace microsites (compared to canopy). However, tiller and leaf area production were over twice as high (p < 0.05) in canopy microsites. Soil color and soil temperature, explained 19-32% of variation in seedling performance metrics. Shrub effects on seeding success are complex and interact with abiotic disturbances, but patterns of increased seedling performance in canopy microsites and their relationships to soil variables may suggest tactics for increasing success of restoration practices. Published by Elsevier Ltd.
C1 [Boyd, C. S.; Davies, K. W.] ARS, USDA, EOARC, Burns, OR 97720 USA.
RP Boyd, CS (reprint author), ARS, USDA, EOARC, 67826-A Hwy 205, Burns, OR 97720 USA.
EM Chad.Boyd@oregonstate.edu
NR 67
TC 8
Z9 8
U1 1
U2 34
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0140-1963
J9 J ARID ENVIRON
JI J. Arid. Environ.
PD DEC
PY 2012
VL 87
BP 50
EP 57
DI 10.1016/j.jaridenv.2012.06.010
PG 8
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 059EK
UT WOS:000312687000007
ER
PT J
AU Fombong, AT
Teal, PEA
Arbogast, RT
Ndegwa, PN
Irungu, LW
Torto, B
AF Fombong, Ayuka T.
Teal, Peter E. A.
Arbogast, Richard T.
Ndegwa, Paul N.
Irungu, Lucy W.
Torto, Baldwyn
TI Chemical Communication in the Honey Bee Scarab Pest Oplostomus haroldi:
Role of (Z)-9-Pentacosene
SO JOURNAL OF CHEMICAL ECOLOGY
LA English
DT Article
DE Scarabaeidae; Oplostomus haroldi; honey bee; cuticular lipids, contact
sex pheromone; (Z)-9-pentacosene
ID CONTACT SEX-PHEROMONE; AETHINA-TUMIDA; COLEOPTERA SCARABAEIDAE;
LABORATORY CONDITIONS; APIS-MELLIFERA; BEHAVIOR; VOLATILES; BORER; L.
AB Oplostomus haroldi Witte belongs to a unique genus of afro-tropical scarabs that have associations with honey bee colonies, from which they derive vital nutrients. Although the attributes of the honey bee nest impose barriers to communication among nest invaders, this beetle still is able to detect conspecific mates for reproduction. Here, we show, through behavioral studies, that cuticular lipids serve as mate discrimination cues in this beetle. We observed five steps during mating: arrestment, alignment, mounting, and copulation, and a post-copulatory stage, lasting similar to 40-70 % of the total mating duration, that suggested mate guarding. Chemical analysis identified the same nine straight-chain alkanes (C-23-C-31), six methyl-branched alkanes (6), and five mono-unsaturated alkenes in the cuticular lipids of both sexes. Methyl alkanes constituted the major component (46 %) of male cuticular lipids, while mono-unsaturated alkenes were most abundant (53 %) in females. (Z)-9-Pentacosene was twice as abundant in females than in males, and similar to 20 fold more concentrated in beetles than in worker bees. In mating assays, (Z)-9-pentacosene elicited arrestment, alignment, and mounting, but not copulation, by male beetles. These results represent the first evidence of a contact sex pheromone in a scarab beetle. Such contact pheromones may be an essential, cryptic mechanism for arthropods associated with eusocial insects.
C1 [Fombong, Ayuka T.; Torto, Baldwyn] Int Ctr Insect Physiol & Ecol, Nairobi, Kenya.
[Fombong, Ayuka T.; Ndegwa, Paul N.; Irungu, Lucy W.] Univ Nairobi, Sch Biol Sci, Nairobi, Kenya.
[Teal, Peter E. A.; Arbogast, Richard T.] USDA ARS CMAVE, Gainesville, FL USA.
RP Torto, B (reprint author), Int Ctr Insect Physiol & Ecol, POB 30772-00100, Nairobi, Kenya.
EM btorto@icipe.org
FU German Academic Exchange Service (DAAD); United States Department of
Agriculture - Agricultural Research Service (USDA-ARS)
[SCA-586615-7-119F]
FX The authors thank Dr. Salifu D. for statistical advice, Mokua E. and
Obege E. for research assistance, Prof. J. G. Millar, University of
California-Davis for providing us with authentic (Z)-9 alkene standards,
and Kelley K. and Backer-Kelley K., University of Florida ICBR-EMBL, for
the scanning electron microscopy. The German Academic Exchange Service
(DAAD) funded ATF while project funding came from the United States
Department of Agriculture - Agricultural Research Service (USDA-ARS
project no. SCA-586615-7-119F).
NR 30
TC 5
Z9 5
U1 1
U2 41
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0098-0331
J9 J CHEM ECOL
JI J. Chem. Ecol.
PD DEC
PY 2012
VL 38
IS 12
BP 1463
EP 1473
DI 10.1007/s10886-012-0211-x
PG 11
WC Biochemistry & Molecular Biology; Ecology
SC Biochemistry & Molecular Biology; Environmental Sciences & Ecology
GA 061XY
UT WOS:000312884800001
PM 23149473
ER
PT J
AU McDaniel, KA
White, BL
Dean, LL
Sanders, TH
Davis, JP
AF McDaniel, Kristin A.
White, Brittany L.
Dean, Lisa L.
Sanders, Timothy H.
Davis, Jack P.
TI Compositional and Mechanical Properties of Peanuts Roasted to Equivalent
Colors using Different Time/Temperature Combinations
SO JOURNAL OF FOOD SCIENCE
LA English
DT Article
DE Maillard browning; peanuts; roasting; sugar; tocopherol
ID ANTIOXIDANT CAPACITY; MODEL SYSTEMS; FLAVOR; FOODS; HAZELNUTS; PRODUCTS;
RAW
AB Peanuts in North America and Europe are primarily consumed after dry roasting. Standard industry practice is to roast peanuts to a specific surface color (Hunter L-value) for a given application; however, equivalent surface colors can be attained using different roast temperature/time combinations, which could affect product quality. To investigate this potential, runner peanuts from a single lot were systematically roasted using 5 roast temperatures (147, 157, 167, 177, and 187 degrees C) and to Hunter L-values of 53 +/- 1, 48.5 +/- 1, and 43 +/- 1, corresponding to light, medium, and dark roasts, respectively. Moisture contents (MC) ranged from 0.41% to 1.70% after roasting. At equivalent roast temperatures, MC decreased as peanuts became darker; however, for a given color, MC decreased with decreasing roast temperature due to longer roast times required for specified color formation. Initial total tocopherol contents of expressed oils ranged from 164 to 559 mu g/g oil. Peanuts roasted at lower temperatures and darker colors had higher tocopherol contents. Glucose content was roast color and temperature dependent, while fructose was only temperature dependent. Soluble protein was lower at darker roast colors, and when averaged across temperatures, was highest when samples were roasted at 187 degrees C. Lysine content decreased with increasing roast color but was not dependent on temperature. MC strongly correlated with several components including tocopherols (R-2 = 0.67), soluble protein (R-2 = 0.80), and peak force upon compression (R-2 = 0.64). The variation in characteristics related to roast conditions is sufficient to suggest influences on final product shelf life and consumer acceptability.
C1 [McDaniel, Kristin A.; Dean, Lisa L.; Sanders, Timothy H.; Davis, Jack P.] N Carolina State Univ, Dept Food Bioproc & Nutr Sci, Raleigh, NC 27695 USA.
[White, Brittany L.; Dean, Lisa L.; Sanders, Timothy H.; Davis, Jack P.] N Carolina State Univ, Market Qual & Handling Res Unit, USDA ARS, Raleigh, NC 27695 USA.
RP Davis, JP (reprint author), N Carolina State Univ, Dept Food Bioproc & Nutr Sci, Schaub Hall, Raleigh, NC 27695 USA.
EM jack.davis@ars.usda.gov
RI Dean, Lisa/B-1463-2015
OI Dean, Lisa/0000-0002-2407-9548
NR 29
TC 11
Z9 13
U1 1
U2 41
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0022-1147
J9 J FOOD SCI
JI J. Food Sci.
PD DEC
PY 2012
VL 77
IS 12
BP C1292
EP C1298
DI 10.1111/j.1750-3841.2012.02979.x
PG 7
WC Food Science & Technology
SC Food Science & Technology
GA 057HK
UT WOS:000312553600029
PM 23145904
ER
PT J
AU Pepin, KM
VanDalen, KK
Mooers, NL
Ellis, JW
Sullivan, HJ
Root, JJ
Webb, CT
Franklin, AB
Shriner, SA
AF Pepin, K. M.
VanDalen, K. K.
Mooers, N. L.
Ellis, J. W.
Sullivan, H. J.
Root, J. J.
Webb, C. T.
Franklin, A. B.
Shriner, S. A.
TI Quantification of heterosubtypic immunity between avian influenza
subtypes H3N8 and H4N6 in multiple avian host species
SO JOURNAL OF GENERAL VIROLOGY
LA English
DT Article
ID MALLARDS ANAS-PLATYRHYNCHOS; WILD BIRDS; A VIRUSES; INDIVIDUAL
VARIATION; INFECTION; PROTECTION; CHALLENGE; EVOLUTION; CHICKENS;
ECOLOGY
AB Low-pathogenicity avian influenza virus (LPAIV) can lead to epizootics that cause economic losses in poultry or the emergence of human-infectious strains. LPAIVs experience a complex immunity landscape as they are endemic in numerous host species, and many antigenically distinct strains co-circulate. Prevention and control of emergence of detrimental strains requires an understanding of infection/transmission characteristics of the various subtypes in different hosts, including interactions between subtypes. In order to develop analytical frameworks for examining control efficacy, quantification of heterosubtypic immunity interactions is fundamental. However, these data are scarce, especially for wild avian subtypes in natural hosts. Consequently, in this study, three host species (mallards, quail and pheasants) were infected with two LPAIV subtypes isolated from wild birds: H3N8 and H4N6. The recovered hosts were also reinfected with the alternate subtype to measure the effects of heterosubtypic immunity. Oropharyngeal and cloacal swabs were collected and viral RNA load was quantified by real-time RT-PCR. For secondary infections in recovered hosts, peak viral load was up to four orders of magnitude lower and shedding length was up to 4 days shorter. However, both the magnitude and presence of heterosubtypic immunity varied across specific host species/subtype combinations. Using a mathematical model of virus replication, the variation in virus replication dynamics due to host individuals was quantified. It was found that accounting for individual heterogeneity is important for drawing accurate conclusions about treatment effects. These results are relevant for developing epidemiological models to inform control practices and for analysing virus replication data.
C1 [VanDalen, K. K.; Mooers, N. L.; Ellis, J. W.; Sullivan, H. J.; Root, J. J.; Franklin, A. B.; Shriner, S. A.] US Fish & Wildlife Serv, Natl Wildlife Res Ctr, USDA, Ft Collins, CO USA.
[Pepin, K. M.] Fogarty Int Ctr, Bethesda, MD USA.
[Pepin, K. M.; Webb, C. T.] Colorado State Univ, Ft Collins, CO 80523 USA.
RP Shriner, SA (reprint author), US Fish & Wildlife Serv, Natl Wildlife Res Ctr, USDA, Ft Collins, CO USA.
EM susan.a.shriner@aphis.usda.gov
OI Shriner, Susan/0000-0003-0349-7182; Ellis, Jeremy/0000-0003-4512-0906
FU RAPIDD program of the Science and Technology Directorate; US Department
of Homeland Security; Fogarty International Center, NIH
FX Thanks to Helen Sofaer for helpful discussion and sharing the code for
the non-linear mixed modelling methods in R. Thanks also to Nick Thomas,
Darcy Orahood and Alexis Freifeld for laboratory assistance, Daniel N.
Gossett and the National Wildlife Research Center Animal Care Staff for
animal husbandry, and Dr Gordon R. Gathright for veterinary support. K.
M. P and C. T. W were supported by the RAPIDD program of the Science and
Technology Directorate, US Department of Homeland Security, and the
Fogarty International Center, NIH.
NR 33
TC 11
Z9 13
U1 0
U2 7
PU SOC GENERAL MICROBIOLOGY
PI READING
PA MARLBOROUGH HOUSE, BASINGSTOKE RD, SPENCERS WOODS, READING RG7 1AG,
BERKS, ENGLAND
SN 0022-1317
J9 J GEN VIROL
JI J. Gen. Virol.
PD DEC
PY 2012
VL 93
BP 2575
EP 2583
DI 10.1099/vir.0.045427-0
PN 12
PG 9
WC Biotechnology & Applied Microbiology; Virology
SC Biotechnology & Applied Microbiology; Virology
GA 063UM
UT WOS:000313027500005
PM 22956733
ER
PT J
AU Nelson, MI
Detmer, SE
Wentworth, DE
Tan, Y
Schwartzbard, A
Halpin, RA
Stockwell, TB
Lin, XD
Vincent, AL
Gramer, MR
Holmes, EC
AF Nelson, Martha I.
Detmer, Susan E.
Wentworth, David E.
Tan, Yi
Schwartzbard, Aaron
Halpin, Rebecca A.
Stockwell, Timothy B.
Lin, Xudong
Vincent, Amy L.
Gramer, Marie R.
Holmes, Edward C.
TI Genomic reassortment of influenza A virus in North American swine,
1998-2011
SO JOURNAL OF GENERAL VIROLOGY
LA English
DT Article
ID UNITED-STATES; NEURAMINIDASE ACTIVITIES; H1N1; TRANSMISSION; PIGS;
HEMAGGLUTININ; MODEL
AB Revealing the frequency and determinants of reassortment among RNA genome segments is fundamental to understanding basic aspects of the biology and evolution of the influenza virus. To estimate the extent of genomic reassortment in influenza viruses circulating in North American swine, we performed a phylogenetic analysis of 139 whole-genome viral sequences sampled during 1998-2011 and representing seven antigenically distinct viral lineages. The highest amounts of reassortment were detected between the H3 and the internal gene segments (PB2, PB1, PA, NP, M and NS), while the lowest reassortment frequencies were observed among the H1 gamma, H1pdm and neuraminidase segments, particularly N1. Less reassortment was observed among specific haemagglutinin neuraminidase combinations that were more prevalent in swine, suggesting that some genome constellations may be evolutionarily more stable.
C1 [Nelson, Martha I.; Tan, Yi; Schwartzbard, Aaron; Holmes, Edward C.] NIH, Fogarty Int Ctr, Bethesda, MD 20892 USA.
[Detmer, Susan E.] Univ Saskatchewan, Western Coll Vet Med, Saskatoon, SK S7N 0W0, Canada.
[Wentworth, David E.; Halpin, Rebecca A.; Stockwell, Timothy B.; Lin, Xudong] J Craig Venter Inst, Rockville, MD 20850 USA.
[Vincent, Amy L.] USDA ARS, Virus & Prion Res Unit, Natl Anim Ctr, Ames, IA 50010 USA.
[Gramer, Marie R.] Univ Minnesota, Vet Diagnost Lab, St Paul, MN 55108 USA.
[Holmes, Edward C.] Penn State Univ, Dept Biol, Ctr Infect Dis Dynam, University Pk, PA 16802 USA.
RP Nelson, MI (reprint author), NIH, Fogarty Int Ctr, Bldg 10, Bethesda, MD 20892 USA.
EM nelsonma@mail.nih.gov
OI Wentworth, David/0000-0002-5190-980X; Holmes, Edward/0000-0001-9596-3552
FU Office of Global Affairs at the Department of Health and Human Services
(DHHS); National Institute of Allergy and Infectious Disease; National
Institutes of Health; Department of Health and Human Services
[HHSN272200900007C, HHSN266200700007C]
FX We are grateful to the pork producers and swine practitioners for
participating in the USDA Swine Influenza Surveillance System through
the National Animal Health Laboratory Network (NAHLN). We thank Dan
Weinberger and Cecile Viboud of the Fogarty International Center for
technical input. This research was conducted within the context of the
Multinational Influenza Seasonal Mortality Study (MISMS), an on-going
international collaborative effort to understand influenza epidemiology
and evolution, led by the Fogarty International Center, NTH, with
funding from the Office of Global Affairs at the Department of Health
and Human Services (DHHS) (A. S., E. C. H., M. I. N. and Y. T.). This
work was supported in part by funds from the National Institute of
Allergy and Infectious Disease, the National Institutes of Health and
the Department of Health and Human Services under contract no.
HHSN272200900007C (D. E. W., R. A. H., T. B. S. and X. L.) and
HHSN266200700007C (S. E. D. and M. R. G.).
NR 29
TC 15
Z9 15
U1 0
U2 18
PU SOC GENERAL MICROBIOLOGY
PI READING
PA MARLBOROUGH HOUSE, BASINGSTOKE RD, SPENCERS WOODS, READING RG7 1AG,
BERKS, ENGLAND
SN 0022-1317
J9 J GEN VIROL
JI J. Gen. Virol.
PD DEC
PY 2012
VL 93
BP 2584
EP 2589
DI 10.1099/vir.0.045930-0
PN 12
PG 6
WC Biotechnology & Applied Microbiology; Virology
SC Biotechnology & Applied Microbiology; Virology
GA 063UM
UT WOS:000313027500006
PM 22993190
ER
PT J
AU Franz, M
Eiden, M
Balkema-Buschmann, A
Greenlee, J
Schatzl, H
Fast, C
Richt, J
Hildebrandt, JP
Groschup, MH
AF Franz, Martin
Eiden, Martin
Balkema-Buschmann, Anne
Greenlee, Justin
Schatzl, Hermann
Fast, Christine
Richt, Juergen
Hildebrandt, Jan-Peter
Groschup, Martin H.
TI Detection of PrPSc in peripheral tissues of clinically affected cattle
after oral challenge with bovine spongiform encephalopathy
SO JOURNAL OF GENERAL VIROLOGY
LA English
DT Article
ID IN-VITRO AMPLIFICATION; MISFOLDING CYCLIC AMPLIFICATION;
CREUTZFELDT-JAKOB-DISEASE; NERVOUS-SYSTEM; PRION PROTEIN; INFECTIOUS
PRIONS; BSE INFECTIVITY; SCRAPIE; BRAIN; MICE
AB Bovine spongiform encephalopathy (BSE) is a fatal neurodegenerative prion disease that mainly affects cattle. Transmission of BSE to humans caused a variant form of Creutzfeldt Jakob disease. Following infection, the protease-resistant, disease-associated isoform of prion protein (PrPSc) accumulates in the central nervous system and in other tissues. Many countries have defined bovine tissues that may contain prions as specified risk materials, which must not enter the human or animal food chains and therefore must be discarded. Ultrasensitive techniques such as protein misfolding cyclic amplification (PMCA) have been developed to detect PrPSc when present in minuscule amounts that are not readily detected by other diagnostic methods such as immunohistochemistry or Western blotting. This study was conducted to determine when and where PrPSc can be found by PMCA in cattle orally challenged with BSE. A total of 48 different tissue samples from four cattle infected orally with BSE at various clinical stages of disease were examined using a standardized PMCA protocol. The protocol used brain homogenate from bovine PrP transgenic mice (Tgbov XV) as substrate and three consecutive rounds of PMCA. Using this protocol, PrPSc was found in the brain, spinal cord, nerve ganglia, optic nerve and Peyer's patches. The presence of PrPSc was confirmed in adrenal glands, as well as in mesenteric lymph nodes a finding that was reported recently by another group. Interestingly, additional positive results were obtained for the first time in the oesophagus, abomasum, rumen and rectum of clinically affected cattle.
C1 [Franz, Martin; Eiden, Martin; Balkema-Buschmann, Anne; Fast, Christine; Groschup, Martin H.] Friedrich Loeffler Inst, Inst Novel & Emerging Infect Dis, D-17493 Greifswald, Germany.
[Greenlee, Justin] ARS, Virus & Prion Res Unit, Natl Anim Dis Ctr, USDA, Ames, IA 50010 USA.
[Schatzl, Hermann] Univ Wyoming, Dept Vet Sci & Mol Biol, MICRO Mol Biol, Laramie, WY 82071 USA.
[Richt, Juergen] Kansas State Univ, Coll Vet Med, Manhattan, KS 66506 USA.
[Hildebrandt, Jan-Peter] Ernst Moritz Arndt Univ Greifswald, Inst Zool, D-17489 Greifswald, Germany.
RP Groschup, MH (reprint author), Friedrich Loeffler Inst, Inst Novel & Emerging Infect Dis, Sudufer 10, D-17493 Greifswald, Germany.
EM martin.groschup@fli.bund.de
OI Hildebrandt, Jan-Peter/0000-0001-7827-8481; Eiden,
Martin/0000-0002-1197-8288
FU German Federal Ministries of Food, Agriculture and Consumer Protection
(BMELV); US Department of Agriculture, Agriculture Research Service
FX This work was financially supported by grants from the German Federal
Ministries of Food, Agriculture and Consumer Protection (BMELV) and by
the US Department of Agriculture, Agriculture Research Service.
NR 39
TC 5
Z9 5
U1 1
U2 23
PU SOC GENERAL MICROBIOLOGY
PI READING
PA MARLBOROUGH HOUSE, BASINGSTOKE RD, SPENCERS WOODS, READING RG7 1AG,
BERKS, ENGLAND
SN 0022-1317
J9 J GEN VIROL
JI J. Gen. Virol.
PD DEC
PY 2012
VL 93
BP 2740
EP 2748
DI 10.1099/vir.0.044578-0
PN 12
PG 9
WC Biotechnology & Applied Microbiology; Virology
SC Biotechnology & Applied Microbiology; Virology
GA 063UM
UT WOS:000313027500024
PM 22915695
ER
PT J
AU Wu, SB
Meyer, RS
Whitaker, BD
Litt, A
Kennelly, EJ
AF Wu, Shi-Biao
Meyer, Rachel S.
Whitaker, Bruce D.
Litt, Amy
Kennelly, Edward J.
TI Antioxidant Glucosylated Caffeoylquinic Acid Derivatives in the Invasive
Tropical Soda Apple, Solanum viarum
SO JOURNAL OF NATURAL PRODUCTS
LA English
DT Article
ID CHLOROGENIC ACID; CARCINOGENESIS; FRUITS
AB Eggplant and related Solanum species contain abundant caffeoylquinic acid (CQA) derivatives. Fruit of the invasive species Solanum viarum Dunal contain numerous complex CQA derivatives, but only a few have been identified. The structures of two new compounds isolated from methanolic extracts of S. viarum fruit by C-18-HPLC-DAD were determined using 2D NMR and MS data. Both include two 5-CQA molecules joined by glucose via ester and glycosidic linkages. The structures of compounds 1 and 2 (viarumacids A and B) are, respectively, 5-caffeoyl- and 3-malonyl-5-caffeoyl-[4-(1 beta-[6-(5-caffeoyl)quinate]glucopyranosyl)]quinic acid. The antioxidant activities determined by ABTS(center dot+) and DPPH center dot assays were in the order 1 > 2 > 5-CQA.
C1 [Whitaker, Bruce D.] ARS, Food Qual Lab, Beltsville Agr Res Ctr W, USDA, Beltsville, MD 20705 USA.
[Wu, Shi-Biao; Kennelly, Edward J.] CUNY Herbert H Lehman Coll, Dept Biol Sci, Bronx, NY 10468 USA.
[Meyer, Rachel S.; Kennelly, Edward J.] CUNY, Grad Ctr, New York, NY 10016 USA.
[Meyer, Rachel S.; Litt, Amy] New York Bot Garden, Bronx, NY 10458 USA.
RP Whitaker, BD (reprint author), ARS, Food Qual Lab, Beltsville Agr Res Ctr W, USDA, Bldg 002,Room 117,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM bruce.whitaker@ars.usda.gov
NR 14
TC 9
Z9 10
U1 2
U2 24
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0163-3864
J9 J NAT PROD
JI J. Nat. Prod.
PD DEC
PY 2012
VL 75
IS 12
BP 2246
EP 2250
DI 10.1021/np300553t
PG 5
WC Plant Sciences; Chemistry, Medicinal; Pharmacology & Pharmacy
SC Plant Sciences; Pharmacology & Pharmacy
GA 061BY
UT WOS:000312823300030
PM 23237411
ER
PT J
AU Li, MH
Lam, F
Yeh, BJ
Skaggs, T
Rammer, D
Wacker, J
AF Li, Minghao
Lam, Frank
Yeh, Borjen
Skaggs, Tom
Rammer, Doug
Wacker, James
TI Modeling Force Transfer around Openings in Wood-Frame Shear Walls
SO JOURNAL OF STRUCTURAL ENGINEERING-ASCE
LA English
DT Article
DE Wood frame; Shear walls; openings; Force transfer; Finite-element model
AB This paper presented a modeling study on force transfer around openings (FTAO) in wood-frame shear walls detailed for FTAO. To understand the load transfer in the walls, this study used a finite-element model WALL2D, which is able to model individual wall components, including framing members, sheathing panels, oriented panel-frame nailed connections, framing connections, hold-down connections, and strap connections for reinforcing the corners of openings. The various wall models were validated through laboratory testing of 12 full-scale 2.44 x 3.66 m (8' x 12') shear wall configurations, which included a variety of opening types and sizes. At the wall design load level, the predicted strap forces around openings also agreed well with the test results, in contrast with four simplified analytical methods commonly used in designing shear walls with openings detailed for FTAO. This wall model thus presents a useful tool to check the accuracy of the simplified methods and develop a better understanding of the behavior of wood-frame shear walls with openings. DOI: 10.1061/(ASCE)ST.1943-541X.0000592. (C) 2012 American Society of Civil Engineers.
C1 [Li, Minghao; Lam, Frank] Univ British Columbia, Dept Wood Sci, Vancouver, BC V6T 1Z4, Canada.
[Skaggs, Tom] APA, Tech Serv, Prod Evaluat, Tacoma, WA 98466 USA.
[Rammer, Doug; Wacker, James] USDA, Forest Prod Lab, Madison, WI 53726 USA.
RP Li, MH (reprint author), Univ British Columbia, Dept Wood Sci, Vancouver, BC V6T 1Z4, Canada.
EM minghao.li@ubc.ca
FU APA-The Engineered Wood Association [09-11111138-117]; Forest Products
Laboratory [09-11111138-117]
FX This work is part of a joint research project of APA-The Engineered Wood
Association, USDA Forest Products Laboratory and the University of
British Columbia. The research fund provided under the joint venture
Agreement 09-11111138-117 between APA-The Engineered Wood Association
and Forest Products Laboratory is greatly acknowledged.
NR 20
TC 0
Z9 0
U1 0
U2 14
PU ASCE-AMER SOC CIVIL ENGINEERS
PI RESTON
PA 1801 ALEXANDER BELL DR, RESTON, VA 20191-4400 USA
SN 0733-9445
J9 J STRUCT ENG-ASCE
JI J. Struct. Eng.-ASCE
PD DEC
PY 2012
VL 138
IS 12
BP 1419
EP 1426
DI 10.1061/(ASCE)ST.1943-541X.0000592
PG 8
WC Construction & Building Technology; Engineering, Civil
SC Construction & Building Technology; Engineering
GA 060HG
UT WOS:000312766500001
ER
PT J
AU Chauhan, KR
Aldrich, JR
McCardle, PW
White, GB
Webb, RE
AF Chauhan, K. R.
Aldrich, J. R.
McCardle, P. W.
White, G. B.
Webb, R. E.
TI A FIELD BIOASSAY TO EVALUATE POTENTIAL SPATIAL REPELLENTS AGAINST
NATURAL MOSQUITO POPULATIONS
SO JOURNAL OF THE AMERICAN MOSQUITO CONTROL ASSOCIATION
LA English
DT Article
DE Behavioral responses; repellency; Aedes aegypti; catnip; DEET
ID INSECTICIDAL COILS; AEDES-AEGYPTI; CATNIP OIL; PROTECTION; CULICIDAE;
EFFICACY; DIPTERA; PLANTS; SMOKE
AB A field bioassay evaluating candidate chemicals as aerial repellents was developed and evaluated against natural mosquito populations in Beltsville, MD. The bioassay consisted of an attractive source surrounded by a grid of 16 septa containing a volatile candidate aerial repellent, compared with an attractive source without such a grid. The attractive source was a Centers for Disease Control and Prevention light trap supplemented with carbon dioxide. Significant sources of variation included weather, position, and the differential response of mosquito species. Despite these sources of variation, significant repellent responses were obtained for catnip oil, E,Z-dihydronepetalactone, and DEET.
C1 [Chauhan, K. R.; Aldrich, J. R.; McCardle, P. W.; White, G. B.; Webb, R. E.] ARS, Invas Insect Biocontrol & Behav Lab, USDA, Beltsville, MD 20705 USA.
RP Chauhan, KR (reprint author), ARS, Invas Insect Biocontrol & Behav Lab, USDA, Beltsville, MD 20705 USA.
NR 29
TC 6
Z9 6
U1 2
U2 16
PU AMER MOSQUITO CONTROL ASSOC
PI MOUNT LAUREL
PA 15000 COMMERCE PARKWAY, SUITE C, MOUNT LAUREL, NJ 08054 USA
SN 8756-971X
J9 J AM MOSQUITO CONTR
JI J. Am. Mosq. Control Assoc.
PD DEC
PY 2012
VL 28
IS 4
BP 301
EP 306
PG 6
WC Entomology
SC Entomology
GA 059BP
UT WOS:000312679700004
PM 23393752
ER
PT J
AU Fritz, BK
Hoffmann, WC
Haas, K
Bonds, J
AF Fritz, Bradley K.
Hoffmann, W. Clint
Haas, Keith
Bonds, Jane
TI CORRECTION OF SPRAY CONCENTRATION AND BIOASSAY CAGE PENETRATION DATA
SO JOURNAL OF THE AMERICAN MOSQUITO CONTROL ASSOCIATION
LA English
DT Article
DE Sampler efficiency; collection efficiency; field spray
ID MOSQUITO BIOASSAY; FILTRATION; IMPACTORS
AB Field trials were conducted to demonstrate the need for correcting sampled spray concentration data for sampler collection efficiencies and estimated spray exposure levels in mosquito bioassays for cage interference effects. A large spray block was targeted with aerial spray treatments of etofenprox in order to create a gradient in both spray concentration and mortality. Spray concentrations were measured using rotary impactors, which were coupled with caged bioassays. Measured spray concentrations were corrected for sampler collection efficiencies, which ranged from 55% to 15%. The corrected spray concentrations were then used to estimate the spray levels inside the bioassay cages. Given the cage type used (Townzen type) and wind speeds occurring during the spray trials (2-4 m/sec), concentrations inside of the bioassay cage ranged from 65% to 68% of that measured within the spray block. Not correcting for the combination of sampler collection efficiency and cage interference, underestimated spray concentration levels inside the cages were 76-90%. Correcting field-measured data allows not only better comparisons between differing studies, but can also provide better estimates of caged insect mortality versus actual spray concentration exposure levels.
C1 [Fritz, Bradley K.; Hoffmann, W. Clint] ARS, USDA, Areawide Pest Management Res Unit, College Stn, TX 77845 USA.
[Haas, Keith] Cent Life Sci, Dallas, TX 75234 USA.
[Bonds, Jane] Bonds Consulting Grp, Panama City Beach, FL 32408 USA.
RP Fritz, BK (reprint author), ARS, USDA, Areawide Pest Management Res Unit, 2771 F&B Rd, College Stn, TX 77845 USA.
FU Deployed War-Fighter Protection Research Program; US Department of
Defense through the Armed Forces Pest Management Board
FX This study was supported in part by a grant from the Deployed
War-Fighter Protection Research Program, funded by the US Department of
Defense through the Armed Forces Pest Management Board.
NR 13
TC 3
Z9 3
U1 0
U2 2
PU AMER MOSQUITO CONTROL ASSOC
PI MOUNT LAUREL
PA 15000 COMMERCE PARKWAY, SUITE C, MOUNT LAUREL, NJ 08054 USA
SN 8756-971X
J9 J AM MOSQUITO CONTR
JI J. Am. Mosq. Control Assoc.
PD DEC
PY 2012
VL 28
IS 4
BP 320
EP 322
PG 3
WC Entomology
SC Entomology
GA 059BP
UT WOS:000312679700009
PM 23393757
ER
PT J
AU Li, F
Zuo, RJ
Abad, J
Xu, DL
Bao, GL
Li, RH
AF Li, Fan
Zuo, Ruijuan
Abad, Jorge
Xu, Donglin
Bao, Gaili
Li, Ruhui
TI Simultaneous detection and differentiation of four closely related sweet
potato potyviruses by a multiplex one-step RT-PCR
SO JOURNAL OF VIROLOGICAL METHODS
LA English
DT Article
DE Multiplex RT-PCR; Sweet potato; SPFMV; SPVC; SPVG; SPV2
ID FEATHERY-MOTTLE-VIRUS; POLYMERASE CHAIN-REACTION; MOLECULAR VARIABILITY;
DISEASE SPVD; SWEET-POTATO-VIRUS-2; IDENTIFICATION; CRINIVIRUS;
SEQUENCES; STRAINS; PLANTS
AB Four closely related potyviruses, Sweet potato feathery mottle virus (SPFMV). Sweet potato virus C (SPVC), Sweet potato virus G (SPVG) and/or Sweet potato virus 2 (SPV2), are involved in sweet potato virus disease complexes worldwide. Identification and detection of these viruses are complicated by high similarity among their genomic sequences, frequent occurrence as mixed infections and low titer in many sweet potato cultivars. A one-tube multiplex reverse transcription-PCR (mRT-PCR) assay was developed for simultaneous detection and differentiation of SPFMV, SPVC, SPVG and SPV2. Four specific forward primers unique to each virus and one reverse primer based on the region conserved in all four viruses were selected and used in the assay. The mRT-PCR assay was optimized for primer concentration and cycling conditions. It was tested using sweet potato plants infected naturally with one to four target viruses and then evaluated using field samples collected from southwestern China. The mRT-PCR assay is reliable and sensitive as a simple, rapid and cost-effective method to detect these pathogens in sweet potato. This assay will be useful to quarantine and certification programs and virus surveys when large numbers of samples are tested. Published by Elsevier B.V.
C1 [Li, Fan; Xu, Donglin; Li, Ruhui] USDA ARS, Natl Germplasm Resources Lab, Beltsville, MD 20705 USA.
[Li, Fan; Zuo, Ruijuan; Bao, Gaili] Yunnan Agr Univ, Key Lab Agr Biodivers Pest Management, China Educ Minist, Kunming 650201, Peoples R China.
[Abad, Jorge] USDA APHIS PPQ PHP, Plant Germplasm Quarantine Program, Beltsville, MD 20705 USA.
RP Li, RH (reprint author), USDA ARS, Natl Germplasm Resources Lab, Beltsville, MD 20705 USA.
EM Ruhui.Li@ars.usda.gov
OI Xu, Dongin/0000-0002-5719-2950
NR 41
TC 9
Z9 12
U1 0
U2 11
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0166-0934
J9 J VIROL METHODS
JI J. Virol. Methods
PD DEC
PY 2012
VL 186
IS 1-2
BP 161
EP 166
DI 10.1016/j.jviromet.2012.07.021
PG 6
WC Biochemical Research Methods; Biotechnology & Applied Microbiology;
Virology
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
Virology
GA 060GD
UT WOS:000312763600029
PM 22827958
ER
PT J
AU Goupil, BA
Trent, AM
Bender, J
Olsen, KE
Morningstar, BR
Wunschmann, A
AF Goupil, Brad A.
Trent, Ava M.
Bender, Jeff
Olsen, Karen E.
Morningstar, Brenda R.
Wuenschmann, Arno
TI A LONGITUDINAL STUDY OF SALMONELLA FROM SNAKES USED IN A PUBLIC OUTREACH
PROGRAM
SO JOURNAL OF ZOO AND WILDLIFE MEDICINE
LA English
DT Article
DE Reptiles; rodent; Salmonella; salmonellosis; zoonosis
ID ARIZONAE GASTROENTERITIS; PET SNAKES; REPTILES; AMPHIBIANS; PREVALENCE;
INFECTION; WILDLIFE; OUTBREAK; TURTLES; SAMPLES
AB Snakes are considered to be a source of Salmonella infection for humans, but little is known about the actual serotype prevalence in healthy snakes over time. Twelve snakes involved in a public outreach program, representing seven different species, were tested weekly for shedding of Salmonella sp. over a period of 10 consecutive weeks. The snakes were housed in close proximity but in separate exhibits. Fresh fecal samples (when available) or cloacal swabs were cultured for Salmonella sp., and subsequent Salmonella isolates were serotyped. As representatives of the feed source, the feces of two mice and the intestines of one rat were cultured weekly. Fecal samples from 11 of the 12 snakes were positive for Salmonella at least once. Seven (58%) of 12 snakes were culture positive five times or more. The weekly prevalence of Salmonella shedding varied between 25% and 66%. Two or more different serotypes were isolated from nine snakes over time; however, a predominant serotype was generally isolated from each of these snakes. Altogether 15 different serotypes were identified. Serotypes of public health concern included Newport, Oranienburg, and Muenchen. Two samples from feeder rodents were positive for Salmonella. The results are consistent with previous studies showing high intestinal colonization rates with Salmonella sp. in snakes. Frequent and intermittent shedding of multiple serotypes was evident. Feeder rodents might serve as a source for intestinal colonization. Appropriate handling protocols should be implemented for all reptiles associated with public outreach programs to minimize risk of Salmonella transmission to the public.
C1 [Goupil, Brad A.; Olsen, Karen E.; Wuenschmann, Arno] Univ Minnesota, Coll Vet Med, Vet Diagnost Lab, St Paul, MN 55108 USA.
[Morningstar, Brenda R.] USDA, Natl Vet Serv Labs, Ames, IA 50010 USA.
RP Wunschmann, A (reprint author), Univ Minnesota, Coll Vet Med, Vet Diagnost Lab, 1333 Gortner Ave, St Paul, MN 55108 USA.
EM wunsc001@umn.edu
NR 26
TC 4
Z9 4
U1 1
U2 27
PU AMER ASSOC ZOO VETERINARIANS
PI YULEE
PA 581705 WHITE OAK ROAD, YULEE, FL 32097 USA
SN 1042-7260
J9 J ZOO WILDLIFE MED
JI J. Zoo Wildl. Med.
PD DEC
PY 2012
VL 43
IS 4
BP 836
EP 841
PG 6
WC Veterinary Sciences
SC Veterinary Sciences
GA 059AJ
UT WOS:000312676500018
PM 23272351
ER
PT J
AU Kagan, IA
Flythe, MD
AF Kagan, Isabelle A.
Flythe, Michael D.
TI Factors Affecting the Separation and Bioactivity of Red Clover
(Trifolium pratense) Extracts Assayed against Clostridium sticklandii, a
Ruminal Hyper Ammonia-producing Bacterium
SO NATURAL PRODUCT COMMUNICATIONS
LA English
DT Article
DE Trifolium pratense; Phenolic; Isoflavonoid; Thin-layer chromatography;
HAB
ID ISOFLAVONES; QUANTIFICATION; INHIBITORS; LEAVES; ACIDS; SHEEP
AB Red clover (Trifolium pratense) is rich in phenolic compounds. Both the crude phenolic extract and biochanin A, an isoflavonoid component of the extract, suppress growth of Clostridium sticklandii, a bovine, Gram-positive, ruminal hyper-ammonia producing bacterium (HAB). The purpose of this study was to determine if other components of red clover extract contributed to its anti-HAB activity. Extracts of the Kenland cultivar of red clover, collected 0 h and 24 h after cutting, were separated by normal-phase thin-layer chromatography (TLC) in either ethyl acetate-hexanes (9:1, v/v) or ethyl acetate-methanol (4:1, v/v). Bands on TLC plates were assayed by either overlaying the plates with agar seeded with C. sticklandii, or setting the excised bands face-down onto plates of bacteria-seeded agar. Biochanin A inhibited C. sticklandii growth on TLC plates when as little as 8 nmol was present in the extract. An antimicrobial band, seen in a previous bioassay, was not found, suggesting that this second compound may be more labile than biochanin A.
