FN Thomson Reuters Web of Science™
VR 1.0
PT J
AU Zdeborova, L
   Krzakala, F
AF Zdeborova, Lenka
   Krzakala, Florent
TI QUIET PLANTING IN THE LOCKED CONSTRAINT SATISFACTION PROBLEMS
SO SIAM JOURNAL ON DISCRETE MATHEMATICS
LA English
DT Article
DE constraint satisfaction problems; planted random ensemble; belief
   propagation; reconstruction on trees; instances with a unique satisfying
   assignment
ID SATISFIABILITY PROBLEMS; GLASS-TRANSITION; TREES; RECONSTRUCTION;
   ALGORITHM; GRAPHS; CODES; MODEL
AB We study the planted ensemble of locked constraint satisfaction problems. We describe the connection between the random and planted ensembles. The use of the cavity method is combined with arguments from reconstruction on trees and the first and second moment considerations. Our main result is the location of the hard region in the planted ensemble. In a part of that hard region, instances have with high probability a single satisfying assignment.
C1 [Zdeborova, Lenka; Krzakala, Florent] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
   [Zdeborova, Lenka; Krzakala, Florent] Los Alamos Natl Lab, Ctr Nonlinear Studies, Los Alamos, NM 87545 USA.
RP Zdeborova, L (reprint author), Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
EM lenka.zdeborova@cea.fr; fk@espci.fr
RI Krzakala, Florent/D-8846-2012; Zdeborova, Lenka/B-9999-2014
NR 43
TC 8
Z9 8
U1 0
U2 0
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 0895-4801
EI 1095-7146
J9 SIAM J DISCRETE MATH
JI SIAM Discret. Math.
PY 2011
VL 25
IS 2
BP 750
EP 770
DI 10.1137/090750755
PG 21
WC Mathematics, Applied
SC Mathematics
GA 786JH
UT WOS:000292302000023
ER

PT J
AU Kudekar, S
   Macris, N
AF Kudekar, Shrinivas
   Macris, Nicolas
TI DECAY OF CORRELATIONS FOR SPARSE GRAPH ERROR CORRECTING CODES
SO SIAM JOURNAL ON DISCRETE MATHEMATICS
LA English
DT Article
DE graphical codes; decay of correlations; belief propagation; cluster
   expansions; channel communication
ID BOUNDS; MODEL
AB The subject of this paper is transmission over a general class of binary-input memoryless symmetric channels using error correcting codes based on sparse graphs, namely, low-density generator-matrix and low-density parity-check codes. The optimal (or ideal) decoder based on the posterior measure over the code-bits and its relationship to the suboptimal belief propagation decoder are investigated. We consider the correlation (or covariance) between two code-bits, averaged over the noise realizations, as a function of the graph distance for the optimal decoder. Our main result is that this correlation decays exponentially fast for given low-density generator-matrix codes and a high enough noise parameter and also for given low-density parity-check codes and a low enough noise parameter. This has many consequences. Appropriate performance curves-called generalized extrinsic information transfer (GEXIT) functions-of the belief propagation and optimal decoders match in high/low noise regimes. This means that in high/low noise regimes the performance curves of the optimal decoder can be computed by density evolution. Another interpretation is that the replica predictions of spin-glass theory are exact. Our methods are rather general and use cluster expansions first developed in the context of mathematical statistical mechanics.
C1 [Kudekar, Shrinivas] Los Alamos Natl Lab, New Mexico Consortium, Los Alamos, NM 87545 USA.
   [Kudekar, Shrinivas] Los Alamos Natl Lab, Ctr Nonlinear Studies, Los Alamos, NM 87545 USA.
   [Macris, Nicolas] Ecole Polytech Fed Lausanne, Commun Theory Lab, Sch Comp & Commun Sci, CH-1015 Lausanne, Switzerland.
RP Kudekar, S (reprint author), Los Alamos Natl Lab, New Mexico Consortium, Los Alamos, NM 87545 USA.
EM skudekar@lanl.gov; nicolas.macris@epfl.ch
FU Swiss National Foundation [200020-113412]
FX New Mexico Consortium and Center for Nonlinear Studies, Los Alamos
   National Laboratory, Los Alamos, NM (skudekar@lanl.gov). This author's
   work has been supported by a grant of the Swiss National Foundation
   200020-113412.
NR 31
TC 5
Z9 5
U1 0
U2 1
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 0895-4801
J9 SIAM J DISCRETE MATH
JI SIAM Discret. Math.
PY 2011
VL 25
IS 2
BP 956
EP 988
DI 10.1137/090751827
PG 33
WC Mathematics, Applied
SC Mathematics
GA 786JH
UT WOS:000292302000032
ER

PT J
AU Chandrasekaran, V
   Chertkov, M
   Gamarnik, D
   Shah, D
   Shin, J
AF Chandrasekaran, Venkat
   Chertkov, Misha
   Gamarnik, David
   Shah, Devavrat
   Shin, Jinwoo
TI COUNTING INDEPENDENT SETS USING THE BETHE APPROXIMATION
SO SIAM JOURNAL ON DISCRETE MATHEMATICS
LA English
DT Article
DE Bethe free energy; independent set; belief propagation; loop series
ID RANDOM REGULAR GRAPHS; ASYMPTOTIC-DISTRIBUTION; MARKOV-CHAINS; CYCLES
AB We consider the #P-complete problem of counting the number of independent sets in a given graph. Our interest is in understanding the effectiveness of the popular belief propagation (BP) heuristic. BP is a simple iterative algorithm that is known to have at least one fixed point, where each fixed point corresponds to a stationary point of the Bethe free energy (introduced by Yedidia, Freeman, and Weiss [IEEE Trans. Inform. Theory, 51 (2004), pp. 2282-2312] in recognition of Bethe's earlier work in 1935). The evaluation of the Bethe free energy at such a stationary point (or BP fixed point) leads to the Bethe approximation for the number of independent sets of the given graph. BP is not known to converge in general, nor is an efficient, convergent procedure for finding stationary points of the Bethe free energy known. Furthermore, the effectiveness of the Bethe approximation is not well understood. As the first result of this paper we propose a BP-like algorithm that always converges to a stationary point of the Bethe free energy for any graph for the independent set problem. This procedure finds an e-approximate stationary point in O(n(2)d(4)2(d)epsilon(-4)log(3)(n epsilon(-1))) iterations for a graph of n nodes with max-degree d. We study the quality of the resulting Bethe approximation using the recently developed "loop series" framework of Chertkov and Chernyak [J. Stat. Mech. Theory Exp., 6 (2006), P06009]. As this characterization is applicable only for exact stationary points of the Bethe free energy, we provide a slightly modified characterization that holds for e-approximate stationary points. We establish that for any graph on n nodes with max-degree d and girth larger than 8d log(2) n, the multiplicative error between the number of independent sets and the Bethe approximation decays as 1 + O(n(-gamma)) for some gamma > 0. This provides a deterministic counting algorithm that leads to strictly different results compared to a recent result of Weitz [in Proceedings of the Thirty-Eighth Annual ACM Symposium on Theory of Computing, ACM Press, New York, 2006, pp. 140-149]. Finally, as a consequence of our analysis we prove that the Bethe approximation is exceedingly good for a random 3-regular graph conditioned on the shortest cycle cover conjecture of Alon and Tarsi [SIAM J. Algebr. Discrete Methods, 6 (1985), pp. 345-350] being true.
C1 [Chandrasekaran, Venkat; Shah, Devavrat] MIT, Lab Informat & Decis Syst, Dept EECS, Cambridge, MA 02139 USA.
   [Chertkov, Misha] Los Alamos Natl Lab, Ctr Nonlinear Studies, Los Alamos, NM 87545 USA.
   [Chertkov, Misha] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
   [Chertkov, Misha] New Mexico Consortium, Los Alamos, NM 87544 USA.
   [Gamarnik, David] MIT, Ctr Operat Res, Cambridge, MA 02139 USA.
   [Gamarnik, David] MIT, Alfred P Sloan Sch Management, Cambridge, MA 02139 USA.
   [Shin, Jinwoo] Georgia Inst Technol, Algorithms & Randomness Ctr, Atlanta, GA 30332 USA.
RP Chandrasekaran, V (reprint author), MIT, Lab Informat & Decis Syst, Dept EECS, 77 Massachusetts Ave, Cambridge, MA 02139 USA.
EM venkatc@mit.edu; chertkov@lanl.gov; gamarnik@mit.edu; devavrat@mit.edu;
   jshin72@cc.gatech.edu
RI Shin, Jinwoo/M-5389-2013; Chertkov, Michael/O-8828-2015; 
OI Chertkov, Michael/0000-0002-6758-515X
FU NSF EMT/MISC [0829893]
FX Received by the editors August 10, 2009; accepted for publication (in
   revised form) July 16, 2010; published electronically July 1, 2011. This
   work was supported in part by NSF EMT/MISC collaborative project
   0829893.
NR 21
TC 8
Z9 8
U1 0
U2 2
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 0895-4801
EI 1095-7146
J9 SIAM J DISCRETE MATH
JI SIAM Discret. Math.
PY 2011
VL 25
IS 2
BP 1012
EP 1034
DI 10.1137/090767145
PG 23
WC Mathematics, Applied
SC Mathematics
GA 786JH
UT WOS:000292302000034
ER

PT J
AU Kolda, TG
   Mayo, JR
AF Kolda, Tamara G.
   Mayo, Jackson R.
TI SHIFTED POWER METHOD FOR COMPUTING TENSOR EIGENPAIRS
SO SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS
LA English
DT Article
DE tensor eigenvalues; E-eigenpairs; Z-eigenpairs; l(2)-eigenpairs; rank-1
   approximation; symmetric higher-order power method (S-HOPM); shifted
   symmetric higher-order power method (SS-HOPM)
ID NONNEGATIVE TENSOR; LARGEST EIGENVALUE; SYMMETRIC TENSOR; APPROXIMATION;
   RANK-1
AB Recent work on eigenvalues and eigenvectors for tensors of order m >= 3 has been motivated by applications in blind source separation, magnetic resonance imaging, molecular conformation, and more. In this paper, we consider methods for computing real symmetric-tensor eigenpairs of the form Ax(m-1) = lambda x subject to parallel to x parallel to = 1, which is closely related to optimal rank-1 approximation of a symmetric tensor. Our contribution is a shifted symmetric higher-order power method (SS-HOPM), which we show is guaranteed to converge to a tensor eigenpair. SS-HOPM can be viewed as a generalization of the power iteration method for matrices or of the symmetric higher-order power method. Additionally, using fixed point analysis, we can characterize exactly which eigenpairs can and cannot be found by the method. Numerical examples are presented, including examples from an extension of the method to finding complex eigenpairs.
C1 [Kolda, Tamara G.; Mayo, Jackson R.] Sandia Natl Labs, Livermore, CA 94551 USA.
RP Kolda, TG (reprint author), Sandia Natl Labs, Livermore, CA 94551 USA.
EM tgkolda@sandia.gov; jmayo@sandia.gov
RI Kolda, Tamara/B-1628-2009
OI Kolda, Tamara/0000-0003-4176-2493
FU U.S. Department of Energy; Laboratory Directed Research & Development
   (LDRD) at Sandia National Laboratories; U.S. Department of Energy's
   National Nuclear Security Administration [DE-AC04-94AL85000]
FX This work was funded by the applied mathematics program at the U.S.
   Department of Energy and by an Excellence Award from the Laboratory
   Directed Research & Development (LDRD) program at Sandia National
   Laboratories. Sandia National Laboratories is a multiprogram laboratory
   operated by Sandia Corporation, a wholly owned subsidiary of Lockheed
   Martin Corporation, for the U.S. Department of Energy's National Nuclear
   Security Administration under contract DE-AC04-94AL85000. The U.S.
   Government retains a nonexclusive, royalty-free license to publish or
   reproduce the published form of this contribution, or allow others to do
   so, for U.S. Government purposes. Copyright is owned by SIAM to the
   extent not limited by these rights.
NR 27
TC 70
Z9 77
U1 0
U2 7
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 0895-4798
J9 SIAM J MATRIX ANAL A
JI SIAM J. Matrix Anal. Appl.
PY 2011
VL 32
IS 4
BP 1095
EP 1124
DI 10.1137/100801482
PG 30
WC Mathematics, Applied
SC Mathematics
GA 866IG
UT WOS:000298373400002
ER

PT J
AU Chen, J
   Anitescu, M
   Saad, Y
AF Chen, Jie
   Anitescu, Mihai
   Saad, Yousef
TI COMPUTING f(A)b VIA LEAST SQUARES POLYNOMIAL APPROXIMATIONS
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE matrix function; least squares polynomials; Gaussian process; sampling
ID KRYLOV SUBSPACE METHOD; MATRIX EXPONENTIAL OPERATOR; ITERATIVE SOLUTION;
   COMPUTATION; EQUATIONS; SYSTEMS
AB Given a certain function f, various methods have been proposed in the past for addressing the important problem of computing the matrix-vector product f(A)b without explicitly computing the matrix f(A). Such methods were typically developed for a specific function f, a common case being that of the exponential. This paper discusses a procedure based on least squares polynomials that can, in principle, be applied to any (continuous) function f. The idea is to start by approximating the function by a spline of a desired accuracy. Then a particular definition of the function inner product is invoked that facilitates the computation of the least squares polynomial to this spline function. Since the function is approximated by a polynomial, the matrix A is referenced only through a matrix-vector multiplication. In addition, the choice of the inner product makes it possible to avoid numerical integration. As an important application, we consider the case when f(t) = root t and A is a sparse, symmetric positive-definite matrix, which arises in sampling from a Gaussian process distribution. The covariance matrix of the distribution is defined by using a covariance function that has a compact support, at a very large number of sites that are on a regular or irregular grid. We derive error bounds and show extensive numerical results to illustrate the effectiveness of the proposed technique.
C1 [Chen, Jie; Saad, Yousef] Univ Minnesota Twin Cities, Dept Comp Sci & Engn, Minneapolis, MN 55455 USA.
   [Anitescu, Mihai] Argonne Natl Lab, Div Math & Comp Sci, Argonne, IL 60439 USA.
RP Chen, J (reprint author), Univ Minnesota Twin Cities, Dept Comp Sci & Engn, Minneapolis, MN 55455 USA.
EM jchen@cs.umn.edu; anitescu@mcs.anl.gov; saad@cs.umn.edu
FU NSF [DMS-0810938]; DOE [DE-FG-08ER25841]; University of Minnesota; U.S.
   Department of Energy [DE-AC02-06CH11357]
FX The work of these authors was supported by NSF grant DMS-0810938 and DOE
   grant DE-FG-08ER25841. The first author was supported in part by a
   University of Minnesota Doctoral Dissertation Fellowship.; The work of
   this author was supported by the U.S. Department of Energy through
   contract DE-AC02-06CH11357.
NR 48
TC 12
Z9 12
U1 0
U2 4
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
EI 1095-7197
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 1
BP 195
EP 222
DI 10.1137/090778250
PG 28
WC Mathematics, Applied
SC Mathematics
GA 726DA
UT WOS:000287697800009
ER