C1 [Kagan, Isabelle A.; Flythe, Michael D.] ARS, USDA, Forage Anim Prod Res Unit, Lexington, KY 40546 USA.
[Kagan, Isabelle A.] Univ Kentucky, Dept Plant & Soil Sci, Lexington, KY 40546 USA.
[Flythe, Michael D.] Univ Kentucky, Dept Anim & Food Sci, Lexington, KY 40546 USA.
RP Kagan, IA (reprint author), ARS, USDA, Forage Anim Prod Res Unit, Lexington, KY 40546 USA.
EM isabelle.kagan@ars.usda.gov
RI Flythe, Michael/F-2500-2010
OI Flythe, Michael/0000-0002-8868-9169
FU U.S. Department of Agriculture
FX We thank the late Dr Norman L. Taylor (Department of Plant and Soil
Sciences, University of Kentucky) for access to his field plots of
Kenland red clover, and for many helpful discussions. This study was
funded by the U.S. Department of Agriculture.
NR 19
TC 5
Z9 5
U1 0
U2 2
PU NATURAL PRODUCTS INC
PI WESTERVILLE
PA 7963 ANDERSON PARK LN, WESTERVILLE, OH 43081 USA
SN 1934-578X
J9 NAT PROD COMMUN
JI Nat. Prod. Commun.
PD DEC
PY 2012
VL 7
IS 12
BP 1605
EP 1608
PG 4
WC Chemistry, Medicinal; Food Science & Technology
SC Pharmacology & Pharmacy; Food Science & Technology
GA 062NG
UT WOS:000312925900017
PM 23413564
ER
PT J
AU Ingwell, LL
Miller-Pierce, M
Trotter, RT
Preisser, EL
AF Ingwell, Laura L.
Miller-Pierce, Mailea
Trotter, R. Talbot, III
Preisser, Evan L.
TI Vegetation and Invertebrate Community Response to Eastern Hemlock
Decline in Southern New England
SO NORTHEASTERN NATURALIST
LA English
DT Article
ID ADELGID ADELGES-TSUGAE; RANGE EXPANSION; NORTH-AMERICA; FORESTS;
POPULATION; SCALE; CONSEQUENCES; CANADENSIS; ASSEMBLAGES; DYNAMICS
AB The introduction of Adelges tsugae (Hemlock Woolly Adelgid [HWA]) to the eastern United States has had a devastating impact on Tsuga canadensis (Eastern Hemlock). Although much research has been done to assess HWA impacts on ecosystem processes and vegetation structure, few researchers have examined community-level changes in highly infested forest stands. Here we assess the impact of Eastern Hemlock mortality on vegetation and invertebrate diversity and community structure by comparing low-impact (healthy) stands and stands heavily impacted by HWA. We sampled the vegetative and invertebrate diversity of 8 sites (4 low impact and 4 high impact) in the summer and fall of 2008. We found a shift in the understory plant community and the canopy and subcanopy arthropod communities. Herbaceous plant species richness was significantly higher at high-impact sites, with Betula lenta (Black Birch) being the most common woody species. Overall, forest invertebrate community diversity (measured using the Shannon-Weaver diversity index) was greater in high- versus low-impact sites. Of the 21 indicator species significantly associated with a given forest type, 14 and 7 species were associated with high- and low-impact forests, respectively. Variation in arthropod community structure was driven by above-ground differences; ground-level arthropod community composition did not differ between high- and low-impact sites. These results demonstrate some of the biodiversity impacts that can result from the invasion of an exotic insect into forested systems.
C1 [Ingwell, Laura L.; Miller-Pierce, Mailea; Preisser, Evan L.] Univ Rhode Isl, Dept Biol Sci, Kingston, RI 02881 USA.
[Ingwell, Laura L.] Univ Idaho, Dept Entomol, Moscow, ID 83844 USA.
[Miller-Pierce, Mailea] Washington State Univ, Sch Biol Sci, Vancouver, WA 98686 USA.
[Trotter, R. Talbot, III] US Forest Serv, USDA, NE Res Stn, Hamden, CT 06514 USA.
[Trotter, R. Talbot, III] Yale Univ, Sch Forestry & Environm Studies, New Haven, CT 06511 USA.
RP Ingwell, LL (reprint author), Univ Rhode Isl, Dept Biol Sci, Kingston, RI 02881 USA.
EM laura.in-gwell@gmail.com
RI Preisser, Evan/C-3469-2013
OI Preisser, Evan/0000-0002-8737-5619
FU URI Graduate Research Grant; Sigma Xi; AES Hatch grant; NSF DEB
[0715504]
FX This research would not have been possible without the help of J.
Backer, D. Cox, K. Steinmann, J. Turner, and J. VanSant. S. Alm, R.
Casagrande, C. Hart, and A. Weed assisted with identifications, as did
the following taxonomists at the SEL USDA laboratory: D. Creel, D.
Gaimari, W. Grogan, T. Henry, R. Kula, D. Miller, and A. Norrbom.
Comments by the editor and two anonymous reviewers improved the clarity
of the manuscript. Funding for this work was provided by a Sigma Xi
Grant-in-Aid-of-Research and a URI Graduate Research Grant to LI.
Additional funding was provided by an AES Hatch grant and NSF DEB#
0715504 to EP.
NR 37
TC 2
Z9 2
U1 5
U2 72
PU HUMBOLDT FIELD RESEARCH INST
PI STEUBEN
PA PO BOX 9, STEUBEN, ME 04680-0009 USA
SN 1092-6194
J9 NORTHEAST NAT
JI Northeast. Nat
PD DEC
PY 2012
VL 19
IS 4
BP 541
EP 558
DI 10.1656/045.019.0402
PG 18
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA 063HF
UT WOS:000312986100002
ER
PT J
AU Brooks, RT
Colburn, EA
AF Brooks, Robert T.
Colburn, Elizabeth A.
TI "Island" Attributes and Benthic Macroinvertebrates of Seasonal Forest
Pools
SO NORTHEASTERN NATURALIST
LA English
DT Article
ID FRESH-WATER POOLS; SPECIES RICHNESS; TEMPORARY POOLS; COMMUNITY
STRUCTURE; VERNAL POOLS; CRUSTACEAN ASSEMBLAGES; EQUILIBRIUM-THEORY;
SPATIAL-PATTERNS; HABITAT DURATION; PONDS
AB Seasonal forest pools (SFPs), also known as woodland vernal pools or simply vernal pools, are common throughout the forests of the northeastern United States. SFPs are inundated during all or part of the period between late fall of one year and late spring to mid-summer of the subsequent year. The pools dry every year or at sufficient frequency to preclude the establishment of fish populations, are preferred breeding habitat for a number of amphibian species, and support a rich, diverse, and abundant macroinvertebrate community. These pools exist as aquatic "islands" in a "sea" of forest, and occur over a range of sizes, degrees of isolation, and hydroperiod lengths. As islands, pool area and isolation should affect the composition of biotic communities. The hydroperiod of ephemeral wetlands has been considered a third "island" attribute and is also known to affect biotic composition. We surveyed aquatic, benthic macroinvertebrates (BMIs) for two years using leaf-packs in 24 SFPs, representing a broad range of surface areas, inter-pool distances (isolation), and hydroperiods. Nearly 35,000 specimens of 76 taxa were enumerated from 198 leaf-pack samples. Chironomidae and Oligochaeta were the most abundant and most common taxa. BMI richness and diversity were positively, but weakly, related to maximum pool surface area, but not to pool isolation. The same results were found for permanent resident and predator taxa. BMI richness and diversity were positively related with pool hydroperiod, as reported from numerous other studies of ephemeral aquatic habitats.
C1 [Brooks, Robert T.] Univ Massachusetts, US Forest Serv, No Res Stn, Amherst, MA 01003 USA.
[Colburn, Elizabeth A.] Harvard Forest, Petersham, MA 01366 USA.
RP Brooks, RT (reprint author), Univ Massachusetts, US Forest Serv, No Res Stn, Amherst, MA 01003 USA.
EM rtbrooks@fs.fed.us
NR 84
TC 1
Z9 1
U1 5
U2 61
PU HUMBOLDT FIELD RESEARCH INST
PI STEUBEN
PA PO BOX 9, STEUBEN, ME 04680-0009 USA
SN 1092-6194
J9 NORTHEAST NAT
JI Northeast. Nat
PD DEC
PY 2012
VL 19
IS 4
BP 559
EP 578
DI 10.1656/045.019.0403
PG 20
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA 063HF
UT WOS:000312986100003
ER
PT J
AU Moore, GE
Burdick, DM
Peter, CR
Keirstead, DR
AF Moore, Gregg E.
Burdick, David M.
Peter, Christopher R.
Keirstead, Donald R.
TI Belowground Biomass of Phragmites australis in Coastal Marshes
SO NORTHEASTERN NATURALIST
LA English
DT Article
ID LOWER CONNECTICUT RIVER; COMMON REED; SALT-MARSH; NEW-JERSEY;
SPARTINA-ALTERNIFLORA; COMMUNIS TRIN; TIDAL MARSH; BELOWGROUND BIOMASS;
CRYPTIC INVASION; NORTH-AMERICA
AB The distribution of belowground biomass within monotypic stands of invasive Phragmites australis (Common Reed) was documented from a series of oligo-, meso-, biomass was documented growing to a maximum depth of 95 cm for roots and 85 cm for rhizomes. Our data show that invasive P. australis utilizes a greater depth range than native graminoids (90% within the top 70 cm and top 20 cm, respectively). We corroborate prior anecdotal observations and provide further evidence illustrating the potential for this invasive plant to access resources (i.e., water and nutrients) at depths greater than the native species with which it competes.
C1 [Moore, Gregg E.; Burdick, David M.; Peter, Christopher R.] Univ New Hampshire, Jackson Estuarine Lab, Durham, NH 03824 USA.
[Moore, Gregg E.] Univ New Hampshire, Dept Biol Sci, Durham, NH 03824 USA.
[Burdick, David M.] Univ New Hampshire, Dept Nat Resources & Environm, Durham, NH 03824 USA.
[Keirstead, Donald R.] Agr Nat Resources Conservat Serv, USDA, Durham, NH 03824 USA.
RP Moore, GE (reprint author), Univ New Hampshire, Jackson Estuarine Lab, 85 Adams Point Rd, Durham, NH 03824 USA.
EM gregg.moore@unh.edu
FU United States Department of Agriculture Natural Resources Conservation
Service [721428-6A380]; New Hampshire Fish and Game Department
FX We gratefully acknowledge assistance from University of New Hampshire
students, including Lauren Thorpe, Quincy Blanchard, Alyson Eberhardt
and Kirsten Nelson, for their participation in labor-intensive field and
laboratory tasks and production of GIS-based maps. We thank David Shay
of Jackson Estuarine Laboratory for assistance in collection and storage
of soil samples. We also thank Howard Ginsberg (USGS Patuxent Wildlife
Research Center) and two anonymous reviewers for their helpful
suggestions to improve the manuscript. This work was funded in part by
the United States Department of Agriculture Natural Resources
Conservation Service (Federal Award # 721428-6A380) and the New
Hampshire Fish and Game Department. This paper is Contribution Number #
503 from the Jackson Estuarine Laboratory and Center for Marine Biology
at the University of New Hampshire.
NR 62
TC 9
Z9 11
U1 1
U2 36
PU HUMBOLDT FIELD RESEARCH INST
PI STEUBEN
PA PO BOX 9, STEUBEN, ME 04680-0009 USA
SN 1092-6194
J9 NORTHEAST NAT
JI Northeast. Nat
PD DEC
PY 2012
VL 19
IS 4
BP 611
EP 626
PG 16
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA 063HF
UT WOS:000312986100006
ER
PT J
AU Teasdale, JR
Rice, CP
Cai, GM
Mangum, RW
AF Teasdale, John R.
Rice, Clifford P.
Cai, Guimei
Mangum, Ruth W.
TI Expression of allelopathy in the soil environment: soil concentration
and activity of benzoxazinoid compounds released by rye cover crop
residue
SO PLANT ECOLOGY
LA English
DT Article
DE BOA; MBOA; Secale cereale; Lactuca sativa; Amaranthus hybridus
ID SECALE-CEREALE L.; DEGRADATION-PRODUCTS; ALLELOCHEMICALS; GROWTH;
PHYTOTOXICITY; MANAGEMENT; CULTIVAR; ANALOGS; DIBOA; SAR
AB Rye (Secale cereale L.) residue is known to suppress weeds in agronomic environments and to produce benzoxazinoid (BX) compounds which are phytotoxic. Experiments were conducted to determine the duration of indicator plant inhibition and BX soil concentrations in response to field incorporated or surface rye residue. Surface rye residue was highly inhibitory to lettuce (Lactuca sativa L.) and smooth pigweed (Amaranthus hybridus L.) throughout an experimental period of 4 weeks, whereas soil removed from beneath residue and assayed in pots had little phytotoxicity, suggesting that physical rather than chemical mechanisms were involved. Incorporated residue inhibited lettuce and pigweed for approximately 2 weeks after incorporation, which corresponded to the period when elevated BX levels were detected in soil, suggesting potential allelopathy. The most toxic BX compounds, APO, DIBOA, and DIMBOA, were present at relatively low levels, whereas the less toxic compounds, BOA and MBOA, and the non-toxic compounds, HBOA and HMBOA, were the predominant BX species in amended soils. When the benzoxazolinones BOA and MBOA were exogenously added to soils to maintain extractable levels of up to 10 mu g g(-1) soil (100-500 times higher than measured BX in field soils), no significant inhibition of pigweed plants was observed. This result indicated that the observed association between the duration of plant inhibition and BX from incorporated rye was not causal, and that other compounds released with similar dynamics were likely responsible. This approach provides a sound basis for demonstrating the presence of allelopathy in natural or managed ecosystems.
C1 [Teasdale, John R.; Rice, Clifford P.; Cai, Guimei; Mangum, Ruth W.] ARS, USDA, Sustainable Agr Syst Lab, Beltsville, MD 20705 USA.
RP Teasdale, JR (reprint author), ARS, USDA, Sustainable Agr Syst Lab, Bldg 001,Room 245, Beltsville, MD 20705 USA.
EM john.teasdale@ars.usda.gov
NR 26
TC 15
Z9 17
U1 5
U2 93
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 1385-0237
J9 PLANT ECOL
JI Plant Ecol.
PD DEC
PY 2012
VL 213
IS 12
SI SI
BP 1893
EP 1905
DI 10.1007/s11258-012-0057-x
PG 13
WC Plant Sciences; Ecology; Forestry
SC Plant Sciences; Environmental Sciences & Ecology; Forestry
GA 063VX
UT WOS:000313031200005
ER
PT J
AU Ohm, RA
Feau, N
Henrissat, B
Schoch, CL
Horwitz, BA
Barry, KW
Condon, BJ
Copeland, AC
Dhillon, B
Glaser, F
Hesse, CN
Kosti, I
LaButti, K
Lindquist, EA
Lucas, S
Salamov, AA
Bradshaw, RE
Ciuffetti, L
Hamelin, RC
Kema, GHJ
Lawrence, C
Scott, JA
Spatafora, JW
Turgeon, BG
de Wit, PJGM
Zhong, SB
Goodwin, SB
Grigoriev, IV
AF Ohm, Robin A.
Feau, Nicolas
Henrissat, Bernard
Schoch, Conrad L.
Horwitz, Benjamin A.
Barry, Kerrie W.
Condon, Bradford J.
Copeland, Alex C.
Dhillon, Braham
Glaser, Fabian
Hesse, Cedar N.
Kosti, Idit
LaButti, Kurt
Lindquist, Erika A.
Lucas, Susan
Salamov, Asaf A.
Bradshaw, Rosie E.
Ciuffetti, Lynda
Hamelin, Richard C.
Kema, Gert H. J.
Lawrence, Christopher
Scott, James A.
Spatafora, Joseph W.
Turgeon, B. Gillian
de Wit, Pierre J. G. M.
Zhong, Shaobin
Goodwin, Stephen B.
Grigoriev, Igor V.
TI Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the
Genomes of Eighteen Dothideomycetes Fungi
SO PLOS PATHOGENS
LA English
DT Article
ID ASCOMYCETE LEPTOSPHAERIA-MACULANS; NONRIBOSOMAL PEPTIDE SYNTHETASES;
INDUCED POINT MUTATIONS; POLYKETIDE SYNTHASE;
COCHLIOBOLUS-HETEROSTROPHUS; COLLETOTRICHUM-GRAMINICOLA;
FUSARIUM-GRAMINEARUM; STAGONOSPORA-NODORUM; PHYLOGENETIC TREES;
NEUROSPORA-CRASSA
AB The class Dothideomycetes is one of the largest groups of fungi with a high level of ecological diversity including many plant pathogens infecting a broad range of hosts. Here, we compare genome features of 18 members of this class, including 6 necrotrophs, 9 (hemi)biotrophs and 3 saprotrophs, to analyze genome structure, evolution, and the diverse strategies of pathogenesis. The Dothideomycetes most likely evolved from a common ancestor more than 280 million years ago. The 18 genome sequences differ dramatically in size due to variation in repetitive content, but show much less variation in number of (core) genes. Gene order appears to have been rearranged mostly within chromosomal boundaries by multiple inversions, in extant genomes frequently demarcated by adjacent simple repeats. Several Dothideomycetes contain one or more gene-poor, transposable element (TE)-rich putatively dispensable chromosomes of unknown function. The 18 Dothideomycetes offer an extensive catalogue of genes involved in cellulose degradation, proteolysis, secondary metabolism, and cysteine-rich small secreted proteins. Ancestors of the two major orders of plant pathogens in the Dothideomycetes, the Capnodiales and Pleosporales, may have had different modes of pathogenesis, with the former having fewer of these genes than the latter. Many of these genes are enriched in proximity to transposable elements, suggesting faster evolution because of the effects of repeat induced point (RIP) mutations. A syntenic block of genes, including oxidoreductases, is conserved in most Dothideomycetes and upregulated during infection in L. maculans, suggesting a possible function in response to oxidative stress.
C1 [Ohm, Robin A.; Barry, Kerrie W.; Copeland, Alex C.; LaButti, Kurt; Lindquist, Erika A.; Lucas, Susan; Salamov, Asaf A.; Grigoriev, Igor V.] US DOE, JGI, Walnut Creek, CA 94598 USA.
[Feau, Nicolas; Dhillon, Braham; Hamelin, Richard C.] Univ British Columbia, Fac Forestry, Forest Sci Ctr, Vancouver, BC V6T 1W5, Canada.
[Henrissat, Bernard] Aix Marseille Univ, CNRS, Marseille, France.
[Schoch, Conrad L.] NIH NLM NCBI, Bethesda, MD USA.
[Horwitz, Benjamin A.; Kosti, Idit] Technion Israel Inst Technol, Dept Biol, IL-32000 Haifa, Israel.
[Condon, Bradford J.; Turgeon, B. Gillian] Cornell Univ, Dept Plant Pathol & Plant Microbe Biol, Ithaca, NY USA.
[Glaser, Fabian] Technion Israel Inst Technol, Bioinformat Knowledge Unit, Haifa, Israel.
[Hesse, Cedar N.; Ciuffetti, Lynda; Spatafora, Joseph W.] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA.
[Bradshaw, Rosie E.] Massey Univ, Inst Mol BioSci, Palmerston North, New Zealand.
[Hamelin, Richard C.] Nat Resources Canada, Ste Foy, PQ, Canada.
[Kema, Gert H. J.] Plant Res Int, Wageningen, Netherlands.
[Lawrence, Christopher] Virginia Bioinformat Inst, Blacksburg, VA USA.
[Lawrence, Christopher] Dept Biol Sci, Blacksburg, VA USA.
[Scott, James A.] Univ Toronto, Dalla Lana Sch Publ Hlth, Div Occupat & Environm Hlth, Toronto, ON, Canada.
[de Wit, Pierre J. G. M.] Wageningen Univ, Phytopathol Lab, Wageningen, Netherlands.
[Zhong, Shaobin] N Dakota State Univ, Dept Plant Pathol, Fargo, ND 58105 USA.
[Goodwin, Stephen B.] Purdue Univ, USDA, ARS, W Lafayette, IN 47907 USA.
RP Ohm, RA (reprint author), US DOE, JGI, Walnut Creek, CA 94598 USA.
EM raohm@lbl.gov; ivgrigoriev@lbl.gov
RI Scott, James/A-8598-2011; de Wit, Pierre/A-1998-2013; Bradshaw,
Rosie/C-7846-2011; Ohm, Robin/I-6689-2016;
OI Scott, James/0000-0002-5073-0832; de Wit, Pierre/0000-0002-4208-288X;
Bradshaw, Rosie/0000-0001-5228-2685; Goodwin,
Stephen/0000-0001-5708-9729
FU Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231];
USDA-ARS CRIS project [3602-22000-015-00D]; Intramural Research Program
of the NIH, National Library of Medicine
FX The work done by U.S. Department of Energy Joint Genome Institute is
supported by the Office of Science of the U.S. Department of Energy
under contract number DE-AC02-05CH11231. This work was supported in part
by USDA-ARS CRIS project 3602-22000-015-00D. CLS acknowledges support
from the Intramural Research Program of the NIH, National Library of
Medicine. The funders had no role in study design, data collection and
analysis, decision to publish, or preparation of the manuscript.
NR 135
TC 139
Z9 153
U1 6
U2 114
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA
SN 1553-7374
J9 PLOS PATHOG
JI PLoS Pathog.
PD DEC
PY 2012
VL 8
IS 12
AR e1003037
DI 10.1371/journal.ppat.1003037
PG 26
WC Microbiology; Parasitology; Virology
SC Microbiology; Parasitology; Virology
GA 062GJ
UT WOS:000312907100009
PM 23236275
ER
PT J
AU Lizotte, RE
Shields, FD
Knight, SS
Cooper, CM
Testa, S
Bryant, CT
AF Lizotte, R. E., Jr.
Shields, F. D., Jr.
Knight, S. S.
Cooper, C. M.
Testa, S., III
Bryant, C. T.
TI EFFECTS OF ARTIFICIAL FLOODING ON WATER QUALITY OF A FLOODPLAIN
BACKWATER
SO RIVER RESEARCH AND APPLICATIONS
LA English
DT Article
DE flow augmentation; riverine floodplain; water chemistry; chlorophyll
ID FISH ASSEMBLAGES; RIVER; LAKES; RESTORATION; DISTRIBUTIONS;
CONNECTIVITY; MANAGEMENT; NUTRIENTS; HABITATS; EUROPE
AB Seasonal flooding of riverine backwaters is important in maintaining diverse aquatic habitats, but anthropogenic impacts have reduced the frequency and duration of such flooding. This study, conducted in a 2.5-km-long shallow floodplain severed meander backwater adjacent to the Coldwater River in Tunica County, Mississippi, USA, compared water quality during a late summer 30-day artificial flooding period with 28-day pre-flood and 26-day post-flood periods. Flooding was simulated by pumping 0.22 to 0.35?m3?s-1 from the river into the upstream portion of the backwater. In situ parameters (temperature, pH, dissolved oxygen, conductivity and fluorescent chlorophyll) were measured every 30?min at one site within the backwater. Solids (dissolved and suspended) and nutrients (phosphorus and nitrogen) were measured at three sites in the backwater and in the river every 3 to 5?days. Decreases in the amplitude of temperature, dissolved oxygen and pH diel cycles within the backwater were observed during flooding. Changes in patterns of solids and nutrients were also associated with flooding. Complex patterns in phosphorus and nitrogen emerged as a result of utilization by autotrophs (measured as chlorophyll) and seasonal changes. Artificial flooding in a shallow floodplain water body stabilized and improved water quality for aquatic biota and is a viable method for habitat rehabilitation in these systems. Copyright (c) 2011 John Wiley & Sons, Ltd.
C1 [Lizotte, R. E., Jr.; Shields, F. D., Jr.; Knight, S. S.; Cooper, C. M.; Testa, S., III; Bryant, C. T.] ARS, USDA, Natl Sedimentat Lab, Oxford, MS 38655 USA.
RP Lizotte, RE (reprint author), ARS, USDA, Natl Sedimentat Lab, POB 1157, Oxford, MS 38655 USA.
EM richard.lizotte@ars.usda.gov
NR 45
TC 2
Z9 2
U1 2
U2 39
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1535-1459
J9 RIVER RES APPL
JI River Res. Appl.
PD DEC
PY 2012
VL 28
IS 10
BP 1644
EP 1657
DI 10.1002/rra.1553
PG 14
WC Environmental Sciences; Water Resources
SC Environmental Sciences & Ecology; Water Resources
GA 058RI
UT WOS:000312651000005
ER
PT J
AU Keyser, TL
Roof, T
Adams, JL
Simon, D
Warburton, G
AF Keyser, Tara L.
Roof, Tracy
Adams, Jacquelyne L.
Simon, Dean
Warburton, Gordon
TI Effects of Prescribed Fire on the Buried Seed Bank in Mixed-Hardwood
Forests of the Southern Appalachian Mountains
SO SOUTHEASTERN NATURALIST
LA English
DT Article
ID TEMPERATE DECIDUOUS FOREST; LAND-USE HISTORY; OAK FORESTS; OLD-GROWTH;
TOPOGRAPHIC POSITION; SHORT-TERM; SOIL; VEGETATION; SUCCESSION; DYNAMICS
AB This study characterizes the seed bank prior to and immediately following dormant-season prescribed fire in mature, mixed-Quercus spp. (oak) forests in the southern Appalachian Mountains. Thirty samples from the litter/duff (LD) and the top 5 cm of the mineral soil (MS) were collected from five 5-ha burn units (6 plots per experimental unit) before and immediately after low-intensity prescribed fires, where maximum fire temperatures varied from <79 to 316 degrees C. A split-plot ANOVA and multi-response permutation procedures (MRBP) were utilized to assess the effects of burn treatment (pre- or post-fire) and seed bank layer (LD and MS) on the diversity and density of the buried seed bank. An average of 471 emergents/m(2) was observed in the buried seed bank comprising 133 identifiable taxa. No differences in total seed-bank density, Shannon-Weiner's diversity index (H'), or overall species composition between pre- and post-fire sampling or between the LD and MS layers were observed. Species richness (S) of the seed bank, however, was slightly greater pre-fire than post-fire, regardless of layer. Similarity, as defined by Sorenson's index, of species common to the seed bank and aboveground forest understory was low, with a slight increase in Sorenson's index observed during post-fire sampling of the seed bank and aboveground vegetation. Although we observed only negligible effects of a once-applied, low-intensity prescribed fire on the buried seed bank, the effects of a low-intensity prescribed fire management regime-one that involves repeated low intensity burns-on the buried seed bank are unknown and should be a focus of future studies across mixed-oak forests in the eastern US.
C1 [Keyser, Tara L.; Roof, Tracy; Adams, Jacquelyne L.] USDA, Forest Serv, So Res Stn, Asheville, NC 28806 USA.
[Simon, Dean] N Carolina Wildlife Resources Commiss, Lawndale, NC 28090 USA.
[Warburton, Gordon] N Carolina Wildlife Resources Commiss, Marion, NC 28752 USA.
RP Keyser, TL (reprint author), USDA, Forest Serv, So Res Stn, 1577 Brevard Rd, Asheville, NC 28806 USA.
EM tkeyser@fs.fed.us
NR 66
TC 6
Z9 6
U1 4
U2 48
PU HUMBOLDT FIELD RESEARCH INST
PI STEUBEN
PA PO BOX 9, STEUBEN, ME 04680-0009 USA
SN 1528-7092
J9 SOUTHEAST NAT
JI Southeast. Nat.
PD DEC
PY 2012
VL 11
IS 4
BP 669
EP 688
DI 10.1656/058.011.0407
PG 20
WC Biodiversity Conservation; Ecology
SC Biodiversity & Conservation; Environmental Sciences & Ecology
GA 063HD
UT WOS:000312985900007
ER
PT J
AU Gould, PJ
Harrington, CA
St Clair, JB
AF Gould, Peter J.
Harrington, Constance A.
St Clair, J. Bradley
TI Growth phenology of coast Douglas-fir seed sources planted in diverse
environments
SO TREE PHYSIOLOGY
LA English
DT Article
DE Adaptation; assisted migration; budburst; cambium; dormancy; genecology
ID X POPULUS-GRANDIDENTATA; CAMBIAL REACTIVATION; GENETIC-VARIATION;
CLIMATE-CHANGE; PSEUDOTSUGA-MENZIESII; FLUSHING TEMPERATURE; WOOD
FORMATION; LOBLOLLY-PINE; BUD-BURST; RESPONSES
AB The timing of periodic life cycle events in plants (phenology) is an important factor determining how species and populations will react to climate change. We evaluated annual patterns of basal-area and height growth of coast Douglas-fir (Pseudotusga menziesii var. menziesii (Mirb.) Franco) seedlings from four seed sources that were planted in four diverse environments as part of the Douglas-fir Seed-Source Movement Trial. Stem diameters and heights were measured periodically during the 2010 growing season on 16 open-pollinated families at each study installation. Stem diameters were measured on a subset of trees with electronic dendrometers during the 2010 and 2011 growing seasons. Trees from the four seed sources differed in phenology metrics that described the timing of basal-area and height-growth initiation, growth cessation and growth rates. Differences in the height-growth metrics were generally larger than differences in the basal-area growth metrics and differences among installations were larger than differences among seed sources, highlighting the importance of environmental signals on growth phenology. Variations in the height- and basal-area growth metrics were correlated with different aspects of the seed-source environments: precipitation in the case of height growth and minimum temperature in the case of basal-area growth. The detailed dendrometer measurements revealed differences in growth patterns between seed sources during distinct periods in the growing season. Our results indicate that multiple aspects of growth phenology should be considered along with other traits when evaluating adaptation of populations to future climates.
C1 [Gould, Peter J.; Harrington, Constance A.] Pacific NW Res Stn, Olympia, WA 98512 USA.
[St Clair, J. Bradley] US Forest Serv, Pacific NW Res Stn, Corvallis, OR 97331 USA.
RP Gould, PJ (reprint author), Pacific NW Res Stn, 3625 93rd Ave SW, Olympia, WA 98512 USA.
EM pgould@fs.fed.us
FU USDI Bureau of Land Management; USDA Forest Service, Pacific Northwest
Research Station
FX Funding was provided by the USDI Bureau of Land Management and the USDA
Forest Service, Pacific Northwest Research Station.
NR 63
TC 5
Z9 5
U1 1
U2 58
PU OXFORD UNIV PRESS
PI OXFORD
PA GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
SN 0829-318X
J9 TREE PHYSIOL
JI Tree Physiol.
PD DEC
PY 2012
VL 32
IS 12
BP 1482
EP 1496
DI 10.1093/treephys/tps106
PG 15
WC Forestry
SC Forestry
GA 058NN
UT WOS:000312640900006
PM 23135739
ER
PT J
AU Erickson, MJ
Colle, BA
Charney, JJ
AF Erickson, Michael J.
Colle, Brian A.
Charney, Joseph J.
TI Impact of Bias-Correction Type and Conditional Training on Bayesian
Model Averaging over the Northeast United States
SO WEATHER AND FORECASTING
LA English
DT Article
ID QUANTITATIVE PRECIPITATION FORECASTS; SURFACE-TEMPERATURE FORECASTS;
RANGE ENSEMBLE FORECASTS; STATISTICS UMOS SYSTEM; BOUNDARY-LAYER; FIRE
WEATHER; OUTPUT STATISTICS; WRF MODEL; MESOSCALE METEOROLOGY; SYNOPTIC
CLIMATOLOGY
AB The performance of a multimodel ensemble over the northeast United States is evaluated before and after applying bias correction and Bayesian model averaging (BMA). The 13-member Stony Brook University (SBU) ensemble at 0000 UTC is combined with the 21-member National Centers for Environmental Prediction (NCEP) Short-Range Ensemble Forecast (SREF) system at 2100 UTC. The ensemble is verified using 2-m temperature and 10-m wind speed for the 2007-09 warm seasons, and for subsets of days with high ozone and high fire threat. The impacts of training period, bias-correction method, and BMA are explored for these potentially hazardous weather events using the most recent consecutive (sequential training) and most recent similar days (conditional training). BMA sensitivity to the selection of ensemble members is explored. A running mean difference between forecasts and observations using the last 14 days is better at removing temperature bias than is a cumulative distribution function (CDF) or linear regression approach. Wind speed bias is better removed by adjusting the modeled CDF to the observation. High fire threat and ozone days exhibit a larger cool bias and a greater negative wind speed bias than the warm-season average. Conditional bias correction is generally better at removing temperature and wind speed biases than sequential training. Greater probabilistic skill is found for temperature using both conditional bias correction and BMA compared to sequential bias correction with or without BMA. Conditional and sequential BMA results are similar for 10-m wind speed, although BMA typically improves probabilistic skill regardless of training.
C1 [Erickson, Michael J.; Colle, Brian A.] SUNY Stony Brook, Sch Marine & Atmospher Sci, Stony Brook, NY 11794 USA.
[Charney, Joseph J.] US Forest Serv, No Res Stn, USDA, E Lansing, MI USA.
RP Erickson, MJ (reprint author), SUNY Stony Brook, Sch Marine & Atmospher Sci, Stony Brook, NY 11794 USA.
EM mjaerickson@gmail.com
FU Stony Brook University [08-JV-11242306-093]; U.S. Forest Service
[08-JV-11242306-093]; New York State Energy Research and Development
Authority [10599]
FX This work was supported by a research joint venture agreement between
Stony Brook University and the U.S. Forest Service (08-JV-11242306-093)
and the New York State Energy Research and Development Authority
(Agreement 10599). We appreciate Christian Hogrefe's suggestions to
improve this manuscript, Prakash Draiswamy for a list of high ozone days
over the northeast United States, Jasper Vrugt for providing his BMA
code, Jun Du for his help with the SREF system, and Larry Bradshaw for
his help with the WFAS data.
NR 83
TC 2
Z9 2
U1 0
U2 9
PU AMER METEOROLOGICAL SOC
PI BOSTON
PA 45 BEACON ST, BOSTON, MA 02108-3693 USA
SN 0882-8156
EI 1520-0434
J9 WEATHER FORECAST
JI Weather Forecast.
PD DEC
PY 2012
VL 27
IS 6
BP 1449
EP 1469
DI 10.1175/WAF-D-11-00149.1
PG 21
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA 063TH
UT WOS:000313023900008
ER
PT J
AU Ravi, S
Li, JR
Zobeck, TM
AF Ravi, Sujith
Li, Junran
Zobeck, Ted M.
TI Aeolian processes: Biophysical drivers and biogeochemical implications
SO AEOLIAN RESEARCH
LA English
DT Editorial Material
C1 [Ravi, Sujith] Univ Arizona, Tucson, AZ 85721 USA.
[Li, Junran] Univ Calif Los Angeles, Dept Geog, Los Angeles, CA 90095 USA.
[Zobeck, Ted M.] USDA ARS, Wind Eros & Water Conservat Res Unit, Lubbock, TX 79415 USA.
RP Ravi, S (reprint author), Univ Arizona, UA Biosphere 2, Tucson, AZ 85721 USA.
EM sr9k@virginia.edu
RI Ravi, Sujith/C-3586-2008
OI Ravi, Sujith/0000-0002-0425-9373
NR 4
TC 0
Z9 0
U1 0
U2 10
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 1875-9637
J9 AEOLIAN RES
JI Aeolian Res.
PD DEC
PY 2012
VL 7
SI SI
BP 1
EP 1
DI 10.1016/j.aeolia.2012.06.001
PG 1
WC Geography, Physical
SC Physical Geography
GA 056FB
UT WOS:000312472700001
ER
PT J
AU Ravi, S
Baddock, MC
Zobeck, TM
Hartman, J
AF Ravi, Sujith
Baddock, Matthew C.
Zobeck, Ted M.
Hartman, Joe
TI Field evidence for differences in post-fire aeolian transport related to
vegetation type in semi-arid grasslands
SO AEOLIAN RESEARCH
LA English
DT Article
DE Wind erosion; Fire; Dust emissions; Grasslands; Land degradation;
Management
ID WIND EROSION; DOMINATED LANDSCAPES; SEDIMENT TRANSPORT; DESERT
GRASSLAND; WATER REPELLENCY; NEW-MEXICO; SOIL; WILDFIRE; DISTURBANCE;
SHRUBLAND
AB Disturbances such as wildfires, which cause a temporary reduction in vegetation cover, can greatly accelerate soil erosion by wind and promote dust emissions. Enhanced erosion leads to a reduction in soil fertility and the post-fire mobilisation of soil and associated emissions of dust represent a significant concern for ecosystem management and risk assessment. Here we investigate the temporal change of aeolian activity following a wildfire within both a managed grassland and an adjacent shrub encroached grassland at the Cimarron National Grassland, KS, USA. Our results indicate that, even though the grassland and shrub encroached grassland sites exhibit comparable aeolian activity soon after the fire, the duration of the post-disturbance period of aeolian activity (or "window of disturbance") is shorter in the case of grassland than in the case of shrub encroached grassland. The degree of post-fire aeolian transport and its attenuation with time is strongly affected by the antecedent vegetation type. These findings have implications for management of semi-arid grasslands under both changing vegetation types (shrub encroachment) and disturbance (fire) regimes. (C) 2011 Elsevier B.V. All rights reserved.
C1 [Ravi, Sujith] Univ Arizona, UA Biosphere 2, Tucson, AZ 85721 USA.
[Baddock, Matthew C.] Univ Virginia, Dept Environm Sci, Charlottesville, VA 22904 USA.
[Baddock, Matthew C.; Zobeck, Ted M.] USDA ARS, Wind Eros & Water Conservat Res Unit, Lubbock, TX 79415 USA.
[Hartman, Joe] USDA Forest Serv, Elkhart, KS 67950 USA.
RP Ravi, S (reprint author), Univ Arizona, UA Biosphere 2, Tucson, AZ 85721 USA.
EM ravi@email.arizona.edu
RI Ravi, Sujith/C-3586-2008; Baddock, Matthew/A-5739-2012
OI Ravi, Sujith/0000-0002-0425-9373; Baddock, Matthew/0000-0003-1490-7511
NR 40
TC 5
Z9 5
U1 1
U2 21
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 1875-9637
J9 AEOLIAN RES
JI Aeolian Res.
PD DEC
PY 2012
VL 7
SI SI
BP 3
EP 10
DI 10.1016/j.aeolia.2011.12.002
PG 8
WC Geography, Physical
SC Physical Geography
GA 056FB
UT WOS:000312472700002
ER
PT J
AU DeJonge, KC
Ascough, JC
Andales, AA
Hansen, NC
Garcia, LA
Arabi, M
AF DeJonge, K. C.
Ascough, J. C., II
Andales, A. A.
Hansen, N. C.
Garcia, L. A.
Arabi, M.