PT J
AU Olson, LN
   Schroder, JB
   Tuminaro, RS
AF Olson, Luke N.
   Schroder, Jacob B.
   Tuminaro, Raymond S.
TI A GENERAL INTERPOLATION STRATEGY FOR ALGEBRAIC MULTIGRID USING ENERGY
   MINIMIZATION
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE algebraic multigrid; interpolation; nonsymmetric; non-Hermitian;
   smoothed aggregation
ID AGGREGATION ALPHA-SA; SMOOTHED AGGREGATION; NONSYMMETRIC PROBLEMS;
   PRECONDITIONER; AMG
AB Algebraic multigrid methods solve sparse linear systems Ax - b by automatic construction of a multilevel hierarchy. This hierarchy is defined by grid transfer operators that must accurately capture algebraically smooth error relative to the relaxation method. We propose a methodology to improve grid transfers through energy minimization. The proposed strategy is applicable to Hermitian, non-Hermitian, definite, and indefinite problems. Each column of the grid transfer operator P is minimized in an energy-based norm while enforcing two types of constraints: a defined sparsity pattern and preservation of specified modes in the range of P. A Krylov-based strategy is used to minimize energy, which is equivalent to solving AP(j) = 0 for each column j of P, with the constraints ensuring a nontrivial solution. For the Hermitian positive definite case, a conjugate gradient (CG-)based method is utilized to construct grid transfers, while methods based on generalized minimum residual (GMRES) and CG on the normal equations (CGNR) are explored for the general case. The approach is flexible, allowing for arbitrary coarsenings, unrestricted sparsity patterns, straightforward long-distance interpolation, and general use of constraints, either user-defined or auto-generated. We conclude with numerical evidence in support of the proposed framework.
C1 [Olson, Luke N.] Univ Illinois, Siebel Ctr Comp Sci, Urbana, IL 61801 USA.
   [Schroder, Jacob B.] Univ Colorado, Dept Appl Math, Boulder, CO 80309 USA.
   [Tuminaro, Raymond S.] Sandia Natl Labs, Livermore, CA 94551 USA.
RP Olson, LN (reprint author), Univ Illinois, Siebel Ctr Comp Sci, 201 N Goodwin Ave, Urbana, IL 61801 USA.
EM lukeo@illinois.edu; jacob.schroder@colorado.edu; rstumin@sandia.gov
FU NSF [DMS-0612448]; U.S. Department of Energy [DE-AC04-94-AL85000]; DOE
   Office of Science
FX This work was partially supported by the NSF under award DMS-0612448.
   The U.S. Government retains a nonexclusive, royalty-free license to
   publish or reproduce the published form of this contribution, or allow
   others to do so, for U.S. Government purposes. Copyright is owned by
   SIAM to the extent not limited by these rights.; Sandia is a
   multiprogram laboratory operated by Sandia Corporation, a Lockheed
   Martin Company, for the U.S. Department of Energy under contract
   DE-AC04-94-AL85000. The work of this author was partially supported by
   the DOE Office of Science ASCR Program and by the ASC Program at Sandia
   National Laboratories.
NR 32
TC 13
Z9 14
U1 0
U2 8
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 2
BP 966
EP 991
DI 10.1137/100803031
PG 26
WC Mathematics, Applied
SC Mathematics
GA 755XL
UT WOS:000289973500023
ER

PT J
AU Sonday, BE
   Berry, RD
   Najm, HN
   Debusschere, BJ
AF Sonday, Benjamin E.
   Berry, Robert D.
   Najm, Habib N.
   Debusschere, Bert J.
TI EIGENVALUES OF THE JACOBIAN OF A GALERKIN-PROJECTED UNCERTAIN ODE SYSTEM
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE ordinary differential equation; uncertainty quantification; polynomial
   chaos; stochastic Jacobian; eigenvalue
ID POLYNOMIAL CHAOS; DIFFERENTIAL-EQUATIONS; ORTHOGONAL POLYNOMIALS;
   TOEPLITZ MATRICES; FINITE-ELEMENTS; CSP; MODELS; REPRESENTATIONS;
   PROPAGATION; MANIFOLDS
AB Projection onto polynomial chaos (PC) basis functions is often used to reformulate a system of ordinary differential equations (ODEs) with uncertain parameters and initial conditions as a deterministic ODE system that describes the evolution of the PC modes. The deterministic Jacobian of this projected system is different and typically much larger than the random Jacobian of the original ODE system. This paper shows that the location of the eigenvalues of the projected Jacobian is largely determined by the eigenvalues of the original Jacobian, regardless of PC order or choice of orthogonal polynomials. Specifically, the eigenvalues of the projected Jacobian always lie in the convex hull of the numerical range of the Jacobian of the original system.
C1 [Sonday, Benjamin E.] Princeton Univ, Program Appl & Computat Math, Princeton, NJ 08544 USA.
   [Berry, Robert D.; Najm, Habib N.; Debusschere, Bert J.] Sandia Natl Labs, Combust Res Facil, Livermore, CA 94551 USA.
RP Sonday, BE (reprint author), Princeton Univ, Program Appl & Computat Math, Fine Hall,Washington Rd, Princeton, NJ 08544 USA.
EM bsonday@math.princeton.edu; rdberry@sandia.gov; hnnajm@sandia.gov;
   bjdebus@sandia.gov
FU DOE [DE-FG02-97ER25308]; Sandia Corporation, a Lockheed Martin Company
   [DE-AC04-94-AL85000]; U.S. Department of Energy (DOE), Office of
   Advanced Scientific Computing Research (ASCR); DOE Office of Basic
   Energy Sciences (BES) Division of Chemical Sciences, Geosciences, and
   Biosciences
FX The Program in Applied and Computational Mathematics, Princeton
   University, Fine Hall, Washington Road, Princeton, NJ 08544-1000
   (bsonday@math.princeton.edu). This author was supported by DOE
   Computational Science Graduate Fellowship, provided under grant
   DE-FG02-97ER25308.; Combustion Research Facility, Sandia National
   Laboratories, 7011 East Avenue, Livermore, CA 94551-9610
   (rdberry@sandia.gov, hnnajm@sandia.gov, bjdebus@sandia.gov). Sandia
   National Laboratories is a multiprogram laboratory operated by Sandia
   Corporation, a Lockheed Martin Company, for the U.S. Department of
   Energy under contract DE-AC04-94-AL85000. These authors were supported
   by the U.S. Department of Energy (DOE), Office of Advanced Scientific
   Computing Research (ASCR), Applied Mathematics program, 2009 American
   Recovery and Reinvestment Act, and by the DOE Office of Basic Energy
   Sciences (BES) Division of Chemical Sciences, Geosciences, and
   Biosciences.
NR 37
TC 9
Z9 9
U1 0
U2 2
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 3
BP 1212
EP 1233
DI 10.1137/100785922
PG 22
WC Mathematics, Applied
SC Mathematics
GA 782RN
UT WOS:000292027900008
ER

PT J
AU Butler, T
   Dawson, C
   Wildey, T
AF Butler, T.
   Dawson, C.
   Wildey, T.
TI A POSTERIORI ERROR ANALYSIS OF STOCHASTIC DIFFERENTIAL EQUATIONS USING
   POLYNOMIAL CHAOS EXPANSIONS
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE a posteriori error analysis; adjoint problem; polynomial chaos;
   stochastic spectral methods
ID PROPAGATION; UNCERTAINTY; SCHEMES
AB We develop computable a posteriori error estimates for linear functionals of a solution to a general nonlinear stochastic differential equation with random model/source parameters. These error estimates are based on a variational analysis applied to stochastic Galerkin methods for forward and adjoint problems. The result is a representation for the error estimate as a polynomial in the random model/source parameter. The advantage of this method is that we use polynomial chaos representations for the forward and adjoint systems to cheaply produce error estimates by simple evaluation of a polynomial. By comparison, the typical method of producing such estimates requires repeated forward/adjoint solves for each new choice of random parameter. We present numerical examples showing that there is excellent agreement between these methods.
C1 [Butler, T.; Dawson, C.] Univ Texas Austin, ICES, Austin, TX 78712 USA.
   [Wildey, T.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
RP Butler, T (reprint author), Univ Texas Austin, ICES, Austin, TX 78712 USA.
EM tbutler@ices.utexas.edu; clint@ices.utexas.edu; tmwilde@sandia.gov
RI Butler, Troy/K-8307-2015
FU King Abdullah University of Science and Technology (KAUST); Sandia
   Corporation, a wholly owned subsidiary of Lockheed Martin Corporation
   [DE-AC04-94-AL85000]; NSF [DMS 0618679]
FX Submitted to the journal's Methods and Algorithms for Scientific
   Computing section May 18, 2010; accepted for publication (in revised
   form) March 2, 2011; published electronically June 7, 2011. This work
   was made possible with funding from the King Abdullah University of
   Science and Technology (KAUST).; Sandia National Labs, Albuquerque, NM
   87185 (tmwilde@sandia.gov). Sandia is a multiprogram laboratory operated
   by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin
   Corporation, for the United States Department of Energy's National
   Nuclear Security Administration under contract DE-AC04-94-AL85000. This
   author's work was partially supported by NSF grant DMS 0618679.
NR 31
TC 10
Z9 10
U1 0
U2 2
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 3
BP 1267
EP 1291
DI 10.1137/100795760
PG 25
WC Mathematics, Applied
SC Mathematics
GA 782RN
UT WOS:000292027900011
ER

PT J
AU More, JJ
   Wild, SM
AF More, Jorge J.
   Wild, Stefan M.
TI ESTIMATING COMPUTATIONAL NOISE
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE computational noise; deterministic simulations; iterative solvers
AB Computational noise in deterministic simulations is as ill-defined a concept as can be found in scientific computing. When coupled with adaptive strategies, the effects of finite precision destroy smoothness of the simulation output and complicate subsequent analysis. Following the work of Hamming on roundoff errors, we present a new algorithm, ECnoise, for quantifying the noise level of a computed function. Our theoretical framework is based on stochastic noise but does not assume a specific distribution for the noise. For the deterministic simulations considered, ECnoise produces reliable results in a few function evaluations and offers new insights into building blocks of large scale simulations.
C1 [More, Jorge J.; Wild, Stefan M.] Argonne Natl Lab, Div Math & Comp Sci, Argonne, IL 60439 USA.
RP More, JJ (reprint author), Argonne Natl Lab, Div Math & Comp Sci, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM more@mcs.anl.gov; wild@mcs.anl.gov
RI Wild, Stefan/P-4907-2016
OI Wild, Stefan/0000-0002-6099-2772
FU Office of Advanced Scientific Computing Research, Office of Science,
   U.S. Department of Energy; U.S. Department of Energy; U.S. Department of
   Energy Office of Science laboratory [DE-AC02-06CH11357]
FX Submitted to the journal's Methods and Algorithms for Scientific
   Computing section February 17, 2010; accepted for publication (in
   revised form) March 11, 2011; published electronically June 7, 2011.
   This work was supported by the Office of Advanced Scientific Computing
   Research, Office of Science, U.S. Department of Energy. This paper has
   been created by UChicago Argonne, LLC, Operator of Argonne National
   Laboratory ("Argonne"). Argonne, a U.S. Department of Energy Office of
   Science laboratory, is operated under contract DE-AC02-06CH11357. The
   U.S. Government retains a nonexclusive, royalty-free license to publish
   or reproduce the published form of this contribution, or allow others to
   do so, for U.S. Government purposes. Copyright is owned by SIAM to the
   extent not limited by these rights.
NR 23
TC 9
Z9 9
U1 0
U2 1
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
EI 1095-7197
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 3
BP 1292
EP 1314
DI 10.1137/100786125
PG 23
WC Mathematics, Applied
SC Mathematics
GA 782RN
UT WOS:000292027900012
ER

PT J
AU Lin, L
   Yang, C
   Lu, JF
   Ying, LX
   E, WN
AF Lin, Lin
   Yang, Chao
   Lu, Jianfeng
   Ying, Lexing
   E, Weinan
TI A FAST PARALLEL ALGORITHM FOR SELECTED INVERSION OF STRUCTURED SPARSE
   MATRICES WITH APPLICATION TO 2D ELECTRONIC STRUCTURE CALCULATIONS
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE selected inversion; parallel algorithm; electronic structure calculation
ID CHOLESKY FACTORIZATION; LINEAR-EQUATIONS; SYSTEMS; SOLVER; TOOL
AB An efficient parallel algorithm is presented for computing selected components of A(-1) where A is a structured symmetric sparse matrix. Calculations of this type are useful for several applications, including electronic structure analysis of materials in which the diagonal elements of the Green's functions are needed. The algorithm proposed here is a direct method based on a block LDLT factorization. The selected elements of A(-1) we compute lie in the nonzero positions of L+L-T. We use the elimination tree associated with the block LDLT factorization to organize the parallel algorithm, and reduce the synchronization overhead by passing the data level by level along this tree using the technique of local buffers and relative indices. We demonstrate the efficiency of our parallel implementation by applying it to a discretized two dimensional Hamiltonian matrix. We analyze the performance of the parallel algorithm by examining its load balance and communication overhead, and show that our parallel implementation exhibits an excellent weak scaling on a large-scale high performance distributed-memory parallel machine.
C1 [Lin, Lin] Princeton Univ, Program Appl & Computat Math, Princeton, NJ 08544 USA.
   [Yang, Chao] Univ Calif Berkeley, Lawrence Berkeley Lab, Computat Res Div, Berkeley, CA 94720 USA.
   [Lu, Jianfeng] Courant Inst Math Sci, Dept Math, New York, NY 10012 USA.
   [Ying, Lexing] Univ Texas Austin, Dept Math, Austin, TX 78712 USA.
   [Ying, Lexing] Univ Texas Austin, ICES, Austin, TX 78712 USA.
   [E, Weinan] Princeton Univ, Dept Math, Princeton, NJ 08544 USA.
   [E, Weinan] Princeton Univ, PACM, Princeton, NJ 08544 USA.
RP Lin, L (reprint author), Princeton Univ, Program Appl & Computat Math, Princeton, NJ 08544 USA.
EM linlin@math.princeton.edu; cyang@lbl.gov; jianfeng@cims.nyu.edu;
   lexing@math.utexas.edu; weinan@math.princeton.edu
RI Lin, Lin/I-2726-2012; 
OI Lin, Lin/0000-0001-7738-5947; Lu, Jianfeng/0000-0001-6255-5165
FU Office of Advanced Scientific Computing Research of the U.S. DOE
   [DE-AC02-05CH11232]; DOE [DE-FG02-03ER25587]; ONR [N00014-01-1-0674];
   Office of Science, Division of Mathematical, Information, and
   Computational Sciences of the U.S. DOE [DE-AC02-05CH11231]; Alfred P.
   Sloan fellowship; NSF [DMS-0846501]
FX Submitted to the journal's Methods and Algorithms for Scientific
   Computing section October 20, 2009; accepted for publication (in revised
   form) March 29, 2011; published electronically June 7, 2011. The
   computational results presented were obtained at the National Energy
   Research Scientific Computing Center (NERSC), which is supported by the
   Director, Office of Advanced Scientific Computing Research of the U.S.
   DOE under contract number DE-AC02-05CH11232.; Computational Research
   Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
   (cyang@lbl.gov). This author was supported by the Director, Office of
   Science, Division of Mathematical, Information, and Computational
   Sciences of the U.S. DOE under contract number DE-AC02-05CH11231.;
   Department of Mathematics and ICES, University of Texas at Austin, 1
   University Station/C1200, Austin, TX 78712 (lexing@math.utexas.edu).
   This author was supported by an Alfred P. Sloan fellowship and NSF
   CAREER grant DMS-0846501.
NR 45
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U1 0
U2 3
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
EI 1095-7197
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 3
BP 1329
EP 1351
DI 10.1137/09077432X
PG 23
WC Mathematics, Applied
SC Mathematics
GA 782RN
UT WOS:000292027900014
ER

PT J
AU d'Avezac, M
   Botts, R
   Mohlenkamp, MJ
   Zunger, A
AF d'Avezac, Mayeul
   Botts, Ryan
   Mohlenkamp, Martin J.
   Zunger, Alex
TI LEARNING TO PREDICT PHYSICAL PROPERTIES USING SUMS OF SEPARABLE
   FUNCTIONS
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE separated representation; multivariate regression; optimized materials
ID DIMENSIONS
AB We present an algorithm for learning the function that maps a material structure to its value on some property, given the value of this function on several structures. We pose this problem as one of learning (regressing) a function of many variables from scattered data. Each structure is first converted to a weighted set of points by a process that removes irrelevant translations and rotations but otherwise retains full information about the structure. Then, incorporating a weighted average for each structure, we construct the multivariate regression function as a sum of separable functions, following the paradigm of separated representations. The algorithm can treat all finite and periodic structures within a common framework, and in particular does not require all structures to lie on a common lattice. We show how the algorithm simplifies when the structures do lie on a common lattice, and we present numerical results for that case.
C1 [d'Avezac, Mayeul] Natl Renewable Energy Lab, Golden, CO 80401 USA.
   [Botts, Ryan; Mohlenkamp, Martin J.] 1 Ohio Univ, Dept Math, Athens, OH 45701 USA.
   [Zunger, Alex] Univ Colorado, Boulder, CO 80309 USA.
RP d'Avezac, M (reprint author), Natl Renewable Energy Lab, 1617 Cole Blvd, Golden, CO 80401 USA.
EM mayeul.davezac@nrel.gov; rb110503@ohio.edu; mohlenka@ohio.edu;
   Alex.Zunger@colorado.edu
RI Zunger, Alex/A-6733-2013; 
OI d'Avezac, Mayeul/0000-0002-2615-8397
FU U.S. department of Energy, Office of Basic Energy Science and
   Engineering [DE-AC36-08GO28308]; Office of Science, Office of Basic
   Energy Sciences, Materials Sciences and Engineering Division of the U.S.
   Department of Energy; National Science Foundation [DMS-0545895]
FX This author's work was supported by the U.S. department of Energy,
   Office of Basic Energy Science and Engineering, under Award
   DE-AC36-08GO28308, and by the Office of Science, Office of Basic Energy
   Sciences, Materials Sciences and Engineering Division of the U.S.
   Department of Energy.; The work of these authors was supported by the
   National Science Foundation under grant DMS-0545895.
NR 12
TC 4
Z9 4
U1 1
U2 4
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 6
BP 3381
EP 3401
DI 10.1137/100805959
PG 21
WC Mathematics, Applied
SC Mathematics
GA 866HB
UT WOS:000298370000014
ER

PT J
AU Lunacek, M
   Nag, A
   Alber, DM
   Gruchalla, K
   Chang, CH
   Graf, PA
AF Lunacek, Monte
   Nag, Ambarish
   Alber, David M.
   Gruchalla, Kenny
   Chang, Christopher H.
   Graf, Peter A.
TI SIMULATION, CHARACTERIZATION, AND OPTIMIZATION OF METABOLIC MODELS WITH
   THE HIGH PERFORMANCE SYSTEMS BIOLOGY TOOLKIT
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE systems biology; parameter identification; metabolic modeling; ordinary
   differential equations; simulation optimization
ID ADAPTATION; SBML
AB The High Performance Systems Biology Toolkit (HiPer SBTK) is a collection of simulation and optimization components for metabolic modeling and the means to assemble these components into large parallel processing hierarchies suiting a particular simulation and optimization need. The components come in a variety of different categories: model translation, model simulation, parameter sampling, sensitivity analysis, parameter estimation, and optimization. They can be configured at runtime into hierarchically parallel arrangements to perform nested combinations of simulation characterization tasks with excellent parallel scaling to thousands of processors. We describe the observations that led to the system, the components, and how one can arrange them. We show nearly 90% efficient scaling to over 13,000 processors, and we demonstrate three complex yet typical examples that have run on similar to 1000 processors and accomplished billions of stiff ordinary differential equation simulations. This work opens the door for the systems biology metabolic modeling community to take effective advantage of large scale high performance computing resources for the first time.
C1 [Lunacek, Monte; Nag, Ambarish; Alber, David M.; Gruchalla, Kenny; Chang, Christopher H.; Graf, Peter A.] Natl Renewable Energy Lab, Golden, CO 80401 USA.
RP Lunacek, M (reprint author), Natl Renewable Energy Lab, 1617 Cole Blvd, Golden, CO 80401 USA.
EM monte.lunacek@nrel.gov; ambarish.nag@nrel.gov; kenny.gruchalla@nrel.gov;
   christopher.chang@nrel.gov; peter.graf@nrel.gov
FU U.S. Department of Energy; ASCR and BER Offices within the Office of
   Science [DE-AC36-99GO10337]; Office of Energy Efficiency and Renewable
   Energy of the U.S. Department of Energy [DE-AC36-08GO28308]
FX This work was supported by the U.S. Department of Energy through the
   SciDAC and GTL programs by the ASCR and BER Offices within the Office of
   Science (contract DE-AC36-99GO10337). This research used capabilities of
   the National Renewable Energy Laboratory Computational Sciences Center,
   which is supported by the Office of Energy Efficiency and Renewable
   Energy of the U.S. Department of Energy under contract
   DE-AC36-08GO28308.
NR 26
TC 0
Z9 0
U1 1
U2 1
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 6
BP 3402
EP 3424
DI 10.1137/110822402
PG 23
WC Mathematics, Applied
SC Mathematics
GA 866HB
UT WOS:000298370000015
ER

PT J
AU Chen, J
   Safro, I
AF Chen, Jie
   Safro, Ilya
TI ALGEBRAIC DISTANCE ON GRAPHS
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE graph connectivity measure; combinatorial scientific computing;
   stationary iterative process
ID ALGORITHM
AB Measuring the connection strength between a pair of vertices in a graph is one of the most important concerns in many graph applications. Simple measures such as edge weights may not be sufficient for capturing the effects associated with short paths of lengths greater than one. In this paper, we consider an iterative process that smooths an associated value for nearby vertices, and we present a measure of the local connection strength (called the algebraic distance; see [D. Ron, I. Safro, and A. Brandt, Multiscale Model. Simul., 9 (2011), pp. 407-423]) based on this process. The proposed measure is attractive in that the process is simple, linear, and easily parallelized. An analysis of the convergence property of the process reveals that the local neighborhoods play an important role in determining the connectivity between vertices. We demonstrate the practical effectiveness of the proposed measure through several combinatorial optimization problems on graphs and hypergraphs.
C1 [Safro, Ilya] Argonne Natl Lab, Div Math & Comp Sci, Argonne, IL 60439 USA.
   [Chen, Jie] Univ Minnesota Twin Cities, Dept Comp Sci & Engn, Minneapolis, MN 55455 USA.
RP Chen, J (reprint author), Argonne Natl Lab, Div Math & Comp Sci, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM jiechen@mcs.anl.gov; safro@mcs.anl.gov
RI Safro, Ilya/D-9383-2012
FU U.S. Department of Energy Office of Science laboratory
   [DE-AC02-06CH11357]; NSF [DMS-0810938]; University of Minnesota; CSCAPES
   Institute, a U.S. Department of Energy; U.S. Department of Energy
   [DE-AC02-06CH11357]
FX The submitted manuscript has been created in part by UChicago Argonne,
   LLC, Operator of Argonne National Laboratory ("Argonne"). Argonne, a
   U.S. Department of Energy Office of Science laboratory, is operated
   under contract DE-AC02-06CH11357. The U.S. Government retains for
   itself, and others acting on its behalf, a paid-up nonexclusive,
   irrevocable worldwide license in said article to reproduce, prepare
   derivative works, distribute copies to the public, and perform publicly
   and display publicly, by or on behalf of the U.S. Government. Copyright
   is owned by SIAM to the extent not limited by these rights.; The work of
   this author was supported by NSF grant DMS-0810938, a University of
   Minnesota Doctoral Dissertation Fellowship, and the CSCAPES Institute, a
   U.S. Department of Energy project.; The work of this author was funded
   by the CSCAPES Institute, a U.S. Department of Energy project, and in
   part by U.S. Department of Energy contract DE-AC02-06CH11357.
NR 30
TC 8
Z9 8
U1 2
U2 4
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
EI 1095-7197
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 6
BP 3468
EP 3490
DI 10.1137/090775087
PG 23
WC Mathematics, Applied
SC Mathematics
GA 866HB
UT WOS:000298370000018
ER

PT J
AU Wang, B
   Miller, GH
   Colella, P
AF Wang, B.
   Miller, G. H.
   Colella, P.
TI A PARTICLE-IN-CELL METHOD WITH ADAPTIVE PHASE-SPACE REMAPPING FOR
   KINETIC PLASMAS
SO SIAM JOURNAL ON SCIENTIFIC COMPUTING
LA English
DT Article
DE particle methods; adaptive mesh refinement; remapping; Vlasov-Poisson
   equation
ID VLASOV-POISSON EQUATION; VORTEX METHODS; NUMERICAL-METHOD; 3 DIMENSIONS;
   CONVERGENCE; SIMULATION; SCHEMES; HYDRODYNAMICS; SYSTEMS
AB We present a new accurate and efficient particle-in-cell (PIC) method for computing the dynamics of one-dimensional kinetic plasmas. The method overcomes the numerical noise inherent in particle-based methods by periodically remapping the distribution function on a hierarchy of locally refined grids in phase space. Remapping on phase-space grids also provides an opportunity to integrate a collisional model and an associated grid-based solver. The positivity of the distribution function is enforced by redistributing excess phase-space density in a local neighborhood. We demonstrate the method on a number of standard plasma physics problems. It is shown that remapping significantly reduces the numerical noise and results in a more consistent second-order method than the standard PIC method. An error analysis is presented which is based on prior results of Cottet and Raviart's work [SIAM J. Numer. Anal., 21 (1984), pp. 52-76].
C1 [Wang, B.] Univ Calif Davis, Dept Appl Sci, Davis, CA 95616 USA.
   [Miller, G. H.] Univ Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA.
   [Colella, P.] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Appl Numer Algorithms Grp, Berkeley, CA 94720 USA.
RP Wang, B (reprint author), Univ Calif Davis, Dept Appl Sci, 1 Shields Ave, Davis, CA 95616 USA.
EM beiwang@ucdavis.edu; grgmiller@ucdavis.edu; colella@hpcrdm.lbl.gov
RI Wang, Bei/G-4605-2014
OI Wang, Bei/0000-0003-4942-9652
FU U.S. Department of Energy Office of Advanced Scientific Computing
   Research at the Lawrence Berkeley National Laboratory
   [DE-AC02-05CH11231]; DOE [DE-SC0001981]
FX This work was supported by the U.S. Department of Energy Office of
   Advanced Scientific Computing Research under contract DE-AC02-05CH11231
   at the Lawrence Berkeley National Laboratory.; The research of this
   author was supported by DOE grant DE-SC0001981.
NR 45
TC 8
Z9 9
U1 1
U2 4
PU SIAM PUBLICATIONS
PI PHILADELPHIA
PA 3600 UNIV CITY SCIENCE CENTER, PHILADELPHIA, PA 19104-2688 USA
SN 1064-8275
EI 1095-7197
J9 SIAM J SCI COMPUT
JI SIAM J. Sci. Comput.
PY 2011
VL 33
IS 6
BP 3509
EP 3537
DI 10.1137/100811805
PG 29
WC Mathematics, Applied
SC Mathematics
GA 866HB
UT WOS:000298370000020
ER

PT S
AU Yan, F
   Espenlaub, A
   Devaty, RP
   Ohshima, T
   Choyke, WJ
AF Yan, F.
   Espenlaub, A.
   Devaty, R. P.
   Ohshima, T.
   Choyke, W. J.
BE Monakhov, EV
   Hornos, T
   Svensson, BG
TI Using Intrinsic Defect Spectra in 4H SiC as Imbedded Thermometers in the
   Temperature Range from 100 degrees C to 1500 degrees C
SO SILICON CARBIDE AND RELATED MATERIALS 2010
SE Materials Science Forum
LA English
DT Proceedings Paper
CT 8th European Conference on Silicon Carbide and Related Materials
CY AUG 29-SEP 02, 2010
CL Sundvolden Conf Ctr, Oslo, NORWAY
SP Aixtron, Dow Corning, Birkeland Innovation, Centrotherm, CREE Inc, Gen Elect, LPE, Norden NordForsk, SiCED, SiCrystal AG, Res Council Norway, Univ Oslo
HO Sundvolden Conf Ctr
DE Interface Temperature; Intrinsic Defect Spectra; Electron Irradiation;
   Thin Films; Graphene
AB Low doped epitaxial films of 4H SiC irradiated at 1 MeV and electron fluences of 1 x 10(15) cm(-2), 3 x 10(15) cm(-2) and 1 x 10(16) cm(-2) have been used to measure temperatures in two temperature intervals: 580 degrees C to 640 degrees C and 1220 degrees C to 1320 degrees C. Possible accuracy of the temperature measurements is judged to be better than 10 degrees Centigrade. Similar measurements should be possible from 100 degrees C to 1500 degrees C.
C1 [Yan, F.] Natl Renewable Energy Lab, Golden, CO 80401 USA.
   [Espenlaub, A.; Devaty, R. P.; Choyke, W. J.] Univ Pittsburgh, Dept Phys, Pittsburgh, PA 15260 USA.
   [Ohshima, T.] Japan Atom Energy Agcy, Gunma 3701292, Japan.
RP Yan, F (reprint author), Natl Renewable Energy Lab, Golden, CO 80401 USA.
EM choyke@pitt.edu
FU II-VI Foundation
FX The University of Pittsburgh group thanks the II-VI Foundation for the
   support of this research. We are very grateful to Dr. Al Burk and his
   group at Cree, Inc. for much assistance with the thick, low doped
   epitaxial 4H SiC. We thank Kent Berthoud of the University of Pittsburgh
   for help in taking data and data reduction.
NR 1
TC 0
Z9 0
U1 1
U2 1
PU TRANS TECH PUBLICATIONS LTD
PI DURNTEN-ZURICH
PA KREUZSTRASSE 10, 8635 DURNTEN-ZURICH, SWITZERLAND
SN 0255-5476
J9 MATER SCI FORUM
PY 2011
VL 679-680
BP 237
EP +
DI 10.4028/www.scientific.net/MSF.679-680.237
PG 2
WC Engineering, Multidisciplinary; Materials Science, Multidisciplinary;
   Physics, Applied
SC Engineering; Materials Science; Physics
GA BVJ83
UT WOS:000291673500056
ER