TI Improving evapotranspiration simulations in the CERES-Maize model under
limited irrigation
SO AGRICULTURAL WATER MANAGEMENT
LA English
DT Article
DE Crop model; Evaporation and transpiration; Deficit irrigation; Crop
coefficient; Water production functions
ID SOIL-WATER BALANCE; LEAF-AREA INDEX; DEFICIT IRRIGATION; CORN; YIELD;
MANAGEMENT; TRANSPIRATION; ENVIRONMENT; SCENARIOS; STRESS
AB Limitations on water resources for agriculture in places such as Colorado, USA, have caused farmers to consider limited irrigation as an alternative to full irrigation practices, where the crop is intentionally stressed during specific growth stages in an effort to maximize yield per unit water consumed, or evapotranspiration (ET). While crop growth models such as CERES-Maize provide the ability to evaluate numerous management scenarios without the costs associated with multiyear field experiments, recent studies have shown that CERES-Maize performs well under full irrigation but overestimates ET of corn under limited irrigation management. The primary objective of this study was to improve CERES-Maize ET simulation under limited irrigation management while maintaining accuracy of other important model output responses. Field experiments with corn were performed in northern Colorado, USA from 2006 to 2010, where four replicates each of full (ET requirement supplied by irrigation throughout the season) and limited (no irrigation before the V12 growth stage unless necessary for emergence, then full irrigation afterwards) irrigation treatments were analyzed. The local sensitivity of model input parameters affecting ET was evaluated, prompting changes to the model code with a new dynamic crop coefficient (K-CD) as a function of the crop leaf area index. The modified CERES-Maize model more accurately represented ET under full and limited irrigation, for example reducing late-season ET potential from a plant with reduced canopy and more closely matched FAO-56 crop coefficient curves under full irrigation. Using the limited irrigation data for evaluation, the modified model showed significant decreases in model error for seasonal cumulative ET (root mean square deviation RMSD from 80.9 mm to 49.9 mm) and water productivity (RMSD from 5.97 kg ha(-1) mm(-1) to 2.86 kg ha(-1) mm(-1)) as compared to the original model. The modified model was subsequently applied to several hypothetical irrigation management strategies, indicating that reducing weekly vegetative stage water applications from 20 mm to 2.5 mm can increase simulated water productivity by over 15%. While these synthetic water production functions may not be feasible in a production field with natural climate variability, the modified ET model indicates promise for limited irrigation management increasing water productivity. Published by Elsevier B.V.
C1 [DeJonge, K. C.] USDA ARS, Water Management Res Unit, Ft Collins, CO 80526 USA.
[Ascough, J. C., II] USDA ARS, Agr Syst Res Unit, Ft Collins, CO 80526 USA.
[Andales, A. A.; Hansen, N. C.] Colorado State Univ, Dept Soil & Crop Sci, Ft Collins, CO 80523 USA.
[Garcia, L. A.; Arabi, M.] Colorado State Univ, Dept Civil & Environm Engn, Ft Collins, CO 80523 USA.
RP DeJonge, KC (reprint author), USDA ARS, Water Management Res Unit, Ft Collins, CO 80526 USA.
EM Kendall.DeJonge@ars.usda.gov
RI Andales, Allan/M-8328-2013
NR 42
TC 21
Z9 27
U1 4
U2 63
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0378-3774
EI 1873-2283
J9 AGR WATER MANAGE
JI Agric. Water Manage.
PD DEC
PY 2012
VL 115
BP 92
EP 103
DI 10.1016/j.agwat.2012.08.013
PG 12
WC Agronomy; Water Resources
SC Agriculture; Water Resources
GA 056DG
UT WOS:000312468000010
ER
PT J
AU Marini, JC
Stoll, B
Didelija, IC
Burrin, DG
AF Marini, Juan C.
Stoll, Barbara
Didelija, Inka Cajo
Burrin, Douglas G.
TI De novo synthesis is the main source of ornithine for citrulline
production in neonatal pigs
SO AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM
LA English
DT Article
DE citrulline; arginine; neonate; stable isotope
ID ARGININE SYNTHESIS; GLUTAMINE PRECURSOR; PLASMA ARGININE; MOUSE
INTESTINE; NITROGEN DONOR; RAT INTESTINE; PIGLETS; METABOLISM; PROLINE;
ENZYMES
AB Marini JC, Stoll B, Didelija IC, Burrin DG. De novo synthesis is the main source of ornithine for citrulline production in neonatal pigs. Am J Physiol Endocrinol Metab 303: E1348-E1353, 2012. First published October 16, 2012; doi:10.1152/ajpendo.00399.2012.-Citrulline is an amino acid synthesized in the gut and utilized for the synthesis of the conditionally essential amino acid arginine. Recently, the origin of the ornithine utilized for citrulline synthesis has become a matter of discussion. Multiple physiological factors may have contributed to the differences found among different researchers; one of these is the developmental stage of the subjects studied. To test the hypothesis that during the neonatal period de novo synthesis is the main source of ornithine for citrulline synthesis, neonatal piglets were infused intravenously or intragastrically with [U-C-13(6)] arginine, [U-C-13(5)] glutamine, or [U-C-13(5)] proline during the fasted and fed periods. [ureido-N-15] citrulline and [H-2(2)] ornithine were infused intravenously for the entire infusion protocol. During fasting, plasma proline (13%) and ornithine (19%) were the main precursors for citrulline synthesis, whereas plasma arginine (62%) was the main precursor for plasma ornithine. During feeding, enteral (27%) and plasma (12%) proline were the main precursors for the ornithine utilized in the synthesis of citrulline, together with plasma ornithine (27%). Enteral proline and glutamine were utilized directly by the gut to produce ornithine utilized for citrulline synthesis. Arginine was not utilized by the gut, which is consistent with the lack of arginase activity in the neonate. Arginine, however, was the main source (47%) of plasma ornithine and in this way contributed to citrulline synthesis. In conclusion, during the neonatal period, the de novo pathway is the predominant source for the ornithine utilized in the synthesis of citrulline, and proline is the preferred precursor.
C1 [Marini, Juan C.; Stoll, Barbara; Didelija, Inka Cajo; Burrin, Douglas G.] ARS, USDA, Childrens Nutr Res Ctr, Dept Pediat,Baylor Coll Med, Houston, TX USA.
RP Marini, JC (reprint author), 1100 Bates St,Mail Stop BCM320, Houston, TX 77030 USA.
EM marini@bcm.edu
FU United States Department of Agriculture, Agricultural Research Service
[58-6250-6-001]; National Institutes of Research Resources [K01
RR-024173]
FX This work was supported by federal funds from the United States
Department of Agriculture, Agricultural Research Service under
Cooperative Agreement No. 58-6250-6-001 and the National Institutes of
Research Resources (K01 RR-024173).
NR 40
TC 6
Z9 6
U1 1
U2 4
PU AMER PHYSIOLOGICAL SOC
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814 USA
SN 0193-1849
J9 AM J PHYSIOL-ENDOC M
JI Am. J. Physiol.-Endocrinol. Metab.
PD DEC
PY 2012
VL 303
IS 11
BP E1348
EP E1353
DI 10.1152/ajpendo.00399.2012
PG 6
WC Endocrinology & Metabolism; Physiology
SC Endocrinology & Metabolism; Physiology
GA 051LA
UT WOS:000312126800007
PM 23074237
ER
PT J
AU Jansky, S
Hamernik, A
Chung, YS
AF Jansky, Shelley
Hamernik, Andy
Chung, Yong Suk
TI M7 Germplasm Release: A Tetraploid Clone Derived from Solanum
infundibuliforme for Use in Expanding the Germplasm Base for French Fry
Processing
SO AMERICAN JOURNAL OF POTATO RESEARCH
LA English
DT Article
DE Potato; Solanum tuberosum; Solanum infundibuliforme; French fry; Cold
induced sweetening; Soft rot; Common scab
ID UDP-GLUCOSE PYROPHOSPHORYLASE; CULTIVATED POTATO; DIPLOID POTATOES;
RESISTANCE; COLD; INHERITANCE; RUSSET; INVERTASE; QUALITY; ALLELES
AB A new source of russet germplasm has been identified as a parent for processing and fresh market breeding programs. It was derived via bilateral sexual polyploidization following a cross between a diploid cultivated potato and the diploid wild species Solanum infundibuliforme. This clone, designated M7, is tetraploid and highly fertile, based on crossability to tetraploid germplasm. It produces large tubers with long shape and russet skin. M7 offspring produce tubers with a desirable appearance and some are resistant to cold-induced sweetening. In addition, M7 is resistant to common scab and soft rot.
C1 [Jansky, Shelley; Chung, Yong Suk] Univ Wisconsin, Dept Hort, Madison, WI 53706 USA.
[Jansky, Shelley; Hamernik, Andy] Univ Wisconsin, USDA ARS, Madison, WI 53706 USA.
RP Jansky, S (reprint author), Univ Wisconsin, Dept Hort, 1575 Linden Dr, Madison, WI 53706 USA.
EM shelley.jansky@ars.usda.gov
NR 19
TC 1
Z9 1
U1 1
U2 12
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1099-209X
J9 AM J POTATO RES
JI Am. J. Potato Res.
PD DEC
PY 2012
VL 89
IS 6
BP 448
EP 452
DI 10.1007/s12230-012-9266-z
PG 5
WC Agronomy
SC Agriculture
GA 057QK
UT WOS:000312577900004
ER
PT J
AU DeFauw, SL
Larkin, RP
English, PJ
Halloran, JM
Hoshide, AK
AF DeFauw, Sherri L.
Larkin, Robert P.
English, Patrick J.
Halloran, John M.
Hoshide, Aaron K.
TI Geospatial Evaluations of Potato Production Systems in Maine
SO AMERICAN JOURNAL OF POTATO RESEARCH
LA English
DT Article
DE Geographic information systems (GIS); Potato agroecosystems; Soils;
Erodibility classification; Crop rotation; Economic analysis
ID SOIL MICROBIAL COMMUNITIES; PRINCE-EDWARD-ISLAND; CROP-ROTATION;
ATLANTIC CANADA; CONSERVATION TILLAGE; TUBER YIELD; LAND-COVER; EROSION;
QUALITY; DISEASES
AB Maine consistently ranks in the top ten potato (Solanum tuberosum L.) production areas though yields are substantially lower than the mid- and western USA. Geospatial frameworks help resolve patterns and trends in production environments (at multiple scales) that may enable improvements in adaptive management strategies which enhance yield, increase whole-farm profitability, and foster sustainable land use. Results from geospatial integration of remotely-sensed cropland (2008-2010) and soil datasets for Maine indicate an estimated 61,900 ha in potato production with 62 % and 27 % on prime farmland (PF) and farmland of statewide importance (FSI), respectively. Geospatial analyses of other agri-environmental indicators indicate close to 85 % of these potato production soils are classified as either "potentially highly erodible" (PHEL) or "highly erodible" (HEL). Therefore, at least 52,300 ha require the highest standards in soil conservation practices. Crop rotation patterns for potato, derived from the time-series geo-referenced datasets, help resolve actual cropping practices and facilitated evaluation of the benefits and economic impacts for select alternate crops.
C1 [DeFauw, Sherri L.; Larkin, Robert P.; Halloran, John M.] ARS, USDA, NAA, New England Plant Soil & Water Lab, Orono, ME 04469 USA.
[English, Patrick J.] Mississippi State Univ, Delta Res & Extens Ctr, Stoneville, MS 38776 USA.
[Hoshide, Aaron K.] Univ Maine, Sch Econ, Orono, ME 04469 USA.
RP DeFauw, SL (reprint author), Penn State Univ, Dept Agr Econ & Rural Sociol, University Pk, PA 16802 USA.
EM sld42@psu.edu
FU USDA's National Institute of Food and Agriculture (NIFA)
[2011-68004-30057]
FX The authors gratefully acknowledge funding from the USDA's National
Institute of Food and Agriculture (NIFA) under grant no.
2011-68004-30057. The expertise of Scott A. Samson, our colleague at the
Geosystems Research Institute, Mississippi State University (Starkville,
MS), is genuinely appreciated. Andrew Plant (University of Maine,
Cooperative Extension Educator, Houlton, ME) provided critical feedback
on crop and whole-farm budget refinement. Two anonymous reviewers are
thanked for their thoughtful suggested revisions. Steven J. Thomson and
Ruixiu Sui (USDA, ARS, Crop Production Systems Research Unit,
Stoneville, MS) reviewed an earlier draft of this manuscript.
Additionally, we are thankful to Tracy LaFleur, Alice Berry, and Peter
Gerritsen (undergraduates involved in the Sustainable Agriculture
Program at the University of Maine, Orono) for their assistance with
various aspects of database compilation for our geospatial studies of
cropping systems throughout New England.
NR 72
TC 2
Z9 2
U1 2
U2 24
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1099-209X
J9 AM J POTATO RES
JI Am. J. Potato Res.
PD DEC
PY 2012
VL 89
IS 6
BP 471
EP 488
DI 10.1007/s12230-012-9271-2
PG 18
WC Agronomy
SC Agriculture
GA 057QK
UT WOS:000312577900007
ER
PT J
AU Davis, RS
Hood, S
Bentz, BJ
AF Davis, Ryan S.
Hood, Sharon
Bentz, Barbara J.
TI Fire-injured ponderosa pine provide a pulsed resource for bark beetles
SO CANADIAN JOURNAL OF FOREST RESEARCH-REVUE CANADIENNE DE RECHERCHE
FORESTIERE
LA English
DT Article
ID MIXED-CONIFER FOREST; TREE MORTALITY; NORTHERN ARIZONA; RESIN DEFENSES;
SIERRA-NEVADA; OLEORESIN CHARACTERISTICS; RESTORATION TREATMENTS;
SURROGATE TREATMENTS; INTERMOUNTAIN WEST; PRESCRIBED FIRES
AB Bark beetles can cause substantial mortality of trees that would otherwise survive fire injuries. Resin response of fire-injured northern Rocky Mountain ponderosa pine (Pinus ponderosa Douglas ex P. Lawson & C. Lawson) and specific injuries that contribute to increased bark beetle attack susceptibility and brood production are unknown. We monitored ponderosa pine mortality and resin flow and bark beetle colonization and reproduction following a prescribed fire in Idaho and a wildfire in Montana. The level of fire-caused tree injury differed between the two sites, and the level of tree injury most susceptible to bark beetle attack and colonization also differed. Strip-attacked trees alive 3 years post-fire had lower levels of bole and crown injury than trees mass attacked and killed by bark beetles, suggesting that fire-injured trees were less well defended. Brood production of western pine beetle (Dendroctonus brevicomis LeConte) did not differ between fire-injured and uninjured trees, although mountain pine beetle (Dendroctonus ponderosae Hopkins) brood production was low in both tree types, potentially due to competition with faster developing bark beetle species that also colonized trees. Despite a large number of live trees remaining at both sites, bark beetle response to fire-injured trees pulsed and receded within 2 years post-fire, potentially due to a limited number of trees that could be easily colonized.
C1 [Davis, Ryan S.; Bentz, Barbara J.] US Forest Serv, USDA, Rocky Mt Res Stn, Logan, UT 84322 USA.
[Hood, Sharon] US Forest Serv, USDA, Rocky Mt Res Stn, Missoula, MT 59802 USA.
RP Bentz, BJ (reprint author), US Forest Serv, USDA, Rocky Mt Res Stn, 860 North,1200 East, Logan, UT 84322 USA.
EM bbentz@fs.fed.us
RI Hood, Sharon/E-5209-2015
OI Hood, Sharon/0000-0002-9544-8208
FU USDA Forest Service, Forest Health Protection [STDP R4-2004-02]; Rocky
Mountain Research Station
FX We thank Casey Anderson, Ryan Bracewell, Erin Davis, Donovan Gross,
Kevin Halverson, Matt Hansen, Scott Hoffmann, Greta Schen-Langenheim,
Jim Vandygriff, and Greg Zausen for their help in the field. We also
thank Vicki Saab, Scott Story, the Birds and Burns Program, and the
Krassel Work Center for their collaboration. Daniel Coster and Ron Ryel
provided statistical and ecological advice in the development of the
research design, and Dave Turner assisted in data analyses. Comments
from two anonymous reviewers and the Associate Editor greatly improved
the manuscript. This study was funded by USDA Forest Service, Forest
Health Protection (STDP R4-2004-02) and the Rocky Mountain Research
Station.
NR 61
TC 13
Z9 13
U1 2
U2 73
PU CANADIAN SCIENCE PUBLISHING, NRC RESEARCH PRESS
PI OTTAWA
PA 1200 MONTREAL ROAD, BUILDING M-55, OTTAWA, ON K1A 0R6, CANADA
SN 0045-5067
EI 1208-6037
J9 CAN J FOREST RES
JI Can. J. For. Res.-Rev. Can. Rech. For.
PD DEC
PY 2012
VL 42
IS 12
BP 2022
EP 2036
DI 10.1139/x2012-147
PG 15
WC Forestry
SC Forestry
GA 054ZG
UT WOS:000312383600002
ER
PT J
AU Lindenmayer, DB
Franklin, JF
Lohmus, A
Baker, SC
Bauhus, J
Beese, W
Brodie, A
Kiehl, B
Kouki, J
Pastur, GM
Messier, C
Neyland, M
Palik, B
Sverdrup-Thygeson, A
Volney, J
Wayne, A
Gustafsson, L
AF Lindenmayer, D. B.
Franklin, J. F.
Lohmus, A.
Baker, S. C.
Bauhus, J.
Beese, W.
Brodie, A.
Kiehl, B.
Kouki, J.
Martinez Pastur, G.
Messier, C.
Neyland, M.
Palik, B.
Sverdrup-Thygeson, A.
Volney, J.
Wayne, A.
Gustafsson, L.
TI A major shift to the retention approach for forestry can help resolve
some global forest sustainability issues
SO CONSERVATION LETTERS
LA English
DT Article
DE Ecologically sustainable forest management; altered logging practices;
forest biodiversity conservation; forest ecosystem processes; altered
forest policy; ecological forestry
ID GREEN-TREE RETENTION; VARIABLE RETENTION; ECOLOGICAL CONSEQUENCES;
WORLDS FORESTS; WET FORESTS; BIODIVERSITY; MANAGEMENT; CONSERVATION;
HARVEST; LAND
AB Approximately 85% of the global forest estate is neither formally protected nor in areas dedicated to intensive wood production (e.g., plantations). Given the spatial extent of unprotected forests, finding management approaches that will sustain their multiple environmental, economic, and cultural values and prevent their conversion to other uses is imperative. The major global challenge of native forest management is further demonstrated by ongoing steep declines in forest biodiversity and carbon stocks. Here, we suggest that an essential part of such managementsupplementing the protection of large reserves and sensitive areas within forest landscapes (e.g., aquatic features)is the adoption of the retention approach in forests where logging occurs. This ecological approach to harvesting provides for permanent retention of important selected structures (e.g., trees and decayed logs) to provide for continuity of ecosystem structure, function, and species composition in the postharvest forest. The retention approach supports the integration of environmental, economic, and cultural values and is broadly applicable to tropical, temperate, and boreal forests, adaptable to different management objectives, and appropriate in different societal settings. The widespread adoption of the retention approach would be one of the most significant changes in management practice since the onset of modern high-yield forestry.
C1 [Lindenmayer, D. B.] Australian Natl Univ, Fenner Sch Environm & Soc, Canberra, ACT 0200, Australia.
[Lindenmayer, D. B.] Australian Natl Univ, ARC Ctr Excellence Environm Decis, Canberra, ACT 0200, Australia.
[Franklin, J. F.] Univ Washington, Coll Environm, Sch Environm & Forest Sci, Seattle, WA 98195 USA.
[Lohmus, A.] Univ Tartu, Inst Ecol & Earth Sci, EE-51014 Tartu, Estonia.
[Baker, S. C.] Univ Tasmania, Sch Plant Sci, Hobart, Tas 7001, Australia.
[Bauhus, J.] Univ Freiburg, Inst Silviculture, D-79085 Freiburg, Germany.
[Beese, W.] Vancouver Isl Univ, Fac Sci & Technol, Dept Forestry, Nanaimo, BC V9R 5S5, Canada.
[Brodie, A.] Washington State Dept Nat Resources, Forest Resources & Conservat Div, Washington, WA 98501 USA.
[Kiehl, B.; Gustafsson, L.] Swedish Univ Agr Sci, Dept Ecol, SE-75007 Uppsala, Sweden.
[Kouki, J.] Univ Eastern Finland Joensuu, Sch Forest Sci, FI-80101 Joensuu, Finland.
[Martinez Pastur, G.] Ctr Austral Invest Cient CADIC CONICET, Tierra Del Fuego, Argentina.
[Messier, C.] Univ Quebec Montre UQAM, Ctr Etude Foret CEF, Dept Sci Biol, Montreal, PQ H2X 3Y5, Canada.
[Neyland, M.] Forestry Tasmania, Hobart, Tas 7000, Australia.
[Palik, B.] US Forest Serv, USDA, No Forest Stn, Grand Rapids, MN USA.
[Sverdrup-Thygeson, A.] Norwegian Univ Life Sci, Dept Ecol & Nat Resource Management, NO-1432 As, Norway.
[Sverdrup-Thygeson, A.] Norwegian Inst Nat Res NINA, NO-0349 Oslo, Norway.
[Volney, J.] Nat Resources Canada, Canadian Forest Serv, No Forestry Ctr, Edmonton, AB, Canada.
[Wayne, A.] Dept Environm & Conservat, Manjimup, WA 6258, Australia.
RP Lindenmayer, DB (reprint author), Australian Natl Univ, Fenner Sch Environm & Soc, Canberra, ACT 0200, Australia.
EM david.lindenmayer@anu.edu.au
RI Kouki, Jari/B-6241-2008; Baker, Susan/F-9307-2011; Bauhus,
Jurgen/G-4449-2013;
OI Baker, Susan/0000-0002-7593-0267; Bauhus, Jurgen/0000-0002-9673-4986;
Neyland, Mark/0000-0002-9755-9438; Martinez Pastur,
Guillermo/0000-0003-2614-5403
FU Foundation for Strategic Environmental Research (MISTRA); Swedish
Forestry Industry; Swedish University of Agricultural Sciences (SLU);
Ume a University; Forestry Research Institute of Sweden (Skogforsk)
FX The research for this article was funded through "Future Forests," a
multidisciplinary research program supported by the Foundation for
Strategic Environmental Research (MISTRA), the Swedish Forestry
Industry, the Swedish University of Agricultural Sciences (SLU), Ume a
University, and the Forestry Research Institute of Sweden (Skogforsk).
Anders Esselin facilitated the workshop where the article was prepared.
We thank the Editor and two anonymous referees for a wide range of
astute and thought-provoking comments that considerably improved an
earlier version of this article.
NR 72
TC 103
Z9 105
U1 13
U2 175
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1755-263X
J9 CONSERV LETT
JI Conserv. Lett.
PD DEC
PY 2012
VL 5
IS 6
BP 421
EP 431
DI 10.1111/j.1755-263X.2012.00257.x
PG 11
WC Biodiversity Conservation
SC Biodiversity & Conservation
GA 053XY
UT WOS:000312309800002
ER
PT J
AU Asah, ST
Blahna, DJ
AF Asah, Stanley T.
Blahna, Dale J.
TI Motivational functionalism and urban conservation stewardship:
implications for volunteer involvement
SO CONSERVATION LETTERS
LA English
DT Letter
DE Conservation psychology; conservation funding; urban biodiversity
conservation; motivations; recruitment; retention; Seattle-Tacoma
ID PARTICIPATION; MOTIVES; SERVICE
AB Conservation in urban areas faces growing financial challenges and inadequate stakeholder involvement. Conservation psychology can mitigate these challenges in many ways. One way is through conservation volunteerism, if we attend to and capitalize on volunteers motivations. Conservation volunteerism significantly contributes to ecological knowledge acquisition, and public education and awareness of conservation issues. In this study, we explored volunteers motivations and how those motivations influence frequency of participation in urban conservation activities. We found that volunteers frequency of participation is most motivated by personal and social benefits rather than by environment-related reasons. Environmental motivations, otherwise marginally significant, were more salient predictors of participation to the extent that personal and social motivations were met. We discuss how ecologically focused strategies are likely to be less effective for motivating more frequent participation than motivationally based appeals to personal and social motivations of urban conservation. We discuss implications for urban conservation stewardship initiatives and suggest ways that decision makers can harness volunteers personal and social motivations to meet urban conservation practice and policy goals.
C1 [Asah, Stanley T.] Univ Washington, Sch Environm & Forest Sci, Coll Environm, Seattle, WA 98195 USA.
[Blahna, Dale J.] US Forest Serv, USDA, Pacific NW Res Stn, Seattle, WA 98103 USA.
RP Asah, ST (reprint author), Univ Washington, Sch Environm & Forest Sci, Coll Environm, Box 352100, Seattle, WA 98195 USA.
EM stasah@uw.edu
NR 42
TC 13
Z9 13
U1 4
U2 43
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1755-263X
J9 CONSERV LETT
JI Conserv. Lett.
PD DEC
PY 2012
VL 5
IS 6
BP 470
EP 477
DI 10.1111/j.1755-263X.2012.00263.x
PG 8
WC Biodiversity Conservation
SC Biodiversity & Conservation
GA 053XY
UT WOS:000312309800007
ER
PT J
AU Swope, SM
Parker, IM
AF Swope, Sarah M.
Parker, Ingrid M.
TI Complex interactions among biocontrol agents, pollinators, and an
invasive weed: a structural equation modeling approach
SO ECOLOGICAL APPLICATIONS
LA English
DT Article
DE California, USA; Centaurea solstitialis; Chaetorellia succinea;
Eustenopus villosus; herbivory; pollination; seed predation; structural
equation modeling (SEM); yellow starthistle
ID PLANT CENTAUREA-SOLSTITIALIS; BIOLOGICAL-CONTROL; FRUIT PRODUCTION;
HERBIVORY; FITNESS; ATTRACTIVENESS
AB Herbivores, seed predators, and pollinators can exert strong impacts on their host plants. They can also affect the strength of each other's impact by modifying traits in their shared host, producing super-or sub-additive outcomes. This phenomenon is especially relevant to biological control of invasive plants because most invaders are attacked by multiple agents. Unfortunately, complex interactions among agents are rarely studied. We used structural equation modeling (SEM) to quantify the effect of two biocontrol agents and generalist pollinators on the invasive weed Centaurea solstitialis, and to identify and quantify the direct and indirect interaction pathways among them. The weevil Eustenopus villosus is both a bud herbivore and a predispersal seed predator; the fly Chaetorellia succinea is also a predispersal seed predator; Apis mellifera is the primary pollinator. We conducted this work at three sites spanning the longitudinal range of C. solstitialis in California (USA) from the coast to the Sierra Nevada Mountains. SEM revealed that bud herbivory had the largest total effect on the weed's fecundity. The direct effect of bud herbivory on final seed set was 2-4 times larger in magnitude than the direct effect of seed predation by both agents combined. SEM also revealed important indirect interactions; by reducing the number of inflorescences plants produced, bud herbivory indirectly reduced the plant's attractiveness to ovipositing seed predators. This indirect, positive pathway reduced bud herbivory's direct negative effect by 11-25%. In the same way, bud herbivory also reduced pollinator visitation, although the magnitude of this pathway was relatively small. E. villosus oviposition deterred C. succinea oviposition, which is unfortunate because C. succinea is the more voracious of the seed predators. Finally, C. succinea oviposition indirectly deterred pollinator visitation, thereby enhancing its net effect on the plant. This study demonstrates the powerful insights that can be gained from the SEM approach in understanding the multiple direct and indirect interactions among agents and pollinators and their effects on an invasive weed. Such an approach may improve our ability to manage weeds with biocontrol agents by identifying pathways that could be exploited by future agents and minimizing the possibility of interference with established agents.
C1 [Swope, Sarah M.] USDA ARS, Great Basin Rangelands Res Unit, Reno, NV 89512 USA.
[Swope, Sarah M.; Parker, Ingrid M.] Univ Calif Santa Cruz, Dept Ecol & Evolutionary Biol, Santa Cruz, CA 95064 USA.
[Swope, Sarah M.] USDA ARS, Exot & Invas Weeds Res Unit, Albany, CA 94710 USA.
RP Swope, SM (reprint author), USDA ARS, Great Basin Rangelands Res Unit, 920 Valley Rd, Reno, NV 89512 USA.
EM sarah.swope@ars.usda.gov
FU Jean Langenheim Fellowship in Plant Ecology and Evolution; NSF
[DEB-0808337]
FX Carla D'Antonio, Laurel Fox, and two anonymous reviewers provided
comments that improved this manuscript. Jim Grace graciously answered
questions about structural equation modeling. Marci Beitch, Maggie Barr,
Aaron Johnson, and Joe Braasch ably assisted with the collection of data
in the field and the lab. Joe Braasch deserves particular thanks for his
excellent work counting and categorizing thousands of seeds. S. M. Swope
was supported by the Jean Langenheim Fellowship in Plant Ecology and
Evolution and an NSF Doctoral Dissertation Improvement Grant DEB-0808337
during the data collection portion of this study.
NR 41
TC 7
Z9 7
U1 2
U2 81
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 1051-0761
J9 ECOL APPL
JI Ecol. Appl.
PD DEC
PY 2012
VL 22
IS 8
BP 2122
EP 2134
PG 13
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 057TQ
UT WOS:000312587300007
PM 23387114
ER
PT J
AU Hou, RX
Ouyang, Z
Li, YS
Wilson, GV
Li, HX
AF Hou, Ruixing
Ouyang, Zhu
Li, Yunsheng
Wilson, Glenn V.
Li, Hanxia
TI Is the change of winter wheat yield under warming caused by shortened
reproductive period?
SO ECOLOGY AND EVOLUTION
LA English
DT Article
DE Global warming; phenological stage; reproductive period; tiller; winter
wheat; yield
ID CLIMATE-CHANGE; SPRING WHEAT; TEMPERATURE VARIABILITY; GROWTH-RESPONSE;
CROP PRODUCTION; HEAT-STRESS; GRAIN-YIELD; IMPACTS; TILLAGE; AGRICULTURE
AB Previous reports from laboratory-controlled experiments and models considered that a shorter reproductive period could be the main reason for wheat yield reduction in the warmer world. However, this conclusion needs to be proved carefully by field-scale experiments. In this study, a field-scale continuous openwarming experiment was conducted to quantify the adjustment of winter wheat growth and yield under conventional tillage (CT) and no-till (NT) systems in the North China Plain (NCP). Canopy temperatures were warmed using infrared heaters between 1.0 and 1.6 degrees C (daytime and nighttime, respectively) above the control. Wheat yields under CT were not significantly reduced over the two seasons (2010 and 2011), but yields under NT were 3.3% and 6.1% lower, respectively. The growing seasons for both CT and NT were shortened 6 days in 2010 and 11 days in 2011; however, the reproductive periods were maintained. The shortened days were due to a significantly shorter springtime re-greening stage followed by minimal changes in other phenological stages (jointing, flag completed, heading, anthesis, and grain-filling). The temporal advance by warming resulted in lower growing-season mean air temperatures (MAT) for warmed plots than the control from 0.23 to 4.22 degrees C for the same subsequent phenological stages. Warming increased the number of tillers m(-2) and kernel weight, but tended to decrease the number of spikes m(-2) in the two tillage systems. The heavier kernels offset the yield reduction from smaller number of spikes. Warming increased the wheat aboveground biomass from 10% to 20% suggesting the potential to sequester more CO2. This study suggests that winter wheat might adjust its growth (shortened vegetative period to maintain reproductive period) to partly compensate for the negative effects from global warming in this temperate irrigated cropland.
C1 [Hou, Ruixing; Ouyang, Zhu; Li, Yunsheng; Li, Hanxia] Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Key Lab Ecosyst Network Observat & Modeling, Beijing 100101, Peoples R China.
[Hou, Ruixing; Ouyang, Zhu; Li, Yunsheng; Li, Hanxia] Chinese Acad Sci, Yucheng Comprehens Expt Stn, Beijing 100101, Peoples R China.
[Wilson, Glenn V.] ARS, USDA, Natl Sedimentat Lab, Oxford, MS 38655 USA.
RP Ouyang, Z (reprint author), Chinese Acad Sci, Inst Geog Sci & Nat Resources Res, Key Lab Ecosyst Network Observat & Modeling, Beijing 100101, Peoples R China.
EM ouyz@igsnrr.ac.cn
FU Chinese Academy of Sciences [XDA05050502]; National Natural Science
Foundation [31000207]
FX This study was supported by a grant from the Chinese Academy of Sciences
(XDA05050502) and the National Natural Science Foundation (31000207).
NR 46
TC 12
Z9 15
U1 7
U2 64
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 2045-7758
J9 ECOL EVOL
JI Ecol. Evol.
PD DEC
PY 2012
VL 2
IS 12
BP 2999
EP 3008
DI 10.1002/ece3.403
PG 10
WC Ecology; Evolutionary Biology
SC Environmental Sciences & Ecology; Evolutionary Biology
GA 055YF
UT WOS:000312453200006
PM 23301167
ER
PT J
AU Latif, QS
Heath, SK
Rotenberry, JT
AF Latif, Quresh S.
Heath, Sacha K.
Rotenberry, John T.
TI Effects of parents and Brown-headed Cowbirds (Molothrus ater) on nest
predation risk for a songbird
SO ECOLOGY AND EVOLUTION
LA English
DT Article
DE Mono Lake; nest parasitism; nest predation; nest survival; parental
behavior; population ecology; predator-prey interactions; Setophaga
petechia; Yellow Warbler
ID FIELDFARES TURDUS-PILARIS; ARTIFICIAL NEST; FOOD AVAILABILITY; BROOD
PARASITISM; BEHAVIOR; HOST; SURVIVAL; SUCCESS; BIRDS; PATTERNS
AB Nest predation limits avian fitness, so ornithologists study nest predation, but they often only document patterns of predation rates without substantively investigating underlying mechanisms. Parental behavior and predator ecology are two fundamental drivers of predation rates and patterns, but the role of parents is less certain, particularly for songbirds. Previous work reproduced microhabitat-predation patterns experienced by Yellow Warblers (Setophaga petechia) in the Mono Lake basin at experimental nests without parents, suggesting that these patterns were driven by predator ecology rather than predator interactions with parents. In this study, we further explored effects of post-initiation parental behavior (nest defense and attendance) on predation risk by comparing natural versus experimental patterns related to territory density, seasonal timing of nest initiation, and nest age. Rates of parasitism by Brown-headed Cowbirds (Molothrus ater) were high in this system (49% nests parasitized), so we also examined parasitism-predation relationships. Natural nest predation rates (NPR) correlated negatively with breeding territory density and nonlinearly (U-shaped relationship) with nest-initiation timing, but experimental nests recorded no such patterns. After adjusting natural-nest data to control for these differences from experimental nests other than the presence of parents (e. g., defining nest failure similarly and excluding nestling-period data), we obtained similar results. Thus, parents were necessary to produce observed patterns. Lower natural NPR compared with experimental NPR suggested that parents reduced predation rates via nest defense, so this parental behavior or its consequences were likely correlated with density or seasonal timing. In contrast, daily predation rates decreased with nest age for both nest types, indicating this pattern did not involve parents. Parasitized nests suffered higher rates of partial predation but lower rates of complete predation, suggesting direct predation by cowbirds. Explicit behavioral research on parents, predators (including cowbirds), and their interactions would further illuminate mechanisms underlying the density, seasonal, and nest age patterns we observed.
C1 [Latif, Quresh S.] Univ Calif Riverside, Dept Biol, Riverside, CA 92521 USA.
[Heath, Sacha K.] PRBO Conservat Sci, Petaluma, CA USA.
[Rotenberry, John T.] Univ Minnesota, Coll Biol Sci, St Paul, MN 55108 USA.
RP Latif, QS (reprint author), US Forest Serv, Rocky Mt Res Stn, 1648 S 7th Ave,Montana State Univ Campus, Bozeman, MT 59717 USA.
EM qlatif@fs.fed.us
FU PRBO Conservation Science; UC Riverside; PRBO; Mono Basin Bird
Chautauqua Research Grant; Center for Conservation Biology, Oikonos,
Advanced Energy Group; Rocky Mountain Research Station (U.S. Forest
Service); National Science Foundation
FX This work was a collaboration between PRBO Conservation Science's
long-term monitoring effort in the Eastern Sierra Nevada (supported by
numerous partners) and UC Riverside.; We thank PRBO biologists and
interns who collected field data, in particular L. Culp, C. McCreedy,
and C. Tonra found the lion's share of nests. U.S. Bureau of Land
Management, National Fish and Wildlife Foundation, USFS Region 5
Partners in Flight, Inyo National Forest, California Department of Fish
and Game, Mono Lake Tufa State Reserve, Eastern Sierra Audubon, and the
Mono Lake Committee supported PRBO's long-term monitoring effort. The
Mono Basin Bird Chautauqua Research Grant, UC Riverside, the Center for
Conservation Biology, Oikonos, Advanced Energy Group, and the Rocky
Mountain Research Station (U.S. Forest Service) provided financial and
logistical support to QSL. The Rocky Mountain Research Station also
covered publication costs. SKH was supported during manuscript
preparation by the National Science Foundation through a Graduate
Research Fellowship. The Los Angeles Department of Water and Power
provided access to City lands. J. Rochester, R. Kapur, and F. Johnson
donated finch eggs. We thank D. Reznick and L. Nunney for comments on an
early draft of this manuscript. W. Willis provided the photograph of a
female at her nest (Fig. 2). This is PRBO Contribution # 1891.
NR 86
TC 1
Z9 1
U1 3
U2 67
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 2045-7758
J9 ECOL EVOL
JI Ecol. Evol.
PD DEC
PY 2012
VL 2
IS 12
BP 3079
EP 3097
DI 10.1002/ece3.411
PG 19
WC Ecology; Evolutionary Biology
SC Environmental Sciences & Ecology; Evolutionary Biology
GA 055YF
UT WOS:000312453200013
PM 23301174
ER
PT J
AU Sanchez, JA
La Spina, M
Perera, OP
AF Antonio Sanchez, Juan
La Spina, Michelangelo
Perera, Omaththage P.
TI Analysis of the population structure of Macrolophus pygmaeus (Rambur)
(Hemiptera: Miridae) in the Palaearctic region using microsatellite
markers
SO ECOLOGY AND EVOLUTION
LA English
DT Article
DE Evolutionary history; geographic distribution; Mediterranean peninsulas;
mirids; molecular diversity; plant bugs
ID PINE PROCESSIONARY MOTH; TARNISHED PLANT BUG; LINKAGE DISEQUILIBRIUM;
MYZUS-PERSICAE; TRIALEURODES-VAPORARIORUM; THAUMETOPOEA-PITYOCAMPA;
POSTGLACIAL EXPANSION; HETEROPTERA MIRIDAE; GENETIC-VARIATION;
COMPUTER-PROGRAM
AB Macrolophus pygmaeus (Rambur) (Hemiptera: Miridae) is widely distributed throughout the Palaearctic region. The aim was to explain the current geographic distribution of the species by investigating its genetic population structure. Samples of M. pygmaeus were collected in 15 localities through its range of distribution. A sample from a commercial producer was also analyzed. A total of 367 M. pygmaeus were genotyped for nine microsatellite loci. Isolation by distance was tested by Mantel's test. The molecular structure of M. pygmaeus populations was inferred by UPGMA, AMOVA, Principal component and Bayesian analyses. The average number of alleles per locus per population was 5.5 (range: 3.1-7.8). Istanbul (Turkey) and Nimes (France) had the lowest (0.291) and the highest (0.626) expected heterozygosity (H-e), respectively. There was an increase in H-e from the Canary Islands to Nimes, and a progressive decrease thereafter. A significant negative correlation was found between allelic richness and H-e, and the distance of each population to the easternmost locality (Canary Islands). Significant linkage disequilibrium was observed in the populations from Turkey. F-ST (0.004-0.334) indicated a high population differentiation, with isolation by distance supported by a high correlation. Bayesian analyses, PCA, and UPGMA pointed to three main clusters: (1) Greece and Turkey, (2) Italy and France, and (3) southern Iberia and the Canary Islands. The recent evolutionary history of M. pygmaeus is inferred from the data as follows: (1) the reduction in the geographic distribution of the species to the Iberian, Italian, and Balkan peninsulas, and possibly southern France, during glaciations and re-colonization of northern Europe from its southern refuges; (2) the maintenance of high diversity in Iberia and Italy (and possibly southern France) during contraction periods, and bottlenecks in the Balkans; (3) introgression of the Italian-French lineage in northern Spain, naturally or through trade.