PT B
AU Keiter, ER
   Thornquist, HK
   Hoekstra, RJ
   Russo, TV
   Schiek, RL
   Rankin, EL
AF Keiter, Eric R.
   Thornquist, Heidi K.
   Hoekstra, Robert J.
   Russo, Thomas V.
   Schiek, Richard L.
   Rankin, Eric L.
BE Li, P
   Silveira, LM
   Feldmann, P
TI Parallel Transistor-Level Circuit Simulation
SO SIMULATION AND VERIFICATION OF ELECTRONIC AND BIOLOGICAL SYSTEMS
LA English
DT Proceedings Paper
CT Circuit and Multi-Domain Simulation Workshop
CY NOV 05, 2009
CL San Jose, CA
SP Synopsys Inc, ACM SIGDA Phys Design Techn Comm
ID DOMAIN DECOMPOSITION; ALGORITHM; SOLVER
AB With the advent of multi-core technology, inexpensive large-scale parallel platforms are now widely available. While this presents new opportunities for the EDA community, traditional transistor-level, SPICE-style circuit simulation has unique parallel simulation challenges. Here the Xyce Parallel Circuit Simulator is described, which has been designed from the "from-the-ground-up" to be distributed memory-parallel. Xyce has demonstrated scalable circuit simulation on hundreds of processors, but doing so required a comprehensive parallel strategy. This included the development of new solver technologies, including novel preconditioned iterative solvers, as well as attention to other aspects of the simulation such as parallel file I/O, and efficient load balancing of device evaluations and linear systems. Xyce relies primarily upon a message-passing (MPI-based) implementation, but optimal scalability on multi-core platforms can require a combination of message-passing and threading. To accommodate future parallel platforms, software abstractions allowing adaptation to other parallel paradigms are part of the Xyce design.
C1 [Keiter, Eric R.; Thornquist, Heidi K.; Russo, Thomas V.; Schiek, Richard L.; Rankin, Eric L.] Sandia Natl Labs, Elect & Microsyst Modeling Dept, POB 5800, Albuquerque, NM 87185 USA.
   [Hoekstra, Robert J.] Sandia Natl Labs, Appl Math & Applicat Dept, Albuquerque, NM 87185 USA.
RP Keiter, ER (reprint author), Sandia Natl Labs, Elect & Microsyst Modeling Dept, POB 5800, Albuquerque, NM 87185 USA.
EM erkeite@sandia.gov; hkthorn@sandia.gov; rjhoeks@sandia.gov;
   tvrusso@sandia.gov; rlschiek@sandia.gov; elranki@sandia.gov
NR 30
TC 4
Z9 4
U1 0
U2 0
PU SPRINGER
PI DORDRECHT
PA PO BOX 17, 3300 AA DORDRECHT, NETHERLANDS
BN 978-94-007-0148-9
PY 2011
BP 1
EP +
DI 10.1007/978-94-007-0149-6_1
PG 3
WC Engineering, Electrical & Electronic
SC Engineering
GA BEO36
UT WOS:000317550800001
ER

PT B
AU May, EE
AF May, Elebeoba E.
BE Li, P
   Silveira, LM
   Feldmann, P
TI Circuit-Based Models of Biomolecular System Dynamics
SO SIMULATION AND VERIFICATION OF ELECTRONIC AND BIOLOGICAL SYSTEMS
LA English
DT Proceedings Paper
CT Circuit and Multi-Domain Simulation Workshop
CY NOV 05, 2009
CL San Jose, CA
SP Synopsys Inc, ACM SIGDA Phys Design Techn Comm
ID SOFTWARE ENVIRONMENT; SIMULATION; PATHWAY; CELL; MECHANISM; NETWORKS
AB Methods from the field of electrical engineering have been used for the modeling and analysis of biological systems. In this work we exploit parallels between electrical and biological circuits for simulation of bimolecular processes and systems. We review the development of BioXyce, an electrical circuit-based systems biology simulation platform, and demonstrate its use in simulating intracellular biochemical pathways. We present simulation results for metabolic pathways and eukaryotic signal transduction pathways important in host immune response.
C1 Sandia Natl Labs, Albuquerque, NM 87185 USA.
RP May, EE (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
EM eemay@sandia.gov
NR 26
TC 3
Z9 3
U1 0
U2 2
PU SPRINGER
PI DORDRECHT
PA PO BOX 17, 3300 AA DORDRECHT, NETHERLANDS
BN 978-94-007-0148-9
PY 2011
BP 137
EP 156
DI 10.1007/978-94-007-0149-6_7
PG 20
WC Engineering, Electrical & Electronic
SC Engineering
GA BEO36
UT WOS:000317550800007
ER

PT B
AU Ahn, TH
   Dechev, D
   Lin, HS
   Adalsteinsson, H
   Janssen, C
AF Ahn, Tae-Hyuk
   Dechev, Damian
   Lin, Heshan
   Adalsteinsson, Helgi
   Janssen, Curtis
BE Kacprzyk, J
   Pina, N
   Filipe, J
TI EVALUATING PERFORMANCE OPTIMIZATIONS OF LARGE-SCALE GENOMIC SEQUENCE
   SEARCH APPLICATIONS USING SST/MACRO
SO SIMULTECH 2011: PROCEEDINGS OF THE 1ST INTERNATIONAL CONFERENCE ON
   SIMULATION AND MODELING METHODOLOGIES, TECHNOLOGIES AND APPLICATIONS
LA English
DT Proceedings Paper
CT 1st International Conference on Simulation and Modeling Methodologies,
   Technologies and Applications (SIMULTECH 2011)
CY JUL 29-31, 2011
CL Noordwijkerhout, NETHERLANDS
SP Inst Syst & Technol Informat, Control & Commun, Soc Model & Simulat Int, Informat Interact Intelligence, Liophant Simulat, Simulat Team
DE Exascale architecture simulator; mpiBLAST; Performance and scalability
   modeling
ID SIMULATION; BLAST; PROGRAMS
AB The next decade will see a rapid evolution of HPC node architectures as power and cooling constraints are limiting increases in microprocessor clock speeds and constraining data movement. Future and current HPC applications will have to change and adapt as node architectures evolve. The application of advanced cycle accurate node architecture simulators will play a crucial role for the design and optimization of future data intensive applications. In this paper, we present our simulation-based framework for analyzing the scalability and performance of a number of critical optimizations of a massively parallel genomic search application, mpiBLAST, using an advanced macroscale simulator (SST/macro). In this paper we report the use of our framework for the evaluation of three potential improvements of mpiBLAST: enabling high-performance parallel output, an approach for caching database fragments in memory, and a methodology for pre-distributing database segments. In our experimental setup, we performed query sequence matching on the genome of the yellow fever mosquito, Aedes aegypti.
C1 [Ahn, Tae-Hyuk; Lin, Heshan] Virginia Tech, Dept Comp Sci, Blacksburg, VA 24061 USA.
   [Dechev, Damian] Univ Cent Florida, Dept Elect Engn & Comp Sci, Orlando, FL 32816 USA.
   [Dechev, Damian; Adalsteinsson, Helgi; Janssen, Curtis] Sandia Natl Labs, Scalable Comp R&D Dept, Livermore, CA 94551 USA.
RP Ahn, TH (reprint author), Virginia Tech, Dept Comp Sci, Blacksburg, VA 24061 USA.
EM thahn@cs.vt.edu; ddechev@sandia.gov; hlin2@cs.vt.edu;
   hadalst@sandia.gov; cljanss@sandia.gov
NR 29
TC 0
Z9 0
U1 0
U2 0
PU INSTICC-INST SYST TECHNOLOGIES INFORMATION CONTROL & COMMUNICATION
PI SETUBAL
PA AVENIDA D MANUEL L, 27A 2 ESQUERDO, SETUBAL, 2910-595, PORTUGAL
BN 978-989-8425-78-2
PY 2011
BP 65
EP 73
PG 9
WC Computer Science, Interdisciplinary Applications
SC Computer Science
GA BG9SB
UT WOS:000393719200009
ER

PT S
AU Dagel, DJ
   Liu, YS
   Zhong, L
   Luo, Y
   Zeng, Y
   Himmel, M
   Ding, SY
   Smith, S
AF Dagel, D. J.
   Liu, Y. -S.
   Zhong, L.
   Luo, Y.
   Zeng, Y.
   Himmel, M.
   Ding, S. -Y.
   Smith, S.
BE Enderlein, J
   Gryczynski, ZK
   Erdmann, R
TI DOPI and PALM Imaging of Single Carbohydrate Binding Modules Bound to
   Cellulose Nanocrystals
SO SINGLE MOLECULE SPECTROSCOPY AND IMAGING IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Single Molecule Spectroscopy and Imaging IV
CY JAN 22-23, 2011
CL San Francisco, CA
SP SPIE
DE Single Molecule; PALM; DOPI; GFP; TIRF; Cellulose; Carbohydrate Binding
   Module; Bioenergy; Biomass
ID ORIENTATION; MICROSCOPY
AB We use single molecule imaging methods to study the binding characteristics of carbohydrate-binding modules (CBMs) to cellulose crystals. The CBMs are carbohydrate specific binding proteins, and a functional component of most cellulase enzymes, which in turn hydrolyze cellulose, releasing simple sugars suitable for fermentation to biofuels. The CBM plays the important role of locating the crystalline face of cellulose, a critical step in cellulase action. A biophysical understanding of the CBM action aids in developing a mechanistic picture of the cellulase enzyme, important for selection and potential modification. Towards this end, we have genetically modified cellulose-binding CBM derived from bacterial source with green fluorescent protein (GFP), and photo-activated fluorescence protein PAmCherry tags, respectively. Using the single molecule method known as Defocused Orientation and Position Imaging (DOPI), we observe a preferred orientation of the CBM-GFP complex relative to the Valonia cellulose nanocrystals. Subsequent analysis showed the CBMs bind to the opposite hydrophobic < 110 > faces of the cellulose nanocrystals with a well-defined cross-orientation of about similar to 70 degrees. Photo Activated Localization Microscopy (PALM) is used to localize CBM-PAmCherry with a localization accuracy of similar to 10nm. Analysis of the nearest neighbor distributions along and perpendicular to the cellulose nanocrystal axes are consistent with single-file CBM binding along the fiber axis, and microfibril bundles consisting of close packed similar to 20nm or smaller cellulose microfibrils.
C1 [Dagel, D. J.; Zhong, L.; Smith, S.] S Dakota Sch Mines & Technol, Rapid City, SD 57701 USA.
RP Ding, SY (reprint author), Natl Renewable Energy Lab, Biosci Ctr, Golden, CO 80401 USA.
EM Shi.You.Ding@nrel.gov; Steve.Smith@sdsmt.edu
RI Ding, Shi-You/O-1209-2013
NR 14
TC 2
Z9 2
U1 3
U2 6
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-8442-0
J9 PROC SPIE
PY 2011
VL 7905
AR 79050P
DI 10.1117/12.875285
PG 6
WC Optics; Radiology, Nuclear Medicine & Medical Imaging; Spectroscopy
SC Optics; Radiology, Nuclear Medicine & Medical Imaging; Spectroscopy
GA BXZ25
UT WOS:000297674400013
ER

PT S
AU Gaiotto, T
   Nguyena, HB
   Jung, J
   Gnanakaran, GS
   Schmidt, JG
   Waldo, GS
   Bradbury, AM
   Goodwin, PM
AF Gaiotto, Tiziano
   Nguyena, Hau B.
   Jung, Jaemyeong
   Gnanakaran, Gnana S.
   Schmidt, Jurgen G.
   Waldo, Geoffrey S.
   Bradbury, Andrew M.
   Goodwin, Peter M.
BE Enderlein, J
   Gryczynski, ZK
   Erdmann, R
TI A photophysical study of two fluorogen-activating proteins bound to
   their cognate fluorogens
SO SINGLE MOLECULE SPECTROSCOPY AND IMAGING IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Single Molecule Spectroscopy and Imaging IV
CY JAN 22-23, 2011
CL San Francisco, CA
SP SPIE
DE fluorogen-activating protein; fluorescence correlation spectroscopy;
   single-molecule; imaging; spectroscopy; fluorogen; thiazole orange;
   malachite green
ID FLUORESCENCE CORRELATION SPECTROSCOPY; SINGLE-CHAIN ANTIBODIES;
   DIFFUSION-COEFFICIENTS; QUANTUM DOTS; MOLECULES; BIOLOGY
AB We are exploring the use of fluorogen-activating proteins (FAPs) as reporters for single-molecule imaging. FAPs are single-chain antibodies selected to specifically bind small chromophoric molecules termed fluorogens. Upon binding to its cognate FAP the fluorescence quantum yield of the fluorogen increases giving rise to a fluorescent complex. Based on the seminal work of Szent-Gyorgyi et al. (Nature Biotechnology, Volume 26, Number 2, pp 235-240, 2008) we have chosen to study two fluorogen-activating single-chain antibodies, HL1.0.1-TO1 and H6-MG, bound to their cognate fluorogens, thiazole orange and malachite green derivatives, respectively. Here we use fluorescence correlation spectroscopy to study the photophysics of these fluorescent complexes.
C1 [Gaiotto, Tiziano; Nguyena, Hau B.; Waldo, Geoffrey S.; Bradbury, Andrew M.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Gaiotto, T (reprint author), Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
EM tiziano@lanl.gov; pmg@lanl.gov
OI Schmidt, Jurgen/0000-0002-8192-9940; Gnanakaran, S/0000-0002-9368-3044;
   Bradbury, Andrew/0000-0002-5567-8172
NR 23
TC 0
Z9 0
U1 0
U2 3
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-8442-0
J9 PROC SPIE
PY 2011
VL 7905
AR 79050O
DI 10.1117/12.875418
PG 10
WC Optics; Radiology, Nuclear Medicine & Medical Imaging; Spectroscopy
SC Optics; Radiology, Nuclear Medicine & Medical Imaging; Spectroscopy
GA BXZ25
UT WOS:000297674400012
ER

PT J
AU Anafi, R
   Sato, TK
   Kim, J
   Hogenesch, JB
AF Anafi, R.
   Sato, T. K.
   Kim, J.
   Hogenesch, J. B.
TI IDENTIFICATION OF NOVEL CORE CLOCK GENES BY BAYESIAN INTEGRATION
SO SLEEP
LA English
DT Meeting Abstract
CT 25th Anniversary Meeting of the Associated-Professional-Sleep-Societies
   (APSS)
CY JUN 11-15, 2011
CL Minneapolis, MN
SP Associated Profess Sleep Soc (APSS)
C1 [Anafi, R.] Univ Penn, Div Sleep Med, Philadelphia, PA 19104 USA.
   [Hogenesch, J. B.] Univ Penn, Dept Pharmacol, Philadelphia, PA 19104 USA.
   [Hogenesch, J. B.] Univ Penn, Inst Translat Med & Therapeut, Philadelphia, PA 19104 USA.
   [Kim, J.] Univ Penn, Dept Biol, Philadelphia, PA 19104 USA.
   [Kim, J.] Univ Penn, Penn Genome Frontiers Inst, Philadelphia, PA 19104 USA.
   [Sato, T. K.] Univ Wisconsin, Great Lakes Bioenergy Res Ctr, Madison, WI USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU AMER ACAD SLEEP MEDICINE
PI WESTCHESTER
PA ONE WESTBROOK CORPORATE CTR, STE 920, WESTCHESTER, IL 60154 USA
SN 0161-8105
J9 SLEEP
JI Sleep
PY 2011
VL 34
SU S
MA 0026
BP A12
EP A12
PG 1
WC Clinical Neurology; Neurosciences
SC Neurosciences & Neurology
GA 886EG
UT WOS:000299834400028
ER

PT J
AU Presley, AD
   Chang, JJ
   Xu, T
AF Presley, Andrew D.
   Chang, Joseph J.
   Xu, Ting
TI Directed co-assembly of heme proteins with amphiphilic block copolymers
   toward functional biomolecular materials
SO SOFT MATTER
LA English
DT Article
ID DE-NOVO DESIGN; 4-HELIX BUNDLE PEPTIDES; THIN-FILMS; DIRECT
   ELECTROCHEMISTRY; EXTENDED CHROMOPHORES; ELECTRON-TRANSFER; HELIX
   BUNDLE; TEMPLATES; HEMOGLOBIN; MAQUETTES
AB Directed co-assembly of block copolymers and proteins/peptides may lead to hierarchically structured functional biomolecular materials. However, this requires one to synergistically direct multiple self-assembly processes. Retaining proper cofactor binding is essential to utilize many bio-motifs for catalytic reactions and sensing. Here, by using a heme-binding helix bundle peptide-polymer conjugate and a holo myoglobin-polymer conjugate as examples, we show that the simultaneous, macroscopic assembly of heme-binding proteins and diblock copolymers can be achieved in thin films without compromising protein structures, cofactor binding and enzymatic activities. To our knowledge, this is the first example of a protein/cofactor complex formed upon being co-assembled with an amphiphilic block copolymer in thin films. Molecular assembly via a combination of biomolecular recognition and polymer phase separation in this fashion will lead to hybrid materials combining properties of both synthetic and biological building blocks.
C1 [Presley, Andrew D.; Chang, Joseph J.; Xu, Ting] Univ Calif Berkeley, Dept Mat Sci & Engn, Berkeley, CA 94720 USA.
   [Xu, Ting] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
   [Xu, Ting] Lawrence Berkeley Natl Lab, Mat Sci Div, Berkeley, CA 94720 USA.
RP Xu, T (reprint author), Univ Calif Berkeley, Dept Mat Sci & Engn, Berkeley, CA 94720 USA.
EM tingxu@berkeley.edu
FU U.S. Department of Energy at Lawrence Berkeley National Laboratory
   [DE-AC02-05CH11231]; Office of Science, Office of Basic Energy Sciences,
   of the U.S. Department of Energy [DE-AC02-05CH11231, DE-AC02-06CH11357]
FX This work is supported by the U.S. Department of Energy through the
   Hybrid Biomaterials Scattering Program at Lawrence Berkeley National
   Laboratory under Contract DE-AC02-05CH11231. Use of the Advanced Light
   Source is supported by the Director, Office of Science, Office of Basic
   Energy Sciences, of the U.S. Department of Energy under Contract No.
   DE-AC02-05CH11231. Use of the Advanced Photon Source was supported by
   the U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences, under Contract No. DE-AC02-06CH11357. We acknowledge helpful
   discussions with Jessica Y. Shu and Yu-Ja Huang regarding spectroscopic
   characterization of peptide/BCP thin films.
NR 54
TC 20
Z9 20
U1 9
U2 52
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 1
BP 172
EP 179
DI 10.1039/c0sm00817f
PG 8
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 695HC
UT WOS:000285360200024
ER

PT J
AU Li, X
   Zamponi, M
   Hong, KL
   Porcar, L
   Shew, CY
   Jenkins, T
   Liu, E
   Smith, GS
   Herwig, KW
   Liu, Y
   Chen, WR
AF Li, Xin
   Zamponi, Michaela
   Hong, Kunlun
   Porcar, Lionel
   Shew, Chwen-Yang
   Jenkins, Timothy
   Liu, Emily
   Smith, Gregory S.
   Herwig, Kenneth W.
   Liu, Yun
   Chen, Wei-Ren
TI pH Responsiveness of polyelectrolyte dendrimers: a dynamical perspective
SO SOFT MATTER
LA English
DT Article
ID ANGLE NEUTRON-SCATTERING; PAMAM DENDRIMERS; MOLECULAR-DYNAMICS;
   AQUEOUS-SOLUTIONS; POLY(AMIDOAMINE) DENDRIMERS; CONFORMATIONAL-CHANGES;
   INTERNAL DYNAMICS; FIELD GRADIENT; SPIN ECHOES; DIFFUSION
AB A combined quasi-elastic neutron scattering (QENS) and high-resolution solution NMR spectroscopy study was conducted to investigate the internal dynamics of aqueous (D(2)O) G5 PAMAM dendrimer solutions as a function of molecular protonation at room temperature. Localized motion of the dendrimer segments was clearly exhibited in the QENS data analysis while the global, center-of-mass translational diffusion was measured by NMR. Our results unambiguously demonstrate an increased rapidity in local scale (similar to 3 angstrom) motion upon increasing the molecular protonation. This is contrary to an intuitive picture that increased charge stiffens the dendrimer segments thereby inhibiting local motion. These charge-induced changes may be a result of interactions with the surrounding counterions and water molecules as the segments explore additional intra-dendrimer volume made available by slight electrostatic swelling and redistribution of mass in the dendrimer interior. This observation is relevant to development of a microscopic picture of dendrimer-based packages as guest-molecule delivery vehicles because reorganization of the confining dendrimer segments must be a precursor to guest-molecule release.
C1 [Li, Xin; Zamponi, Michaela; Smith, Gregory S.; Herwig, Kenneth W.; Chen, Wei-Ren] Oak Ridge Natl Lab, Neutron Scattering Sci Div, Oak Ridge, TN 37831 USA.
   [Li, Xin; Liu, Emily] Rensselaer Polytech Inst, Dept Mech Aerosp & Nucl Engn, Troy, NY 12180 USA.
   [Zamponi, Michaela] Forschungszentrum Julich, Julich Ctr Neutron Sci, D-52425 Julich, Germany.
   [Hong, Kunlun] Oak Ridge Natl Lab, Ctr Nanophase Mat Sci, Oak Ridge, TN 37831 USA.
   [Porcar, Lionel] Inst Laue Langevin, F-38042 Grenoble 9, France.
   [Shew, Chwen-Yang] CUNY, Dept Chem, Coll Staten Isl, Staten Isl, NY 10314 USA.
   [Jenkins, Timothy; Liu, Yun] Natl Inst Stand & Technol, NIST Ctr Neutron Res, Gaithersburg, MD 20899 USA.
   [Liu, Yun] Univ Delaware, Dept Chem Engn, Newark, DE 19716 USA.
   [Chen, Wei-Ren] Oak Ridge Natl Lab, Joint Inst Neutron Sci, Oak Ridge, TN 37831 USA.
   [Chen, Wei-Ren] Univ Tennessee, Dept Chem & Biomol Engn, Knoxville, TN 37996 USA.
RP Herwig, KW (reprint author), Oak Ridge Natl Lab, Neutron Scattering Sci Div, Oak Ridge, TN 37831 USA.
EM herwigkw@ornl.gov; yunliu@nist.gov; chenw@ornl.gov
RI Herwig, Kenneth/F-4787-2011; Sanders, Susan/G-1957-2011; Liu,
   Yun/F-6516-2012; Li, Xin/K-9646-2013; Smith, Gregory/D-1659-2016; Hong,
   Kunlun/E-9787-2015
OI Liu, Yun/0000-0002-0944-3153; Li, Xin/0000-0003-0606-434X; Smith,
   Gregory/0000-0001-5659-1805; Hong, Kunlun/0000-0002-2852-5111
FU Scientific User Facilities Division, Office of Basic Energy Sciences,
   U.S. Department of Energy; ORNL by the Division of Scientific User
   Facilities, U.S. Department of Energy
FX This research at Oak Ridge National Laboratory's SNS was sponsored by
   the Scientific User Facilities Division, Office of Basic Energy
   Sciences, U.S. Department of Energy. CNMS is sponsored at ORNL by the
   Division of Scientific User Facilities, U.S. Department of Energy.
NR 33
TC 19
Z9 19
U1 2
U2 39
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 2
BP 618
EP 622
DI 10.1039/c0sm00671h
PG 5
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 705EE
UT WOS:000286110900038
ER

PT J
AU Kewalramani, S
   Wang, ST
   Lin, YA
   Huong, GN
   Wang, QA
   Fukuto, M
   Yang, L
AF Kewalramani, Sumit
   Wang, Suntao
   Lin, Yuan
   Huong Giang Nguyen
   Wang, Qian
   Fukuto, Masafumi
   Yang, Lin
TI Systematic approach to electrostatically induced 2D crystallization of
   nanoparticles at liquid interfaces
SO SOFT MATTER
LA English
DT Article
ID COWPEA MOSAIC-VIRUS; CHARGED LIPID LAYERS; PROTEIN CRYSTALLIZATION;
   PHOSPHOLIPID MONOLAYERS; COLLOIDAL CRYSTALS; ARRAYS; CRYSTALLOGRAPHY;
   SURFACES; POINT
AB We report an experimental demonstration of a strategy for inducing two-dimensional (2D) crystallization of charged nanoparticles on oppositely charged fluid interfaces. This strategy aims to maximize the interfacial adsorption of nanoparticles, and hence their lateral packing density, by utilizing a combination of weakly charged particles and a high surface charge density on the planar interface. In order to test this approach, we investigated the assembly of cowpea mosaic virus (CPMV) on positively charged lipid monolayers at the aqueous solution surface, by means of in situ X-ray scattering measurements at the liquid-vapor interface. The assembly was studied as a function of the solution pH, which was used to vary the charge on CPMV, and of the mole fraction of the cationic lipid in the binary lipid monolayer, which set the interface charge density. The 2D crystallization of CPMV occurred in a narrow pH range just above the particle's isoelectric point, where the particle charge was weakly negative, and only when the cationic-lipid fraction in the monolayer exceeded a threshold. The observed 2D crystals exhibited nearly the same packing density as the densest lattice plane within the known 3D crystals of CPMV. The above electrostatic approach of maximizing interfacial adsorption may provide an efficient route to the crystallization of nanoparticles at aqueous interfaces.
C1 [Kewalramani, Sumit; Fukuto, Masafumi] Brookhaven Natl Lab, Condensed Matter Phys & Mat Sci Dept, Upton, NY 11973 USA.
   [Wang, Suntao; Yang, Lin] Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
   [Lin, Yuan; Huong Giang Nguyen; Wang, Qian] Univ S Carolina, Dept Chem & Biochem, Columbia, SC 29208 USA.
   [Lin, Yuan; Huong Giang Nguyen; Wang, Qian] Univ S Carolina, Nanoctr, Columbia, SC 29208 USA.
RP Fukuto, M (reprint author), Brookhaven Natl Lab, Condensed Matter Phys & Mat Sci Dept, Upton, NY 11973 USA.
EM fukuto@bnl.gov; lyang@bnl.gov
RI Yang, Lin/D-5872-2013; 
OI Yang, Lin/0000-0003-1057-9194; Wang, Qian/0000-0002-2149-384X
FU US Department of Energy, Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering [DE-AC02-98CH10886]; National Science
   Foundation [CHE-0748690]; Department of Defense [WN11NF-09-1-236];
   Department of Energy, Office of Basic Energy Sciences [DE-SC0001477]; W.
   M. Keck Foundation
FX We thank H. Hlaing for assistance with sample preparation. The BNL
   contribution to this work, including use of the National Synchrotron
   Light Source, was supported by the US Department of Energy, Office of
   Basic Energy Sciences, Division of Materials Sciences and Engineering,
   under contract no. DE-AC02-98CH10886. QW acknowledges the financial
   support from National Science Foundation under contract no. CHE-0748690,
   Department of Defense under contract no. WN11NF-09-1-236, Department of
   Energy, Office of Basic Energy Sciences, under contract no.
   DE-SC0001477, and the W. M. Keck Foundation.
NR 44
TC 14
Z9 14
U1 3
U2 32
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 3
BP 939
EP 945
DI 10.1039/c0sm00956c
PG 7
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 711TY
UT WOS:000286615500021
ER

PT J
AU Sadakane, K
   Iguchi, N
   Nagao, M
   Endo, H
   Melnichenko, YB
   Seto, H
AF Sadakane, Koichiro
   Iguchi, Natsuki
   Nagao, Michihiro
   Endo, Hitoshi
   Melnichenko, Yuri B.
   Seto, Hideki
TI 2D-Ising-like critical behavior in mixtures of water and
   3-methylpyridine including antagonistic salt or ionic surfactant
SO SOFT MATTER
LA English
DT Article
ID AQUEOUS-ELECTROLYTE SOLUTION; ANGLE NEUTRON-SCATTERING;
   X-RAY-SCATTERING; PHASE-SEPARATION; 3RD COMPONENTS; CRITICAL-POINT;
   CROSSOVER; SYSTEM; RENORMALIZATION; DENSITY
AB The effect of an antagonistic salt on the phase behavior and nanoscale structure of a mixture of D(2)O and 3-methylpyridine was investigated by visual inspection and small-angle neutron scattering (SANS). The addition of the antagonistic salt, namely sodium tetraphenylborate (NaBPh(4)), induces the shrinking of the two-phase region in contrast to the case in which a normal (hydrophilic) salt is added. Below the phase separation point, the SANS profiles cannot be described by the Ornstein-Zernike function owing to the existence of a long-range periodic structure. With increasing salt concentration, the critical exponents change from the values of 3D-Ising and approach those of 2D-Ising. These results suggest that the concentration fluctuation of the mixture of solvents is limited to a quasi two-dimensional space by the periodic structure induced by the adding the salt. The same behaviors were also observed in mixtures composed of water, 3-methylpyridine, and ionic surfactant.
C1 [Sadakane, Koichiro; Seto, Hideki] High Energy Accelerator Res Org, KENS, Tsukuba, Ibaraki 3050801, Japan.
   [Sadakane, Koichiro; Seto, Hideki] High Energy Accelerator Res Org, Inst Mat Struct Sci, CMRC, Tsukuba, Ibaraki 3050801, Japan.
   [Iguchi, Natsuki] Kyoto Univ, Dept Phys, Kyoto 6068502, Japan.
   [Nagao, Michihiro] Natl Inst Stand & Technol, NCNR, Gaithersburg, MD 20899 USA.
   [Endo, Hitoshi] Univ Tokyo, Inst Solid State Phys, NSL, Tokai, Ibaraki 3191106, Japan.
   [Melnichenko, Yuri B.] Oak Ridge Natl Lab, NSSD, Oak Ridge, TN 37831 USA.
   [Nagao, Michihiro] Indiana Univ, CEEM, Bloomington, IN 47408 USA.
RP Seto, H (reprint author), High Energy Accelerator Res Org, KENS, Tsukuba, Ibaraki 3050801, Japan.
EM hideki.seto@kek.jp
RI Sanders, Susan/G-1957-2011; 
OI Seto, Hideki/0000-0002-1658-3576
FU Ministry of Education, Culture, Sports, Science and Technology (MEXT) of
   Japan; Scientific User Facilities Division, Office of Basic Energy
   Sciences, U.S. Department of Energy
FX The authors acknowledge Prof. A. Onuki at Kyoto University for valuable
   discussions. This work was supported by a Grant-in-Aid for Scientific
   Research on Priority Area "Soft Matter Physics'' from the Ministry of
   Education, Culture, Sports, Science and Technology (MEXT) of Japan. The
   SANS experiments in JAEA were performed under the approval of the
   Neutron Scattering Program Advisory Committee (Proposal No. 8616). The
   Research at Oak Ridge National Laboratory's High Flux Isotope Reactor
   was sponsored by the Scientific User Facilities Division, Office of
   Basic Energy Sciences, U.S. Department of Energy, and approved by the
   steering committee of the US-Japan Collaborative Program on Neutron
   Scattering (2008-14).
NR 27
TC 18
Z9 18
U1 0
U2 9
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 4
BP 1334
EP 1340
DI 10.1039/c0sm00598c
PG 7
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 718AM
UT WOS:000287091600012
ER