C1 [Antonio Sanchez, Juan; La Spina, Michelangelo] Inst Murciano Invest & Desarrollo Agr & Alimentar, Murcia 30150, Spain.
[Perera, Omaththage P.] ARS, So Insect Management Res Unit, USDA, Stoneville, MS 38776 USA.
RP Sanchez, JA (reprint author), Inst Murciano Invest & Desarrollo Agr & Alimentar, C Mayor 1, Murcia 30150, Spain.
EM juana.sanchez23@carm.es
RI La Spina, Michelangelo/A-3753-2009
OI La Spina, Michelangelo/0000-0002-0407-2453
FU Ministerio de Ciencia e Innovacion (Ramon y Cajal program); European
Social Fund; Southern Insect Management Research Laboratory (SIMRU),
USDA-ARS, Stoneville, Mississippi, USA; INIA; [RTA2006-00154-00-00]
FX This study was partially funded by the research project
RTA2006-00154-00-00. Juan Antonio Sanchez was awarded grants by the
Ministerio de Ciencia e Innovacion (Ramon y Cajal program) and the
European Social Fund.; We thank Linda Ballard, Mary Duke, and Sharon
Simpson, of USDA-ARS Mid-South Area Genomics and Bioinformatics Research
Unit for their technical assistance. This study was partially funded by
the research project RTA2006-00154-00-00. Juan Antonio Sanchez was
awarded grants by the Ministerio de Ciencia e Innovacion (Ramon y Cajal
program) and the European Social Fund. Caja Murcia funded in part the
stay of Juan Antonio Sanchez at the Southern Insect Management Research
Laboratory (SIMRU), USDA-ARS, Stoneville, Mississippi, USA. Michelangelo
La Spina was funded by a grant from INIA. We thank the Cabildo de
Tenerife for the permit to collect in the Island of Tenerife, and Dr.
Oscar Alomar and Dr. Yannie Trottin-Caudal for providing the samples
from Argentona (Catalonia) and Nimes, respectively. We are also grateful
to Drs. Clint Allen and Gordon Snodgrass of SIMRU, and Dr. Michael A
Caprio, Department of Biochemistry, Molecular Biology, Entomology, and
Plant Pathology, Mississippi State University for critically evaluating
an earlier version of this manuscript. We thank two anonymous reviewers
for their useful comments for the improvement of an earlier version of
the manuscript.
NR 77
TC 4
Z9 5
U1 2
U2 39
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 2045-7758
J9 ECOL EVOL
JI Ecol. Evol.
PD DEC
PY 2012
VL 2
IS 12
BP 3145
EP 3159
DI 10.1002/ece3.420
PG 15
WC Ecology; Evolutionary Biology
SC Environmental Sciences & Ecology; Evolutionary Biology
GA 055YF
UT WOS:000312453200018
PM 23301179
ER
PT J
AU He, HQ
Genovese, KJ
Swaggerty, CL
Nisbet, DJ
Kogut, MH
AF He, Haiqi
Genovese, Kenneth J.
Swaggerty, Christina L.
Nisbet, David J.
Kogut, Michael H.
TI A Comparative Study on Invasion, Survival, Modulation of Oxidative
Burst, and Nitric Oxide Responses of Macrophages (HD11), and Systemic
Infection in Chickens by Prevalent Poultry Salmonella Serovars
SO FOODBORNE PATHOGENS AND DISEASE
LA English
DT Article
ID IN-VIVO; MURINE SALMONELLOSIS; TYPHIMURIUM; ENTERITIDIS; IMMUNITY;
KINASE; CELLS; PATHOGENESIS; REPLICATION; SUPPRESSION
AB Poultry is a major reservoir for foodborne Salmonella serovars. Salmonella Typhimurium, Salmonella Enteritidis, Salmonella Heidelberg, Salmonella Kentucky, and Salmonella Senftenberg are the most prevalent serovars in U. S. poultry. Information concerning the interactions between different Salmonella species and host cells in poultry is lacking. In the present study, the above mentioned Salmonella serovars were examined for invasion, intracellular survival, and their ability to modulate oxidative burst and nitric oxide (NO) responses in chicken macrophage HD11 cells. All Salmonella serovars demonstrated similar capacity to invade HD11 cells. At 24 h post-infection, a 36-43% reduction of intracellular bacteria, in log(10)(CFU), was observed for Salmonella Typhimurium, Salmonella Heidelberg, Salmonella Kentucky, and Salmonella Senftenberg, whereas a significantly lower reduction (16%) was observed for Salmonella Enteritidis, indicating its higher resistance to the killing by HD11 cells. Production of NO was completely diminished in HD11 cells infected with Salmonella Typhimurium and Salmonella Enteritidis, but remained intact when infected with Salmonella Heidelberg, Salmonella Kentucky, and Salmonella Senftenberg. Phorbol myristate acetate-stimulated oxidative burst in HD11 cells was greatly impaired after infection by each of the five serovars. When newly hatched chickens were challenged orally, a high rate (86-98%) of systemic infection (Salmonella positive in liver/spleen) was observed in birds challenged with Salmonella Typhimurium, Salmonella Enteritidis, Salmonella Heidelberg, and Salmonella Kentucky, while only 14% of the birds were Salmonella Senftenberg positive. However, there was no direct correlation between systemic infection and in vitro differential intracellular survival and modulation of NO response among the tested serovars.
C1 [He, Haiqi; Genovese, Kenneth J.; Swaggerty, Christina L.; Nisbet, David J.; Kogut, Michael H.] ARS, SPARC, USDA, College Stn, TX 77845 USA.
RP He, HQ (reprint author), ARS, SPARC, USDA, 2881 F&B Rd, College Stn, TX 77845 USA.
EM haiqi.he@ars.usda.gov
NR 54
TC 8
Z9 8
U1 0
U2 9
PU MARY ANN LIEBERT INC
PI NEW ROCHELLE
PA 140 HUGUENOT STREET, 3RD FL, NEW ROCHELLE, NY 10801 USA
SN 1535-3141
J9 FOODBORNE PATHOG DIS
JI Foodborne Pathog. Dis.
PD DEC
PY 2012
VL 9
IS 12
BP 1104
EP 1110
DI 10.1089/fpd.2012.1233
PG 7
WC Food Science & Technology
SC Food Science & Technology
GA 055WM
UT WOS:000312448600008
PM 23067396
ER
PT J
AU Fischer, AP
AF Fischer, A. Paige
TI Identifying policy target groups with qualitative and quantitative
methods: The case of wildfire risk on nonindustrial private forest lands
SO FOREST POLICY AND ECONOMICS
LA English
DT Article
DE Policy design; Policy target groups; Segmentation; Nonindustrial private
forest owners; Fuel reduction policy
ID WESTERN UNITED-STATES; DRY FORESTS; FIRE RISK; OWNERS; MANAGEMENT;
LANDOWNERS; FUEL; USA; INSTRUMENTS; COOPERATION
AB Designing policies to harness the potential of heterogeneous target groups such as nonindustrial private forest owners to contribute to public policy goals can be challenging. The behaviors of such groups are shaped by their diverse motivations and circumstances. Segmenting heterogeneous target groups into more homogeneous subgroups may improve the chances of successfully identifying policy strategies to influence their behavior. Findings from a multimethod study of nonindustrial private forest owners in eastern Oregon suggest four unique subgroups of owners with different fuel management motivations and suitabilities for policy tools: commodity managers could benefit from market-based incentives; amenity managers could benefit from capacity building programs paired with symbolic campaigns; recreational managers could benefit from public incentives provided through consultants or contractors who can help plan the work; and passive managers may benefit from opportunities to respond to the policy strategies designed for the other groupings until more information can be gathered. Incorporating qualitative analysis of interview data with statistical analysis of survey data improved understanding of the groupings and appropriate policy strategies for them. Published by Elsevier B.V.
C1 USDA, Forest Serv, Pacific NW Res Stn, Western Wildland Environm Threat Assessment Ctr, Corvallis, OR 97331 USA.
RP Fischer, AP (reprint author), USDA, Forest Serv, Pacific NW Res Stn, Western Wildland Environm Threat Assessment Ctr, 3200 SW Jefferson Way, Corvallis, OR 97331 USA.
EM paigefischer@fs.fed.us
FU National Fire Plan
FX I sincerely thank the respondents for taking time to participate in the
interviews and respond to the surveys. P. Cunningham conducted a
statistical review of the paper and provided other helpful statistical
advice. J. Kline reviewed the paper and provided advice on segmentation.
Advice on the study design was provided by S. Charnley and J. Bliss. K.
Olsen provided assistance with GIS and C. Olsen provided statistical
assistance. Oregon State University and Oregon Department of Forestry,
particularly G. Lettman, helped support and administer the research. T.
Gamache and others at Oregon Department of Forestry were responsible for
survey logistics and data management. Funding was provided in part by
National Fire Plan.
NR 53
TC 7
Z9 7
U1 1
U2 29
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1389-9341
J9 FOREST POLICY ECON
JI Forest Policy Econ.
PD DEC
PY 2012
VL 25
BP 62
EP 71
DI 10.1016/j.forpol.2012.08.008
PG 10
WC Forestry
SC Forestry
GA 048QL
UT WOS:000311927500008
ER
PT J
AU Miller, KA
Snyder, SA
Kilgore, MA
AF Miller, Kristell A.
Snyder, Stephanie A.
Kilgore, Michael A.
TI An assessment of forest landowner interest in selling forest carbon
credits in the Lake States, USA
SO FOREST POLICY AND ECONOMICS
LA English
DT Article
DE Forest carbon credits; Willingness to accept; Family forest owners;
Carbon offset
ID CONTINGENT VALUATION; OWNERS NEED; MECHANISMS; MANAGEMENT; STEWARDSHIP;
CERTAINTY; VIRGINIA; FAILURE
AB The nation's family forest lands can be an important contributor to carbon sequestration efforts. Yet very little is known about how family forest landowners view programs that enable them to sell carbon credits generated from the growth of their forest and the compensation that would be required to encourage a meaningful level of participation. To address this information gap, we conducted a study to identify and quantify family forest landowner interest in participating in a voluntary carbon market trading program in the Lake States, USA. A mail survey was administered to 2,200 randomly selected family forest owners in Michigan, Wisconsin, and Minnesota. The questionnaire assessed landowner interest in participating in a hypothetical carbon credit trading program and sought information on landowner objectives and practices, perspectives on carbon credit programs and forest land characteristics. A total of 850 usable responses were received. A logistic regression model was developed to examine the factors affecting participation in a forest carbon offset project by family forest owners and estimate landowner participation probability. Results show that carbon program characteristics alongside landowner and parcel characteristics are associated with the decision to participate in a carbon credit program. Specifically, carbon credit payment amount, contract length, gender, value placed on other non-market forest amenities, need for additional income, attitude towards climate change, absentee status, land tenure and total acres owned were found to be significant determinants. Our findings indicate that carbon sequestration management may align with the ownership goals of many family forest owners in the Lake States. (C) 2012 Elsevier B.V. All rights reserved.
C1 [Miller, Kristell A.; Kilgore, Michael A.] Univ Minnesota, Dept Forest Resources, St Paul, MN 55108 USA.
[Snyder, Stephanie A.] USDA, Forest Serv, No Res Stn, St Paul, MN USA.
RP Miller, KA (reprint author), Univ Minnesota, Dept Forest Resources, 115 Green Hall,1530 Cleveland Ave N, St Paul, MN 55108 USA.
EM mill4662@umn.edu
FU USDA Forest Service, Northern Research Station
FX This material is based upon work supported by the USDA Forest Service,
Northern Research Station.
NR 68
TC 18
Z9 18
U1 2
U2 37
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1389-9341
J9 FOREST POLICY ECON
JI Forest Policy Econ.
PD DEC
PY 2012
VL 25
BP 113
EP 122
DI 10.1016/j.forpol.2012.09.009
PG 10
WC Forestry
SC Forestry
GA 048QL
UT WOS:000311927500013
ER
PT J
AU Madubata, C
Dunams-Morel, DB
Elkin, B
Oksanen, A
Rosenthal, BM
AF Madubata, Chioma
Dunams-Morel, Detiger B.
Elkin, Brett
Oksanen, Antti
Rosenthal, Benjamin M.
TI Evidence for a recent population bottleneck in an Apicomplexan parasite
of caribou and reindeer, Besnoitia tarandi
SO INFECTION GENETICS AND EVOLUTION
LA English
DT Article
DE Besnoitia; Caribou; Reindeer; Bottleneck; Toxoplasma gondii; Arctic
ID TOXOPLASMA-GONDII; RANGIFER-TARANDUS; PLASMODIUM-VIVAX; SEXUAL
RECOMBINATION; SARCOCYSTIS-NEURONA; EXTRACHROMOSOMAL DNA; GENETIC
DIVERSITY; NEOSPORA-CANINUM; RIBOSOMAL DNA; CLONAL THEORY
AB The evolutionary history and epidemiology of parasites may be reflected in the extent and geographic distribution of their genetic variation. Among coccidian parasites, the population structure of only Toxoplasma gondii has been extensively examined, Intraspecific variation in other coccidia, for example, those assigned to the genus Besnoitia, remains poorly defined. Here, we characterize the extent of genetic variation among populations of Besnoitia tarandi, a parasite whose intermediate host: include reindeer/caribou (Rangifer tarandus). Isolates from the Canadian Arctic and Finnish sub-Arctic were genotyped at six microsatellite loci, the first internal transcribed spacer region of nuclear rDNA, and the RNA polymerase beta subunit (rpoB) encoded in the plastid genome. Remarkably, all isolates exhibited the same multilocus genotype, regardless of the isolate's geographic origin. This absolute monomorphism occurred despite the capacity of these loci to vary, as established by evident differentiation between B. tarandi and two other species of Besnoitia, and variation among four isolates of B. besnoiti. The surprising lack of genetic variation across the sampled range suggests that B. tarandi may have experienced a recent population bottleneck. Published by Elsevier B.V.
C1 [Madubata, Chioma; Dunams-Morel, Detiger B.; Rosenthal, Benjamin M.] USDA, Anim Parasit Dis Lab, ARS, Henry A Wallace Agr Res Ctr, Beltsville, MD 20705 USA.
[Elkin, Brett] Govt NW Terr, Dept Resources Environm & Nat Resources, Yellowknife, NT X1A 3S8, Canada.
[Oksanen, Antti] Finnish Food Safety Author Evira, Prod Anim & Wildlife Hlth Res Unit, FIN-90590 Oulu, Finland.
RP Rosenthal, BM (reprint author), USDA, Anim Parasit Dis Lab, ARS, Henry A Wallace Agr Res Ctr, Beltsville, MD 20705 USA.
EM Benjamin.Rosenthal@ars.usda.gov
OI Rosenthal, Benjamin/0000-0002-0224-3773
FU Eleanor Roosevelt High School Science and Technology Research Practicum;
ARS Summer Internship Program; ARS Project [1265-140-11]
FX We would like to thank Drs. Varda Shkap, Gereon Schares, and Arcangelo
Gentile for contributing isolates of Besnoitia besnoiti. C. Madubata was
supported through the Eleanor Roosevelt High School Science and
Technology Research Practicum and the ARS Summer Internship Program.
This project is supported by ARS Project 1265-140-11.
NR 58
TC 9
Z9 10
U1 1
U2 19
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1567-1348
J9 INFECT GENET EVOL
JI Infect. Genet. Evol.
PD DEC
PY 2012
VL 12
IS 8
BP 1605
EP 1613
DI 10.1016/j.meegid.2012.06.007
PG 9
WC Infectious Diseases
SC Infectious Diseases
GA 055PN
UT WOS:000312429000003
PM 22742966
ER
PT J
AU Diel, DG
da Silva, LHA
Liu, HL
Wang, ZL
Miller, PJ
Afonso, CL
AF Diel, Diego G.
da Silva, Luciana H. A.
Liu, Hualei
Wang, Zhiliang
Miller, Patti J.
Afonso, Claudio L.
TI Genetic diversity of avian paramyxovirus type 1: Proposal for a unified
nomenclature and classification system of Newcastle disease virus
genotypes
SO INFECTION GENETICS AND EVOLUTION
LA English
DT Article
DE APMV-1; NDV; Newcastle disease; Evolution; Epidemiology; Genotyping
ID REVERSE TRANSCRIPTION-PCR; FUSION PROTEIN; PHYLOGENETIC
CHARACTERIZATION; EVOLUTIONARY DISTANCE; MAXIMUM-LIKELIHOOD; VACCINE
CANDIDATE; DOMESTIC CHICKENS; CLEAVAGE SITE; GENOME SIZE; RNA VIRUSES
AB The avian paramyxovirus type 1 (APMV-1), or Newcastle disease virus (NDV), comprise a diverse group of viruses with a single-stranded, negative-sense RNA genome. Historically, two systems have been simultaneously used to classify NOV isolates into lineages or genotypes, generating confusion in the nomenclature and discrepancies in the assignment of genetic groups. In the present study we assessed the genetic diversity of the avian paramyxovirus type-1 (APMV-1) and propose a unified nomenclature and a classification system based on objective criteria to separate NDV into genotypes. Complete F gene sequences of class I (n = 110) and class II (n = 602) viruses were used for the phylogenetic reconstruction and to identify distinct taxonomic groups. The mean interpopulational evolutionary distance was estimated (10%) and set as the cutoff value to assign new genotypes. Results of our study revealed that class I viruses comprise a single genotype, while class II contains 15 genetic groups including 10 previously established (I-IX, and XI) and five new genotypes (X, XII, XIII, XIV and XV). Sub-genotypes were identified among class I and class II genotypes. Adoption of a unified nomenclature and of objective criteria to classify NDV isolates will facilitate studies on NOV epidemiology, evolution, disease control and diagnostics. Published by Elsevier B.V.
C1 [Diel, Diego G.; da Silva, Luciana H. A.; Miller, Patti J.; Afonso, Claudio L.] USDA ARS, SE Poultry Res Lab, Athens, GA 30605 USA.
[da Silva, Luciana H. A.] Univ Estadual Campinas, Inst Biol, Lab Anim Virol, Campinas, SP, Brazil.
[Liu, Hualei; Wang, Zhiliang] CAHEC, Natl Reference Lab Newcastle Dis, Qingdao 266032, Peoples R China.
RP Afonso, CL (reprint author), USDA ARS, SE Poultry Res Lab, 934 Coll Stn Rd, Athens, GA 30605 USA.
EM claudio.afonso@ars.usda.gov
FU USDA [6612-32000-064-00D]
FX We thank Dawn Williams-Coplin and Tim Olivier for technical assistance,
and the SEPRL sequencing facility personnel for nucleotide sequencing.
This work was supported by USDA funding CRIS#6612-32000-064-00D.
NR 58
TC 75
Z9 82
U1 2
U2 25
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1567-1348
J9 INFECT GENET EVOL
JI Infect. Genet. Evol.
PD DEC
PY 2012
VL 12
IS 8
BP 1770
EP 1779
DI 10.1016/j.meegid.2012.07.012
PG 10
WC Infectious Diseases
SC Infectious Diseases
GA 055PN
UT WOS:000312429000025
PM 22892200
ER
PT J
AU Molnar, K
Ostoros, G
Dunams-Morel, D
Rosenthal, BM
AF Molnar, Kalman
Ostoros, Gyoergyi
Dunams-Morel, Detiger
Rosenthal, Benjamin M.
TI Eimeria that infect fish are diverse and are related to, but distinct
from, those that infect terrestrial vertebrates
SO INFECTION GENETICS AND EVOLUTION
LA English
DT Article
DE Eimeria; Coccidia; Evolution; Fish; Goussia; Phylogeny
ID MAXIMUM-LIKELIHOOD; COCCIDIAN PARASITES; MARINE FISH; APICOMPLEXA;
GOUSSIA; SEQUENCE; SUBSTITUTION; PHYLOGENY; MODELTEST; SPOROZOA
AB The Eimeria are ubiquitous parasites (Phylum: Apicomplexa; family: Coccidia) of the gut epithelium of vertebrates which complete their development in a single host species and whose sporocysts may be recognized by the presence of a Stieda body through which their sporozoites excyst. Their diversity and relationship to other kinds of coccidia have been successfully explored by molecular systematic studies based on the sequencing the 18S ribosomal DNA. To date, most attention has been paid to the diversity and evolutionary relationships of Eimeria spp. parasitizing terrestrial vertebrates, most especially those species infecting domesticated birds and mammals. Regrettably, no Eimeria have yet been considered from the Earth's first vertebrates: the fish. If Eimeria first evolved in fish, then extant piscine parasites should comprise a deeply branching assemblage at the base of well-constructed phylogenetic trees. Here, we sequenced portions of ribosomal DNA from several such isolates (from Eimeria anguillae, Eimeria daviesae, Eimeria percae, Eimeria variabilis, Eimeria rutili and Eimeria nemethi) and compared them to one another as well as to other available sequences from the parasites of fish and terrestrial vertebrates, in order to better understand their diversity and origins. By establishing that such piscine parasites comprise a deeply branching clade at the base of the Eimeriidae, these data substantiate the hypothesis that Eimeria may have originated in fish. Plainly, a great deal of coccidian diversity awaits future discovery and description. Published by Elsevier B.V.
C1 [Molnar, Kalman; Ostoros, Gyoergyi] Hungarian Acad Sci, Agr Res Ctr, Vet Med Res Inst, H-1051 Budapest, Hungary.
[Dunams-Morel, Detiger; Rosenthal, Benjamin M.] USDA ARS, Beltsville, MD USA.
RP Rosenthal, BM (reprint author), 10300 Baltimore Ave,BARC East Bldg 1180, Beltsville, MD 20705 USA.
EM Benjamin.rosenthal@ars.usda.gov
OI Rosenthal, Benjamin/0000-0002-0224-3773
FU Hungarian Scientific Research Fund (OTKA) [K71837, K100132]; USDA-ARS
[1265-42000-011-00D]; Cooperative Research Fellowship from the
Organization for Economic Cooperation and Development
FX This work was partially financed by projects K71837 and K100132 of the
Hungarian Scientific Research Fund (OTKA), USDA-ARS Project
1265-42000-011-00D, and a Cooperative Research Fellowship from the
Organization for Economic Cooperation and Development. We also
gratefully acknowledge technical assistance received from Jeremy Rualo
Sr. and Sidney Markowitz, Dr. David Morrison for providing alignments
and model parameters, and two anonymous reviewers for their helpful
suggestions.
NR 39
TC 5
Z9 6
U1 2
U2 33
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1567-1348
J9 INFECT GENET EVOL
JI Infect. Genet. Evol.
PD DEC
PY 2012
VL 12
IS 8
BP 1810
EP 1815
DI 10.1016/j.meegid.2012.06.017
PG 6
WC Infectious Diseases
SC Infectious Diseases
GA 055PN
UT WOS:000312429000028
PM 22824419
ER
PT J
AU Fagerquist, CK
Sultan, O
Carter, MQ
AF Fagerquist, Clifton K.
Sultan, Omar
Carter, Michelle Q.
TI Possible Evidence of Amide Bond Formation Between Sinapinic Acid and
Lysine-Containing Bacterial Proteins by Matrix-Assisted Laser
Desorption/Ionization (MALDI) at 355 nm
SO JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
LA English
DT Article
DE Ammonium carboxylate salt; MALDI; Sinapinic acid; Amide bond; Lysine
residue; N-terminus; Equilibrium retrogradation; 355 nm; Bacteria; CHCA;
Protein; HdeA; HdeB; Dissociative loss
ID FLIGHT MASS-SPECTROMETRY; TOP-DOWN PROTEOMICS; IN-SOURCE DECAY; RAPID
IDENTIFICATION; INTACT MICROORGANISMS; ESCHERICHIA-COLI; MS; DESORPTION;
BIOMARKERS; PEPTIDES
AB We previously reported the apparent formation of matrix adducts of 3,5-dimethoxy-4-hydroxy-cinnamic acid (sinapinic acid or SA) via covalent attachment to disulfide bond-containing proteins (HdeA, Hde, and YbgS) from bacterial cell lysates ionized by matrix-assisted laser desorption/ionization (MALDI) time-of-flight-time-of-flight tandem mass spectrometry (TOF-TOF-MS/MS) and post-source decay (PSD). We also reported the absence of adduct formation when using alpha-cyano-4-hydroxycinnamic acid (CHCA) matrix. Further mass spectrometric analysis of disulfide-intact and disulfide-reduced over-expressed HdeA and HdeB proteins from lysates of gene-inserted E. coli plasmids suggests covalent attachment of SA occurs not at cysteine residues but at lysine residues. In this revised hypothesis, the attachment of SA is preceded by formation of a solid phase ammonium carboxylate salt between SA and accessible lysine residues of the protein during sample preparation under acidic conditions. Laser irradiation at 355 nm of the dried sample spot results in equilibrium retrogradation followed by nucleophilic attack by the amine group of lysine at the carbonyl group of SA and subsequent amide bond formation and loss of water. The absence of CHCA adducts suggests that the electron-withdrawing effect of the alpha-cyano group of this matrix may inhibit salt formation and/or amide bond formation. This revised hypothesis is supported by dissociative loss of SA (-224 Da) and the amide-bound SA (-206 Da) from SA-adducted HdeA and HdeB ions by MS/MS (PSD). It is proposed that cleavage of the amide-bound SA from the lysine side-chain occurs via rearrangement involving a pentacyclic transition state followed by hydrogen abstraction/migration and loss of 3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-ynal (-206 Da).
C1 [Fagerquist, Clifton K.; Sultan, Omar; Carter, Michelle Q.] ARS, USDA, Western Reg Res Ctr, Albany, CA 94710 USA.
RP Fagerquist, CK (reprint author), ARS, USDA, Western Reg Res Ctr, 800 Buchanan St, Albany, CA 94710 USA.
EM clifton.fagerquist@ars.usda.gov
FU USDA-ARS CRIS [5325-42000-047-00D]
FX The authors are grateful to Jacqueline W. Louie for assistance in
microbiology and plasmid development. This work was supported by
USDA-ARS CRIS project 5325-42000-047-00D. USDA is an equal opportunity
provider and employer.
NR 48
TC 7
Z9 7
U1 1
U2 22
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1044-0305
J9 J AM SOC MASS SPECTR
JI J. Am. Soc. Mass Spectrom.
PD DEC
PY 2012
VL 23
IS 12
BP 2102
EP 2114
DI 10.1007/s13361-012-0490-z
PG 13
WC Biochemical Research Methods; Chemistry, Analytical; Chemistry,
Physical; Spectroscopy
SC Biochemistry & Molecular Biology; Chemistry; Spectroscopy
GA 051RG
UT WOS:000312144100009
PM 23055076
ER
PT J
AU Li, EC
Lim, C
Klesius, P
Cai, CF
AF Li, Erchao
Lim, Chhorn
Klesius, Phillip
Cai, Chunfang
TI Enhancement Effects of Dietary Wheat Distiller's Dried Grains with
Solubles on Growth, Immunity, and Resistance to Edwardsiella ictaluri
Challenge of Channel Catfish, Ictalurus punctatus
SO JOURNAL OF THE WORLD AQUACULTURE SOCIETY
LA English
DT Article
ID X MORONE-SAXATILIS; OREOCHROMIS-NILOTICUS L.; NILE-TILAPIA;
STREPTOCOCCUS-INIAE; ETHANOL COPRODUCTS; SOYBEAN-MEAL;
NUTRITIONAL-VALUE; FEED-UTILIZATION; BODY-COMPOSITION; PROTEIN-SOURCE
AB Juvenile channel catfish were fed for 12 wk with diets containing wheat distiller's dried grains with solubles (WDDGS) at levels of 0 (diet 1), 10, 20, 30, and 40% without lysine supplementation (diets 25) or with lysine supplementation (diets 69) as substitutes of soybean and corn meal mixture. Fish fed diet 5 had the lowest weight gain (WG), feed efficiency ratio (FER), protein efficiency ratio (PER), feed intake (FI), and survival. Fish fed diets 79 had significantly higher WG, FER, and PER than fish fed diet 1. Body protein decreased in fish fed diets 4 and 5, while body lipid tended to increase in fish fed WDDGS-containing diets. Fish fed diet 5 developed anemia. The number of days to first mortality was delayed and cumulative mortality 21-d post-challenge with Edwardsiella ictaluri was lower in fish fed WDDGS-containing diets relative to fish fed diet 1. Further decrease in mortality was obtained in fish fed diets with 2040% WDDGS, regardless of lysine supplementation. Serum protein, immunoglobulin, and lysozyme were unaffected by dietary treatments. Serum complement and antibody titer against E. ictaluri significantly differed among treatments but did not appear to be related to cumulative mortality following experimental challenge.
C1 [Lim, Chhorn; Klesius, Phillip] USDA ARS, Aquat Anim Hlth Res Unit, Auburn, AL 36832 USA.
[Li, Erchao] E China Normal Univ, Sch Life Sci, Shanghai 200062, Peoples R China.
[Cai, Chunfang] Soochow Univ, Sch Basic Med & Biol Sci, Suzhou 215123, Peoples R China.
RP Lim, C (reprint author), USDA ARS, Aquat Anim Hlth Res Unit, Auburn, AL 36832 USA.
NR 68
TC 2
Z9 2
U1 0
U2 10
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0893-8849
J9 J WORLD AQUACULT SOC
JI J. World Aquacult. Soc.
PD DEC
PY 2012
VL 43
IS 6
BP 814
EP 827
DI 10.1111/j.1749-7345.2012.00605.x
PG 14
WC Fisheries
SC Fisheries
GA 053WF
UT WOS:000312305300006
ER
PT J
AU Kane, ES
AF Kane, Evan S.
TI ECOSYSTEM CARBON STORAGE Squeezing the Arctic carbon balloon
SO NATURE CLIMATE CHANGE
LA English
DT Editorial Material
ID TUNDRA
C1 [Kane, Evan S.] US Forest Serv, No Res Stn, Houghton, MI 49931 USA.
[Kane, Evan S.] Michigan Technol Univ, Sch Forest Resources & Environm Sci, Houghton, MI 49931 USA.
RP Kane, ES (reprint author), US Forest Serv, No Res Stn, 410 MacInnes Dr, Houghton, MI 49931 USA.
EM eskane@mtu.edu
NR 9
TC 2
Z9 2
U1 1
U2 27
PU NATURE PUBLISHING GROUP
PI LONDON
PA MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
SN 1758-678X
J9 NAT CLIM CHANGE
JI Nat. Clim. Chang.
PD DEC
PY 2012
VL 2
IS 12
BP 841
EP 842
PG 2
WC Environmental Sciences; Environmental Studies; Meteorology & Atmospheric
Sciences
SC Environmental Sciences & Ecology; Meteorology & Atmospheric Sciences
GA 055RF
UT WOS:000312433700013
ER
PT J
AU Spatz, SJ
Volkening, JD
Gimeno, IM
Heidari, M
Witter, RL
AF Spatz, Stephen J.
Volkening, Jeremy D.
Gimeno, Isabel M.
Heidari, Mohammad
Witter, Richard L.
TI Dynamic equilibrium of Marek's disease genomes during in vitro serial
passage
SO VIRUS GENES
LA English
DT Article
DE Marek's disease; Marek's disease virus; Sequencing; Polymorphisms;
Serial passage; Gallid herpesvirus 2; Pyrosequencing; Virulence
ID HERPES-SIMPLEX-VIRUS; BACTERIAL ARTIFICIAL CHROMOSOMES; VIL-8 DELETION
MUTANT; VIRULENT PLUS STRAIN; CELL-LINE; NUCLEOTIDE-SEQUENCE; POINT
MUTATIONS; DNA; REPLICATION; SEROTYPE-1
AB Attenuation of Gallid herpesvirus-2 (GaHV-2), the causative agent of Marek's disease, can occur through serial passage of a virulent field isolate in avian embryo fibroblasts. In order to gain a better understanding of the genes involved in attenuation and associate observed changes in phenotype with specific genetic variations, the genomic DNA sequence of a single GaHV-2 virulent strain (648A) was determined at defined passage intervals. Biological characterization of these "interval-isolates" in chickens previously indicated that the ability to induce transient paralysis was lost by passages 40 and the ability to induce persistent neurological disease was lost after passage 80, coincident with the loss of neoplastic lesion formation. Deep sequencing of the interval-isolates allowed for a detailed cataloguing of the mutations that exist within a single passage population and the frequency with which a given mutation occurs across passages. Gross genetic alterations were identified in both novel and well-characterized genes and cis-acting regions involved in replication and cleavage/packaging. Deletions in genes encoding the virulence factors vLipase, vIL8, and RLORF4, as well as a deletion in the promoter of ICP4, appeared between passages 61 and 101. Three mutations in the virus-encoded telomerase which predominated in late passages were also identified. Overall, the frequency of mutations fluctuated greatly during serial passage and few genetic changes were absolute. This indicates that serial passage of GaHV-2 results in the generation of a collection of genomes with limited sequence heterogeneity.
C1 [Spatz, Stephen J.] ARS, SE Poultry Res Lab, USDA, Athens, GA 30605 USA.
[Volkening, Jeremy D.] BASE2BIO, Madison, WI 53714 USA.
[Gimeno, Isabel M.] N Carolina State Univ, Dept Populat Hlth & Pathobiol, Raleigh, NC 27606 USA.
[Heidari, Mohammad; Witter, Richard L.] ARS, Avian Dis & Oncol Lab, USDA, E Lansing, MI 48823 USA.
RP Spatz, SJ (reprint author), ARS, SE Poultry Res Lab, USDA, 934 Coll Stn Rd, Athens, GA 30605 USA.
EM sspatz@seprl.usda.gov
OI Volkening, Jeremy/0000-0002-8892-7155
NR 73
TC 8
Z9 8
U1 0
U2 2
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0920-8569
J9 VIRUS GENES
JI Virus Genes
PD DEC
PY 2012
VL 45
IS 3
BP 526
EP 536
DI 10.1007/s11262-012-0792-z
PG 11
WC Genetics & Heredity; Virology
SC Genetics & Heredity; Virology
GA 056ZZ
UT WOS:000312532600012
PM 22923089
ER
PT J
AU Reyna, R
Cooke, P
Grum, D
Cook, D
Creamer, R
AF Reyna, Roxanna
Cooke, Peter
Grum, Daniel
Cook, Daniel
Creamer, Rebecca
TI Detection and localization of the endophyte Undifilum oxytropis in
locoweed tissues
SO BOTANY-BOTANIQUE
LA English
DT Article
DE Undifilum; locoweed; electron microscopy; confocal microscopy
ID ALPHA-MANNOSIDASE INHIBITOR; NORTHEASTERN NEW-MEXICO; FUNGAL ENDOPHYTES;
RHIZOCTONIA-LEGUMINICOLA; INDOLIZIDINE ALKALOIDS; ELECTRON-MICROSCOPY;
GENE-EXPRESSION; SWAINSONINE; ASTRAGALUS; GRASSES
AB Poisoning of livestock owing to grazing on locoweeds results in significant economic losses in the western United States. Some Oxytropis spp. locoweeds contain a seed-transmitted endophytic fungus, Undifilum oxytropis, which produces the toxic alkaloid swainsonine. We sought to localize and characterize growth patterns of the fungus within leaves and petioles of Oxytropis lambertii Pursh and Oxytropis sericea Nutt. to help define the types of interactions between the fungus and its hosts. Vegetative hyphae were observed within locoweed tissues using integrated imaging. Topographical images from scanning electron microscopy revealed the presence of the endophyte in the pith tissue of petioles. The fungus was identified between plant cells but did not appear to penetrate host cells. Transmission electron microscopy images of thin sections revealed that hyphae were closely associated with host cell walls. Oxytropis sericea was innoculated with green fluorescent protein-transformed U. oxytropis and observed by confocal microscopy, confirming the presence of the endophyte hyphae in leaves and petioles. The fungus was identified only in the pith of petioles using fluorescence and in the vascular bundle throughout extracellular spaces in leaves. These results revealed no signs of a pathogenic interaction between plant and fungus and support the hypothesis of a mutualistic or commensal relationship.
C1 [Reyna, Roxanna; Cooke, Peter; Creamer, Rebecca] New Mexico State Univ, Dept Entomol Plant Pathol & Weed Sci, Las Cruces, NM 88003 USA.
[Grum, Daniel; Cook, Daniel] USDA, ARS, Poisonous Plant Res Lab, Logan, UT 84341 USA.
RP Creamer, R (reprint author), New Mexico State Univ, Dept Entomol Plant Pathol & Weed Sci, Las Cruces, NM 88003 USA.
EM creamer@nmsu.edu
FU Alliance for Minority Participation Bridge to the Doctoral program (BD
AMP); National Science Foundation [MRI DBI-0520956, MRI DBI-0959817];
New Mexico State University Agricultural Experiment Station
FX We thank the Alliance for Minority Participation Bridge to the Doctoral
program (BD AMP), National Science Foundation grants MRI DBI-0520956 and
MRI DBI-0959817, and the New Mexico State University Agricultural
Experiment Station for their financial support.
NR 51
TC 2
Z9 3
U1 0
U2 32
PU CANADIAN SCIENCE PUBLISHING, NRC RESEARCH PRESS
PI OTTAWA
PA 1200 MONTREAL ROAD, BUILDING M-55, OTTAWA, ON K1A 0R6, CANADA
SN 1916-2790
J9 BOTANY
JI Botany
PD DEC
PY 2012
VL 90
IS 12
BP 1229
EP 1236
DI 10.1139/b2012-092
PG 8
WC Plant Sciences
SC Plant Sciences
GA 054ZI
UT WOS:000312383800005
ER
PT J
AU Seidl, R
Spies, TA
Rammer, W
Steel, EA
Pabst, RJ
Olsen, K
AF Seidl, Rupert
Spies, Thomas A.
Rammer, Werner
Steel, E. Ashley
Pabst, Robert J.
Olsen, Keith
TI Multi-scale Drivers of Spatial Variation in Old-Growth Forest Carbon
Density Disentangled with Lidar and an Individual-Based Landscape Model
SO ECOSYSTEMS
LA English
DT Article
DE forest carbon storage; old-growth forests; climate change mitigation;
ecosystem structure and functioning; functional diversity; forest stand
dynamics; airborne Lidar; individual-based modeling; iLand
ID NET PRIMARY PRODUCTION; DOUGLAS-FIR FORESTS; STRUCTURAL COMPLEXITY;
PACIFIC-NORTHWEST; WESTERN OREGON; USE EFFICIENCY; CLIMATE-CHANGE;
ECOSYSTEM; PRODUCTIVITY; DIVERSITY
AB Forest ecosystems are the most important terrestrial carbon (C) storage globally, and presently mitigate anthropogenic climate change by acting as a large and persistent sink for atmospheric CO2. Yet, forest C density varies greatly in space, both globally and at stand and landscape levels. Understanding the multi-scale drivers of this variation is a prerequisite for robust and effective climate change mitigation in ecosystem management. Here, we used airborne light detection and ranging (Lidar) and a novel high-resolution simulation model of landscape dynamics (iLand) to identify the drivers of variation in C density for an old-growth forest landscape in Oregon, USA. With total ecosystem C in excess of 1 Gt ha(-1) these ecosystems are among the most C-rich globally. Our findings revealed considerable spatial variability in stand-level C density across the landscape. Notwithstanding the distinct environmental gradients in our mountainous study area only 55.3% of this variation was explained by environmental drivers, with radiation and soil physical properties having a stronger influence than temperature and precipitation. The remaining variation in C stocks was largely attributable to emerging properties of stand dynamics (that is, stand structure and composition). Not only were density- and size-related indicators positively associated with C stocks but also diversity in composition and structure, documenting a close link between biodiversity and ecosystem functioning. We conclude that the complexity of old-growth forests contributes to their sustained high C levels, a finding that is relevant to managing forests for climate change mitigation.