PT J
AU Kalb, J
   Dukes, D
   Kumar, SK
   Hoy, RS
   Grest, GS
AF Kalb, Joshua
   Dukes, Douglas
   Kumar, Sanat K.
   Hoy, Robert S.
   Grest, Gary S.
TI End grafted polymer nanoparticles in a polymeric matrix: Effect of
   coverage and curvature
SO SOFT MATTER
LA English
DT Article
ID LINEAR FLEXIBLE MACROMOLECULES; MOLECULAR-DYNAMICS SIMULATION;
   DISPERSING NANOPARTICLES; COMPUTER-SIMULATIONS; SURFACE; BRUSHES;
   DENSITY; MELTS; CHAINS; LAYERS
AB It has recently been proposed that the miscibility of nanoparticles with a polymer matrix can be controlled by grafting polymer chains to the nanoparticle surface. We examine this hypothesis using molecular dynamics simulations on a single nanoparticle of radius R (4 sigma <= R <= 16 sigma, where sigma is the diameter of a polymer monomer) grafted with chains of length 500 in a polymer melt of chains of length 1000. The grafting density Sigma is varied between 0.04-0.32 chains/sigma(2). To facilitate equilibration a Monte Carlo double-bridging algorithm is applied - new bonds are formed across a pair of chains, creating two new chains each substantially different from the original. For the long brush chains studied here, the structure of the brush assumes its large particle limit even for R as small as 8 sigma, which is consistent with recent experimental findings and the small chain lattice simulations of Klos and Pakula. We study autophobic dewetting of the melt from the brush as a function of increasing Sigma. Even these long brush and matrix chains of lengths 6 and 12 N(e), respectively, (the entanglement length is N(e) similar to 85) give somewhat ambiguous results for the interfacial width, showing that studies of two or more nanoparticles are necessary to properly understand these miscibility issues. Entanglement between the brush and melt chains is identified using path analysis. We find that the number of entanglements between the brush and melt chains scale simply with the product of the local monomer densities of brush and melt chains.
C1 [Kalb, Joshua; Kumar, Sanat K.] Columbia Univ, Dept Chem Engn, New York, NY 10027 USA.
   [Dukes, Douglas] Rensselaer Polytech Inst, Dept Mat Sci & Engn, Troy, NY USA.
   [Hoy, Robert S.] Yale Univ, Dept Mech Engn & Mat Sci, New Haven, CT USA.
   [Grest, Gary S.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
RP Kumar, SK (reprint author), Columbia Univ, Dept Chem Engn, New York, NY 10027 USA.
EM sk2794@columbia.edu
RI Hoy, Robert/B-1169-2009
FU National Science Foundation [DMR05-20415, DMR-0835742]; Sandia National
   Laboratories; United States Department of Energy [DEAC04-94AL85000]; New
   York State Office of Science, Technology & Academic Research [C070119]
FX We thank the New Mexico Computing Application Center NMCAC for a
   generous allocation of computer time. Funding for this research at
   Columbia was provided by the National Science Foundation through a NIRT
   grant. Support from NSF Award Nos. DMR05-20415, DMR-0835742 is
   gratefully acknowledged. This work was performed, in part, at the Center
   for Integrated Nanotechnologies, a U.S. Department of Energy, Office of
   Basic Energy Sciences user facility. Supported, in part, by the
   Laboratory Directed Research and Development program at Sandia National
   Laboratories. Sandia is a multiprogram laboratory operated by Sandia
   Corporation, a Lockheed Martin Company, for the United States Department
   of Energy under Contract No. DEAC04-94AL85000. This material is based
   upon work supported, in part, by the New York State Office of Science,
   Technology & Academic Research under contract no. C070119.
NR 46
TC 57
Z9 57
U1 5
U2 65
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 4
BP 1418
EP 1425
DI 10.1039/c0sm00725k
PG 8
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 718AM
UT WOS:000287091600022
ER

PT J
AU Yoo, SY
   Merzlyak, A
   Lee, SW
AF Yoo, So Young
   Merzlyak, Anna
   Lee, Seung-Wuk
TI Facile growth factor immobilization platform based on engineered phage
   matrices
SO SOFT MATTER
LA English
DT Article
ID SCANNING ELECTRON-MICROSCOPY; ARTIFICIAL JUXTACRINE STIMULATION;
   EXTRACELLULAR-MATRIX; CELL-ADHESION; BASEMENT-MEMBRANE; FILAMENTOUS
   PHAGE; PEPTIDE LIGANDS; HPQ SEQUENCE; STEM-CELLS; DISPLAY
AB Immobilized growth factors on tissue matrices play a critical role in controlling cell growth processes and cell morphology. We report a strategy for immobilizing growth factors on genetically engineered phage matrices for tissue regeneration. We modified M13 phages to express biotin-like peptides (HPQ) and/or integrin binding peptides (RGD) on their major and minor coat proteins. The resulting phages formed nanofibrous matrices that could easily immobilize growth factors FGFb and NGF. We demonstrated the synergistic roles of the growth factors and integrin binding peptides in controlling cell morphologies and growth. Our phage matrices, which can be easily functionalized with various ligands and growth factors, can be used as a convenient test bed for investigating the functions of various biochemical stimulants of numerous cell types.
C1 [Yoo, So Young; Merzlyak, Anna; Lee, Seung-Wuk] Univ Calif Berkeley, Lawrence Berkeley Lab, Phys Biosci Div, Berkeley Nanosci & Nanoengn Inst,Donner Lab 1 220, Berkeley, CA 94720 USA.
RP Lee, SW (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Phys Biosci Div, Berkeley Nanosci & Nanoengn Inst,Donner Lab 1 220, Berkeley, CA 94720 USA.
EM leesw@berkeley.edu
FU Hellman Family Faculty Fund; Berkeley Nanoscience and Nanoengineering
   Institute at the University of California, Berkeley; Lawrence Berkeley
   National Laboratory
FX We thank Professor David Schaffer for generously donating the neural
   progenitor cells. This work was supported by the Hellman Family Faculty
   Fund (SWL); start-up funds from the Berkeley Nanoscience and
   Nanoengineering Institute at the University of California, Berkeley
   (SWL); and the Laboratory Directed Research and Development fund from
   the Lawrence Berkeley National Laboratory.
NR 60
TC 16
Z9 18
U1 0
U2 12
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
EI 1744-6848
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 5
BP 1660
EP 1666
DI 10.1039/c0sm01220c
PG 7
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 724PN
UT WOS:000287588800015
ER

PT J
AU McEwan, ME
   Egorov, SA
   Ilavsky, J
   Green, DL
   Yang, Y
AF McEwan, Maura E.
   Egorov, Sergei A.
   Ilavsky, Jan
   Green, David L.
   Yang, Yang
TI Mechanical reinforcement of polymer nanocomposites: theory and
   ultra-small angle X-ray scattering (USAXS) studies
SO SOFT MATTER
LA English
DT Article
ID ORDER PHASE-TRANSITIONS; PARTICLES; HARD; EQUATION; SPHERES;
   MICROSTRUCTURE; SUSPENSIONS; FLUIDS; STATE; NANOPARTICLES
AB The microstructure of polymer-grafted nanoparticles in polymer melts that are chemically identical to the brush was investigated using ultra-small angle X-ray scattering (USAXS). The dispersions were thermodynamically stable. Particle size and melt molecular weight were varied such that the particle softness, L*, or the ratio of the brush thickness to the particle radius ranged from L* = 0.02-0.29. The experimentally extracted structure factors and radial distribution functions from USAXS show stronger particle interactions in lower molecular weight melts due to brush stretching corresponding to an enhancement in bulk properties at particle concentrations above the jamming transition. Good agreement was found between the measured structure factors and those predicted using the Percus-Yevick closure. Further, enhancement in the storage modulus, previously observed with rheology, was predicted through the Zwanzig-Mountain relation and Monte Carlo simulations. Overall, the use of USAXS and rheology enables the connection between experiment and theory to predict, and ultimately control the interactions of polymer-grafted nanoparticles in polymer melts.
C1 [McEwan, Maura E.; Green, David L.; Yang, Yang] Univ Virginia, Dept Chem Engn, Charlottesville, VA 22904 USA.
   [Egorov, Sergei A.] Univ Virginia, Dept Chem, Charlottesville, VA 22904 USA.
   [Ilavsky, Jan] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
RP Green, DL (reprint author), Univ Virginia, Dept Chem Engn, 102 Engineers Way, Charlottesville, VA 22904 USA.
EM dlgreen@virginia.edu
RI Egorov, Sergei/E-6061-2012; Ilavsky, Jan/D-4521-2013; USAXS,
   APS/D-4198-2013
OI Ilavsky, Jan/0000-0003-1982-8900; 
FU US Department of Energy, Office of Science, Office of Basic Energy
   Sciences [DE-AC02-06CH11357]; National Science Foundation Division of
   Chemical, Bioengineering, Environment and Transport Systems
   [CBET-0644890]; Old Dominion University Research Foundation; Alexander
   von Humboldt Foundation
FX Use of the Advanced Photon Source was supported by the US Department of
   Energy, Office of Science, Office of Basic Energy Sciences, under
   Contract No. DE-AC02-06CH11357. This research was supported by the
   National Science Foundation Division of Chemical, Bioengineering,
   Environment and Transport Systems (CBET-0644890) and the Old Dominion
   University Research Foundation. S. A. E. acknowledges Alexander von
   Humboldt Foundation for financial support.
NR 47
TC 13
Z9 13
U1 1
U2 20
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
EI 1744-6848
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 6
BP 2725
EP 2733
DI 10.1039/c0sm00393j
PG 9
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 732CX
UT WOS:000288162500063
ER

PT J
AU Liu, HQ
   Bachand, GD
AF Liu, Haiqing
   Bachand, George D.
TI Understanding energy dissipation and thermodynamics in biomotor-driven
   nanocomposite assemblies
SO SOFT MATTER
LA English
DT Article
ID FLEXURAL RIGIDITY; KINESIN; MICROTUBULES; TRANSPORT; DYNAMICS; MOTORS;
   STEP
AB We report a bimolecular motor-driven, dynamic self-assembly system in which the thermodynamic (biotin-streptavidin bond formation) and energy dissipative (ATP catalysis) components can systematically be varied to achieve several morphologically distinct nanocomposite structures consisting of microtubules and semiconductor nanocrystals.
C1 [Bachand, George D.] Sandia Natl Labs, Ctr Integrated Nanotechnol, Albuquerque, NM 87185 USA.
   [Liu, Haiqing] Sandia Natl Labs, Surface & Interface Sci Dept, Albuquerque, NM 87185 USA.
RP Bachand, GD (reprint author), Sandia Natl Labs, Ctr Integrated Nanotechnol, POB 5800, Albuquerque, NM 87185 USA.
EM gdbacha@sandia.gov
FU US Department of Energy, Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering [KC0203010]; US Department of
   Energy's National Nuclear Security Administration [DE-AC04-94AL85000]
FX We thank Andy Boal, Bruce Bunker, Darryl Sasaki, and Marlene Bachand for
   helpful discussion and comments on this manuscript, and Dr Joe Howard
   for generously providing the Drosophila kinesin expression clone. This
   research was supported by the US Department of Energy, Office of Basic
   Energy Sciences, Division of Materials Sciences and Engineering, Project
   KC0203010. Sandia National Laboratories is a multi-program laboratory
   operated by Sandia Corporation, a wholly owned subsidiary of Lockheed
   Martin Company, for the US Department of Energy's National Nuclear
   Security Administration under contract DE-AC04-94AL85000.
NR 33
TC 9
Z9 9
U1 5
U2 12
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 7
BP 3087
EP 3091
DI 10.1039/c0sm01106a
PG 5
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 738XZ
UT WOS:000288677200007
ER

PT J
AU Xu, J
   Russell, TP
   Ocko, BM
   Checco, A
AF Xu, Ji
   Russell, Thomas P.
   Ocko, Benjamin M.
   Checco, Antonio
TI Block copolymer self-assembly in chemically patterned squares
SO SOFT MATTER
LA English
DT Article
ID SINGLE-LAYER FILMS; DIBLOCK COPOLYMER; NANOPATTERNED SURFACES;
   THIN-FILMS; ARRAYS; LITHOGRAPHY; CYLINDERS; NANOSTRUCTURES;
   GRAPHOEPITAXY; TEMPLATES
AB The self-assembly of block copolymers thin films laterally confined within square geometries that are incompatible with the bulk packing symmetry of the block copolymer microdomains is investigated. The lateral confinement is provided by chemical patterns made by oxidation nanolithography of octadecyltrichlorosilane-coated silicon surfaces. We find that the size and shape of the confinement affect the order of the block copolymer microdomains and their packing symmetries. Specifically, if the size of the square pattern is smaller than the characteristic grain size the hexagonally packed microdomains form a single-crystal oriented along the edges of the pattern and with "edge-boundaries" located preferentially at the perimeter of the pattern. If the size of the pattern is comparable with the natural bulk period of the copolymer, the packing symmetry changes from hexagonal to square. In this case the ordering induced by the pattern edges becomes dominant allowing the square lattice to be more stable than the hexagonal one.
C1 [Xu, Ji; Russell, Thomas P.] Univ Massachusetts, Dept Polymer Sci & Engn, Amherst, MA 01003 USA.
   [Ocko, Benjamin M.; Checco, Antonio] Brookhaven Natl Lab, Condensed Matter Phys & Mat Sci Dept, Upton, NY 11973 USA.
RP Russell, TP (reprint author), Univ Massachusetts, Dept Polymer Sci & Engn, Amherst, MA 01003 USA.
EM russell@mail.pse.umass.edu; checco@bnl.gov
FU U.S. Department of Energy, Basic Energy Sciences, Materials Sciences and
   Engineering Division; Materials Research Science and Engineering Center;
   Center on Functional Engineered Nano Architectonics
FX Research supported by the U.S. Department of Energy, Basic Energy
   Sciences, Materials Sciences and Engineering Division (A.C., B.M.O.,
   T.P.R.), by the Materials Research Science and Engineering Center
   (J.X.), and by the Center on Functional Engineered Nano Architectonics
   (J.X.).
NR 32
TC 28
Z9 28
U1 1
U2 28
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 8
BP 3915
EP 3919
DI 10.1039/c0sm01066a
PG 5
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 745NZ
UT WOS:000289173500035
ER