C1 [Seidl, Rupert; Pabst, Robert J.; Olsen, Keith] Oregon State Univ, Coll Forestry, Dept Forest Ecosyst & Soc, Corvallis, OR 97331 USA.
[Seidl, Rupert; Rammer, Werner] Univ Nat Resources & Life Sci BOKU, Dept Forest & Soil Sci, Inst Silviculture, Vienna, Austria.
[Spies, Thomas A.] US Forest Serv, USDA, Pacific NW Res Stn, Corvallis, OR USA.
[Steel, E. Ashley] US Forest Serv, USDA, Pacific NW Res Stn, Seattle, WA USA.
RP Seidl, R (reprint author), Oregon State Univ, Coll Forestry, Dept Forest Ecosyst & Soc, Corvallis, OR 97331 USA.
EM rupert.seidl@boku.ac.at
RI Seidl, Rupert/A-4858-2013;
OI Seidl, Rupert/0000-0002-3338-3402
FU European Community [237085]; National Science Foundation [DEB 08-23380]
FX This study was funded by a Marie Curie Fellowship awarded to R. Seidl
under the European Community's Seventh Framework Program (Grant
agreement 237085). We are grateful for the support from National Science
Foundation Grant DEB 08-23380, the USDA Forest Service, Pacific
Northwest Research Station, and from the H.J. Andrews community for
making available data for this study. We thank M. Liermann, NOAA's
Northwest Fisheries Science Center for statistical insight. We are
furthermore grateful to B. Bond, Oregon State University, and V. R.
Kane, University of Washington, as well as to two anonymous reviewers
for helpful comments on an earlier version of the manuscript.
NR 70
TC 16
Z9 19
U1 2
U2 70
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 1432-9840
EI 1435-0629
J9 ECOSYSTEMS
JI Ecosystems
PD DEC
PY 2012
VL 15
IS 8
BP 1321
EP 1335
DI 10.1007/s10021-012-9587-2
PG 15
WC Ecology
SC Environmental Sciences & Ecology
GA 051QY
UT WOS:000312143300009
ER
PT J
AU Racicot, K
Craven, A
Chen, CYO
AF Racicot, Kenneth
Craven, Andrew
Chen, C. -Y. Oliver
TI Bleaching augments lipid peroxidation products in pistachio oil and its
cytotoxicity
SO EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY
LA English
DT Article
DE Bleaching; Cell viability; Lipid peroxidation; Phytosterols; Pistachios
ID PHYTOSTEROL OXIDATION-PRODUCTS; BETA-SITOSTEROL OXIDES;
HYDROGEN-PEROXIDE; POTENTIAL MECHANISMS; MASS-SPECTROMETRY;
LDL-CHOLESTEROL; VEGETABLE-OILS; DOSE-RESPONSE; FATTY-ACIDS;
MALONDIALDEHYDE
AB Pistachio consumption is associated with reductions in serum cholesterol and oxidative stress due to their constituents of unsaturated fats, phytosterols, fiber, and antioxidants. Bleaching has been applied to whiten nut shells for antifungal and cosmetic purposes. However, the impact of bleaching on nutritional quality and safety of pistachios remains to be examined. In this study, we investigated whether bleaching would increase malondialdehyde (MDA) or 7-keto-sitosterol and decrease phytosterols in pistachio oil, as well as cause cytotoxicity of modeled Hepa1c1c7 cells. Bleaching increased MDA by more than 32% from 0.23 mu g/g in raw oil, with the largest increase noted with the bleach containing H2O2 and Fe2+ (P?=?0.05). Bleached pistachio oil had larger than 12.6% decrease in beta-sitosterol and total phytosterols as compared to the raw oil (P?=?0.05). Bleaching with Fe2+ significantly increase 7-keto-sitosterol compared to bleaching alone. Hepatic cell viability was decreased the most by the oil of the pistachios treated with bleach containing Fe2+ (P?=?0.05), and lactate dehydrogenase activity in medium was elevated by >18-folds (P?=?0.05). Compared to natural pistachios, the bleaching treatment had detrimental effects on nutritional quality and expected health benefits of pistachios by increasing lipid peroxidation, decreasing phytosterol content, and causing cytotoxicity.
C1 [Racicot, Kenneth; Chen, C. -Y. Oliver] Tufts Univ, Antioxidants Res Lab, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
RP Chen, CYO (reprint author), Tufts Univ, Antioxidants Res Lab, Jean Mayer USDA Human Nutr Res Ctr Aging, 711 Washington St, Boston, MA 02111 USA.
EM oliver.chen@tufts.edu
FU Paramount Farms Inc.; USDA ARS [58-1950-7-707]
FX K. Racicot, A. Craven, and C.-Y.O. Chen contributed to the design of the
study. K. Racicot and C.-Y.O. were involved in the generation,
collection, and analysis of data. All authors were responsible for
drafting the manuscript and approve the final version of the manuscript.
The study is funded by an unrestricted gift bestowed by Paramount Farms
Inc. This work is also funded through the USDA ARS Cooperative Agreement
#58-1950-7-707. The contents of this publication do not necessarily
reflect the views or policies of the USDA nor does mention of trade
names, commercial products, or organizations imply endorsement by the
U.S. government.
NR 45
TC 1
Z9 1
U1 1
U2 20
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1438-7697
J9 EUR J LIPID SCI TECH
JI Eur. J. Lipid Sci. Technol.
PD DEC
PY 2012
VL 114
IS 12
BP 1362
EP 1372
DI 10.1002/ejlt.201100403
PG 11
WC Food Science & Technology; Nutrition & Dietetics
SC Food Science & Technology; Nutrition & Dietetics
GA 053UB
UT WOS:000312298600009
ER
PT J
AU Isaak, DJ
Muhlfeld, CC
Todd, AS
Al-Chokhachy, R
Roberts, J
Kershner, JL
Fausch, KD
Hostetler, SW
AF Isaak, Daniel J.
Muhlfeld, Clint C.
Todd, Andrew S.
Al-Chokhachy, Robert
Roberts, James
Kershner, Jeffrey L.
Fausch, Kurt D.
Hostetler, Steven W.
TI The Past as Prelude to the Future for Understanding 21st-Century Climate
Effects on Rocky Mountain Trout
SO FISHERIES
LA English
DT Article
ID WESTSLOPE CUTTHROAT TROUT; ONCORHYNCHUS-CLARKII-LEWISI; NONNATIVE BROOK
TROUT; INTRODUCED RAINBOW-TROUT; CHARR SALVELINUS-ALPINUS; POTENTIAL
HABITAT LOSS; WESTERN UNITED-STATES; COLUMBIA RIVER-BASIN; BULL TROUT;
BROWN TROUT
AB Bioclimatic models predict large reductions in native trout across the Rocky Mountains in the 21st century but lack details about how changes will occur. Through five case histories across the region, we explore how a changing climate has been affecting streams and the potential consequences for trout. Monitoring records show trends in temperature and hydrographs consistent with a warming climate in recent decades. Biological implications include upstream shifts in thermal habitats, risk of egg scour, increased wildfire disturbances, and declining summer habitat volumes. The importance of these factors depends on the context, but temperature increases are most relevant where population boundaries are mediated by thermal constraints. Summer flow declines and wildfires will be important where trout populations are fragmented and constrained to small refugia. A critical information gap is evidence documenting how populations are adjusting to long-term habitat trends, so biological monitoring is a priority. Biological, temperature, and discharge data from monitoring networks could be used to develop accurate vulnerability assessments that provide information regarding where conservation actions would best improve population resilience. Even with better information, future uncertainties will remain large due to unknowns regarding Earth's ultimate warming trajectory and how effects translate across scales. Maintaining or increasing the size of habitats could provide a buffer against these uncertainties.
C1 [Isaak, Daniel J.] US Forest Serv, Rocky Mt Res Stn, Boise, ID 83702 USA.
[Muhlfeld, Clint C.] US Geol Survey, No Rocky Mt Sci Ctr, Glacier Field Off, W Glacier, MT 59936 USA.
[Muhlfeld, Clint C.] Univ Montana, Flathead Lake Biol Stn, Polson, MT 59860 USA.
[Todd, Andrew S.] US Geol Survey, Crustal Geophys & Geochem Sci Ctr, Denver, CO 80225 USA.
[Al-Chokhachy, Robert; Kershner, Jeffrey L.] US Geol Survey, No Rocky Mt Sci Ctr, Bozeman, MT 59717 USA.
[Roberts, James; Fausch, Kurt D.] Colorado State Univ, Dept Fish Wildlife & Conservat Biol, Ft Collins, CO 80523 USA.
[Hostetler, Steven W.] US Geol Survey, Corvallis, OR 97331 USA.
RP Isaak, DJ (reprint author), US Forest Serv, Rocky Mt Res Stn, 322 E Front St,Suite 401, Boise, ID 83702 USA.
EM disaak@fs.fed.us
RI Fausch, Kurt/A-8849-2010
FU U.S. Geological Survey, National Climate Change and Wildlife Science
Center; U.S. Geological Survey, Mendenhall Post-Doctoral Fellowship
Program; Wyoming Game and Fish Department; U.S. Forest Service, Rocky
Mountain Research Station; Washington Office of Research and Development
FX This work was supported by a grant from the U.S. Geological Survey,
National Climate Change and Wildlife Science Center. R. Al-Chokhachy was
supported by additional funding from the U.S. Geological Survey,
Mendenhall Post-Doctoral Fellowship Program. J. Roberts and K. Fausch
were supported by a grant from the Wyoming Game and Fish Department. D.
Isaak was supported by the U.S. Forest Service, Rocky Mountain Research
Station, and the Washington Office of Research and Development. J.
Alder, M. Zeigler, J. Giersch, and D. Horan helped with figure
preparations and data collection. The manuscript was improved by
comments from M. Young, P. Budy, and three anonymous reviewers. Use of
trade, product, or firm names is for descriptive purposes only and does
not imply endorsement by the U.S. Government. This research was
conducted in accordance with the Animal Welfare Act and its subsequent
amendments.
NR 125
TC 29
Z9 29
U1 2
U2 63
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 520 CHESTNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 0363-2415
EI 1548-8446
J9 FISHERIES
JI Fisheries
PD DEC
PY 2012
VL 37
IS 12
BP 542
EP 556
DI 10.1080/03632415.2012.742808
PG 15
WC Fisheries
SC Fisheries
GA 052JG
UT WOS:000312193300003
ER
PT J
AU Clark, TL
Frank, DL
French, BW
Meinke, LJ
Moellenbeck, D
Vaughn, TT
Hibbard, BE
AF Clark, T. L.
Frank, D. L.
French, B. W.
Meinke, L. J.
Moellenbeck, D.
Vaughn, T. T.
Hibbard, B. E.
TI Mortality impact of MON863 transgenic maize roots on western corn
rootworm larvae in the field
SO JOURNAL OF APPLIED ENTOMOLOGY
LA English
DT Article
DE Bacillus thuringiensis; Bt; Cry3Bb1; Diabrotica virgifera virgifera;
insect resistance management
ID VIRGIFERA COLEOPTERA-CHRYSOMELIDAE; RESISTANCE; SELECTION; PROTEINS;
SURVIVAL; ADAPTATION; MIR604; PEST
AB Mortality of western corn rootworm (Diabrotica virgifera virgifera LeConte) due to feeding on MON863 transgenic maize (Zea mays L.) expressing the Cry3Bb1 protein was evaluated at three Missouri sites in both 2003 and 2004 and at one site each in South Dakota, Nebraska and Iowa in 2004. To do this, survivorship relative to survivorship on isoline maize (i.e. the same genetic background, but without Cry3Bb1) was evaluated. Comparisons were made using low (16502500 eggs/m) and high (33003500 eggs/m) western corn rootworm egg densities. Significantly fewer beetles were recovered from MON863 than from isoline maize. Emergence from MON863 as a percentage of viable eggs ranged from 0.02% to 0.10%, whereas percentage emergence from isoline maize ranged from 1.09% to 7.14%. Survivorship on MON863 relative to survivorship on isoline averaged 1.51% when averaged across all environments and both years, so mortality because of the Cry3Bb1 protein averaged 98.49%. The average time delay to 50% cumulative beetle emergence from MON863 was 18.3 days later than from isoline maize. Females comprised 56% and 71% of total beetles recovered from MON863 in 2003 and 2004, respectively. Results are discussed in relation to insect resistance management (IRM) of western corn rootworm.
C1 [Hibbard, B. E.] Univ Missouri, Div Plant Sci, USDA ARS, Plant Genet Res Unit, Columbia, MO 65211 USA.
[Clark, T. L.; Vaughn, T. T.] Monsanto Co, Chesterfield, MO USA.
[French, B. W.] USDA ARS, Integrated Cropping Syst Res Unit, Brookings, SD USA.
[Meinke, L. J.] Univ Nebraska, Dept Entomol, Lincoln, NE 68583 USA.
[Moellenbeck, D.] DM Crop Res Grp Inc, Polk City, IA USA.
RP Hibbard, BE (reprint author), Univ Missouri, Div Plant Sci, USDA ARS, Plant Genet Res Unit, 205 Curtis Hall, Columbia, MO 65211 USA.
EM bruce.hibbard@ars.usda.gov
FU Monsanto Company
FX We thank Matt Higdon (USDA-ARS), Arnulfo (Tony) Antonio (USDA-ARS), Dave
Beck (USDA-ARS), Jim Brown (University of Nebraska), Bill McCormick
(University of Nebraska) and a number of temporary summer labourers for
assistance in setting up the trials and counting and sexing beetles.
Funding for this work was provided by Monsanto Company.
NR 35
TC 20
Z9 20
U1 1
U2 30
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0931-2048
J9 J APPL ENTOMOL
JI J. Appl. Entomol.
PD DEC
PY 2012
VL 136
IS 10
BP 721
EP 729
DI 10.1111/j.1439-0418.2012.01709.x
PG 9
WC Entomology
SC Entomology
GA 052RK
UT WOS:000312215800001
ER
PT J
AU Oswald, KJ
French, BW
Nielson, C
Bagley, M
AF Oswald, K. J.
French, B. W.
Nielson, C.
Bagley, M.
TI Assessment of fitness costs in Cry3Bb1-resistant and susceptible western
corn rootworm (Coleoptera: Chrysomelidae) laboratory colonies
SO JOURNAL OF APPLIED ENTOMOLOGY
LA English
DT Article
DE Bacillus thuringiensis resistance; fitness costs; MON863; western corn
rootworm
ID HELICOVERPA-ARMIGERA LEPIDOPTERA; INSECT RESISTANCE MANAGEMENT;
VIRGIFERA-VIRGIFERA COLEOPTERA; PINK-BOLLWORM LEPIDOPTERA; BT TRANSGENIC
CROPS; TIME-STEP MODEL; BACILLUS-THURINGIENSIS; HOST-PLANT;
PLUTELLA-XYLOSTELLA; CRY2AB RESISTANCE
AB Maize production in the United States is dominated by plants genetically modified with transgenes from Bacillus thuringiensis (Bt). Cry3Bb delta endotoxins expressed by Bt maize specifically target corn rootworms (genus Diabrotica) and have proven highly efficacious. However, development of resistance to Bt maize, especially among western corn rootworm (Diabrotica virgifera virgifera) populations, poses a significant threat to the future viability of this pest control biotechnology. The structured refuge insect resistance management (IRM) strategy implemented in the United States for Bt maize adopts a conservative approach to managing resistance by assuming no fitness costs of Bt resistance, even though these trade-offs strongly influence the dynamics of Bt resistance within numerous agricultural pest species. To investigate the effects of Bt resistance on fitness components of western corn rootworm, we compared survivorship, fecundity and viability of five Bt-resistant laboratory lines reared on MON863 (YieldGard Rootworm), a Bt maize product that expresses Cry3Bb1 delta endotoxin, and on its non-transgenic isoline. Analysis of performance on the isoline maize demonstrated no fitness costs associated with Bt resistance. In fact, resistant lines emerged approximately 23 days earlier than control lines when reared on both MON863 and the isoline, indicating that selection for Bt resistance resulted in a general increase in the rate of larval development. In addition, resistant lines reared on Bt maize displayed higher fecundity than those reared on the isoline, which may have significant management implications. These data will be valuable for formulating improved IRM strategies for a principal agricultural pest of maize.
C1 [Oswald, K. J.; Bagley, M.] US EPA, Off Res & Dev, Natl Exposure Res Lab, Ecol Exposure Res Div, Cincinnati, OH 45268 USA.
[French, B. W.; Nielson, C.] ARS, USDA, N Cent Agr Res Lab, Brookings, SD USA.
RP Oswald, KJ (reprint author), US EPA, Off Res & Dev, Natl Exposure Res Lab, Ecol Exposure Res Div, MS 590,26 W Martin Luther King Dr, Cincinnati, OH 45268 USA.
EM oswald.kenneth@epa.gov
NR 74
TC 18
Z9 19
U1 1
U2 58
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0931-2048
J9 J APPL ENTOMOL
JI J. Appl. Entomol.
PD DEC
PY 2012
VL 136
IS 10
BP 730
EP 740
DI 10.1111/j.1439-0418.2012.01704.x
PG 11
WC Entomology
SC Entomology
GA 052RK
UT WOS:000312215800002
ER
PT J
AU Coy, MR
Sanscrainte, ND
Chalaire, KC
Inberg, A
Maayan, I
Glick, E
Paldi, N
Becnel, JJ
AF Coy, M. R.
Sanscrainte, N. D.
Chalaire, K. C.
Inberg, A.
Maayan, I.
Glick, E.
Paldi, N.
Becnel, J. J.
TI Gene silencing in adult Aedes aegypti mosquitoes through oral delivery
of double-stranded RNA
SO JOURNAL OF APPLIED ENTOMOLOGY
LA English
DT Article
DE mosquito; RNAi; v-ATPase; vector control
ID ANOPHELES-GAMBIAE; INSECTICIDE RESISTANCE; DSRNA INGESTION; VECTOR
CONTROL; INTERFERENCE; MALARIA; LARVAL; POPULATIONS; KNOCKDOWN;
ALIGNMENT
AB The induction of the naturally occurring phenomenon of RNA interference (RNAi) to study gene function in insects is now common practice. With appropriately chosen targets, the RNAi pathway has also been exploited for insect control, typically through oral delivery of dsRNA. Adapting current methods to deliver foreign compounds, such as amino acids and pesticides, to mosquitoes through sucrose solutions, we tested whether such an approach could be used in the yellow fever mosquito, Aedes aegypti. Using a non-specific dsRNA construct, we found that adult Ae. aegypti ingested dsRNA through this method and that the ingested dsRNA can be recovered from the mosquitoes post-feeding. Through the feeding of a species-specific dsRNA construct against vacuolar ATPase, subunit A, we found that significant gene knockdown could be achieved at 12, 24 and 48 h post-feeding.
C1 [Coy, M. R.; Sanscrainte, N. D.; Chalaire, K. C.; Becnel, J. J.] USDA ARS, Mosquito & Fly Res Unit, Gainesville, FL 32608 USA.
[Inberg, A.; Maayan, I.; Glick, E.; Paldi, N.] Beeologics Inc, Miami, FL USA.
RP Coy, MR (reprint author), USDA ARS, Mosquito & Fly Res Unit, 1600 SW 23rd Dr, Gainesville, FL 32608 USA.
EM monique.r.coy@gmail.com
FU Deployed War-Fighter Protection Research Program; U.S. Department of
Defense through the Armed Forces Pest Management Board (AFPMB)
FX We thank Dr. J. Pridgeon for helpful input, comments and suggestions,
and Drs. S. Valles and J. Pridgeon for critical review of the
manuscript. The use of trade, firm or corporation names in this
publication are for the information and convenience of the reader and do
not constitute an official endorsement or approval by the United States
Department of Agriculture or Agricultural Research Service of any
product or service to the exclusion of others that may be suitable.
Funding for this work was provided by the Deployed War-Fighter
Protection Research Program funded by the U.S. Department of Defense
through the Armed Forces Pest Management Board (AFPMB).
NR 50
TC 18
Z9 19
U1 6
U2 52
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0931-2048
J9 J APPL ENTOMOL
JI J. Appl. Entomol.
PD DEC
PY 2012
VL 136
IS 10
BP 741
EP 748
DI 10.1111/j.1439-0418.2012.01713.x
PG 8
WC Entomology
SC Entomology
GA 052RK
UT WOS:000312215800003
ER
PT J
AU Sever, S
Weinstein, DA
Wolfsdorf, JI
Gedik, R
Schaefer, EJ
AF Sever, Sakine
Weinstein, David A.
Wolfsdorf, Joseph I.
Gedik, Reyhan
Schaefer, Ernst J.
TI Glycogen storage disease type Ia: Linkage of glucose, glycogen, lactic
acid, triglyceride, and uric acid metabolism
SO JOURNAL OF CLINICAL LIPIDOLOGY
LA English
DT Editorial Material
DE Glycogen storage disease type Ia; High-density lipoproteins (HDL);
Low-density lipoproteins (LDL); Small dense LDL (sdLDL)
ID CORONARY-HEART-DISEASE; HEPCIDIN; ANEMIA; HYPERLIPIDEMIA; PARTICIPANTS;
CHOLESTEROL; DEFICIENCY
AB A female presented in infancy with hypotonia, undetectable serum glucose, lactic acidosis, and triglycerides >5000 mg/dL. The diagnosis of type 1A glycogen storage disease was made via the result of a liver biopsy, which showed increased glycogen and absent glucose-6-phosphatase enzyme activity. The patient was treated with dextrose administered orally, which was replaced by frequent feedings of cornstarch, which resulted in an improvement of her metabolic parameters. At age 18 years of age, she had marked hypertriglyceridemia (3860 mg/dL) and eruptive xanthomas and was treated with fenofibrate, atorvastatin, and fish oil. At age 29 years she was noted to have multiple liver adenomas, severe anemia, and hyperuricemia. Aggressive cornstarch therapy was commenced with a goal of maintaining her blood glucose levels >75 mg/dL and lactate levels <2 mmol/L. After 15 months on this regimen, her lipids levels (measured in mg/dL) off all medications were as follows: total cholesterol 222, triglycerides 179, high-density lipoprotein cholesterol 32, and calculated low-density lipoprotein cholesterol 154. Her weight was stable with a body mass index of 24.8 kg/m(2). Her liver adenomas had decreased in size, and her anemia and hyperuricemia had improved. She was homozygous for the R83C missense mutation in G6PC. Our data indicate that optimized metabolic control to maintain blood glucose levels >75 mg/dL is critical in the management of this disease. (C) 2012 Published by Elsevier Inc. on behalf of National Lipid Association.
C1 [Sever, Sakine; Gedik, Reyhan; Schaefer, Ernst J.] Tufts Univ, Cardiovasc Res Clin, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Sever, Sakine; Gedik, Reyhan; Schaefer, Ernst J.] Tufts Univ, Sch Med, Boston, MA 02111 USA.
[Sever, Sakine; Gedik, Reyhan; Schaefer, Ernst J.] Tufts Univ, Lipid Metab Lab, Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Weinstein, David A.] Univ Florida, Dept Pediat, Glycogen Storage Dis Program, Div Pediat Endocrinol, Gainesville, FL USA.
[Wolfsdorf, Joseph I.] Harvard Univ, Sch Med, Boston Childrens Hosp, Boston, MA USA.
[Schaefer, Ernst J.] Boston Heart Diagnost, Framingham, MA USA.
RP Schaefer, EJ (reprint author), Tufts Univ, Cardiovasc Res Clin, Human Nutr Res Ctr Aging, 711 Washington St, Boston, MA 02111 USA.
EM ernst.schaefer@tufts.edu
FU NCATS NIH HHS [UL1 TR000064]; NCRR NIH HHS [K1UL1RR029890, UL1
RR029890]; NHLBI NIH HHS [P50 HL083813, P50 HL083813-01]
NR 17
TC 3
Z9 4
U1 1
U2 15
PU ELSEVIER SCIENCE INC
PI NEW YORK
PA 360 PARK AVE SOUTH, NEW YORK, NY 10010-1710 USA
SN 1933-2874
J9 J CLIN LIPIDOL
JI J. Clin. Lipidol.
PD DEC
PY 2012
VL 6
IS 6
BP 596
EP 600
DI 10.1016/j.jacl.2012.08.005
PG 5
WC Pharmacology & Pharmacy
SC Pharmacology & Pharmacy
GA 056HF
UT WOS:000312478300012
PM 23312056
ER
PT J
AU Yang, Y
Luo, YG
Millner, P
Shelton, D
Nou, XW
AF Yang, Yang
Luo, Yaguang
Millner, Patricia
Shelton, Daniel
Nou, Xiangwu
TI Enhanced Chlorine Efficacy against Bacterial Pathogens in Wash Solution
with High Organic Loads
SO JOURNAL OF FOOD PROCESSING AND PRESERVATION
LA English
DT Article
ID FRESH-CUT LETTUCE; CROSS-CONTAMINATION; PRODUCE WASH; COLI O157/H7;
SANITIZERS; SALMONELLA
AB Chlorine is widely used as a sanitizer in commercial fresh-cut produce wash operations. However, chlorine reacts rapidly with organic materials, leading to potential pathogen survival when chlorine concentration nears depletion. This study evaluated a new process aid, T128, for its capacity to enhance chlorine efficacy against Escherichia coli O157:H7 in solutions with high organic loads. Chlorine solutions were prepared with either T128 or citric acid (control) to adjust pH. Survival of E.?coli O157:H7 was assayed during washing of increasing amounts of shredded lettuce, or addition of lettuce juice as organic load. The application of T128 significantly reduced survival of E.?coli O157:H7 when free chlorine in solution decreased to levels approaching depletion. In the presence of T128, no pathogen survival was observed with the free chlorine concentration as low as 0.05?mg/L, while 0.4?mg/L free chlorine was required to kill pathogens in the absence of T128 in the wash solution. Practical Applications The foodborne illness outbreaks that plague the fresh-cut produce industry are a testament to the need for a more effective sanitizer to prevent pathogen survival and cross contamination in commercial produce wash systems with large influxes of organic matter. This paper reports the investigation of the effect of a new process aid, T128, on reducing the survival of E.?coli O157:H7 in wash solutions in which chlorine is near depletion due to high organic load, and thus the potential to improve the safety margin of fresh-cut process control.
C1 [Yang, Yang; Luo, Yaguang; Millner, Patricia; Shelton, Daniel; Nou, Xiangwu] ARS, USDA, Environm Microbial & Food Safety Lab, Beltsville, MD 20705 USA.
RP Luo, YG (reprint author), ARS, USDA, Environm Microbial & Food Safety Lab, 10300 Baltimore Ave,Bldg 002, Beltsville, MD 20705 USA.
EM Yaguang.Luo@ars.usda.gov
FU Center for Produce Safety (CPS), University of California, Davis, CA
[2009-74]
FX We gratefully acknowledge James Brennan of New Leaf Food Safety
Solutions LLC and Taylor Farms Inc. for providing the washing aid T128.
This study is partially supported by grant #2009-74 from Center for
Produce Safety (CPS), University of California, Davis, CA.
NR 22
TC 3
Z9 3
U1 2
U2 26
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0145-8892
J9 J FOOD PROCESS PRES
JI J. Food Process Preserv.
PD DEC
PY 2012
VL 36
IS 6
BP 560
EP 566
DI 10.1111/jfpp.12000
PG 7
WC Food Science & Technology
SC Food Science & Technology
GA 051VK
UT WOS:000312155700012
ER
PT J
AU Schmidt, JW
Arthur, TM
Bosilevac, JM
Kalchayanand, N
Wheeler, TL
AF Schmidt, John W.
Arthur, Terrance M.
Bosilevac, Joseph M.
Kalchayanand, Norasak
Wheeler, Tommy L.
TI Detection of Escherichia coli O157:H7 and Salmonella enterica in Air and
Droplets at Three U.S. Commercial Beef Processing Plants
SO JOURNAL OF FOOD PROTECTION
LA English
DT Article
ID CARCASS CONTAMINATION; UNITED-STATES; IMMUNOMAGNETIC SEPARATION;
GROUND-BEEF; O157-H7; CATTLE; PREVALENCE; HIDES; ABATTOIRS; BACTERIA
AB Bacteria are known to be present in the air at beef processing plants, but published data regarding the prevalences of airborne Escherichia coli O157:H7 and Salmonella enterica are very limited. To determine if airborne pathogens were present in beef processing facilities, we placed sedimentation sponges at various locations in three commercial beef plants that processed cattle from slaughter through fabrication. For the 291 slaughter area air samples, E. coli O157:H7 was isolated from 15.8% and S. enterica from 16.5%. Of the 113 evisceration area air samples, E. coli O157:H7 was isolated from only one sample and S. enterica was not isolated from any sample. Pathogens were not isolated from any of the 87 air samples from fabrication areas. Pathogen prevalences, aerobic plate counts, and Enterobacteriaceae counts were highest for air samples obtained from locations near hide removal operations. The process of hide removal disperses liquid droplets, which may contact neighboring carcasses. Samples were obtained both from hide removal locations that were close enough to hide pullers to be contacted by droplets and from locations that were not contacted by droplets. Higher pathogen prevalences, aerobic plate counts, and Enterobacteriaceae counts were observed at locations with samples contacted by the hide removal droplets. We conclude that the hide removal processes likely introduce pathogens into the air via a dispersion of liquid droplets and that these droplets may be an underappreciated source of hide-to-carcass contamination.
C1 [Schmidt, John W.; Arthur, Terrance M.; Bosilevac, Joseph M.; Kalchayanand, Norasak; Wheeler, Tommy L.] ARS, USDA, Roman L Hruska US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
RP Schmidt, JW (reprint author), ARS, USDA, Roman L Hruska US Meat Anim Res Ctr, Clay Ctr, NE 68933 USA.
EM john.w.schmidt@ars.usda.gov
OI Schmidt, John/0000-0003-0494-2436
NR 22
TC 7
Z9 7
U1 0
U2 16
PU INT ASSOC FOOD PROTECTION
PI DES MOINES
PA 6200 AURORA AVE SUITE 200W, DES MOINES, IA 50322-2863 USA
SN 0362-028X
J9 J FOOD PROTECT
JI J. Food Prot.
PD DEC
PY 2012
VL 75
IS 12
BP 2213
EP 2218
DI 10.4315/0362-028X.JFP-12-206
PG 6
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA 054PN
UT WOS:000312355800015
PM 23212019
ER
PT J
AU Li, WL
Liu, LS
Jin, TZ
AF Li, Weili
Liu, Linshu
Jin, Tony Z.
TI Antimicrobial Activity of Allyl Isothiocyanate Used To Coat
Biodegradable Composite Films as Affected by Storage and Handling
Conditions
SO JOURNAL OF FOOD PROTECTION
LA English
DT Article
ID LISTERIA-MONOCYTOGENES; NISIN; PECTIN
AB We evaluated the effects of storage and handling conditions on the antimicrobial activity of biodegradable composite films (polylactic acid and sugar beet pulp) coated with allyl isothiocyanate (AIT). Polylactic acid and chitosan were incorporated with AIT and used to coat one side of the film. The films were subjected to different storage conditions (storage time, storage temperature, and packed or unpacked) and handling conditions (washing. abrasion, and air blowing), and the antimicrobial activity of the films against Salmonella Stanley in tryptic soy broth was determined. The films (8.16 mu l of ALT per cm(2) of surface area) significantly (P<0.05) inhibited the growth of Salmonella during 24 h of incubation at 22 degrees C, while the populations of Salmonella in controls increased from ca. 4 to over 8 log CFU/ml, indicating a minimum inactivation of 4 log CFU/ml on films in comparison to the growth on controls. Statistical analyses indicated that storage time, storage temperature, and surface abrasion affected the antimicrobial activity of the films significantly (P<0.05). However, the differences in microbial reduction between those conditions were less than 0.5 log cycle. The results suggest that the films' antimicrobial properties are stable under practical storage and handling conditions and that these antimicrobial films have potential applications in food packaging.
C1 [Li, Weili; Liu, Linshu; Jin, Tony Z.] ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
[Li, Weili] Tianjin Univ Sci & Technol, Minist Educ, Key Lab Food Nutr & Safety, Tianjin 300457, Peoples R China.
RP Jin, TZ (reprint author), ARS, USDA, Eastern Reg Res Ctr, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM tony.jin@ars.usda.gov
OI Jin, Tony/0000-0003-0504-5817
NR 13
TC 4
Z9 4
U1 0
U2 19
PU INT ASSOC FOOD PROTECTION
PI DES MOINES
PA 6200 AURORA AVE SUITE 200W, DES MOINES, IA 50322-2863 USA
SN 0362-028X
EI 1944-9097
J9 J FOOD PROTECT
JI J. Food Prot.
PD DEC
PY 2012
VL 75
IS 12
BP 2234
EP 2237
DI 10.4315/0362-028X.JFP-12-234
PG 4
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA 054PN
UT WOS:000312355800019
PM 23212023
ER
PT J
AU Smith, JL
Fratamico, PM
AF Smith, James L.
Fratamico, Pina M.
TI Effect of Stress on Non-O157 Shiga Toxin-Producing Escherichia coli
SO JOURNAL OF FOOD PROTECTION
LA English
DT Review
ID ACID RESISTANCE; UNITED-STATES; SALMONELLA-TYPHIMURIUM; FOODBORNE
ILLNESS; SURVIVAL; O157-H7; O157/H7; STRAINS; BEEF; O26
AB Non-O157 Shiga toxin producing Escherichia coli (non-O157 STEC) strains have emerged as important foodborne pathogens worldwide. Non-O157 STEC serogroups O26, O45, O103, O111, O121, and O145 have been declared as adulterants in beef by the U.S. Department of Agriculture Food Safety and Inspection Service. While documentation is limited, treatments including heat and acid that have been shown to inactivate E. cell O157:117 will likely also destroy non-O157 STEC: however, non-O157 STEC strains show variability in their responses to stress. It has been shown that non-O157 STEC may survive in fermented sausages and cheeses, and treatments such as high pressure may be necessary to eliminate non-O157 STEC from these products. The mechanisms used by non-O157 STEC to resist acid environments are similar to those used by O157:H7 strains and include the acid tolerance response, the oxidative system, and the glutamate and arginine decarboxylase systems. However, one study demonstrated that some non-O157 STEC strains utilize a chaperone-based acid stress response (HdeA and HdeB) to combat acidic conditions, which is lacking in E. coli O157:H7. Genomic studies suggest that while non-O157 STEC can cause diseases similar to those caused by E. call O157:H7, O157 and non-O157 STECs have different evolutionary histories. Non-O157 STECs are a heterogeneous group of organisms, and there is currently a limited amount of information on their virulence, fitness, and stress responses, rendering it difficult to draw firm conclusions on their behavior when exposed to stress in the environment, in food, and during processing.
C1 [Smith, James L.; Fratamico, Pina M.] ARS, USDA, Eastern Reg Res Ctr, Wyndmoor, PA 19038 USA.
RP Smith, JL (reprint author), ARS, USDA, Eastern Reg Res Ctr, 600 E Mermaid Lane, Wyndmoor, PA 19038 USA.
EM james.smith@ars.usda.gov
NR 57
TC 12
Z9 12
U1 5
U2 48
PU INT ASSOC FOOD PROTECTION
PI DES MOINES
PA 6200 AURORA AVE SUITE 200W, DES MOINES, IA 50322-2863 USA
SN 0362-028X
EI 1944-9097
J9 J FOOD PROTECT
JI J. Food Prot.
PD DEC
PY 2012
VL 75
IS 12
BP 2241
EP 2250
DI 10.4315/0362-028X.JFP-12-255
PG 10
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA 054PN
UT WOS:000312355800021
PM 23212025
ER
PT J
AU Harris, LJ
Bender, J
Bihn, EA
Blessington, T
Danyluk, MD
Delaquis, P
Goodridge, L
Ibekwe, AM
Ilic, S
Kniel, K
LeJeune, JT
Schaffner, DW
Stoeckel, D
Suslow, TV
AF Harris, Linda J.
Bender, Jeff
Bihn, Elizabeth A.
Blessington, Tyann
Danyluk, Michelle D.
Delaquis, Pascal
Goodridge, Lawrence
Ibekwe, A. Mark
Ilic, Sanja
Kniel, Kali
LeJeune, Jeffrey T.
Schaffner, Donald W.
Stoeckel, Don
Suslow, Trevor V.
TI A Framework for Developing Research Protocols for Evaluation of
Microbial Hazards and Controls during Production That Pertain to the
Quality of Agricultural Water Contacting Fresh Produce That May Be
Consumed Raw
SO JOURNAL OF FOOD PROTECTION
LA English
DT Article
ID ESCHERICHIA-COLI O157-H7; CONTAMINATED MANURE COMPOSTS; ENTERICA SEROVAR
TYPHIMURIUM; SALMONELLA-ENTERICA; IRRIGATION WATER; MURINE NOROVIRUS;
LISTERIA-MONOCYTOGENES; LOGNORMAL-DISTRIBUTION; BACTERIAL-POPULATIONS;
FELINE CALICIVIRUS
AB Agricultural water may contact fresh produce during irrigation and/or when crop protection sprays (e.g., cooling to prevent sunburn, frost protection, and agrochemical mixtures) are applied. This document provides a framework for designing research studies that would add to our understanding of preharvest microbial food safety hazards and control measures pertaining to agricultural water. Researchers will be able to use this document to design studies. to anticipate the scope and detail of data required, and to evaluate previously published work. This document should also he useful for evaluating the strength of existing data and thus should aid in identifying future research needs. Use of this document by the research community may lead to greater consistency or comparability than currently exists among research studies, which may ultimately facilitate direct comparison of hazards and efficacy of controls among different commodities, conditions, and practices.
C1 [Harris, Linda J.; Blessington, Tyann] Univ Calif Davis, Western Ctr Food Safety, Davis, CA 95616 USA.
[Suslow, Trevor V.] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA.
[Bender, Jeff] Univ Minnesota, St Paul, MN 55108 USA.
[Bihn, Elizabeth A.] Cornell Univ, Dept Food Sci, Geneva, NY 14456 USA.
[Danyluk, Michelle D.] Univ Florida, Ctr Citrus Res & Educ, Dept Food Sci & Human Nutr, Lake Alfred, FL 33850 USA.
[Delaquis, Pascal] Agr & Agri Food Canada, Summerland, BC V0H 1Z0, Canada.
[Goodridge, Lawrence] Colorado State Univ, Dept Anim Sci, Ft Collins, CO 80523 USA.
[Ibekwe, A. Mark] ARS, USDA, Salin Lab, Riverside, CA 92507 USA.
[Ilic, Sanja; LeJeune, Jeffrey T.] Ohio State Univ, Food Anim Hlth Res Program, Wooster, OH 44691 USA.
[Kniel, Kali] Univ Delaware, Dept Anim & Food Sci, Newark, DE 19716 USA.
[Schaffner, Donald W.] Rutgers State Univ, New Brunswick, NJ 08901 USA.
[Stoeckel, Don] Battelle Mem Inst, Columbus, OH 43201 USA.
RP Harris, LJ (reprint author), Univ Calif Davis, Western Ctr Food Safety, 1 Shields Ave, Davis, CA 95616 USA.
EM ljharris@ucdavis.edu
RI Ilic, Sanja/B-4136-2010; Harris, Linda/B-5030-2011;
OI Ilic, Sanja/0000-0003-3450-2693; Harris, Linda/0000-0002-1911-752X;
Stoeckel, Don/0000-0003-3772-171X
FU FDA [U01-003-572]; Oak Ridge Institute for Science and Education, Center
for Food Safety and Applied Nutrition, FDA
FX The development of this document was supported by the FDA (project
U01-003-572). T. Blessington was supported by a fellowship from the Oak
Ridge Institute for Science and Education, Center for Food Safety and
Applied Nutrition, FDA. We are thankful for the review, comments, and
suggestions on the draft document from the following individuals: Renee
Boyer (Virginia Tech), Robert L. Buchanan (University of Maryland), J.