PT J
AU Wang, X
   Beers, KM
   Kerr, JB
   Balsara, NP
AF Wang, Xin
   Beers, Keith M.
   Kerr, John B.
   Balsara, Nitash P.
TI Conductivity and water uptake in block copolymers containing protonated
   polystyrene sulfonate and their imidazolium salts
SO SOFT MATTER
LA English
DT Article
ID POLYMER ELECTROLYTE MEMBRANES; FUEL-CELL MEMBRANES; MICROPHASE
   SEPARATION; MOLECULAR-WEIGHT; HUMID AIR; NAFION; TRANSPORT; EXCHANGE;
   NANOCHANNELS; TEMPERATURE
AB There is considerable interest in the properties of polymer electrolyte membranes due to their presence in fuel cells. In this paper, we report on the ionic conductivity and degree of hydration, l, of model membranes composed of polystyrene sulfonate-b-polymethylbutylene (PSS-PMB) copolymers and their imidazolium salts (PSI-PMB). The membranes were in intimate contact with humid air, and their properties were studied as a function of temperature and relative humidity of the air (RH 50 and 98%). All of the samples have a lamellar structure in the dry state, and lambda = 14 +/- 2 for PSS-PMB and PSI-PMB at RH 98%. However, the conductivity behaviors of PSS-PMB and PSI-PMB are very different. The normalized conductivity, sigma(n) (the normalization accounts for small differences in the ion concentrations in the different samples), of PSS-PMB is highly history-dependent and equilibrated behavior is only seen when the samples are annealed at high temperature (80 degrees C) for long times (about 24 h). In contrast, the equilibrated behavior is obtained rapidly in PSI-PMB samples over the entire temperature window (25-90 degrees C). At RH 98%, the equilibrated conductivities of the PSI-PMB samples at RH 98% were independent of sample molecular weight and within the experimental error of that obtained from the high molecular weight PSS-PMB sample. The low molecular weight PSS-PMB sample exhibited higher conductivity than the three samples described above. At RH = 50% both PSS-PMB and PSI-PMB samples were relatively dry with lambda < 5 over the accessible temperature window. In the dry state (1) PSS-PMB samples exhibited slow kinetics while PSI-PMB samples equilibrated rapidly, (2) molecular weight had no effect on conductivity in both PSS-PMB and PSI-PMB samples, and (3) the conductivities of PSI-PMB were significantly lower than those of PSS-PMB.
C1 [Beers, Keith M.; Kerr, John B.; Balsara, Nitash P.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Wang, Xin; Balsara, Nitash P.] Univ Calif Berkeley, Lawrence Berkeley Lab, Environm Energy Technol Div, Berkeley, CA 94720 USA.
   [Wang, Xin; Beers, Keith M.; Balsara, Nitash P.] Univ Calif Berkeley, Dept Chem & Biomol Engn, Berkeley, CA 94720 USA.
RP Kerr, JB (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
EM nbalsara@berkeley.edu
FU Office of Science of the U.S. Department of Energy through both the
   Office of Basic Energy Sciences, Materials Sciences and Engineering
   Division [DE-AC02-05CH11231]; Energy Efficiency and Renewable Energy
   Division; Department of Energy, Office of Basic Energy Sciences, User
   Facilities Division
FX This work was supported by the Director, Office of Science of the U.S.
   Department of Energy under Contract No. DE-AC02-05CH11231 through both
   the Office of Basic Energy Sciences, Materials Sciences and Engineering
   Division (XW, KB, NB) and the Fuel Cell Technologies Program, Energy
   Efficiency and Renewable Energy Division (XW, JK). The SAXS experiments
   were performed at the Advanced Light Source, Lawrence Berkeley National
   Laboratory, a DOE national user facility supported by the Department of
   Energy, Office of Basic Energy Sciences, User Facilities Division, under
   the same contract.
NR 41
TC 4
Z9 4
U1 3
U2 21
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
EI 1744-6848
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 9
BP 4446
EP 4452
DI 10.1039/c0sm01520b
PG 7
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 751QZ
UT WOS:000289634000048
ER

PT J
AU Wang, XJ
   Hong, KL
   Baskaran, D
   Goswami, M
   Sumpter, B
   Mays, J
AF Wang, Xiaojun
   Hong, Kunlun
   Baskaran, Durairaj
   Goswami, Monojoy
   Sumpter, Bobby
   Mays, Jimmy
TI Asymmetrical self-assembly from fluorinated and sulfonated block
   copolymers in aqueous media
SO SOFT MATTER
LA English
DT Article
ID DIBLOCK COPOLYMERS; MULTICOMPARTMENT MICELLES; MORPHOLOGICAL-CHANGES;
   SEGREGATION REGIME; DILUTE-SOLUTION; PHASE-BEHAVIOR; SINGLE-CHAIN;
   POLYSTYRENE; POLYMERS; WATER
AB Block copolymers of fluorinated isoprene and partially sulfonated styrene form novel tapered rods and ribbon-like micelles in aqueous media due to a distribution of sulfonation sites and a large Flory-Huggins interaction parameter. A combination of microscopy, light scattering, and simulation demonstrates the presence of these unique nanostructures. This study sheds light on the micellization behavior of amphiphilic block polymers by revealing a new mechanism of self-assembly.
C1 [Wang, Xiaojun; Baskaran, Durairaj; Mays, Jimmy] Univ Tennessee, Dept Chem, Knoxville, TN 37996 USA.
   [Hong, Kunlun; Sumpter, Bobby; Mays, Jimmy] Oak Ridge Natl Lab, Ctr Nanophase Mat Sci, Oak Ridge, TN 37831 USA.
   [Goswami, Monojoy; Sumpter, Bobby] Oak Ridge Natl Lab, Comp Sci & Math Div, Oak Ridge, TN 37831 USA.
RP Mays, J (reprint author), Univ Tennessee, Dept Chem, Knoxville, TN 37996 USA.
EM jimmymays@utk.edu
RI Wang, Xiaojun/E-5510-2012; Goswami, Monojoy/G-7943-2012; Sumpter,
   Bobby/C-9459-2013; Durairaj, Baskaran/C-3692-2009; Hong,
   Kunlun/E-9787-2015
OI Goswami, Monojoy/0000-0002-4473-4888; Sumpter,
   Bobby/0000-0001-6341-0355; Durairaj, Baskaran/0000-0002-6886-5604; Hong,
   Kunlun/0000-0002-2852-5111
FU U.S. Department of Energy Basic Energy Sciences, MSE Division; ORNL by
   BSE/DOE
FX We appreciate help from Tom Malmgren and John Dunlap at the University
   of Tennessee. This research was supported by the U.S. Department of
   Energy Basic Energy Sciences, MSE Division and performed in part at the
   Center for Nanophase Materials Sciences CKHI, sponsored at ORNL by
   BSE/DOE.
NR 47
TC 8
Z9 8
U1 0
U2 18
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 18
BP 7960
EP 7964
DI 10.1039/c1sm06040f
PG 5
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 814JW
UT WOS:000294447600009
ER

PT J
AU Hur, SM
   Frischknecht, AL
   Huber, DL
   Fredrickson, GH
AF Hur, Su-Mi
   Frischknecht, Amalie L.
   Huber, Dale L.
   Fredrickson, Glenn H.
TI Self-consistent field simulations of self- and directed-assembly in a
   mixed polymer brush
SO SOFT MATTER
LA English
DT Article
ID COPOLYMER THIN-FILMS; STRONG-STRETCHING THEORY; BLOCK-COPOLYMER; DIBLOCK
   COPOLYMER; MICROPHASE SEPARATION; MATERIALS SCIENCE; MEMORY; PATTERNS;
   DENSITY; LAYER
AB While self-assembling block copolymer thin films have attracted attention as a promising high resolution lithographic tool, the self assembly of mixed polymer brushes for lithography is relatively unexplored. Here we study the directed self-assembly of a mixed polymer brush using self-consistent field theory (SCFT) simulations. Using the model equations and numerical methods introduced and verified in our previous study, the bulk phase behavior of a mixed melt brush is studied in depth through full three dimensional calculations. We assume that the mixed A/B polymer chains, which are of the same length, are exposed to a neutral top surface and are uniformly grafted at a high density. We identify phase-separated morphologies and calculate a phase diagram for the mixed brush under melt conditions as a function of the segregation force and composition. The observed lateral microphase separation is similar to that in block copolymer thin films, but the phase separation occurs at a smaller segregation force and the transition between cylindrical and spherical morphologies are quite different than the first-order phase transition in block copolymers. We demonstrate that lateral confinement can induce long-range, in-plane order in mixed brushes and suggest promising directed self-assembly methods for the application of self-assembled mixed polymer brushes in next-generation information storage and electronic devices.
C1 [Hur, Su-Mi; Fredrickson, Glenn H.] Univ Calif Santa Barbara, Dept Chem Engn, Santa Barbara, CA 93106 USA.
   [Frischknecht, Amalie L.; Huber, Dale L.] Sandia Natl Labs, Ctr Integrated Nanotechnol, Albuquerque, NM 87185 USA.
   [Fredrickson, Glenn H.] Univ Calif Santa Barbara, Dept Mat, Santa Barbara, CA 93106 USA.
   [Hur, Su-Mi; Fredrickson, Glenn H.] Univ Calif Santa Barbara, Mat Res Lab, Santa Barbara, CA 93106 USA.
RP Hur, SM (reprint author), Univ Calif Santa Barbara, Dept Chem Engn, Santa Barbara, CA 93106 USA.
RI Frischknecht, Amalie/N-1020-2014; Huber, Dale/A-6006-2008
OI Frischknecht, Amalie/0000-0003-2112-2587; Huber,
   Dale/0000-0001-6872-8469
FU U.S. Department of Energy [DE-AC04-94AL85000]; Sandia LDRD program;
   MARCO Center on Functional Engineered Nano Architectonics (FENA)
FX SH would like to thank T. L. Chantawansri and K. Delaney for useful
   discussions. This work was performed, in part, at the Center for
   Integrated Nanotechnologies, a U.S. Department of Energy, Office of
   Basic Energy Sciences user facility. Sandia National Laboratories is a
   multi-program laboratory operated by Sandia Corporation, a
   Lockheed-Martin Company, for the U.S. Department of Energy under
   Contract No. DE-AC04-94AL85000. Partial support was also provided from
   the Sandia LDRD program and from the MARCO Center on Functional
   Engineered Nano Architectonics (FENA).
NR 48
TC 19
Z9 19
U1 0
U2 28
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 19
BP 8776
EP 8788
DI 10.1039/c1sm05747b
PG 13
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 822YE
UT WOS:000295085700014
ER

PT J
AU Li, MD
   Chu, XQ
   Fratini, E
   Baglioni, P
   Alatas, A
   Alp, EE
   Chen, SH
AF Li, Mingda
   Chu, Xiang-qiang
   Fratini, Emiliano
   Baglioni, Piero
   Alatas, Ahmet
   Alp, E. Ercan
   Chen, Sow-Hsin
TI Phonon-like excitation in secondary and tertiary structure of hydrated
   protein powders
SO SOFT MATTER
LA English
DT Article
ID X-RAY-SCATTERING; COLLECTIVE DYNAMICS; NEUTRON-SCATTERING; ENERGY
   RESOLUTION; WATER; CASEIN; TRANSITION; SOFT
AB Existence of sub-thermal collective excitations in proteins is of great interest due to its possible close coupling with the onset of their biological functions. We use high-energy resolution inelastic X-ray scattering to directly measure phonon dispersion relations and their damping in two hydrated proteins, alpha-chymotrypsinogen A and casein, differing in their secondary and tertiary structures. We observe that specific phonons in the Q range 28-30 nm(-1) are markedly softened only above T-D = 220 K, the observed protein dynamic transition temperature. This might indicate that only phonon modes within the wavelengths in the length scale comparable to the secondary structure dimension could be linked to the onset of protein biological activity. We also infer that the presence of tertiary structure contributes little to the population of phonons, while the alpha-helix seems to be the major contributor to phonons propagation.
C1 [Li, Mingda; Chu, Xiang-qiang; Chen, Sow-Hsin] MIT, Dept Nucl Sci & Engn, Cambridge, MA 02139 USA.
   [Fratini, Emiliano; Baglioni, Piero] Univ Florence, Dept Chem, I-50019 Florence, Italy.
   [Fratini, Emiliano; Baglioni, Piero] Univ Florence, CSGI, I-50019 Florence, Italy.
   [Alatas, Ahmet; Alp, E. Ercan] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
RP Chen, SH (reprint author), MIT, Dept Nucl Sci & Engn, 77 Massachusetts Ave, Cambridge, MA 02139 USA.
EM sowhsin@mit.edu
RI Baglioni, Piero/B-1208-2011; Fratini, Emiliano/C-9983-2010; Chu,
   Xiangqiang/A-1572-2011; 
OI Baglioni, Piero/0000-0003-1312-8700; Fratini,
   Emiliano/0000-0001-7104-6530; Chu, Xiang-qiang/0000-0003-4320-5316
FU Basic Energy Sciences Division of US DOE [DE-FG02-90ER45429]; U.S.
   Department of Energy, Office of Science, Office of Basic Energy Sciences
   [DE-AC02-06CH11357]; Ministero dell'Istruzione, Universita e della
   Ricerca Scientifica (MIUR) [prot. 20087K9A2J, FIRB-RBPR05JH2P007
   Italnanonet]; Consorzio Interuniversitario per lo Sviluppo dei Sistemi a
   Grande Interfase (CSGI)
FX This research at MIT is supported by a grant from Basic Energy Sciences
   Division of US DOE DE-FG02-90ER45429. The work at the Advanced Photon
   Source was supported by the U.S. Department of Energy, Office of
   Science, Office of Basic Energy Sciences, under Contract No.
   DE-AC02-06CH11357. Emiliano Fratini and Piero Baglioni acknowledge the
   financial support from Ministero dell'Istruzione, Universita e della
   Ricerca Scientifica (MIUR, grant PRIN-2008, prot. 20087K9A2J, and
   FIRB-RBPR05JH2P007 Italnanonet) and Consorzio Interuniversitario per lo
   Sviluppo dei Sistemi a Grande Interfase (CSGI).
NR 31
TC 7
Z9 7
U1 0
U2 10
PU ROYAL SOC CHEMISTRY
PI CAMBRIDGE
PA THOMAS GRAHAM HOUSE, SCIENCE PARK, MILTON RD, CAMBRIDGE CB4 0WF, CAMBS,
   ENGLAND
SN 1744-683X
J9 SOFT MATTER
JI Soft Matter
PY 2011
VL 7
IS 21
BP 9848
EP 9853
DI 10.1039/c1sm05954h
PG 6
WC Chemistry, Physical; Materials Science, Multidisciplinary; Physics,
   Multidisciplinary; Polymer Science
SC Chemistry; Materials Science; Physics; Polymer Science
GA 835HH
UT WOS:000296026700005
ER

PT S
AU Corley, CD
   Mihalcea, R
   Mikler, AR
   Sanfilippo, AP
AF Corley, Courtney D.
   Mihalcea, Rada
   Mikler, Armin R.
   Sanfilippo, Antonio P.
BE Arabnia, HR
   Tran, QN
TI Predicting Individual Affect of Health Interventions to Reduce HPV
   Prevalence
SO SOFTWARE TOOLS AND ALGORITHMS FOR BIOLOGICAL SYSTEMS
SE Advances in Experimental Medicine and Biology
LA English
DT Article; Book Chapter
DE Computational epidemiology; Data mining; Epidemic models; Health
   informatics; Public health; Sentiment analysis
ID HUMAN-PAPILLOMAVIRUS; COST-EFFECTIVENESS; VACCINE; BEHAVIOR; IMPACT;
   MODEL; POPULATION; INFECTIONS; CANCER
AB Recently, human papilloma virus (HPV) has been implicated to cause several throat and oral cancers and HPV is established to cause most cervical cancers. A human papilloma virus vaccine has been proven successful to reduce infection incidence in FDA clinical trials, and it is currently available in the USA. Current intervention policy targets adolescent females for vaccination; however, the expansion of suggested guidelines may extend to other age groups and males as well. This research takes a first step towards automatically predicting personal beliefs, regarding health intervention, on the spread of disease. Using linguistic or statistical approaches, sentiment analysis determines a text's affective content. Self-reported HPV vaccination beliefs published in web and social media are analyzed for affect polarity and leveraged as knowledge inputs to epidemic models. With this in mind, we have developed a discrete-time model to facilitate predicting impact on the reduction of HPV prevalence due to arbitrary age- and gender-targeted vaccination schemes.
C1 [Corley, Courtney D.; Sanfilippo, Antonio P.] Pacific NW Natl Lab, Richland, WA 99352 USA.
   [Mihalcea, Rada; Mikler, Armin R.] Univ N Texas, Dept Comp Sci & Engn, Denton, TX 76203 USA.
RP Corley, CD (reprint author), Pacific NW Natl Lab, Richland, WA 99352 USA.
EM court@pnl.gov; rada@cs.unt.edu; mikler@unt.edu;
   antonio.sanfilippo@pnl.gov
RI Sanfilippo, Antonio/B-6743-2016
OI Sanfilippo, Antonio/0000-0001-7097-4562
NR 19
TC 2
Z9 2
U1 1
U2 7
PU SPRINGER-VERLAG BERLIN
PI BERLIN
PA HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY
SN 0065-2598
BN 978-1-4419-7045-9
J9 ADV EXP MED BIOL
JI Adv.Exp.Med.Biol.
PY 2011
VL 696
BP 181
EP 190
DI 10.1007/978-1-4419-7046-6_18
D2 10.1007/978-1-4419-7046-6
PG 10
WC Biology; Mathematical & Computational Biology; Medicine, Research &
   Experimental
SC Life Sciences & Biomedicine - Other Topics; Mathematical & Computational
   Biology; Research & Experimental Medicine
GA BUK92
UT WOS:000289694000018
PM 21431558
ER