Peter Chaires (Florida Citrus Packers), Hank Giclas (Western Growers
Association), David Gombas (United Fresh Produce Association), Steve
Koike (University of California, Monterey County Cooperative Extension),
Robert F. Mandrell (U.S. Department of Agriculture, Agricultural
Research Service), Saul Moralez (Sysco Corporation), Anne-laure Moyne
(University of California, Davis), Keith Refsnider (Driscoll's), Bill
Pool (Wegmans Food Markets), Robert Whitaker (Produce Marketing
Association), Mike Willett (Northwest Horticultural Council), and Brian
Zomorodi (Ready Par Foods Inc.). We are also grateful or the editorial
assistance of Sylvia Yada.
NR 84
TC 12
Z9 12
U1 2
U2 49
PU INT ASSOC FOOD PROTECTION
PI DES MOINES
PA 6200 AURORA AVE SUITE 200W, DES MOINES, IA 50322-2863 USA
SN 0362-028X
J9 J FOOD PROTECT
JI J. Food Prot.
PD DEC
PY 2012
VL 75
IS 12
BP 2251
EP 2273
DI 10.4315/0362-028X.JFP-12-252
PG 23
WC Biotechnology & Applied Microbiology; Food Science & Technology
SC Biotechnology & Applied Microbiology; Food Science & Technology
GA 054PN
UT WOS:000312355800022
PM 23212026
ER
PT J
AU Varshney, RK
Ribaut, JM
Buckler, ES
Tuberosa, R
Rafalski, JA
Langridge, P
AF Varshney, Rajeev K.
Ribaut, Jean-Marcel
Buckler, Edward S.
Tuberosa, Roberto
Rafalski, J. Antoni
Langridge, Peter
TI Can genomics boost productivity of orphan crops?
SO NATURE BIOTECHNOLOGY
LA English
DT Letter
ID ASSOCIATION MAPPING POPULATION; MIXED-MODEL APPROACH; WIDE ASSOCIATION;
STRUCTURED POPULATIONS; GENETIC ARCHITECTURE; COMPLEX TRAITS; MAIZE;
SELECTION; IMPROVEMENT; OPPORTUNITIES
C1 [Varshney, Rajeev K.] Int Crops Res Inst Semi Arid Trop, CEG, Hyderabad, Andhra Pradesh, India.
[Varshney, Rajeev K.; Ribaut, Jean-Marcel] Int Maize & Wheat Improvement Ctr CIMMYT, CGIAR Generat Challenge Programme GCP, Mexico City, DF, Mexico.
[Varshney, Rajeev K.] UWA, Sch Plant Biol M084, Fac Nat & Agr Sci, Crawley, WA, Australia.
[Buckler, Edward S.] ARS, USDA, Ithaca, NY USA.
[Buckler, Edward S.] Cornell Univ, Dept Plant Breeding & Genet, Ithaca, NY USA.
[Tuberosa, Roberto] Univ Bologna, Dept Agroenvironm Sci & Technol, Bologna, Italy.
[Rafalski, J. Antoni] DuPont Pioneer, Wilmington, DE USA.
[Langridge, Peter] Univ Adelaide, ACPFG, Adelaide, SA, Australia.
RP Varshney, RK (reprint author), Int Crops Res Inst Semi Arid Trop, CEG, Hyderabad, Andhra Pradesh, India.
EM r.k.varshney@cgiar.org
RI Varshney, Rajeev/C-5295-2014; Langridge, Peter/G-5864-2010; Tuberosa,
Roberto/A-2781-2016;
OI Varshney, Rajeev/0000-0002-4562-9131; Langridge,
Peter/0000-0001-9494-400X; Tuberosa, Roberto/0000-0001-9143-9569;
Buckler, Edward/0000-0002-3100-371X
NR 40
TC 50
Z9 51
U1 4
U2 58
PU NATURE PUBLISHING GROUP
PI NEW YORK
PA 75 VARICK ST, 9TH FLR, NEW YORK, NY 10013-1917 USA
SN 1087-0156
J9 NAT BIOTECHNOL
JI Nat. Biotechnol.
PD DEC
PY 2012
VL 30
IS 12
BP 1172
EP 1176
DI 10.1038/nbt.2440
PG 6
WC Biotechnology & Applied Microbiology
SC Biotechnology & Applied Microbiology
GA 050ZA
UT WOS:000312092400014
PM 23222781
ER
PT J
AU Thompson, FR
Robbins, MB
Fitzgerald, JA
AF Thompson, Frank R., III
Robbins, Mark B.
Fitzgerald, Jane A.
TI LANDSCAPE-LEVEL FOREST COVER IS A PREDICTOR OF CERULEAN WARBLER
ABUNDANCE
SO WILSON JOURNAL OF ORNITHOLOGY
LA English
DT Article
ID NEST-SITE SELECTION; HABITAT CHARACTERISTICS; REPRODUCTIVE SUCCESS;
DENDROICA-CERULEA; CANOPY SONGBIRDS; FRAGMENTATION; MICROHABITAT;
COMMUNITY; ONTARIO; BIRDS
AB We examined support for the hypothesis that abundance of Cerulean Warblers (Setophaga cerulea) increases with percentage of bottomland and upland forest, and decreases with percentage of developed land at a local-habitat scale (within a 250-m buffer) and increases with percentage of all forest at a landscape scale (within a 10-km buffer). We conducted surveys along 16 rivers in Missouri and Arkansas from 1999 to 2006 and related habitat and landscape factors to counts of Cerulean Warblers in 123 5-km segments on these rivers. We detected 576 singing male Cerulean Warblers and found support for both local and landscape effects on Cerulean Warbler abundance. Model fit was good with an average correlation of 0.841 between predicted and observed values based on an eight-fold cross-validation procedure. The abundance of Cerulean Warblers increased 390.7. 8.7, and 4.1 times across the observed range of forest within 10 km, bottomland forest within 250 m, and upland forest within 250 m, respectively. Conservation and research need to address large-scale forest patterns in addition to local habitat for Cerulean Warblers. Further research is needed on abundance patterns across riparian and upland forests and demographic rates in this part of their range. Received 17 April 2012. Accepted 19 June 2012.
C1 [Thompson, Frank R., III] Univ Missouri, USDA, Forest Serv, No Res Stn, Columbia, MO 65211 USA.
[Robbins, Mark B.] Univ Kansas, Nat Hist Museum, Lawrence, KS 66045 USA.
[Robbins, Mark B.] Biodivers Res Center, Lawrence, KS 66045 USA.
[Fitzgerald, Jane A.] Amer Bird Conservancy, Reeds Spring, MO 65737 USA.
RP Thompson, FR (reprint author), Univ Missouri, USDA, Forest Serv, No Res Stn, 202 Anheuser Busch Nat Resources Bldg, Columbia, MO 65211 USA.
EM frthompson@fs.fed.us
FU Missouri Department of Conservation
FX We thank W. Andrew Cox and Todd Jones-Farrand for comments on the
manuscript, and Bill Dijak for calculating landscape statistics and
reviewing the manuscript. We thank Brad Jacobs and the Missouri
Department of Conservation for funding. We thank Bo Brown, Brian Barber,
Brett Benz, Tom Hall, and Arpad Nyari for assistance with surveys,
NR 43
TC 3
Z9 3
U1 1
U2 42
PU WILSON ORNITHOLOGICAL SOC
PI WACO
PA 5400 BOSQUE BLVD, STE 680, WACO, TX 76710 USA
SN 1559-4491
J9 WILSON J ORNITHOL
JI Wilson J. Ornithol.
PD DEC
PY 2012
VL 124
IS 4
BP 721
EP 727
PG 7
WC Ornithology
SC Zoology
GA 053PU
UT WOS:000312285900008
ER
PT J
AU Tomberlin, JK
Crippen, TL
Tarone, AM
Singh, B
Adams, K
Rezenom, YH
Benbow, ME
Flores, M
Longnecker, M
Pechal, JL
Russell, DH
Beier, RC
Wood, TK
AF Tomberlin, Jeffery K.
Crippen, Tawni L.
Tarone, Aaron M.
Singh, Baneshwar
Adams, Kelsey
Rezenom, Yohannes H.
Benbow, M. Eric
Flores, Micah
Longnecker, Michael
Pechal, Jennifer L.
Russell, David H.
Beier, Ross C.
Wood, Thomas K.
TI Interkingdom responses of flies to bacteria mediated by fly physiology
and bacterial quorum sensing
SO ANIMAL BEHAVIOUR
LA English
DT Article
DE forensic entomology; Lucilia sericata; Proteus mirabilis; resource pulse
ID SERICATA DIPTERA CALLIPHORIDAE; BLOWFLY LUCILIA-CUPRINA; PHORMIA-REGINA;
SEARCHING BEHAVIOR; MATING-BEHAVIOR; VOLATILES; SHEEP; DECOMPOSITION;
OVIPOSITION; TEMPERATURE
AB Insect location and utilization of a resource is influenced by a host of variables including nutrients acquired prior to encountering a stimulus and age of the individual. For the carrion system, we hypothesized that volatiles to which primary colonizers, such as blow flies, respond are the same signalling molecules produced and utilized for quorum sensing by bacteria found on the resource. We provided freshly emerged blow flies, Lucilia sericata, different diets (blood or powdered milk) and assessed their behaviour in a dual-choice assay based on sex and ovarian status of 7-day-old or 14-day-old adults. We determined their preference between wild-type Proteus mirabilis, which is able to swarm (a quorum-sensing response), or mutated (by transposon mutagenesis) P. mirabilis, which is unable to swarm. In most instances, an individual's sex did not significantly influence its response. Age and diet appeared to regulate fly motivation and preference. Seven-day-old flies had a significantly greater probability of responding to the wild type than to the mutant, regardless of diet, but the percentage of milk-fed flies that responded was significantly smaller (85% less) than the percentage of blood-fed flies that responded. Blood-fed flies oviposited, whereas milk-fed flies did not. Seven-day-old flies oviposited predominately on the wild type, whereas 14-day-old flies oviposited predominately on the mutant. Our results demonstrate that the mechanism used by L. sericata for detecting a resource can be associated with bacterial quorum sensing, and that the physiological state of the insect influences its response. We also identified several differences in volatile compounds produced by the bacteria that could explain blow fly response. (C) 2012 The Association for the Study of Animal Behaviour. Published by Elsevier Ltd. All rights reserved.
C1 [Tomberlin, Jeffery K.; Tarone, Aaron M.; Singh, Baneshwar; Adams, Kelsey; Flores, Micah] Texas A&M Univ, Dept Entomol, College Stn, TX 77843 USA.
[Crippen, Tawni L.; Beier, Ross C.] USDA, ARS, So Plains Agr Res Ctr, College Stn, TX USA.
[Rezenom, Yohannes H.; Russell, David H.] Texas A&M Univ, Dept Chem, College Stn, TX 77843 USA.
[Benbow, M. Eric; Pechal, Jennifer L.] Univ Dayton, Dept Biol, Dayton, OH 45469 USA.
[Longnecker, Michael] Texas A&M Univ, Dept Stat, College Stn, TX 77843 USA.
[Wood, Thomas K.] Texas A&M Univ, Dept Chem Engn, College Stn, TX 77843 USA.
RP Tomberlin, JK (reprint author), Texas A&M Univ, Dept Entomol, 2475 TAMU, College Stn, TX 77843 USA.
EM jktomberlin@tamu.edu
RI Tarone, Aaron/I-6483-2012;
OI Tarone, Aaron/0000-0003-0965-7634; Wood, Thomas/0000-0002-6258-529X
FU Agrilife Research; National Institute of Justice, Office of Justice
Programs, U.S. Department of Justice [2010-DN-BX-K243]
FX J.K.T. and A. M. T. thank Agrilife Research for providing funds to
conduct this research. Additional funds for T. L. C., M. E. B., B. S.,
J.K.T., J.L.P and A. M. T. were provided by the National Institute of
Justice, Office of Justice Programs, U.S. Department of Justice through
Grant 2010-DN-BX-K243. T. K. W. is the T Michael O'Connor Endowed
Professor at Texas A&M University. Points of view in this document are
those of the authors and do not necessarily represent the official
position or policies of the U.S. Department of Justice. Mention of trade
names, companies, or commercial products in this publication is solely
for the purpose of providing specific information and does not imply
recommendation or endorsement of the products by the U.S. Department of
Agriculture.
NR 34
TC 23
Z9 24
U1 2
U2 71
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0003-3472
J9 ANIM BEHAV
JI Anim. Behav.
PD DEC
PY 2012
VL 84
IS 6
BP 1449
EP 1456
DI 10.1016/j.anbehav.2012.09.013
PG 8
WC Behavioral Sciences; Zoology
SC Behavioral Sciences; Zoology
GA 049AA
UT WOS:000311953200020
ER
PT J
AU Mohammad, MA
Haymond, MW
AF Mohammad, Mahmoud A.
Haymond, Morey W.
TI The Magic of Mother's Milk
SO DIABETES
LA English
DT Editorial Material
ID LACTATION; DURATION
C1 [Mohammad, Mahmoud A.; Haymond, Morey W.] Baylor Coll Med, Dept Pediat, Childrens Nutr Res Ctr, USDA,Agr Res Serv, Houston, TX 77030 USA.
RP Haymond, MW (reprint author), Baylor Coll Med, Dept Pediat, Childrens Nutr Res Ctr, USDA,Agr Res Serv, Houston, TX 77030 USA.
EM mhaymond@bcm.edu
OI Mohammad, Mahmoud/0000-0002-6535-5529
NR 20
TC 1
Z9 2
U1 0
U2 31
PU AMER DIABETES ASSOC
PI ALEXANDRIA
PA 1701 N BEAUREGARD ST, ALEXANDRIA, VA 22311-1717 USA
SN 0012-1797
J9 DIABETES
JI Diabetes
PD DEC
PY 2012
VL 61
IS 12
BP 3076
EP 3077
DI 10.2337/db12-1108
PG 2
WC Endocrinology & Metabolism
SC Endocrinology & Metabolism
GA 050GR
UT WOS:000312041700010
PM 23172959
ER
PT J
AU Post, WM
Venterea, RT
AF Post, Wilfred M.
Venterea, Rodney T.
TI Managing biogeochemical cycles to reduce greenhouse gases
SO FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
LA English
DT Editorial Material
C1 [Post, Wilfred M.] Oak Ridge Natl Lab, Div Environm Sci, Oak Ridge, TN 37831 USA.
[Post, Wilfred M.] Oak Ridge Natl Lab, Climate Change Sci Inst, Oak Ridge, TN USA.
[Venterea, Rodney T.] ARS, USDA, Soil & Water Management Res Unit, St Paul, MN USA.
RP Post, WM (reprint author), Oak Ridge Natl Lab, Div Environm Sci, POB 2008, Oak Ridge, TN 37831 USA.
RI Post, Wilfred/B-8959-2012; Venterea, Rodney/A-3930-2009
NR 0
TC 3
Z9 3
U1 1
U2 42
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 1540-9295
J9 FRONT ECOL ENVIRON
JI Front. Ecol. Environ.
PD DEC
PY 2012
VL 10
IS 10
SI SI
BP 511
EP 511
PG 1
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 049KT
UT WOS:000311982600001
ER
PT J
AU Dijkstra, FA
Prior, SA
Runion, GB
Torbert, HA
Tian, HQ
Lu, CQ
Venterea, RT
AF Dijkstra, Feike A.
Prior, Stephen A.
Runion, G. Brett
Torbert, H. Allen
Tian, Hanqin
Lu, Chaoqun
Venterea, Rodney T.
TI Effects of elevated carbon dioxide and increased temperature on methane
and nitrous oxide fluxes: evidence from field experiments
SO FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
LA English
DT Review
ID TRACE GAS FLUXES; ATMOSPHERIC CO2 ENRICHMENT; ECOSYSTEM RESPONSES;
SHORTGRASS STEPPE; NORTH-AMERICA; SPRUCE FOREST; SOIL; N2O; CH4;
EMISSIONS
AB Climate change could alter terrestrial ecosystems, which are important sources and sinks of the potent greenhouse gases (GHGs) nitrous oxide (N2O) and methane (CH4), in ways that either stimulate or decrease the magnitude and duration of global warming. Using manipulative field experiments, we assessed how N2O and CH4 soil fluxes responded to a rise in atmospheric carbon dioxide (CO2) concentration and to increased air temperature. Nitrous oxide and CH4 responses varied greatly among studied ecosystems. Elevated CO2 often stimulated N2O emissions in fertilized systems and CH4 emissions in wetlands, peatlands, and rice paddy fields; both effects were stronger in clayey soils than in sandy upland soils. Elevated temperature, however, impacted N2O and CH4 emissions inconsistently. Thus, the effects of elevated CO2 concentrations on N2O and CH4 emissions may further enhance global warming, but it remains unclear whether increased temperature generates positive or negative feedbacks on these GHGs in terrestrial ecosystems. Front Ecol Environ 2012; 10(10): 520-527, doi:10.1890/120059
C1 [Dijkstra, Feike A.] Univ Sydney, Dept Environm Sci, Fac Agr & Environm, Sydney, NSW 2006, Australia.
[Prior, Stephen A.; Runion, G. Brett; Torbert, H. Allen] ARS, USDA, Natl Soil Dynam Lab, Auburn, AL USA.
[Tian, Hanqin; Lu, Chaoqun] Auburn Univ, Sch Forestry & Wildlife Sci, Auburn, AL 36849 USA.
[Venterea, Rodney T.] ARS, USDA, Soil & Water Management Res Unit, St Paul, MN USA.
RP Dijkstra, FA (reprint author), Univ Sydney, Dept Environm Sci, Fac Agr & Environm, Sydney, NSW 2006, Australia.
EM feike.dijkstra@sydney.edu.au
RI Tian, Hanqin/A-6484-2012; Dijkstra, Feike/H-2182-2012; Venterea,
Rodney/A-3930-2009;
OI Tian, Hanqin/0000-0002-1806-4091; Dijkstra, Feike/0000-0002-6191-6018
FU Australian Research Council [FT100100779]
FX FAD acknowledges support from the Australian Research Council
(FT100100779).
NR 50
TC 50
Z9 54
U1 12
U2 226
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 1540-9295
EI 1540-9309
J9 FRONT ECOL ENVIRON
JI Front. Ecol. Environ.
PD DEC
PY 2012
VL 10
IS 10
SI SI
BP 520
EP 527
DI 10.1890/120059
PG 8
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 049KT
UT WOS:000311982600003
ER
PT J
AU Tian, HQ
Lu, CQ
Chen, GS
Tao, B
Pan, SF
Del Grosso, SJ
Xu, XF
Bruhwiler, L
Wofsy, SC
Kort, EA
Prior, SA
AF Tian, Hanqin
Lu, Chaoqun
Chen, Guangsheng
Tao, Bo
Pan, Shufen
Del Grosso, Stephen J.
Xu, Xiaofeng
Bruhwiler, Lori
Wofsy, Steven C.
Kort, Eric A.
Prior, Stephen A.
TI Contemporary and projected biogenic fluxes of methane and nitrous oxide
in North American terrestrial ecosystems
SO FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
LA English
DT Review
ID MULTIFACTOR ENVIRONMENTAL-CHANGES; UNITED-STATES; BIOGEOCHEMISTRY MODEL;
TEMPORAL PATTERNS; CLIMATE-CHANGE; N2O EMISSIONS; CARBON; WETLANDS;
BUDGET; CH4
AB Accurately estimating biogenic methane (CH4) and nitrous oxide (N2O) fluxes in terrestrial ecosystems is critical for resolving global budgets of these greenhouse gases (GHGs) and continuing to mitigate climate warming. Here, we assess contemporary biogenic CH4 and N2O budgets and probable climate-change-related impacts on CH4 and N2O emissions in terrestrial North America. Multi-approach estimations show that, during 1990-2010, biogenic CH4 emissions ranged from 0.159 to 0.502 petagrams of carbon dioxide (CO2) equivalents per year (Pg CO(2)eq yr(-1), where 1 Pg = 1 x 10(15) g) and N2O emissions ranged from 0.802 to 1.016 Pg CO(2)eq yr(-1), which offset 47-166% of terrestrial CO2 sequestration (0.915-2.040 Pg CO(2)eq yr(-1), as indicated elsewhere in this Special Issue). According to two future climate scenarios, CH4 and N2O emissions are projected to continue increasing by 137-151% and 157-227%, respectively, by the end of this century, as compared with levels during 2000-2010. Strategies to mitigate climate change must account for non-CO2 GHG emissions, given their substantial warming potentials. Front Ecol Environ 2012; 10(10): 528-536, doi:10.1890/120057
C1 [Tian, Hanqin; Lu, Chaoqun; Chen, Guangsheng; Tao, Bo; Pan, Shufen] Auburn Univ, Int Ctr Climate & Global Change Res, Auburn, AL 36849 USA.
[Del Grosso, Stephen J.] ARS, Soil Plant Nutrient Res Unit, USDA, Ft Collins, CO USA.
[Xu, Xiaofeng] Oak Ridge Natl Lab, Div Environm Sci, Oak Ridge, TN 37831 USA.
[Bruhwiler, Lori] NOAA, Earth Syst Res Lab, Boulder, CO USA.
[Wofsy, Steven C.] Harvard Univ, Dept Earth & Planetary Sci, Cambridge, MA 02138 USA.
[Kort, Eric A.] CALTECH, Jet Prop Lab, Pasadena, CA USA.
[Prior, Stephen A.] ARS, USDA, Natl Soil Dynam Lab, Auburn, AL USA.
RP Tian, HQ (reprint author), Auburn Univ, Int Ctr Climate & Global Change Res, Auburn, AL 36849 USA.
EM tianhan@auburn.edu
RI Kort, Eric/F-9942-2012; Tian, Hanqin/A-6484-2012; TAO, BO/I-4166-2014;
Xu, Xiaofeng/B-2391-2008
OI Kort, Eric/0000-0003-4940-7541; Tian, Hanqin/0000-0002-1806-4091; Xu,
Xiaofeng/0000-0002-6553-6514
FU US Department of Energy's National Institute for Climatic Change
Research (NICCR) Program [DUKE-UN-07-SC-NICCR-1014]; National
Aeronautics and Space Administration (NASA) [NNX10AU06G, NNX11AD47G];
Alabama Agricultural Experiment Station (AAES) Hatch/Multistate Funding
Program
FX This study was supported by the US Department of Energy's National
Institute for Climatic Change Research (NICCR) Program
(DUKE-UN-07-SC-NICCR-1014), the National Aeronautics and Space
Administration (NASA) Atmospheric Chemistry Modeling and Analysis
Program, the NASA Terrestrial Ecology Program, the NASA
Interdisciplinary Science Program (NNX10AU06G, NNX11AD47G), and the
Alabama Agricultural Experiment Station (AAES) Hatch/Multistate Funding
Program. Portions of this work were performed at the Jet Propulsion
Laboratory, California Institute of Technology, under contract with
NASA. This study contributes to the North American Carbon Program (NACP)
Non-CO2 Greenhouse Gases Synthesis.
NR 49
TC 19
Z9 22
U1 5
U2 72
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 1540-9295
J9 FRONT ECOL ENVIRON
JI Front. Ecol. Environ.
PD DEC
PY 2012
VL 10
IS 10
SI SI
BP 528
EP 536
DI 10.1890/120057
PG 9
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 049KT
UT WOS:000311982600004
ER
PT J
AU Cavigelli, MA
Del Grosso, SJ
Liebig, MA
Snyder, CS
Fixen, PE
Venterea, RT
Leytem, AB
McLain, JE
Watts, DB
AF Cavigelli, Michel A.
Del Grosso, Stephen J.
Liebig, Mark A.
Snyder, Clifford S.
Fixen, Paul E.
Venterea, Rodney T.
Leytem, April B.
McLain, Jean E.
Watts, Dexter B.
TI US agricultural nitrous oxide emissions: context, status, and trends
SO FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
LA English
DT Review
ID ENVIRONMENTAL-IMPACT; FERTILIZER NITROGEN; USE EFFICIENCY; N2O
EMISSIONS; UNITED-STATES; CROPS; MANAGEMENT; SYSTEMS; MAIZE; YIELD
AB The use of commercial nitrogen (N) fertilizers has led to enormous increases in US agricultural productivity. However, N losses from agricultural systems have resulted in numerous deleterious environmental impacts, including a continuing increase in atmospheric nitrous oxide (N2O), a greenhouse gas (GHG) and an important catalyst of stratospheric ozone depletion. Although associated with about 7% of total US GHG emissions, agricultural systems account for 75% of total US N2O emissions. Increased productivity in the crop and livestock sectors during the past 30 to 70 years has resulted in decreased N2O emissions per unit of production, but N2O emissions from US agriculture continue to increase at a rate of approximately 0.46 teragrams of carbon dioxide equivalents per year (2002-2009). This rate is lower than that during the late 20th century. Improvements in agricultural productivity alone may be insufficient to lead to reduced emissions; implementing strategies specifically targeted at reducing N2O emissions may therefore be necessary. Front Ecol Environ 2012; 10(10): 537-546, doi:10.1890/120054
C1 [Cavigelli, Michel A.] ARS, Sustainable Agr Syst Lab, USDA, Beltsville, MD USA.
[Del Grosso, Stephen J.] ARS, Soil Plant Nutrient Res Unit, USDA, Ft Collins, CO USA.
[Liebig, Mark A.] ARS, No Great Plains Res Lab, USDA, Mandan, ND USA.
[Snyder, Clifford S.; Fixen, Paul E.] Int Plant Nutr Inst, Conway, AR USA.
[Snyder, Clifford S.; Fixen, Paul E.] Int Plant Nutr Inst, Brookings, SD USA.
[Venterea, Rodney T.] ARS, Soil & Water Management Res Unit, USDA, St Paul, MN USA.
[Leytem, April B.] NW Irrigat & Soils Res Lab, Kimberly, ID USA.
[McLain, Jean E.] Univ Arizona, Tucson, AZ USA.
[Watts, Dexter B.] ARS, Natl Soil Dynam Lab, USDA, Auburn, AL USA.
RP Cavigelli, MA (reprint author), ARS, Sustainable Agr Syst Lab, USDA, Beltsville, MD USA.
EM michel.cavigelli@ars.usda.gov
RI Venterea, Rodney/A-3930-2009;
OI Fixen, Paul/0000-0001-9555-6754
NR 53
TC 16
Z9 17
U1 5
U2 102
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 1540-9295
EI 1540-9309
J9 FRONT ECOL ENVIRON
JI Front. Ecol. Environ.
PD DEC
PY 2012
VL 10
IS 10
SI SI
BP 537
EP 546
DI 10.1890/120054
PG 10
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 049KT
UT WOS:000311982600005
ER
PT J
AU Post, WM
Izaurralde, RC
West, TO
Liebig, MA
King, AW
AF Post, Wilfred M.
Izaurralde, R. Cesar
West, Tristram O.
Liebig, Mark A.
King, Anthony W.
TI Management opportunities for enhancing terrestrial carbon dioxide sinks
SO FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
LA English
DT Review
ID LAND-USE CHANGE; DISSOLVED ORGANIC-CARBON; PINE PLANTATIONS; META
ANALYSIS; SOIL C; SEQUESTRATION; AGRICULTURE; EMISSIONS; BIOENERGY;
BIOFUELS
AB The potential for mitigating increasing atmospheric carbon dioxide concentrations through the use of terrestrial biological carbon (C) sequestration is substantial. Here, we estimate the amount of C being sequestered by natural processes at global, North American, and national US scales. We present and quantify, where possible, the potential for deliberate human actions - through forestry, agriculture, and use of biomass-based fuels - to augment these natural sinks. Carbon sequestration may potentially be achieved through some of these activities but at the expense of substantial changes in land-use management. Some practices (eg reduced tillage, improved silviculture, woody bioenergy crops) are already being implemented because of their economic benefits and associated ecosystem services. Given their cumulative greenhouse-gas impacts, other strategies (eg the use of biochar and cellulosic bioenergy crops) require further evaluation to determine whether widespread implementation is warranted. Front Ecol Environ 2012; 10(10): 554-561, doi:10.1890/120065
C1 [Post, Wilfred M.; King, Anthony W.] Oak Ridge Natl Lab, Climate Change Sci Inst, Oak Ridge, TN USA.
[Post, Wilfred M.; King, Anthony W.] Oak Ridge Natl Lab, Div Environm Sci, Oak Ridge, TN 37831 USA.
[Izaurralde, R. Cesar; West, Tristram O.] Pacific NW Natl Lab, Joint Global Change Res Inst, College Pk, MD USA.
[Liebig, Mark A.] ARS, No Great Plains Res Lab, USDA, Mandan, ND USA.
RP Post, WM (reprint author), Oak Ridge Natl Lab, Climate Change Sci Inst, Oak Ridge, TN USA.
EM wpost@utk.edu
RI Post, Wilfred/B-8959-2012; West, Tristram/C-5699-2013
OI West, Tristram/0000-0001-7859-0125
FU US Department of Energy, Office of Science, Biological and Environmental
Research (BER), Climate & Environmental Sciences Division
FX We thank R Follett for extensive comments that substantially improved
this manuscript. The US Department of Energy, Office of Science,
Biological and Environmental Research (BER), Climate & Environmental
Sciences Division provided funding to prepare this report.
NR 60
TC 18
Z9 18
U1 8
U2 172
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 1540-9295
J9 FRONT ECOL ENVIRON
JI Front. Ecol. Environ.
PD DEC
PY 2012
VL 10
IS 10
SI SI
BP 554
EP 561
DI 10.1890/120065
PG 8
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 049KT
UT WOS:000311982600007
ER
PT J
AU Venterea, RT
Halvorson, AD
Kitchen, N
Liebig, MA
Cavigelli, MA
Del Grosso, SJ
Motavalli, PP
Nelson, KA
Spokas, KA
Singh, BP
Stewart, CE
Ranaivoson, A
Strock, J
Collins, H
AF Venterea, Rodney T.
Halvorson, Ardell D.
Kitchen, Newell
Liebig, Mark A.
Cavigelli, Michel A.
Del Grosso, Stephen J.
Motavalli, Peter P.
Nelson, Kelly A.
Spokas, Kurt A.
Singh, Bhupinder Pal
Stewart, Catherine E.
Ranaivoson, Andry
Strock, Jeffrey
Collins, Hal
TI Challenges and opportunities for mitigating nitrous oxide emissions from
fertilized cropping systems
SO FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
LA English
DT Review
ID GREENHOUSE-GAS FLUXES; ANHYDROUS AMMONIA; SOIL-CONDITIONS;
CARBON-DIOXIDE; CORN-BELT; N2O; MANAGEMENT; NITRIFICATION; REDUCTION;
RESIDUES
AB Nitrous oxide (N2O) is often the largest single component of the greenhouse-gas budget of individual cropping systems, as well as for the US agricultural sector as a whole. Here, we highlight the factors that make mitigating N2O emissions from fertilized agroecosystems such a difficult challenge, and discuss how these factors limit the effectiveness of existing practices and therefore require new technologies and fresh ideas. Modification of the rate, source, placement, and/or timing of nitrogen fertilizer application has in some cases been an effective way to reduce N2O emissions. However, the efficacy of existing approaches to reducing N2O emissions while maintaining crop yields across locations and growing seasons is uncertain because of the interaction of multiple factors that regulate several different N2O-producing processes in soil. Although these processes have been well studied, our understanding of key aspects and our ability to manage them to mitigate N2O emissions remain limited. Front Ecol Environ 2012; 10(10): 562-570, doi:10.1890/120062
C1 [Venterea, Rodney T.; Spokas, Kurt A.] ARS, USDA, Soil & Water Management Res Unit, St Paul, MN USA.
[Venterea, Rodney T.; Spokas, Kurt A.; Ranaivoson, Andry; Strock, Jeffrey] Univ Minnesota, Dept Soil Water & Climate, St Paul, MN 55108 USA.
[Halvorson, Ardell D.; Del Grosso, Stephen J.; Stewart, Catherine E.] ARS, USDA, Soil Plant Nutrient Res Unit, Ft Collins, CO USA.
[Kitchen, Newell] ARS, USDA, Cropping Syst & Water Qual Res Unit, Columbia, MO USA.
[Liebig, Mark A.] ARS, USDA, No Great Plains Res Lab, Mandan, ND USA.
[Cavigelli, Michel A.] ARS, USDA, Sustainable Agr Syst Lab, Anima & Nat Resources Inst, Beltsville, MD USA.
[Motavalli, Peter P.] Univ Missouri, Dept Soil Environm & Atmospher Sci, Columbia, MO USA.
[Nelson, Kelly A.] Univ Missouri Greenley Ctr, Novelty, MO USA.
[Singh, Bhupinder Pal] NSW Dept Primary Ind, Beecroft, NSW, Australia.
[Collins, Hal] ARS, USDA, Vegetable & Forage Crops Prod Res Unit, Prosser, WA USA.
RP Venterea, RT (reprint author), ARS, USDA, Soil & Water Management Res Unit, St Paul, MN USA.
EM Rod.Venterea@ars.usda.gov
RI Venterea, Rodney/A-3930-2009; Spokas, Kurt/F-4839-2016;
OI Spokas, Kurt/0000-0002-5049-5959; Stewart, Catherine/0000-0003-1216-0450
FU Agricultural Research Service (ARS) of the US Department of Agriculture
as part of the GRACEnet Project; National Research Initiative
Competitive from the USDA CSREES/NIFA Air Quality Program
[2009-55112-05216]
FX Preparation of this manuscript was supported in part by the Agricultural
Research Service (ARS) of the US Department of Agriculture as part of
the GRACEnet Project and by a National Research Initiative Competitive
Grant no. 2009-55112-05216 from the USDA CSREES/NIFA Air Quality
Program.
NR 57
TC 60
Z9 63
U1 3
U2 156
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 1540-9295
EI 1540-9309
J9 FRONT ECOL ENVIRON
JI Front. Ecol. Environ.
PD DEC
PY 2012
VL 10
IS 10
SI SI
BP 562
EP 570
DI 10.1890/120062
PG 9
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 049KT
UT WOS:000311982600008
ER
PT J
AU Del Grosso, SJ
Cavigelli, MA
AF Del Grosso, Stephen J.
Cavigelli, Michel A.
TI Climate stabilization wedges revisited: can agricultural production and
greenhouse-gas reduction goals be accomplished?
SO FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
LA English
DT Review
ID NITROUS-OXIDE EMISSIONS; FOOD SECURITY; CARBON SEQUESTRATION;
UNITED-STATES; MITIGATION; ENERGY; TECHNOLOGIES; BIODIVERSITY;
CHALLENGE; HEALTH
AB Climate stabilization wedges are defined as strategies that contribute to greenhouse-gas (GHG) mitigation that - in aggregate - achieve a particular goal. Wedges have been proposed as a GHG mitigation framework because no single technology or economic sector can sufficiently reduce emissions to acceptable levels. To avoid the most dangerous risks of climate change, we argue that mitigation of similar to 9000 teragrams of carbon equivalents (Tg Ceq) will be required by the year 2030. We estimate that agriculture could provide wedges of 1350 to 3900 Tg Ceq under attainment of technological and human behavior mitigation potentials. Improved agricultural management can decrease nitrous oxide and methane emissions and increase carbon sequestration. Consumption of fewer livestock products along with agricultural intensification through available technologies can result in reduced emissions in both developed and developing countries. Decreasing excess protein and calorie consumption in developed countries improves personal health, while reforestation and avoided deforestation in developing countries help to maintain biodiversity. The mitigation wedges have varying economic costs but also have multiple benefits. Front Ecol Environ 2012; 10(10): 571-578, doi:10.1890/120058
C1 [Del Grosso, Stephen J.] ARS, Soil Plant Nutrient Res Unit, USDA, Ft Collins, CO USA.
[Cavigelli, Michel A.] ARS, Sustainable Agr Syst Lab, USDA, Beltsville, MD USA.
RP Del Grosso, SJ (reprint author), ARS, Soil Plant Nutrient Res Unit, USDA, Ft Collins, CO USA.
EM steve.delgrosso@ars.usda.gov
NR 58
TC 10
Z9 10
U1 3
U2 59
PU ECOLOGICAL SOC AMER
PI WASHINGTON
PA 1990 M STREET NW, STE 700, WASHINGTON, DC 20036 USA
SN 1540-9295
J9 FRONT ECOL ENVIRON
JI Front. Ecol. Environ.
PD DEC
PY 2012
VL 10
IS 10
SI SI
BP 571
EP 578
DI 10.1890/120058
PG 8
WC Ecology; Environmental Sciences
SC Environmental Sciences & Ecology
GA 049KT
UT WOS:000311982600009
ER
PT J
AU Jia, Y
Jannink, JL
AF Jia, Yi
Jannink, Jean-Luc
TI Multiple-Trait Genomic Selection Methods Increase Genetic Value
Prediction Accuracy
SO GENETICS
LA English
DT Article
ID LOCI
AB Genetic correlations between quantitative traits measured in many breeding programs are pervasive. These correlations indicate that measurements of one trait carry information on other traits. Current single-trait (univariate) genomic selection does not take advantage of this information. Multivariate genomic selection on multiple traits could accomplish this but has been little explored and tested in practical breeding programs. In this study, three multivariate linear models (i.e., GBLUP, BayesA, and BayesC pi) were presented and compared to univariate models using simulated and real quantitative traits controlled by different genetic architectures. We also extended BayesA with fixed hyperparameters to a full hierarchical model that estimated hyperparameters and BayesCp to impute missing phenotypes. We found that optimal marker-effect variance priors depended on the genetic architecture of the trait so that estimating them was beneficial. We showed that the prediction accuracy for a low-heritability trait could be significantly increased by multivariate genomic selection when a correlated high-heritability trait was available. Further, multiple-trait genomic selection had higher prediction accuracy than single-trait genomic selection when phenotypes are not available on all individuals and traits. Additional factors affecting the performance of multiple-trait genomic selection were explored.
C1 [Jia, Yi; Jannink, Jean-Luc] Cornell Univ, Dept Plant Breeding & Genet, Ithaca, NY 14853 USA.
[Jannink, Jean-Luc] USDA ARS, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA.
RP Jannink, JL (reprint author), Cornell Univ, Dept Plant Breeding & Genet, 407 Bradfield Hall, Ithaca, NY 14853 USA.
EM jeanluc.jannink@ars.usda.gov
FU U.S. Department of Agriculture, National Institute of Food and
Agriculture, Agriculture and Food Research Initiative [2009-65300-05661,
2011-68002-30029]
FX We thank Mark Sorrells for valuable feedback on the manuscript. Partial
funding for this research was provided by U.S. Department of
Agriculture, National Institute of Food and Agriculture, Agriculture and
Food Research Initiative grants, award numbers 2009-65300-05661 and
2011-68002-30029.
NR 17
TC 39
Z9 42
U1 0
U2 50
PU GENETICS SOC AM
PI BETHESDA
PA 9650 ROCKVILLE AVE, BETHESDA, MD 20814 USA
SN 0016-6731
J9 GENETICS
JI Genetics
PD DEC
PY 2012
VL 192
IS 4
BP 1513
EP +
DI 10.1534/genetics.112.144246
PG 12
WC Genetics & Heredity
SC Genetics & Heredity
GA 049CV
UT WOS:000311960500024
PM 23086217
ER
PT J
AU Malinowski, DP
Belesky, DP
Ruckle, JM
Fedders, JM
AF Malinowski, Dariusz P.
Belesky, David P.
Ruckle, Joyce M.
Fedders, James M.
TI Productivity and botanical composition of orchardgrass-white clover
swards in a cool-temperate hill land region of the eastern United States
SO GRASSLAND SCIENCE
LA English
DT Article
DE Canopy height; herbage mass; regrowth interval; residue height; sward
composition
ID MIXTURES; GROWTH; PERFORMANCE; CULTIVARS; PASTURE; COMPETITION;
VARIETIES; GRASSES; FORAGES; SEASON
AB Understanding the growth dynamics of grasslegume swards is critical as pastoral management practices are adapted to varying economic constraints and emerging environmental considerations. Efficient management must synchronize the use of accumulated herbage with the needs of grazing livestock. This must be accomplished against the dynamic background of within and among year weather patterns interacting with herbage growth and grazing animal behavior. In the Appalachian region of the eastern United States, pastures often are dominated by orchardgrass (Dactylis glomerata L.) and white clover (Trifolium repens L.). We determined botanical composition and herbage productivity of orchardgrass and white clover swards during four consecutive years when managed as a function of canopy development and regrowth interval. Productivity was influenced by defoliation practices when mixtures were managed according to canopy development. Productivity was greatest when swards were managed as hay or when clipped to a 5-cm residue each time mean canopy height reached 20 cm. White clover declined and orchardgrass increased in the sward irrespective of defoliation treatment. Botanical composition of mixtures with the erect growing orchardgrass tended to be more stable, whereas swards including the decumbent orchardgrass tended to be invaded by weeds. Some increase in productivity occurred during the first growing season when mixtures were clipped at either 2- or 4-week intervals. Regardless of defoliation practice, white clover, and in some instances orchardgrass, presence declined during two consecutive growing seasons with various other volunteer grasses and forbs contributing to productivity. Productivity and persistence of sown sward components may be less dependent on management practices than on the expression of interactions responding to within and among year weather patterns.
C1 [Malinowski, Dariusz P.] Texas AgriLife Res & Extens Ctr, Vernon, TX USA.
[Belesky, David P.; Ruckle, Joyce M.; Fedders, James M.] Agr Res Serv, USDA, Appalachian Farming Syst Res Ctr, Beaver, WV USA.
RP Belesky, DP (reprint author), POB 824, Skelton, WV 25919 USA.
EM dpb.vlb@gmail.com
NR 44
TC 2
Z9 2
U1 1
U2 19
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1744-6961
J9 GRASSL SCI
JI Grassl. Sci.
PD DEC
PY 2012
VL 58
IS 4
BP 188
EP 200
DI 10.1111/j.1744-697x.2012.00259.x
PG 13
WC Agriculture, Multidisciplinary; Agronomy
SC Agriculture
GA 051OV
UT WOS:000312137800002
ER
PT J
AU Rivas, DA
Morris, EP
Haran, PH
Pasha, EP
Morais, MD
Dolnikowski, GG
Phillips, EM
Fielding, RA
AF Rivas, Donato A.
Morris, Evan P.
Haran, Prashanth H.
Pasha, Evan P.
Morais, Mauricio da Silva
Dolnikowski, Gregory G.
Phillips, Edward M.
Fielding, Roger A.
TI Increased ceramide content and NF kappa B signaling may contribute to
the attenuation of anabolic signaling after resistance exercise in aged
males
SO JOURNAL OF APPLIED PHYSIOLOGY
LA English
DT Article
DE skeletal muscle growth; anabolic signaling; intramyocellular lipids;
inflammation; ceramide; resistance exercise; aging
ID INDUCED INSULIN-RESISTANCE; SKELETAL-MUSCLE CELLS; FORCE PRODUCTION
CHARACTERISTICS; ESSENTIAL AMINO-ACIDS; NECROSIS-FACTOR-ALPHA; SATURATED
FATTY-ACID; PROTEIN-KINASE-C; OLDER-ADULTS; ELECTROMYOGRAPHIC ACTIVITY;
INDUCED APOPTOSIS
AB Rivas DA, Morris EP, Haran PH, Pasha EP, Morais dSM, Dolnikowski GG, Phillips EM, Fielding RA. Increased ceramide content and NF kappa B signaling may contribute to the attenuation of anabolic signaling after resistance exercise in aged males. J Appl Physiol 113: 1727-1736, 2012. First published October 4, 2012; doi:10.1152/japplphysiol.00412.2012.-One of the most fundamental adaptive physiological events is the response of skeletal muscle to high-intensity resistance exercise, resulting in increased protein synthesis and ultimately larger muscle mass. However, muscle growth in response to contraction is attenuated in older humans. Impaired contractile-induced muscle growth may contribute to sarcopenia: the age-associated loss of muscle mass and function that is manifested by loss of strength, contractile capacity, and endurance. We hypothesized that the storage of ceramide would be increased in older individuals and this would be associated with increases in NF kappa B signaling and a decreased anabolic response to exercise. To test this hypothesis we measured ceramides at rest and anabolic and NF kappa B signaling after an acute bout of high-intensity resistance exercise in young and older males. Using lipidomics analysis we show there was a 156% increase in the accumulation of C16:0-ceramide (P < 0.05) and a 30% increase in C20:0-ceramide (P < 0.05) in skeletal muscle with aging, although there was no observable difference in total ceramide. C16: 0-ceramide content was negatively correlated (P = 0.008) with lower leg lean mass. Aging was associated with a similar to 60% increase in the phosphorylation of the proinflammatory transcription factor NF kappa B in the total and nuclear cell fractions (P < 0.05). Furthermore, there was an attenuated activation of anabolic signaling molecules such as Akt (P < 0.05), FOXO1 (P < 0.05), and S6K1 (P < 0.05) after an acute bout of high-intensity resistance exercise in older males. We conclude that ceramide may have a significant role in the attenuation of contractile-induced skeletal muscle adaptations and atrophy that is observed with aging.
C1 [Rivas, Donato A.; Morris, Evan P.; Haran, Prashanth H.; Pasha, Evan P.; Morais, Mauricio da Silva; Phillips, Edward M.; Fielding, Roger A.] Tufts Univ, Nutr Exercise Physiol & Sarcopenia Lab, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Dolnikowski, Gregory G.] Tufts Univ, Mass Spectrometry Unit, Jean Mayer USDA Human Nutr Res Ctr Aging, Boston, MA 02111 USA.
[Phillips, Edward M.] Spaulding Rehabil Hosp, Dept Phys Med & Rehabil, Boston, MA USA.
RP Fielding, RA (reprint author), Tufts Univ, Nutr Exercise Physiol & Sarcopenia Lab, Jean Mayer USDA Human Nutr Res Ctr Aging, 711 Washington St, Boston, MA 02111 USA.
EM roger.fielding@tufts.edu
OI Rivas, Donato/0000-0002-4500-6233
FU USDA [58-1950-0-014]; Boston Claude D. Pepper Center OAIC [1P30AG031679]
FX This material is based upon the work supported by the USDA, under
agreement No. 58-1950-0-014. The study was also supported by the Boston
Claude D. Pepper Center OAIC (1P30AG031679).
NR 71
TC 18
Z9 18
U1 2
U2 8
PU AMER PHYSIOLOGICAL SOC
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814 USA
SN 8750-7587
EI 1522-1601
J9 J APPL PHYSIOL
JI J. Appl. Physiol.
PD DEC
PY 2012
VL 113
IS 11
BP 1727
EP 1736
DI 10.1152/japplphysiol.00412.2012
PG 10
WC Physiology; Sport Sciences
SC Physiology; Sport Sciences
GA 051KR
UT WOS:000312125900008
PM 23042913
ER
PT J
AU Luce, R
Snow, J
Gross, D
Murphy, T
Grandpre, J
Daley, WR
Brudvig, JM
Ari, MD
Harris, L
Clark, TA
AF Luce, Richard
Snow, Jamie
Gross, Diane
Murphy, Tracy
Grandpre, Joseph
Daley, W. Randolph
Brudvig, Jean M.
Ari, Mary D.
Harris, Lazenia
Clark, Thomas A.
TI Brucellosis Seroprevalence Among Workers in At-Risk Professions
Northwestern Wyoming, 2005 to 2006
SO JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL MEDICINE
LA English
DT Article
ID PREVALENCE; ANTIBODIES; ELK
AB Objective: Brucellosis is uncommon in the United States; however, its circulation among wildlife and domestic cattle has been ongoing in Wyoming. To assess the public health threat of brucellosis circulation among animals, a seroprevalence study was undertaken among workers in professions considered to be at the highest risk for infection. Methods: A seroprevalence study was undertaken targeting individuals in at-risk professions in the affected area of the state. Results: Seroprevalence among study participants was 14.4%. Veterinarians were the main professional group that demonstrated a statistically significant association with measurable anti-Brucella antibodies. Vaccinating animals with Brucella vaccines was associated with seropositivity. Conclusion: The risk to the general public's health from the circulation of Brucella among wildlife and cattle can be attributed primarily to a limited subpopulation at high risk rather than a generally elevated risk.
C1 [Luce, Richard] Ctr Dis Control & Prevent, Ctr Global Hlth, Global Immunizat Div, Epidem Intelligence Serv,Off Workforce & Career D, Atlanta, GA 30333 USA.
[Luce, Richard; Murphy, Tracy; Grandpre, Joseph] Wyoming Dept Hlth, Prevent Hlth & Safety Div, Cheyenne, WY USA.
[Snow, Jamie] USDA, Anim Plant Hlth Inspect Serv, Ft Collins, CO USA.
[Gross, Diane] Ctr Dis Control & Prevent, Natl Ctr Immunizat & Resp Dis, Influenza Div, Atlanta, GA 30333 USA.
[Daley, W. Randolph] Ctr Dis Control & Prevent, EIS FieldAssignments Branch, Off Workforce & Career Dev, Atlanta, GA 30333 USA.
[Ari, Mary D.; Harris, Lazenia] Ctr Dis Control & Prevent, Natl Ctr Emerging & Zoonot Infect Dis, Atlanta, GA 30333 USA.
[Clark, Thomas A.] Ctr Dis Control & Prevent, Natl Ctr Immunizat & Resp Dis, Div Bacterial Dis, Atlanta, GA 30333 USA.
RP Luce, R (reprint author), Ctr Dis Control & Prevent, Ctr Global Hlth, Global Immunizat Div, Epidem Intelligence Serv,Off Workforce & Career D, 1600 Clifton Rd,MS A-05, Atlanta, GA 30333 USA.
EM dwe5@cdc.gov
FU US Centers for Disease Control and Prevention; Wyoming Department of
Game and Fish
FX The US Centers for Disease Control and Prevention and Wyoming Department
of Game and Fish provided funding for this study.
NR 26
TC 2
Z9 2
U1 0
U2 7
PU LIPPINCOTT WILLIAMS & WILKINS
PI PHILADELPHIA
PA 530 WALNUT ST, PHILADELPHIA, PA 19106-3621 USA
SN 1076-2752
J9 J OCCUP ENVIRON MED
JI J. Occup. Environ. Med.
PD DEC
PY 2012
VL 54
IS 12
BP 1557
EP 1560
DI 10.1097/JOM.0b013e31826e27ce
PG 4
WC Public, Environmental & Occupational Health
SC Public, Environmental & Occupational Health
GA 050PV
UT WOS:000312067400019
PM 23171917
ER
PT J
AU Choi, MS
Koh, EB
Woo, MO
Piao, R
Oh, CS
Koh, HJ
AF Choi, Min-Seon
Koh, Eun-Byeol
Woo, Mi-Ok
Piao, Rihua
Oh, Chang-Sik
Koh, Hee-Jong
TI Tiller Formation in Rice is Altered by Overexpression of OsIAGLU Gene
Encoding an IAA-conjugating Enzyme or Exogenous Treatment of Free IAA
SO JOURNAL OF PLANT BIOLOGY
LA English
DT Article
DE Auxin-conjugate; IAA-glucose synthase; Rice tiller; Shoot branching;
Transgenic plant
ID INDOLEACETIC-ACID; APICAL DOMINANCE; AUXIN TRANSPORT; GROWTH-HORMONE;
ORYZA-SATIVA; ARABIDOPSIS; PLANTS; GLUCOSYLTRANSFERASE; BIOSYNTHESIS;
SENSITIVITY
AB Optimization of plant architecture is important for cultivation and yield of cereal crops in the field. Tillering is an essential factor used to determine the overall architecture of cereal crops. It has long been recognized that the development of branching patterns is controlled by the level and distribution of auxin within a plant. To better understand the relationship between auxin levels and tittering in rice, we examined rice plants with increased or decreased levels of free IAA. To decrease IAA levels, we selected the rice IAA-glucose synthase gene (OsIAGLU) from the rice genome database based on high sequence homology with IAA-glucose synthase from maize (ZmIAGLU), which is known to generate IAA-glucose conjugate from free IAA. The OsIAGLU gene driven by the Cauliflower Mosaic Virus 35S promoter was transformed into a rice cultivar to generate transgenic rice plants constitutively over-expressing this gene. The number of tillers and panicles significantly increased in the transgenic lines compared to the wild-type plants, while plant height and panicle length decreased. These results indicate that decreased levels of free IAA likely enhance tiller formation in rice. To increase levels of free IAA, we treated rice plants with three different concentrations of exogenous IAA (1 mu M, 10 mu M and 100 mu M) twice a week by spraying. Exogenous IAA treatment at concentrations of 10 mu M and 100 mu M significantly reduced tiller number in three different rice cultivars. These results indicate that exogenously applied IAA inhibits shoot branching in rice. Overall, auxin tightly controls tiller formation in rice in a negative way.
C1 [Choi, Min-Seon; Koh, Eun-Byeol; Piao, Rihua; Koh, Hee-Jong] Seoul Natl Univ, Res Inst Agr & Life Sci, Dept Plant Sci, Seoul 151921, South Korea.
[Choi, Min-Seon; Koh, Eun-Byeol; Piao, Rihua; Koh, Hee-Jong] Seoul Natl Univ, Plant Genom & Breeding Inst, Seoul 151921, South Korea.
[Woo, Mi-Ok] ARS, Soybean Genom & Improvement Lab, USDA, Beltsville, MD 20705 USA.
[Choi, Min-Seon; Oh, Chang-Sik] Kyung Hee Univ, Dept Hort Biotechnol, Yongin 446701, South Korea.
[Choi, Min-Seon; Oh, Chang-Sik] Kyung Hee Univ, Inst Life Sci & Resources, Yongin 446701, South Korea.
RP Koh, HJ (reprint author), Seoul Natl Univ, Res Inst Agr & Life Sci, Dept Plant Sci, Seoul 151921, South Korea.
EM heejkoh@snu.ac.kr
FU Basic Science Research Program through the National Research Foundation
of Korea (NRF); Ministry of Education, Science and Technology
[KRF-2008-314-F00003]; Next-Generation BioGreen 21 Program (Plant
Molecular Breeding Center) [PJ008125]; Rural Development Administration;
National Research Foundation of Korea (NRF); Korean Government
[NRF-2011-0012016]
FX This work was supported by the Basic Science Research Program through
the National Research Foundation of Korea (NRF) funded by the Ministry
of Education, Science and Technology (KRF-2008-314-F00003) and a grant
from the Next-Generation BioGreen 21 Program (Plant Molecular Breeding
Center, No. PJ008125), Rural Development Administration, to M.-S.C. and
H.-J. K, and also by the National Research Foundation of Korea (NRF)
grant funded by the Korean Government to M.-S.C. and C.-S.O.
(NRF-2011-0012016).
NR 34
TC 3
Z9 3
U1 2
U2 35
PU SPRINGER HEIDELBERG
PI HEIDELBERG
PA TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY
SN 1226-9239
J9 J PLANT BIOL
JI J. Plant Biol.
PD DEC
PY 2012
VL 55
IS 6
BP 429
EP 435
DI 10.1007/s12374-012-0238-0
PG 7
WC Plant Sciences
SC Plant Sciences
GA 050JW
UT WOS:000312050600002
ER
PT J
AU Liu, SS
Li, AY
Lohmeyer, KH
De Leon, AAP
AF Liu, S. S.
Li, A. Y.
Lohmeyer, K. H.
De Leon, A. A. Perez
TI Effects of pyriproxyfen and buprofezin on immature development and
reproduction in the stable fly
SO MEDICAL AND VETERINARY ENTOMOLOGY
LA English
DT Article
DE Stomoxys calcitrans; bioassay; egg hatch; insect growth regulator;
larval development; oviposition; sub-lethal effect
ID GROWTH-REGULATOR PYRIPROXYFEN; BEEF-CATTLE FEEDLOTS; DIPTERA MUSCIDAE;
TREATED TARGETS; FLIES DIPTERA; PERMETHRIN RESISTANCE; TSETSE CONTROL;
INSECTICIDE; POPULATIONS; EFFICIENCY
AB The stable fly, Stomoxys calcitrans (L.) (Diptera: Muscidae), is one of the most significant biting flies that affect cattle. The use of traditional insecticides for stable fly control has only a limited success owing to the insect's unique feeding behaviours and immature development sites. A laboratory study was conducted to evaluate the effects of two insect growth regulator (IGR) products, pyriproxyfen and buprofezin, on the development of the immature stages of the stable fly and the effects of pyriproxyfen on oviposition and egg hatch. Both pyriproxyfen and buprofezin had significant inhibitory effects on immature development. The LC50s of pyriproxyfen and buprofezin were 0.002 and 18.92 p.p.m., respectively. Topical treatment of adult females with different doses of pyriproxyfen had significant negative effects on both female oviposition and egg hatching when 1- and 3-day-old females were treated, and the effects were dose dependent. A significant reduction in the mean number of eggs laid was observed only at the highest pyriproxyfen dose (8 mu g/fly) and egg hatch was unaffected by pyriproxyfen treatment when 5-day-old females were treated. Results from the present study indicate that pyriproxyfen has the potential to be used as part of an integrated stable fly management programme.
C1 [Liu, S. S.; Li, A. Y.; Lohmeyer, K. H.; De Leon, A. A. Perez] ARS, USDA, Knipling Bushland US Livestock Insects Res Lab, Kerrville, TX 78028 USA.
RP Li, AY (reprint author), ARS, USDA, Knipling Bushland US Livestock Insects Res Lab, 2700 Fredericksburg Rd, Kerrville, TX 78028 USA.
EM Andrew.Li@ars.usda.gov
FU USDA
FX The authors would like to thank Drs Pia Olafson and Yu Cheng Zhu and two
anonymous reviewers for critical review of the manuscript, Matthew
Waldon for maintaining the stable fly colony and helping with larval
diet bioassays, and Darci Burchers and DeEsta Hyatt for their assistance
in bioassays. S. S. L. was supported by a USDA Postdoctoral Research
Associate Program award to A.Y.L.
NR 28
TC 4
Z9 4
U1 1
U2 19
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0269-283X
J9 MED VET ENTOMOL
JI Med. Vet. Entomol.
PD DEC
PY 2012
VL 26
IS 4
BP 379
EP 385
DI 10.1111/j.1365-2915.2012.01013.x
PG 7
WC Entomology; Veterinary Sciences
SC Entomology; Veterinary Sciences
GA 050VG
UT WOS:000312081800003
PM 23205663
ER
PT J
AU Cabanillas, B
Cheng, HP
Grimm, CC
Hurlburt, BK
Rodriguez, J
Crespo, JF
Maleki, SJ
AF Cabanillas, Beatriz
Cheng, Hsiaopo
Grimm, Casey C.
Hurlburt, Barry K.
Rodriguez, Julia
Crespo, Jesus F.
Maleki, Soheila J.
TI Pine nut allergy: Clinical features and major allergens characterization
SO MOLECULAR NUTRITION & FOOD RESEARCH
LA English
DT Article
DE Albumin; Allergens; Anaphylaxis; Pine nut allergy; Vicilin
ID CONTROLLED FOOD CHALLENGE; 2S ALBUMIN; DOUBLE-BLIND; IN-VITRO;
ANAPHYLAXIS; DIGESTION; PROTEINS; SEEDS; L.
AB Scope The aims of this study were to evaluate IgE-mediated hypersensitivity to pine nut with details of clinical reactions and to characterize major pine nut allergens. Methods and results The study included ten consecutive teenagers and adults diagnosed with IgE-mediated clinical allergy to pine nut. Two major pine nut allergens were purified and identified and the secondary structures and susceptibility to digestion were characterized. Severe reactions represent 80% of allergic reactions to pine nut in this study. Moreover, 70% of the patients were monosensitized to this nut. Two major allergens with molecular weights of 6 and 50 kDa were purified and identified as albumin and vicilin, respectively. The 6 kDa protein (albumin), rich in a-helix content, was far more stable to peptic and tryptic digestion as compared with 50 kDa protein (vicilin), which was quickly broken down. The secondary structure of the purified 50 kDa protein showed 41% beta-sheet, 5% alpha-helix, and 54% random coil and/or loops. Conclusion Eighty percent of allergic reactions to pine nut in the ten patients included in this study were severe. Most patients (70%) were monosensitized to this nut. Two major allergens with molecular weights of 6 and 50 kDa were purified and identified as albumin and vicilin, respectively.
C1 [Cabanillas, Beatriz; Rodriguez, Julia; Crespo, Jesus F.] Hosp Univ 12 Octubre, Serv Alergia, Inst Invest Hosp 12 Octubre I 12, Madrid 28041, Spain.
[Cheng, Hsiaopo; Grimm, Casey C.; Hurlburt, Barry K.; Maleki, Soheila J.] ARS, USDA, So Reg Res Ctr, New Orleans, LA USA.
RP Cabanillas, B (reprint author), Hosp Univ 12 Octubre, Serv Alergia, Inst Invest Hosp 12 Octubre I 12, Ave Cordoba S-N, Madrid 28041, Spain.
EM bcabanillas.hdoc@salud.madrid.org
RI Rodriguez Herrera, Juan Jose/I-3210-2015; Rodriguez, Maria/P-1090-2014;
OI Rodriguez, Maria/0000-0002-1599-8227; Cabanillas,
Beatriz/0000-0002-5351-8140
FU Ministerio de Educacion y Ciencia [AGL2008-03453-C02]; Instituto Carlos
III Ministerio de Ciencia e Innovacion [FI07 / 00286]
FX This study was supported by Grant AGL2008-03453-C02, Ministerio de
Educacion y Ciencia and Grant no. FI07 / 00286 Instituto Carlos III
Ministerio de Ciencia e Innovacion. We would like to thank Dr. Hee-Jin
Kim for his advice and generous support on RNA isolation and cloning of
the allergen from pine nut.
NR 26
TC 9
Z9 9
U1 0
U2 17
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 1613-4125
J9 MOL NUTR FOOD RES
JI Mol. Nutr. Food Res.
PD DEC
PY 2012
VL 56
IS 12
BP 1884
EP 1893
DI 10.1002/mnfr.201200245
PG 10
WC Food Science & Technology
SC Food Science & Technology
GA 051MV
UT WOS:000312132300014
PM 23081934
ER
PT J
AU Wu, QY
Shigaki, T
Han, JS
Kim, CK
Hirschi, KD
Park, S
AF Wu, Qingyu
Shigaki, Toshiro
Han, Jeung-Sul
Kim, Chang Kil
Hirschi, Kendal D.
Park, Sunghun
TI Ectopic expression of a maize calreticulin mitigates calcium
deficiency-like disorders in sCAX1-expressing tobacco and tomato
SO PLANT MOLECULAR BIOLOGY
LA English
DT Article
DE Calcium; CAX; CRT; Co-expression; Tomato
ID BLOSSOM-END ROT; ENDOPLASMIC-RETICULUM; AGROBACTERIUM-TUMEFACIENS;
GENETIC MANIPULATION; CA2+/H+ ANTIPORTER; HIGHER-PLANTS; ARABIDOPSIS;
CAX1; GROWTH; TRANSFORMATION
AB Deregulated expression of an Arabidopsis H+/Ca2+ antiporter (sCAX1) in agricultural crops increases total calcium (Ca2+) but may result in yield losses due to Ca2+ deficiency-like symptoms. Here we demonstrate that co-expression of a maize calreticulin (CRT, a Ca2+ binding protein located at endoplasmic reticulum) in sCAX1-expressing tobacco and tomato plants mitigated these adverse effects while maintaining enhanced Ca2+ content. Co-expression of CRT and sCAX1 could alleviate the hypersensitivity to ion imbalance in tobacco plants. Furthermore, blossom-end rot (BER) in tomato may be linked to changes in CAX activity and enhanced CRT expression mitigated BER in sCAX1 expressing lines. These findings suggest that co-expressing Ca2+ transporters and binding proteins at different intracellular compartments can alter the content and distribution of Ca2+ within the plant matrix.
C1 [Wu, Qingyu; Park, Sunghun] Kansas State Univ, Dept Hort Forestry & Recreat Resources, Manhattan, KS 66506 USA.
[Shigaki, Toshiro] Papua New Guinea Natl Agr Res Inst, Lae, Morobe Province, Papua N Guinea.
[Han, Jeung-Sul] Kyungpook Natl Univ, Dept Ecol Environm, Sangju 742711, South Korea.
[Kim, Chang Kil] Kyungpook Natl Univ, Dept Hort Sci, Sangju 742711, South Korea.
[Hirschi, Kendal D.] Baylor Coll Med, USDA, ARS, Childrens Nutr Res Ctr, Houston, TX 77030 USA.
RP Park, S (reprint author), Kansas State Univ, Dept Hort Forestry & Recreat Resources, Manhattan, KS 66506 USA.
EM shpark@ksu.edu
RI Wu, Qingyu/E-4636-2017
OI Wu, Qingyu/0000-0003-3064-2445
FU Kansas State University AES project [NAHF381121]; NIHHS RDA-KSU
Cooperative Research Project; Technology Development Program for
Agriculture and Forestry, Ministry of Agriculture and Forestry, Republic
of Korea
FX This research was supported by the Kansas State University AES project
NAHF381121 (to SHP), the NIHHS RDA-KSU Cooperative Research Project
(JSH) and the Technology Development Program for Agriculture and
Forestry, Ministry of Agriculture and Forestry, Republic of Korea (CKK).
We thank Dr. Wendy Boss for her inspiration and Dr. Staffan Persson
(Max-Planck-Institute, Germany) for supplying the pE1775::CRT expression
vector.
NR 50
TC 0
Z9 0
U1 1
U2 24
PU SPRINGER
PI DORDRECHT
PA VAN GODEWIJCKSTRAAT 30, 3311 GZ DORDRECHT, NETHERLANDS
SN 0167-4412
J9 PLANT MOL BIOL
JI Plant Mol.Biol.
PD DEC
PY 2012
VL 80
IS 6
BP 609
EP 619
DI 10.1007/s11103-012-9970-6
PG 11
WC Biochemistry & Molecular Biology; Plant Sciences
SC Biochemistry & Molecular Biology; Plant Sciences
GA 051NN
UT WOS:000312134200005
PM 23007728
ER
PT J
AU Betzelberger, AM
Yendrek, CR
Sun, JD
Leisner, CP
Nelson, RL
Ort, DR
Ainsworth, EA
AF Betzelberger, Amy M.
Yendrek, Craig R.
Sun, Jindong
Leisner, Courtney P.
Nelson, Randall L.
Ort, Donald R.
Ainsworth, Elizabeth A.
TI Ozone Exposure Response for U.S. Soybean Cultivars: Linear Reductions in
Photosynthetic Potential, Biomass, and Yield
SO PLANT PHYSIOLOGY
LA English
DT Article
ID LEAF OPTICAL-PROPERTIES; ELEVATED OZONE; ANTIOXIDANT CAPACITY;
CELL-DEATH; CHLOROPHYLL FLUORESCENCE; TROPOSPHERIC OZONE; DEPENDENT
CHANGES; OXIDATIVE STRESS; CARBON-DIOXIDE; CLIMATE-CHANGE
AB Current background ozone (O-3) concentrations over the northern hemisphere's midlatitudes are high enough to damage crops and are projected to increase. Soybean (Glycine max) is particularly sensitive to O-3; therefore, establishing an O-3 exposure threshold for damage is critical to understanding the current and future impact of this pollutant. This study aims to determine the exposure response of soybean to elevated tropospheric O-3 by measuring the agronomic, biochemical, and physiological responses of seven soybean genotypes to nine O-3 concentrations (38-120 nL L-1) within a fully open-air agricultural field location across 2 years. All genotypes responded similarly, with season-long exposure to O-3 causing a linear increase in antioxidant capacity while reducing leaf area, light absorption, specific leaf mass, primary metabolites, seed yield, and harvest index. Across two seasons with different temperature and rainfall patterns, there was a robust linear yield decrease of 37 to 39 kg ha(-1) per nL L-1 cumulative O-3 exposure over 40 nL L-1. The existence of immediate effects of O-3 on photosynthesis, stomatal conductance, and photosynthetic transcript abundance before and after the initiation and termination of O-3 fumigation were concurrently assessed, and there was no evidence to support an instantaneous photosynthetic response. The ability of the soybean canopy to intercept radiation, the efficiency of photosynthesis, and the harvest index were all negatively impacted by O-3, suggesting that there are multiple targets for improving soybean responses to this damaging air pollutant.
C1 [Betzelberger, Amy M.; Leisner, Courtney P.; Ort, Donald R.; Ainsworth, Elizabeth A.] Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA.
[Yendrek, Craig R.; Sun, Jindong; Ort, Donald R.; Ainsworth, Elizabeth A.] Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USA.
[Nelson, Randall L.] Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
[Nelson, Randall L.; Ainsworth, Elizabeth A.] ARS, Genet Res Unit, USDA, Urbana, IL 61801 USA.
[Yendrek, Craig R.; Ort, Donald R.; Ainsworth, Elizabeth A.] ARS, Global Change & Photosynth Res Unit, USDA, Urbana, IL 61801 USA.
RP Ainsworth, EA (reprint author), Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA.
EM lisa.ainsworth@ars.usda.gov
RI Yendrek, Craig/A-7126-2013
OI Yendrek, Craig/0000-0002-0557-325X
FU U.S. Department of Agriculture Agricultural Research Service;
Agriculture and Food Research Initiative from the U.S. Department of
Agriculture National Institute of Food and Agriculture
[2010-65114-20355]
FX This work was supported by the U.S. Department of Agriculture
Agricultural Research Service and the Agriculture and Food Research
Initiative (competitive grant no. 2010-65114-20355 to E.A.A.) from the
U.S. Department of Agriculture National Institute of Food and
Agriculture.
NR 71
TC 29
Z9 31
U1 1
U2 78
PU AMER SOC PLANT BIOLOGISTS
PI ROCKVILLE
PA 15501 MONONA DRIVE, ROCKVILLE, MD 20855 USA
SN 0032-0889
J9 PLANT PHYSIOL
JI Plant Physiol.
PD DEC
PY 2012
VL 160
IS 4
BP 1827
EP 1839
DI 10.1104/pp.112.205591
PG 13
WC Plant Sciences
SC Plant Sciences
GA 049QJ
UT WOS:000311998200014
PM 23037504
ER
PT J
AU Ma, Q
Du, WY
Brandizzi, F
Giovannoni, JJ
Barry, CS
AF Ma, Qian
Du, Wenyan
Brandizzi, Federica
Giovannoni, James J.
Barry, Cornelius S.
TI Differential Control of Ethylene Responses by GREEN-RIPE and GREEN-RIPE
LIKE1 Provides Evidence for Distinct Ethylene Signaling Modules in
Tomato
SO PLANT PHYSIOLOGY
LA English
DT Article
ID RECEPTOR GENE FAMILY; RAF-LIKE KINASE; ARABIDOPSIS-THALIANA;
ENDOPLASMIC-RETICULUM; NEGATIVE REGULATOR; MULTIGENE FAMILY;
GOLGI-APPARATUS; ETR1; EIN2; EXPRESSION
AB The factors that mediate specific responses to the plant hormone ethylene are not fully defined. In particular, it is not known how signaling at the receptor complex can control distinct subsets of ethylene responses. Mutations at the Green-ripe (Gr) and reversion to ethylene sensitivity1 (rte1) loci, which encode homologous proteins of unknown function, influence ethylene responses in tomato (Solanum lycopersicum) and Arabidopsis (Arabidopsis thaliana), respectively. In Arabidopsis, AtRTE1 is required for function of the ETR1 ethylene receptor and acts predominantly through this receptor via direct protein-protein interaction. While most eudicot families including the Brassicaceae possess a single gene that is closely related to AtRTE1, we report that members of the Solanaceae family contain two phylogenetically distinct genes defined by GR and GREEN-RIPE LIKE1 (GRL1), creating the possibility of subfunctionalization. We also show that SlGR and SlGRL1 are differentially expressed in tomato tissues and encode proteins predominantly localized to the Golgi. A combination of overexpression in tomato and complementation of the rte1-3 mutant allele indicates that SlGR and SlGRL1 influence distinct but overlapping ethylene responses. Overexpression of SlGRL1 in the Gr mutant background provides evidence for the existence of different ethylene signaling modules in tomato that are influenced by GR, GRL1, or both. In addition, overexpression of AtRTE1 in tomato leads to reduced ethylene responsiveness in a subset of tissues but does not mimic the Gr mutant phenotype. Together, these data reveal species-specific heterogeneity in the control of ethylene responses mediated by members of the GR/RTE1 family.
C1 [Ma, Qian; Barry, Cornelius S.] Michigan State Univ, Dept Hort, E Lansing, MI 48824 USA.
[Du, Wenyan; Brandizzi, Federica] Michigan State Univ, Dept Energy Plant Res Lab, E Lansing, MI 48824 USA.
[Du, Wenyan; Brandizzi, Federica] Michigan State Univ, Dept Plant Biol, E Lansing, MI 48824 USA.
[Giovannoni, James J.] Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA.
[Giovannoni, James J.] Cornell Univ, USDA ARS, Robert W Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA.
RP Barry, CS (reprint author), Michigan State Univ, Dept Hort, E Lansing, MI 48824 USA.
EM barrycs@msu.edu
OI Barry, Cornelius/0000-0003-4685-0273
FU Michigan State University and Michigan AgBioResearch; National Science
Foundation [IOS-0923312, MCB 0948584]; Chemical Sciences, Geosciences,
and Biosciences Division, Office of Basic Energy Sciences, Office of
Science, U.S. Department of Energy [DE-FG02-91ER20021]
FX This work was supported by Michigan State University and Michigan
AgBioResearch to C.S.B., by the National Science Foundation (grant nos.
IOS-0923312 to J.J.G. and MCB 0948584 to F.B.), and by the Chemical
Sciences, Geosciences, and Biosciences Division, Office of Basic Energy
Sciences, Office of Science, U.S. Department of Energy (award no.
DE-FG02-91ER20021 to F. B.).
NR 77
TC 15
Z9 17
U1 1
U2 39
PU AMER SOC PLANT BIOLOGISTS
PI ROCKVILLE
PA 15501 MONONA DRIVE, ROCKVILLE, MD 20855 USA
SN 0032-0889
EI 1532-2548
J9 PLANT PHYSIOL
JI Plant Physiol.
PD DEC
PY 2012
VL 160
IS 4
BP 1968
EP 1984
DI 10.1104/pp.112.205476
PG 17
WC Plant Sciences
SC Plant Sciences
GA 049QJ
UT WOS:000311998200024
PM 23043080
ER
PT J
AU Radwan, O
Wu, X
Govindarajulu, M
Libault, M
Neece, DJ
Oh, MH
Berg, RH
Stacey, G
Taylor, CG
Huber, SC
Clough, SJ
AF Radwan, Osman
Wu, Xia
Govindarajulu, Manjula
Libault, Marc
Neece, David J.
Oh, Man-Ho
Berg, R. Howard
Stacey, Gary
Taylor, Christopher G.
Huber, Steven C.
Clough, Steven J.
TI 14-3-3 Proteins SGF14c and SGF141 Play Critical Roles during Soybean
Nodulation
SO PLANT PHYSIOLOGY
LA English
DT Article
ID GENE-EXPRESSION; GLUTAMINE-SYNTHETASE; MEDICAGO-TRUNCATULA; NITRATE
REDUCTASE; BINDING; PHOSPHORYLATION; ARABIDOPSIS; FAMILY; PLANTS; ROOTS
AB The soybean (Glycine max) genome contains 18 members of the 14-3-3 protein family, but little is known about their association with specific phenotypes. Here, we report that the Glyma0529080 Soybean G-box Factor 14-3-3c (SGF14c) and Glyma08g12220 (SGF14l) genes, encoding 14-3-3 proteins, appear to play essential roles in soybean nodulation. Quantitative reverse transcription-polymerase chain reaction and western-immunoblot analyses showed that SGF14c mRNA and protein levels were specifically increased in abundance in nodulated soybean roots 10, 12, 16, and 20 d after inoculation with Bradyrhizobium japonicum. To investigate the role of SGF14c during soybean nodulation, RNA interference was employed to silence SGF14c expression in soybean roots using Agrobacterium rhizogenes-mediated root transformation. Due to the paleopolyploid nature of soybean,designing a specific RNA interference sequence that exclusively targeted SGF14c was not possible. Therefore, two highly similar paralogs (SGF14c and SGF14l) that have been shown to function as dimers were silenced. Transcriptomic and proteomic analyses showed that mRNA and protein levels were significantly reduced in the SGF14c/SGF14l-silenced roots, and these roots exhibited reduced numbers of mature nodules. In addition, SGF14c/SGF14l-silenced roots contained large numbers of arrested nodule primordia following B. japonicum inoculation. Transmission electron microscopy further revealed that the host cytoplasm and membranes, except the symbiosome membrane, were severely degraded in the failed nodules. Altogether, transcriptomic, proteomic, and cytological data suggest a critical role of one or both of these 14-3-3 proteins in early development stages of soybean nodules.
C1 [Radwan, Osman; Clough, Steven J.] Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
[Wu, Xia; Oh, Man-Ho; Huber, Steven C.] Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA.
[Govindarajulu, Manjula] Univ Calif Davis, Genome Ctr, Davis, CA 95631 USA.
[Libault, Marc; Stacey, Gary] Univ Missouri, Div Plant Sci, Columbia, MO 65211 USA.
[Libault, Marc; Stacey, Gary] Univ Missouri, Div Biochem, Columbia, MO 65211 USA.
[Neece, David J.; Huber, Steven C.; Clough, Steven J.] ARS, USDA, Urbana, IL 61801 USA.
[Berg, R. Howard] Danforth Plant Sci Ctr, St Louis, MO 63132 USA.
[Taylor, Christopher G.] Ohio State Univ, Dept Plant Pathol, Wooster, OH 44691 USA.
RP Clough, SJ (reprint author), Univ Illinois, Dept Crop Sci, Urbana, IL 61801 USA.
EM steven.clough@ars.usda.gov
RI Wu, Xia/J-8690-2014; Berg, R. Howard/M-2839-2013
OI Wu, Xia/0000-0002-0024-4481; Berg, R. Howard/0000-0001-5081-2769
FU National Science Foundation Plant Genome Program [DBI-0421620];
University of Illinois Soybean Disease Biotechnology Center; U.S.
Department of Agriculture-Agricultural Research Service
FX This work was supported by the National Science Foundation Plant Genome
Program (grant no. DBI-0421620), the University of Illinois Soybean
Disease Biotechnology Center, and the U.S. Department of
Agriculture-Agricultural Research Service.
NR 54
TC 16
Z9 17
U1 2
U2 22
PU AMER SOC PLANT BIOLOGISTS
PI ROCKVILLE
PA 15501 MONONA DRIVE, ROCKVILLE, MD 20855 USA
SN 0032-0889
EI 1532-2548
J9 PLANT PHYSIOL
JI Plant Physiol.
PD DEC
PY 2012
VL 160
IS 4
BP 2125
EP 2136
DI 10.1104/pp.112.207027
PG 12
WC Plant Sciences
SC Plant Sciences
GA 049QJ
UT WOS:000311998200036
PM 23060368
ER
PT J
AU Vick, BD
Myers, DR
Boyson, WE
AF Vick, Brian D.
Myers, Daryl R.
Boyson, William E.
TI Using direct normal irradiance models and utility electrical loading to
assess benefit of a concentrating solar power plant
SO SOLAR ENERGY
LA English
DT Article
DE Direct normal irradiance; Solar resource measurement; Modeling;
Electrical loading; Concentrating solar
ID VALIDATION; DIFFUSE; RADIATION; FRACTION
AB The objective of this paper was to determine if three different direct normal irradiance (DNI) models were sufficiently accurate to determine if concentrating solar power (CSP) plants could meet the utility electrical load. DNI data were measured at three different laboratories in the United States and compared with DNI calculated by three DNI models. In addition, utility electrical loading data were obtained for all three locations. The DNI models evaluated were: the Direct Insolation Simulation Code (DISC), DIRINT, and DIRINDEX. On an annual solar insolation (e.g. kW h/m(2)) basis, the accuracy of the DNI models at all three locations was within: 7% (DISC), 5% (DIRINT), and 3% (DIRINDEX). During the three highest electrical loading months at the three locations, the monthly accuracy varied from: 0% to 16% (DISC), 0% to 9% (DIRINT), and 0% to 8% (DIRINDEX). At one location different pyranometers were used to measure GHI, and the most expensive pyranometers did not improve the DNI model monthly accuracy. In lieu of actually measuring DNI, using the DIRINT model was felt to be sufficient for assessing whether to build a CSP plant at one location, but use of either the DIRINT or DIRINDEX models was felt to be marginal for the other two locations due to errors in modeling DNI for utility peak electrical loading days - especially for partly cloudy days. Published by Elsevier Ltd.
C1 [Vick, Brian D.] USDA ARS, Bushland, TX 79012 USA.
[Myers, Daryl R.] Natl Renewable Energy Lab, Golden, CO 80401 USA.
[Boyson, William E.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
RP Vick, BD (reprint author), USDA ARS, PO Drawer 10, Bushland, TX 79012 USA.
EM brian.vick@ars.usda.gov
NR 26
TC 7
Z9 7
U1 0
U2 12
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0038-092X
J9 SOL ENERGY
JI Sol. Energy
PD DEC
PY 2012
VL 86
IS 12
SI SI
BP 3519
EP 3530
DI 10.1016/j.solener.2012.03.010
PG 12
WC Energy & Fuels
SC Energy & Fuels
GA 051JA
UT WOS:000312121300003
ER
PT J
AU Evett, SR
Kustas, WP
Gowda, PH
Anderson, MC
Prueger, JH
Howell, TA
AF Evett, Steven R.
Kustas, William P.
Gowda, Prasanna H.
Anderson, Martha C.
Prueger, John H.
Howell, Terry A.
TI Overview of the Bushland Evapotranspiration and Agricultural Remote
sensing EXperiment 2008 (BEAREX08): A field experiment evaluating
methods for quantifying ET at multiple scales
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Evapotranspiration; Remote sensing; Energy balance model; Advection;
Eddy covariance; Weighing lysimeter
ID SOIL HEAT-FLUX; DOMAIN REFLECTOMETRY MEASUREMENTS; FREQUENCY-RESPONSE
CORRECTIONS; BULK ELECTRICAL-CONDUCTIVITY; WATER-CONTENT DETERMINATION;
SURFACE-ENERGY BALANCE; TACQ COMPUTER-PROGRAM; LAND-SURFACE; MAPPING
EVAPOTRANSPIRATION; 2-SOURCE MODEL
AB In 2008, scientists from seven federal and state institutions worked together to investigate temporal and spatial variations of evapotranspiration (ET) and surface energy balance in a semi-arid irrigated and dryland agricultural region of the Southern High Plains in the Texas Panhandle. This Bushland Evapotranspiration and Agricultural Remote sensing EXperiment 2008 (BEAREX08) involved determination of micrometeorological fluxes (surface energy balance) in four weighing lysimeter fields (each 4.7 ha) containing irrigated and dryland cotton and in nearby bare soil, wheat stubble and rangeland fields using nine eddy covariance stations, three large aperture scintillometers, and three Bowen ratio systems. In coordination with satellite overpasses, flux and remote sensing aircraft flew transects over the surrounding fields and region encompassing an area contributing fluxes from 10 to 30 km upwind of the USDA-ARS lysimeter site. Tethered balloon soundings were conducted over the irrigated fields to investigate the effect of advection on local boundary layer development. Local ET was measured using four large weighing lysimeters, while field scale estimates were made by soil water balance with a network of neutron probe profile water sites and from the stationary flux systems. Aircraft and satellite imagery were obtained at different spatial and temporal resolutions. Plot-scale experiments dealt with row orientation and crop height effects on spatial and temporal patterns of soil surface temperature, soil water content, soil heat flux, evaporation from soil in the interrow, plant transpiration and canopy and soil radiation fluxes. The BEAREX08 field experiment was unique in its assessment of ET fluxes over a broad range in spatial scales; comparing direct and indirect methods at local scales with remote sensing based methods and models using aircraft and satellite imagery at local to regional scales, and comparing mass balance-based ET ground truth with eddy covariance and remote sensing-based methods. Here we present an overview of the experiment and a summary of preliminary findings described in this special issue of AWR. Our understanding of the role of advection in the measurement and modeling of ET is advanced by these papers integrating measurements and model estimates. Published by Elsevier Ltd.
C1 [Evett, Steven R.; Gowda, Prasanna H.; Howell, Terry A.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
[Kustas, William P.; Anderson, Martha C.] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
[Prueger, John H.] USDA ARS, Natl Lab Agr & Environm, Ames, IA USA.
RP Evett, SR (reprint author), USDA ARS, Conservat & Prod Res Lab, PO Drawer 10, Bushland, TX 79012 USA.
EM steve.evett@ars.usda.gov
RI Anderson, Martha/C-1720-2015; Kustas, William/C-2063-2015
OI Anderson, Martha/0000-0003-0748-5525;
FU USDA-ARS Ogallala Aquifer Program
FX We gratefully acknowledge support from the USDA-ARS Ogallala Aquifer
Program, a consortium between USDA-Agricultural Research Service, Kansas
State University, Texas AgriLife Research, Texas AgriLife Extension
Service, Texas Tech University, and West Texas A&M University.
NR 110
TC 43
Z9 44
U1 2
U2 48
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 4
EP 19
DI 10.1016/j.advwatres.2012.03.010
PG 16
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300002
ER
PT J
AU Agam, N
Evett, SR
Tolk, JA
Kustas, WP
Colaizzi, PD
Alfieri, JG
Mckee, LG
Copeland, KS
Howell, TA
Chavez, JL
AF Agam, Nurit
Evett, Steven R.
Tolk, Judy A.
Kustas, William P.
Colaizzi, Paul D.
Alfieri, Joseph G.
Mckee, Lynn G.
Copeland, Karen S.
Howell, Terry A.
Chavez, Jose L.
TI Evaporative loss from irrigated interrows in a highly advective
semi-arid agricultural area
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Soil evaporation; Transpiration; Irrigated row-crop; Row orientation
ID DRYLAND GRAIN-SORGHUM; SPRINKLER IRRIGATION; PLANTING GEOMETRY; BARE
SOIL; WATER-USE; EVAPOTRANSPIRATION; CROP; TRANSPIRATION; CLIMATE;
EFFICIENCY
AB Agricultural productivity has increased in the Texas High Plains at the cost of declining water tables, putting at risk the sustainability of the Ogallala Aquifer as a principal source of water for irrigated agriculture. This has led area producers to seek alternative practices that can increase water use efficiency (WUE) through more careful management of water. One potential way of improving WUE is by reducing soil evaporation (E), thus reducing overall evapotranspiration (ET). Before searching for ways to reduce E, it is first important to quantify E and understand the factors that determine its magnitude. The objectives of this study were (1) to quantify E throughout part of the growing season for irrigated cotton in a strongly advective semi-arid region; (2) to study the effects of LAI, days after irrigation, and measurement location within the row on the E/ET fraction; and (3) to study the ability of microlysimeter (ML) measures of E combined with sap flow gage measures of transpiration (T) to accurately estimate ET when compared with weighing lysimeter ET data and to assess the E/T ratio. The research was conducted in an irrigated cotton field at the Conservation & Production Research Laboratory of the USDA-ARS, Bushland, TX. ET was measured by a large weighing lysimeter, and E was measured by 10 microlysimeters that were deployed in two sets of 5 across the interrow. In addition, 10 heat balance sap flow gages were used to determine T. A moderately good agreement was found between the sum E + T and ET (SE = 1 mm or similar to 10% of ET). It was found that E may account for >50% of ET during early stages of the growing season (LAI < 0.2), significantly decreasing with increase in LAI to values near 20% at peak LAI of three. Measurement location within the north-south interrows had a distinct effect on the diurnal pattern of E, with a shift in time of peak E from west to east, a pattern that was governed by the solar radiation reaching the soil surface. However, total daily E was unaffected by position in the interrow. Under wet soil conditions, wind speed and direction affected soil evaporation. Row orientation interacted with wind direction in this study such that aerodynamic resistance to E usually increased when wind direction was perpendicular to row direction; but this interaction needs further study because it appeared to be lessened under higher wind speeds. (C) 2012 Elsevier Ltd. All rights reserved.
C1 [Agam, Nurit] Agr Res Org Israel, Gilat Res Ctr, IL-85280 Rural Delivery Negev, Israel.
[Evett, Steven R.; Tolk, Judy A.; Colaizzi, Paul D.; Copeland, Karen S.; Howell, Terry A.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
[Kustas, William P.; Alfieri, Joseph G.; Mckee, Lynn G.] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
[Chavez, Jose L.] Colorado State Univ, Dept Civil & Environm Engn CEE, Ft Collins, CO 80523 USA.
RP Agam, N (reprint author), Agr Res Org Israel, Gilat Res Ctr, IL-85280 Rural Delivery Negev, Israel.
EM agam@agri.gov.il
RI Kustas, William/C-2063-2015;
OI Agam, Nurit/0000-0002-8921-6179
FU USDA-ARS Ogallala Aquifer Program
FX We gratefully acknowledge support from the USDA-ARS Ogallala Aquifer
Program, a consortium between USDA-Agricultural Research Service, Kansas
State University, Texas AgriLife Research, Texas AgriLife Extension
Service, Texas Tech University, and West Texas A&M University. Travel
support for the research was provided by USDA-ARS.
NR 51
TC 31
Z9 32
U1 3
U2 55
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 20
EP 30
DI 10.1016/j.advwatres.2012.07.010
PG 11
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300003
ER
PT J
AU Agam, N
Kustas, WP
Evett, SR
Colaizzi, PD
Cosh, MH
McKee, LG
AF Agam, Nurit
Kustas, William P.
Evett, Steven R.
Colaizzi, Paul D.
Cosh, Michael H.
McKee, Lynn G.
TI Soil heat flux variability influenced by row direction in irrigated
cotton
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Soil heat flux; Row direction; Row crop
ID TIME-DOMAIN REFLECTOMETRY; DRYLAND GRAIN-SORGHUM; WATER-CONTENT;
NET-RADIATION; ELECTRICAL-CONDUCTIVITY; LABORATORY CALIBRATION; PLANTING
GEOMETRY; LONG-TERM; SURFACE; CANOPY
AB Spatial and temporal variability in soil heat flux (G) under sparse/clumped vegetation conditions is significant and has been studied. However, little attention has been devoted to evaluating the variability of G with respect to row crops, particularly with respect to row direction. The variation in G for row crops is related to the effect of differential shading of the soil surface, which is dependent on plant architecture, row spacing, and row direction. This paper reports the effect of row direction and sensor position on G magnitude and variability in an irrigated row crop of cotton. In addition, the effect of errors in water content estimation on the heat storage in the uppermost soil layer is assessed. The research was conducted in the Southern High Plains of the USA, as part of the Bushland Evapotranspiration and Agricultural Remote Sensing Experiment of 2008 (BEAREX08). Measurements were concentrated in two irrigated cotton fields, one with north-south (N-S) and the other with east-west (E-W) row directions, with ten sets of sensors in each field. Row direction had an effect on both the temporal dynamics and the total daily G. Important short-term (15-min average) variability in G at the various positions in the interrow was observed under partial canopy cover conditions for the N-S row direction, while the daily sum of G (RG) in both row directions was similar. In the beginning and the end of the growing season, RG was larger in the N-S direction field. In the E-W direction field, strategically located 3-replicate sensor sets (as are often deployed at flux tower installations) were found to adequately describe the 10-sensor average G, with errors as small as 6% and with a transitory maximum error of 12%. In the N-S row direction field, however, no 3-position combination was adequate to represent the 10-sensor average G. (C) 2012 Elsevier Ltd. All rights reserved.
C1 [Agam, Nurit] Agr Res Org, Gilat Res Ctr, IL-85820 Rural Delivery Negev, Israel.
[Kustas, William P.; Cosh, Michael H.; McKee, Lynn G.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
[Evett, Steven R.; Colaizzi, Paul D.] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
RP Agam, N (reprint author), Agr Res Org, Gilat Res Ctr, IL-85820 Rural Delivery Negev, Israel.
EM agam@agri.gov.il
RI Cosh, MIchael/A-8858-2015; Kustas, William/C-2063-2015; Agam,
Nurit/E-1836-2013
OI Cosh, MIchael/0000-0003-4776-1918; Agam, Nurit/0000-0002-8921-6179
NR 42
TC 7
Z9 7
U1 3
U2 16
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 31
EP 40
DI 10.1016/j.advwatres.2012.07.017
PG 10
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300004
ER
PT J
AU Evett, SR
Agam, N
Kustas, WP
Colaizzi, PD
Schwartz, RC
AF Evett, Steven R.
Agam, Nurit
Kustas, William P.
Colaizzi, Paul D.
Schwartz, Robert C.
TI Soil profile method for soil thermal diffusivity, conductivity and heat
flux: Comparison to soil heat flux plates
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Soil heat flux; Thermal gradient method; Heat flux plate method; Thermal
conductivity; Evaporative flux
ID TIME-DOMAIN REFLECTOMETRY; BULK ELECTRICAL-CONDUCTIVITY; TACQ
COMPUTER-PROGRAM; WATER CONTENT
AB Diffusive heat flux at the soil surface is commonly determined as a mean value over a time period using heat flux plates buried at some depth (e. g., 5-8 cm) below the surface with a correction to surface flux based on the change in heat storage during the corresponding time period in the soil layer above the plates. The change in heat storage is based on the soil temperature change in the layer over the time period and an estimate of the soil thermal heat capacity that is based on soil water content, bulk density and organic matter content. One-or multiple-layer corrections using some measure of mean soil temperature over the layer depth are common; and in some cases the soil water content has been determined, although rarely. Several problems with the heat flux plate method limit the accuracy of soil heat flux values. An alternative method is presented and this flux gradient method is compared with soil heat flux plate measurements. The method is based on periodic (e. g., half-hourly) water content and temperature sensing at multiple depths within the soil profile and a solution of the Fourier heat flux equation. A Fourier sine series is fit to the temperature at each depth and the temperature at the next depth below is simulated with a sine series solution of the differential heat flux equation using successive approximation of the best fit based on changing the thermal diffusivity value. The best fit thermal diffusivity value is converted to a thermal conductivity value using the soil heat capacity, which is based on the measured water content and bulk density. A statistical analysis of the many data resulting from repeated application of this method is applied to describe the thermal conductivity as a function of water content and bulk density. The soil heat flux between each pair of temperature measurement depths is computed using the thermal conductivity function and measured water contents. The thermal gradient method of heat flux calculation compared well to values determined using heat flux plates and calorimetric correction to the soil surface; and it provided better representation of the surface spatiotemporal variation of heat flux and more accurate heat flux values. The overall method resulted in additional important knowledge including the water content dynamics in the near-surface soil profile and a soil-specific function relating thermal conductivity to soil water content and bulk density. Published by Elsevier Ltd.
C1 [Evett, Steven R.; Colaizzi, Paul D.; Schwartz, Robert C.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
[Agam, Nurit] Agr Res Org, Gilat Res Ctr, IL-85280 Rural Delivery, Israel.
[Kustas, William P.] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
RP Evett, SR (reprint author), USDA ARS, Conservat & Prod Res Lab, PO Drawer 10, Bushland, TX 79012 USA.
EM steve.evett@ars.usda.gov; nurit.agam@gmail.com;
bill.kustas@ars.usda.gov; paul.colaizzi@ars.usda.gov;
robert.schwartz@ars.usda.gov
RI Kustas, William/C-2063-2015; Agam, Nurit/E-1836-2013
OI Agam, Nurit/0000-0002-8921-6179
FU Ogallala Aquifer Program
FX This research was supported in part by the Ogallala Aquifer Program, a
consortium between USDA-Agricultural Research Service, Kansas State
University, Texas AgriLife Research, Texas AgriLife Extension Service,
Texas Tech University, and West Texas A&M University.
NR 29
TC 11
Z9 12
U1 1
U2 63
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 41
EP 54
DI 10.1016/j.advwatres.2012.04.012
PG 14
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300005
ER
PT J
AU Cosh, MH
Evett, SR
McKee, L
AF Cosh, Michael H.
Evett, Steven R.
McKee, Lynn
TI Surface soil water content spatial organization within irrigated and
non-irrigated agricultural fields
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Soil water content; Network analysis; Temporal stability
ID SGP97 HYDROLOGY EXPERIMENT; MOISTURE VARIABILITY; CALIBRATION;
RADIOMETER; CLIMATE; PROBE; TIME
AB Understanding soil water content, theta, variability is important for monitoring and modeling of land surface processes as well as land and water management practices. With regards to in situ theta probes, it is sometimes assumed that a single local measurement can represent the larger domain, mostly for practical reasons. But there is a substantial amount of variability in theta at the field scale. As part of the Bushland Evapotranspiration and Agricultural Remote Sensing Experiment 2008 (BEAREX08), a high-density sensor network and intensive observational periods were developed to fully describe the theta conditions at the surface on the field scale, in support of the hydro-meteorological measurements being collected. A total of 20 theta stations were distributed over an irrigated and a non-irrigated field (similar to 10 ha each) and high-density (similar to every 5 cm) transects were measured for a high-detailed record. The network was able to provide large scale estimates of theta with an accuracy (root mean square error, RMSE) of 0.035 m(3)/m(3). The network was temporally stable with the exception being immediately during and after irrigation events. Irrigation caused significant increases in coefficients of variation due to the length of time (8-12 h) necessary to irrigate the entire field. The spatial distribution of surface theta was significantly affected by the row structure of the cotton plants, which was North-South in the field where transect measurements were made with a row spacing of 76 cm. At scales <35 cm (approximately half the row spacing), the distribution was correlated in the East-West direction. For scales larger than 35 cm in the East-West direction the correlation decreased, but was still present. In the North-South direction this discontinuity was not present, and theta followed a power law distribution. Published by Elsevier Ltd.
C1 [Cosh, Michael H.; McKee, Lynn] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD USA.
[Evett, Steven R.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
RP Cosh, MH (reprint author), USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD USA.
EM Michael.Cosh@ars.usda.gov
RI Cosh, MIchael/A-8858-2015
OI Cosh, MIchael/0000-0003-4776-1918
NR 26
TC 9
Z9 9
U1 5
U2 38
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 55
EP 61
DI 10.1016/j.advwatres.2012.07.009
PG 7
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300006
ER
PT J
AU Alfieri, JG
Kustas, WP
Prueger, JH
Hipps, LE
Evett, SR
Basara, JB
Neale, CMU
French, AN
Colaizzi, P
Agam, N
Cosh, MH
Chavez, JL
Howell, TA
AF Alfieri, Joseph G.
Kustas, William P.
Prueger, John H.
Hipps, Lawrence E.
Evett, Steven R.
Basara, Jeffrey B.
Neale, Christopher M. U.
French, Andrew N.
Colaizzi, Paul
Agam, Nurit
Cosh, Michael H.
Chavez, Jose L.
Howell, Terry A.
TI On the discrepancy between eddy covariance and lysimetry-based surface
flux measurements under strongly advective conditions
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Surface energy flux; Evapotranspiration; Advection; Eddy covariance;
Lysimetry; Surface heterogeneity
ID WATER-USE EFFICIENCY; SOIL HEAT-FLUX; ENERGY-BALANCE; LOCAL ADVECTION;
DOWNWIND EVOLUTION; EXPERIMENT EBEX-2000; MEASUREMENT ACCURACY;
FOOTPRINT ESTIMATION; POPULATION-GROWTH; NET RADIOMETERS
AB Discrepancies can arise among surface flux measurements collected using disparate techniques due to differences in both the instrumentation and theoretical underpinnings of the different measurement methods. Using data collected primarily within a pair of irrigated cotton fields as a part of the 2008 Bush-land Evapotranspiration and Remote Sensing Experiment (BEAREX08), flux measurements collected with two commonly-used methods, eddy covariance (EC) and lysimetry (LY), were compared and substantial differences were found. Daytime mean differences in the flux measurements from the two techniques could be in excess of 200 W m(-2) under strongly advective conditions. Three causes for this disparity were found: (i) the failure of the eddy covariance systems to fully balance the surface energy budget, (ii) flux divergence due to the local advection of warm, dry air over the irrigated cotton fields, and (iii) the failure of lysimeters to accurately represent the surface properties of the cotton fields as a whole. Regardless of the underlying cause, the discrepancy among the flux measurements underscores the difficulty in collecting these measurements under strongly advective conditions. It also raises awareness of the uncertainty associated with in situ micrometeorological measurements and the need for caution when using such data for model validation or as observational evidence to definitively support or refute scientific hypotheses. Published by Elsevier Ltd.
C1 [Alfieri, Joseph G.] USDA ARS, Hydrol & Remote Sensing Lab, BARC W, Beltsville, MD 20705 USA.
[Prueger, John H.] USDA ARS, Natl Lab Agr & Environm, Ames, IA 50011 USA.
[Hipps, Lawrence E.] Utah State Univ, Dept Plants Soils & Biometeorol, Logan, UT 84322 USA.
[Evett, Steven R.; Colaizzi, Paul; Howell, Terry A.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
[Basara, Jeffrey B.] Univ Oklahoma, Norman, OK 73072 USA.
[Neale, Christopher M. U.] Utah State Univ, Dept Civil & Environm Engn, Logan, UT 84322 USA.
[French, Andrew N.] USDA ARS, Arid Land Agr Res Ctr, Maricopa, AZ 85238 USA.
[Agam, Nurit] Agr Res Org, Gilat Res Ctr, IL-85280 Rural Delivery Negev, Israel.
[Chavez, Jose L.] Colorado State Univ, Dept Civil & Environm Engn, Ft Collins, CO 80523 USA.
RP Alfieri, JG (reprint author), USDA ARS, Hydrol & Remote Sensing Lab, BARC W, Bldg 007,Rm 104,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM joe.alfieri@ars.usda.gov
RI Basara, Jeffrey/A-4907-2008; Cosh, MIchael/A-8858-2015; Kustas,
William/C-2063-2015; Neale, Christopher/P-3676-2015; Agam,
Nurit/E-1836-2013;
OI Basara, Jeffrey/0000-0002-2096-6844; Cosh, MIchael/0000-0003-4776-1918;
Neale, Christopher/0000-0002-7199-6410; Agam, Nurit/0000-0002-8921-6179;
Hipps, Lawrence/0000-0002-7658-8571
NR 86
TC 32
Z9 33
U1 2
U2 35
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 62
EP 78
DI 10.1016/j.advwatres.2012.07.008
PG 17
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300007
ER
PT J
AU Evett, SR
Schwartz, RC
Howell, TA
Baumhardt, RL
Copeland, KS
AF Evett, Steven R.
Schwartz, Robert C.
Howell, Terry A.
Baumhardt, R. Louis
Copeland, Karen S.
TI Can weighing lysimeter ET represent surrounding field ET well enough to
test flux station measurements of daily and sub-daily ET?
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Evapotranspiration; Weighing lysimeter; Soil water balance; Neutron
probe; Eddy covariance
ID HYDRAULIC-PROPERTIES; NEUTRON PROBE; SOIL; EVAPOTRANSPIRATION;
CONDUCTIVITY
AB Weighing lysimeters and neutron probes (NP) are both used to determine the change in soil water storage needed to solve for evapotranspiration (ET) using the soil water balance equation. We compared irrigated cotton ET determined using two large (3 x 3 x 2.4-m deep) weighing lysimeters and eight NP soil water profiles located outside the lysimeters in cotton fields during the BEAREX08 field campaign (see [16] Evett et al., 2012). The objectives were to (i) determine if lysimeter-based ET fluxes were representative of those from the fields, designated NE and SE, in which the lysimeters were centered, and (ii) investigate different methods of computing the soil water balance using NP data. Field fluxes were determined from the soil water balance using neutron probe measurements of change in profile water content storage. Fluxes of ET from the SE lysimeter were representative of those from the field throughout the season and can be used with reasonable certainty for comparisons of ET fluxes and energy balance closure derived from Bowen ratio (BR) and eddy covariance (EC) measurements whose footprints lay in the SE field. Comparisons of ET fluxes from EC and BR systems to those from the NE lysimeter should consider that NE lysimeter fluxes were up to 18% larger than those from the NE field during the period of rapid vegetative growth. This was due to plants on the lysimeter having greater height and width than those in the field. Nevertheless, the data from this and companion studies documents substantial underestimation of crop ET by EC stations under the conditions of BEAREX08. Comparison of zero flux plane (ZFP) and simple soil water balance methods of calculating ET from NP data showed them to be equivalent in this study; and for the ZFP method, the depth of the control volume should be determined by the depth at which the hydraulic gradient reverses, not by the depth of calculated minimum flux. If supported by a sufficiently dense and widespread network of deep soil water balance based estimates of ET in the surrounding patch and by ancillary measurements of crop stand and growth within the lysimeter and in the surrounding patch, a weighing lysimeter can provide accurate ET ground truth for comparisons with ET estimated using flux stations or ET calculated using satellite imagery. It must be emphasized that the water balance measurements must include soil profile water content measurements to well below (e. g., 0.5 to 1 m below) the root zone in order to close the water balance. Published by Elsevier Ltd.
C1 [Evett, Steven R.; Schwartz, Robert C.; Howell, Terry A.; Baumhardt, R. Louis; Copeland, Karen S.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
RP Evett, SR (reprint author), USDA ARS, Conservat & Prod Res Lab, PO Drawer 10, Bushland, TX 79012 USA.
EM steve.evett@ars.usda.gov; robert.schwartz@ars.usda.gov;
terry.howell@ars.usda.gov; r.louis.baumhardt@ars.usda.gov;
karen.copeland@ars.usda.gov
FU USDA-ARS Ogallala Aquifer Program
FX We gratefully acknowledge support from the USDA-ARS Ogallala Aquifer
Program, a consortium between USDA-Agricultural Research Service, Kansas
State University, Texas AgriLife Research, Texas AgriLife Extension
Service, Texas Tech University, and West Texas A&M University; and the
dedicated support of Mr. Brice B. Ruthardt, Biological Science
Technician, in lysimeter and soil water sensor operations.
NR 28
TC 29
Z9 34
U1 3
U2 40
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 79
EP 90
DI 10.1016/j.advwatres.2012.07.023
PG 12
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300008
ER
PT J
AU French, AN
Alfieri, JG
Kustas, WP
Prueger, JH
Hipps, LE
Chavez, JL
Evett, SR
Howell, TA
Gowda, PH
Hunsaker, DJ
Thorp, KR
AF French, Andrew N.
Alfieri, Joseph G.
Kustas, William P.
Prueger, John H.
Hipps, Lawrence E.
Chavez, Jose L.
Evett, Steven R.
Howell, Terry A.
Gowda, Prasanna H.
Hunsaker, Douglas J.
Thorp, Kelly R.
TI Estimation of surface energy fluxes using surface renewal and flux
variance techniques over an advective irrigated agricultural site
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Surface renewal; Flux variance; Advection; Cotton heat flux; Irrigated
cotton; BEAREX08
ID SENSIBLE HEAT-FLUX; TURBULENT BOUNDARY-LAYERS; EDDY COVARIANCE; BALANCE
CLOSURE; CARBON-DIOXIDE; PINE FOREST; WATER-VAPOR; TEMPERATURE; LATENT;
DENSITY
AB Estimation of surface energy fluxes over irrigated agriculture is needed to monitor crop water use. Measurements are commonly done using well-established techniques such as eddy covariance (EC) and weighing lysimetry, but implementing these to collect spatially distributed observations is complex and costly. Two techniques that could simplify flux observations are the surface renewal (SR) and flux variance (FV) approaches. These methods infer sensible heat fluxes from high frequency observations of near surface air temperatures using low cost thermocouples. In combination with net radiation and soil heat flux observations, surface renewal and flux variance observations produce latent heat fluxes as a residual of the surface energy balance. The viability of these techniques was tested in a strongly advective irrigated agricultural setting as part of the Bushland Evapotranspiration and Agricultural Remote Sensing Experiment in 2008 (BEAREX08). Using 20 Hz air temperature data collected between 12 June and 13 August from two cotton field sites and one senescent/dormant grass site, sensible heat flux estimates were computed. Surface flux conditions ranged widely and include episodes of latent heat fluxes exceeding net radiation. Overall, flux estimates from SR and FV were similar to simultaneously obtained eddy covariance observations on most days. During strong advection neither approach closely agreed with EC data, although the surface renewal technique more reliably estimated the correct sign of sensible heat fluxes. Both techniques were found to offer flux estimates comparable to EC data, though with different advantages. SR is self-contained, requiring no additional instrumentation beyond air temperature equipment. SR correctly diagnosed the sign of sensible heat fluxes and produced better estimates at early morning and late afternoon times than FV, although these were achieved after lag time selection using EC data for calibration. FV, by contrast, required wind speed observations, as well as thermal infrared data to resolve heat flux directions. However, using nominal parameters and no local calibration, FV produced mid-day estimates equal to or better than SR. These outcomes indicate that flux data with accuracies approaching EC capabilities is feasible with the potential for reduced deployment complexity and cost. Published by Elsevier Ltd.
C1 [French, Andrew N.; Hunsaker, Douglas J.; Thorp, Kelly R.] US ALARC, Maricopa, AZ 85138 USA.
[Alfieri, Joseph G.; Kustas, William P.] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
[Prueger, John H.] USDA ARS, Natl Lab Agr & Environm, Ames, IA USA.
[Hipps, Lawrence E.] Utah State Univ, Dept Plants Soils & Biometeorol, Logan, UT 84322 USA.
[Chavez, Jose L.] Colorado State Univ, Dept Civil & Environm Engn, Ft Collins, CO 80523 USA.
[Evett, Steven R.; Howell, Terry A.; Gowda, Prasanna H.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
RP French, AN (reprint author), US ALARC, 21881 N Cardon Lane, Maricopa, AZ 85138 USA.
EM andrew.french@ars.usda.gov
RI Thorp, Kelly/C-2013-2009; Kustas, William/C-2063-2015;
OI Thorp, Kelly/0000-0001-9168-875X; Hipps, Lawrence/0000-0002-7658-8571
NR 59
TC 8
Z9 8
U1 0
U2 18
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
EI 1872-9657
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 91
EP 105
DI 10.1016/j.advwatres.2012.07.007
PG 15
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300009
ER
PT J
AU Prueger, JH
Alfieri, JG
Hipps, LE
Kustas, WP
Chavez, JL
Evett, SR
Anderson, MC
French, AN
Neale, CMU
McKee, LG
Hatfield, JL
Howell, TA
Agam, N
AF Prueger, J. H.
Alfieri, J. G.
Hipps, L. E.
Kustas, W. P.
Chavez, J. L.
Evett, S. R.
Anderson, M. C.
French, A. N.
Neale, C. M. U.
McKee, L. G.
Hatfield, J. L.
Howell, T. A.
Agam, N.
TI Patch scale turbulence over dryland and irrigated surfaces in a
semi-arid landscape under advective conditions during BEAREX08
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Surface energy flux; Turbulence; Evapotranspiration; Advection; Eddy
covariance; Surface heterogeneity
ID ATMOSPHERIC BOUNDARY-LAYER; MONIN-OBUKHOV SIMILARITY; DYNAMIC SUBLAYER;
WAVELET ANALYSIS; ENERGY-BALANCE; WATER-VAPOR; PART I; SPECTRA; HEAT;
FLUX
AB Quantifying turbulent fluxes of heat and water vapor over heterogeneous surfaces presents unique challenges. For example, in many arid and semi-arid regions, parcels of irrigated cropland are juxtaposed with hot, dry surfaces. Contrasting surface conditions can result in the advection of warm dry air over an irrigated crop surface where it increases the water vapor deficit and, thereby, atmospheric demand. If sufficient water is available, this can significantly enhance evaporative water loss from the irrigated field. The scale and frequency of turbulent eddies over an irrigated surface during periods of strong advection is not fully understood. High frequency (20 Hz) data were acquired over irrigated cotton, wheat stubble, and rangeland fields during the 2008 growing season as part of the Bushland Evapotranspiration and Agricultural Remote Sensing Experiment (BEAREX08). Spectral analysis of momentum and scalar quantities including heat and water vapor revealed low frequency features in the turbulence structure due to the penetration of the surface boundary layer by large-scale eddies during periods of unusually strong advection. Wavelet analysis was applied to assess specific events contributing to the spatial and temporal structure of turbulent flux eddies. The analysis showed that low frequency contributions were linked to both local and regional scale advective processes. These results clearly point to a need to better understand surface energy balance exchange for heterogeneous surfaces in arid and semi-arid regions under conditions of strong local and regional advection. Published by Elsevier Ltd.
C1 [Prueger, J. H.; Hatfield, J. L.] USDA ARS, Natl Lab Agr & Environm, Ames, IA 50011 USA.
[Alfieri, J. G.; Kustas, W. P.; Anderson, M. C.; McKee, L. G.] USDA ARS, Hydrol & Remote Sensing Lab, Beltsville, MD 20705 USA.
[Hipps, L. E.; Neale, C. M. U.] Utah State Univ, Logan, UT 84322 USA.
[Evett, S. R.; Howell, T. A.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
[French, A. N.] USDA ARS, Arid Land Agr Res Ctr, Maricopa, AZ 85238 USA.
[Chavez, J. L.] Colorado State Univ, Dept Civil & Environ Engr, Ft Collins, CO 80523 USA.
[Agam, N.] Agr Res Org, Gilat Res Ctr, IL-85280 Negev, Israel.
RP Prueger, JH (reprint author), USDA ARS, Natl Lab Agr & Environm, 2150 Univ Blvd, Ames, IA 50011 USA.
EM john.prueger@ars.usda.gov
RI Anderson, Martha/C-1720-2015; Kustas, William/C-2063-2015; Neale,
Christopher/P-3676-2015; Agam, Nurit/E-1836-2013;
OI Anderson, Martha/0000-0003-0748-5525; Neale,
Christopher/0000-0002-7199-6410; Agam, Nurit/0000-0002-8921-6179; Hipps,
Lawrence/0000-0002-7658-8571
NR 52
TC 3
Z9 3
U1 1
U2 15
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 106
EP 119
DI 10.1016/j.advwatres.2012.07.014
PG 14
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300010
ER
PT J
AU Kustas, WP
Alfieri, JG
Anderson, MC
Colaizzi, PD
Prueger, JH
Evett, SR
Neale, CMU
French, AN
Hipps, LE
Chavez, JL
Copeland, KS
Howell, TA
AF Kustas, William P.
Alfieri, Joseph G.
Anderson, Martha C.
Colaizzi, Paul D.
Prueger, John H.
Evett, Steven R.
Neale, Christopher M. U.
French, Andrew N.
Hipps, Lawrence E.
Chavez, Jose L.
Copeland, Karen S.
Howell, Terry A.
TI Evaluating the two-source energy balance model using local thermal and
surface flux observations in a strongly advective irrigated agricultural
area
SO ADVANCES IN WATER RESOURCES
LA English
DT Article
DE Thermal remote sensing; Two-source energy balance modeling; Land surface
temperature; Evapotranspiration; Time differencing methods
ID SOIL HEAT-FLUX; RADIOMETRIC TEMPERATURE; NET-RADIATION; VEGETATION;
EVAPORATION; COVER; WATER; UTILITY; SMACEX; CARBON
AB Application and validation of many thermal remote sensing-based energy balance models involve the use of local meteorological inputs of incoming solar radiation, wind speed and air temperature as well as accurate land surface temperature (LST), vegetation cover and surface flux measurements. For operational applications at large scales, such local information is not routinely available. In addition, the uncertainty in LST estimates can be several degrees due to sensor calibration issues, atmospheric effects and spatial variations in surface emissivity. Time differencing techniques using multi-temporal thermal remote sensing observations have been developed to reduce errors associated with deriving the surface-air temperature gradient, particularly in complex landscapes. The Dual-Temperature-Difference (DTD) method addresses these issues by utilizing the Two-Source Energy Balance (TSEB) model of Norman et al. (1995) [1], and is a relatively simple scheme requiring meteorological input from standard synoptic weather station networks or mesoscale modeling. A comparison of the TSEB and DTD schemes is performed using LST and flux observations from eddy covariance (EC) flux towers and large weighing lysimeters (LYs) in irrigated cotton fields collected during BEAREX08, a large-scale field experiment conducted in the semi-arid climate of the Texas High Plains as described by Evett et al. (2012) [2]. Model output of the energy fluxes (i.e., net radiation, soil heat flux, sensible and latent heat flux) generated with DTD and TSEB using local and remote meteorological observations are compared with EC and LY observations. The DTD method is found to be significantly more robust in flux estimation compared to the TSEB using the remote meteorological observations. However, discrepancies between model and measured fluxes are also found to be significantly affected by the local inputs of LST and vegetation cover and the representativeness of the remote sensing observations with the local flux measurement footprint. Published by Elsevier Ltd.
C1 [Kustas, William P.; Alfieri, Joseph G.; Anderson, Martha C.] ARS, USDA, Hydrol & Remote Sensing Lab, BARC W, Beltsville, MD 20705 USA.
[Colaizzi, Paul D.; Evett, Steven R.; Copeland, Karen S.; Howell, Terry A.] USDA ARS, Conservat & Prod Res Lab, Bushland, TX 79012 USA.
[Prueger, John H.] USDA ARS, Natl Lab Agr & Environm, Ames, IA 50011 USA.
[Hipps, Lawrence E.] Utah State Univ, Plants Soils & Climate Depart, Logan, UT 84322 USA.
[French, Andrew N.] USDA ARS, Arid Land Agr Res Ctr, Maricopa, AZ 85238 USA.
[Chavez, Jose L.] Colorado State Univ, Dept Civil & Environ Engr, Ft Collins, CO 80523 USA.
RP Kustas, WP (reprint author), ARS, USDA, Hydrol & Remote Sensing Lab, BARC W, Bldg 007,Rm 104,10300 Baltimore Ave, Beltsville, MD 20705 USA.
EM Bill.Kustas@ars.usda.gov
RI Anderson, Martha/C-1720-2015; Kustas, William/C-2063-2015; Neale,
Christopher/P-3676-2015;
OI Anderson, Martha/0000-0003-0748-5525; Neale,
Christopher/0000-0002-7199-6410; Hipps, Lawrence/0000-0002-7658-8571
NR 40
TC 23
Z9 23
U1 2
U2 43
PU ELSEVIER SCI LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND
SN 0309-1708
J9 ADV WATER RESOUR
JI Adv. Water Resour.
PD DEC
PY 2012
VL 50
BP 120
EP 133
DI 10.1016/j.advwatres.2012.07.005
PG 14
WC Water Resources
SC Water Resources
GA 046EC
UT WOS:000311747300011
ER
EF