PT J
AU Haddix, ML
   Plante, AF
   Conant, RT
   Six, J
   Steinweg, JM
   Magrini-Bair, K
   Drijber, RA
   Morris, SJ
   Paul, EA
AF Haddix, Michelle L.
   Plante, Alain F.
   Conant, Richard T.
   Six, Johan
   Steinweg, J. Megan
   Magrini-Bair, Kim
   Drijber, Rhae A.
   Morris, Sherri J.
   Paul, Eldor A.
TI The Role of Soil Characteristics on Temperature Sensitivity of Soil
   Organic Matter
SO SOIL SCIENCE SOCIETY OF AMERICA JOURNAL
LA English
DT Article
ID IONIZATION MASS-SPECTROMETRY; ARCTIC TUNDRA SOILS; NITROGEN
   MINERALIZATION; CARBON MINERALIZATION; MICROBIAL RESPIRATION; HIGHLAND
   SOILS; CLIMATE-CHANGE; CO2 EMISSIONS; FOREST SOILS; PY-MBMS
AB The uncertainty associated with how projected climate change will affect global C cycling could have a large impact on predictions of soil C stocks. The purpose of our study was to determine how various soil decomposition and chemistry characteristics relate to soil organic matter (SOM) temperature sensitivity. We accomplished this objective using long-term soil incubations at three temperatures (15, 25, and 35 degrees C) and pyrolysis molecular beam mass spectrometry (py-MBMS) on 12 soils from 6 sites along a mean annual temperature (MAT) gradient (2-25.6 degrees C). The Q(10) values calculated from the CO(2) respired during a long-term incubation using the Q(10-q) method showed decomposition of the more resistant fraction to be more temperature sensitive with a Q(10-q) of 1.95 +/- 0.08 for the labile fraction and a Q(10-q) of 3.33 +/- 0.04 for the more resistant fraction. We compared the fit of soil respiration data using a two-pool model (active and slow) with first-order kinetics with a three-pool model and found that the two and three-pool models statistically fit the data equally well. The three-pool model changed the size and rate constant for the more resistant pool. The size of the active pool in these soils, calculated using the two-pool model, increased with incubation temperature and ranged from 0.1 to 14.0% of initial soil organic C. Sites with an intermediate MAT and lowest C/N ratio had the largest active pool. Pyrolysis molecular beam mass spectrometry showed declines in carbohydrates with conversion from grassland to wheat cultivation and a greater amount of protected carbohydrates in allophanic soils which may have lead to differences found between the total amount of CO(2) respired, the size of the active pool, and the Q(10-q) values of the soils.
C1 [Haddix, Michelle L.; Steinweg, J. Megan] Colorado State Univ, Nat Resource Ecol Lab, Grad Degree Program Ecol, Ft Collins, CO 80523 USA.
   [Plante, Alain F.] Univ Penn, Dep Earth & Environm Sci, Philadelphia, PA 19104 USA.
   [Six, Johan] Univ Calif Davis, Dep Plant Sci, Davis, CA 95616 USA.
   [Magrini-Bair, Kim] Natl Renewable Energy Lab, Golden, CO 80401 USA.
   [Drijber, Rhae A.] Univ Nebraska, Dep Agron & Hort, Lincoln, NE 68583 USA.
   [Morris, Sherri J.] Bradley Univ, Dept Biol, Peoria, IL 61625 USA.
   [Paul, Eldor A.] Colorado State Univ, Nat Resource Ecol Lab, Dep Soil & Crop Sci, Ft Collins, CO 80523 USA.
RP Haddix, ML (reprint author), Colorado State Univ, Nat Resource Ecol Lab, Grad Degree Program Ecol, 200 W Lake St, Ft Collins, CO 80523 USA.
EM mlhaddix@nrel.colostate.edu
RI Plante, Alain/C-3498-2008; Conant, Richard/B-7586-2013; 
OI Plante, Alain/0000-0003-0124-6187; Conant, Richard/0000-0001-7315-2476;
   Haddix, Michelle/0000-0003-0984-0404
FU Office of Science (BER); U.S. Department of Energy; National Science
   Foundation [DEB-0444880]
FX M. Vigil, R. Teague, D. Tanaka, C. C. Cerri, and C. E. P Cerri assisted
   with site selection and sampling. Rebecca Greenwood, Jenny Carlson, Matt
   Carpenter, and Jeremy Schulman assisted in laboratory measurements. This
   research was supported by the Office of Science (BER), U.S. Department
   of Energy and a National Science Foundation grant DEB-0444880.
NR 60
TC 39
Z9 39
U1 4
U2 77
PU SOIL SCI SOC AMER
PI MADISON
PA 677 SOUTH SEGOE ROAD, MADISON, WI 53711 USA
SN 0361-5995
J9 SOIL SCI SOC AM J
JI Soil Sci. Soc. Am. J.
PD JAN
PY 2011
VL 75
IS 1
BP 56
EP 68
DI 10.2136/sssaj2010.0118
PG 13
WC Soil Science
SC Agriculture
GA 698VG
UT WOS:000285620700009
ER

PT S
AU Bower, W
AF Bower, Ward
BE Tachibana, Y
TI Solar Energy Grid Integration Systems (SEGIS) Adding functionality while
   maintaining reliability and economics
SO SOLAR HYDROGEN AND NANOTECHNOLOGY VI
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Solar Hydrogen and Nanotechnology VI
CY AUG 23-25, 2011
CL San Diego, CA
SP SPIE, RMIT Univ, Platform Technol Res Inst
DE SEGIS; inverter; PV systems; smart grid; interconnect; VAr support;
   communications; energy management
AB An overview of the activities and progress made during the US DOE Solar Energy Grid Integration Systems (SEGIS) solicitation, while maintaining reliability and economics is provided. The SEGIS R&D opened pathways for interconnecting PV systems to intelligent utility grids and micro-grids of the future. In addition to new capabilities are "value added" features. The new hardware designs resulted in smaller, less material-intensive products that are being viewed by utilities as enabling dispatchable generation and not just unpredictable negative loads. The technical solutions enable "advanced integrated system" concepts and "smart grid" processes to move forward in a faster and focused manner. The advanced integrated inverters/controllers can now incorporate energy management functionality, intelligent electrical grid support features and a multiplicity of communication technologies. Portals for energy flow and two-way communications have been implemented. SEGIS hardware was developed for the utility grid of today, which was designed for one-way power flow, for intermediate grid scenarios, AND for the grid of tomorrow, which will seamlessly accommodate managed two-way power flows as required by large-scale deployment of solar and other distributed generation. The SEGIS hardware and control developed for today meets existing standards and codes AND provides for future connections to a "smart grid" mode that enables utility control and optimized performance.
C1 Sandia Natl Labs, Albuquerque, NM 87185 USA.
RP Bower, W (reprint author), Sandia Natl Labs, MS0734, Albuquerque, NM 87185 USA.
EM wibower@sandia.gov
NR 8
TC 0
Z9 0
U1 0
U2 3
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-81948-719-3
J9 PROC SPIE
PY 2011
VL 8109
BP IX
EP XIV
AR 811202
DI 10.1117/12.915598
PG 6
WC Chemistry, Applied; Nanoscience & Nanotechnology; Optics
SC Chemistry; Science & Technology - Other Topics; Optics
GA BXY05
UT WOS:000297588100001
ER

PT S
AU Vasseur, R
   Lookman, T
AF Vasseur, Romain
   Lookman, Turab
BE Brechet, Y
   Clouet, E
   Deschamps, A
   Finel, A
   Soisson, F
TI Spin Models for Ferroelastics: Towards a Spin Glass Description of
   Strain Glass
SO SOLID-SOLID PHASE TRANSFORMATIONS IN INORGANIC MATERIALS, PTS 1-2
SE Solid State Phenomena
LA English
DT Proceedings Paper
CT International Conference on Solid-Solid Phase Transformations in
   Inorganic Materials (PTM 2010)
CY JUN 06-11, 2010
CL Avignon, FRANCE
SP Mat & Process Sci & Engn Lab, CEA, Tranverse Programme Adv Mat, French Aerospace Lab, Inst Chem, Natl Ctr Sci Res, French Phase Field Network, Lab Etude Microstructures
DE Ferroelastic Transitions; Strain Glass; Spin Glass Models
ID CRYSTAL-FIELD
AB We review the description of ferroelastic transitions in terms of spin models. We show how one can systematically obtain a pseudo-spin Hamiltonian from the Landau energy describing the first order transition between Austenite/Martensite phases. It is shown that a Local Mean-field approximation predicts the same microstructure as the continuous Landau model in terms of strain variables. This method can be applied to a wide range of two and three dimensional transitions. We then demonstrate how quenched disorder in such pseudo-spin models yields the existence of a glass phase, characterized by the Edwards-Anderson order parameter. Our approach uses Mean-field approximation and Monte-Carlo simulations (using Zero Field Cooling/Field Cooling experiments) to study the influence of the long-range interactions. Although our model captures the salient features of a ferroelastic material in the presence of disorder, the influence of the disorder on the high symmetry austenite phase is not quite consistent with expected behavior. We examine different means of introducing disorder that can improve upon the results.
C1 [Vasseur, Romain] CEA Saclay, Inst Phys Theor, F-91191 Gif Sur Yvette, France.
   [Vasseur, Romain] Ecole Normale Super, LPTENS, F-75231 Paris, France.
   [Lookman, Turab] Los Alamos Natl Lab, Theoret Div, Los Alamos, NM 87454 USA.
RP Vasseur, R (reprint author), CEA Saclay, Inst Phys Theor, F-91191 Gif Sur Yvette, France.
EM romain.vasseur@lpt.ens.fr; txl@lanl.gov
OI Lookman, Turab/0000-0001-8122-5671
FU Department of Energy [DE-AC52-06NA25396]
FX We are grateful to the Center for Nonlinear Science at Los Alamos
   National Laboratory for summer student support for RV during 2009 and
   the Department of Energy under Contract No. DE-AC52-06NA25396.
   Discussions with M. Porta, A. Saxena and S.R. Shenoy are also
   acknowledged.
NR 15
TC 0
Z9 0
U1 0
U2 5
PU TRANS TECH PUBLICATIONS LTD
PI DURNTEN-ZURICH
PA KREUZSTRASSE 10, 8635 DURNTEN-ZURICH, SWITZERLAND
SN 1012-0394
J9 SOLID STATE PHENOMEN
PY 2011
VL 172-174
BP 1078
EP +
DI 10.4028/www.scientific.net/SSP.172-174.1078
PN 1
PG 2
WC Materials Science, Multidisciplinary; Physics, Condensed Matter
SC Materials Science; Physics
GA BZY35
UT WOS:000303359700167
ER

PT S
AU Souza, SWD
   Rai, A
   Nayak, J
   Maniraj, M
   Dhaka, RS
   Barman, SR
   Schlagel, DL
   Lograsso, TA
AF Souza, S. W. D'
   Rai, Abhishek
   Nayak, J.
   Maniraj, M.
   Dhaka, R. S.
   Barman, S. R.
   Schlagel, D. L.
   Lograsso, T. A.
BE Garg, AB
   Mittal, R
   Mukhopadhyay, R
TI Modulation on Ni2MnGa(001) surface
SO SOLID STATE PHYSICS: PROCEEDINGS OF THE 55TH DAE SOLID STATE PHYSICS
   SYMPOSIUM 2010, PTS A AND B
SE AIP Conference Proceedings
LA English
DT Proceedings Paper
CT 55th Symposium on DAE Solid State Physics (SSPS)
CY DEC 26-30, 2010
CL Manipal Univ, Manipal, INDIA
SP Govt India, Dept Atom Energy (DAE), Board Res Nucl Sci (BRNS)
HO Manipal Univ
DE Low-energy electron diffraction; Commensurate-incommensurate
   transformations
AB We report periodic modulation on (001) surface of Ni2MnGa ferromagnetic shape memory alloy. For the stoichiometric surface, analysis of the low energy electron diffraction (LEED) spot profiles shows that the modulation is incommensurate. The modulation appears at 200K, concomitant with the first order structural transition to the martensitic phase.
C1 [Souza, S. W. D'; Rai, Abhishek; Nayak, J.; Maniraj, M.; Dhaka, R. S.; Barman, S. R.] UGC DAE Consortium Sci Res, Khandwa Rd, Indore 452001, Madhya Pradesh, India.
   [Schlagel, D. L.; Lograsso, T. A.] Lowa State Univ, US DOE, Ames Lab, Ames, IA 50011 USA.
RP Souza, SWD (reprint author), UGC DAE Consortium Sci Res, Khandwa Rd, Indore 452001, Madhya Pradesh, India.
EM sunilwilfred@gmail.com
RI Dhaka, Rajendra/C-2486-2013; Roy Barman, Sudipta/B-2026-2010
NR 4
TC 0
Z9 0
U1 0
U2 1
PU AMER INST PHYSICS
PI MELVILLE
PA 2 HUNTINGTON QUADRANGLE, STE 1NO1, MELVILLE, NY 11747-4501 USA
SN 0094-243X
BN 978-0-7354-0905-7
J9 AIP CONF PROC
PY 2011
VL 1349
BP 767
EP +
DI 10.1063/1.3606084
PG 2
WC Physics, Condensed Matter
SC Physics
GA BZT87
UT WOS:000302939900362
ER

PT J
AU Swancutt, KL
   Mezyk, SP
   Tillotson, RD
   Pailloux, S
   Chakravarty, M
   Paine, RT
   Martin, LR
AF Swancutt, Katy L.
   Mezyk, Stephen P.
   Tillotson, Richard D.
   Pailloux, Sylvie
   Chakravarty, Manab
   Paine, Robert T.
   Martin, Leigh R.
TI Radiolytic Degradation in Lanthanide/Actinide Separation Ligands-NOPOPO:
   Radical Kinetics and Efficiencies Determinations
SO SOLVENT EXTRACTION AND ION EXCHANGE
LA English
DT Article
DE Solvent extraction; radiolysis; actinide lanthanide separation
ID SOLVENT-EXTRACTION; RADIATION-CHEMISTRY; TRIVALENT ACTINIDES;
   LACTIC-ACID; F-ELEMENTS; AMERICIUM(III); ARTICLE; TRIBUTYLPHOSPHATE;
   N,P,P'-TRIOXIDE; COMPLEXES
AB Trivalent lanthanide/actinide separations from used nuclear fuel occurs in the presence radiation fields that degrades the extraction ligands and solvents. Here we have investigated the stability of a new ligand for lanthanide/actinide separation; 2,6-bis[(di(2-ethylhexyl)phosphino)methyl] pyridine N,P,P-trioxide, TEH(NOPOPO). The impact of gamma-radiolysis on the distribution ratios for actinide (Am) and Lanthanide (Eu) extraction both in the presence and absence of an acidic aqueous phase by TEH(NOPOPO) was determined. Corresponding reaction rate constants for the two major radicals, hydroxyl and nitrate, were determined for TEH(NOPOPO) in the aqueous phase, with room temperature values of (3.49 +/- 0.10) x 10(9) and (1.95 +/- 0.15) x 10(8) M-1 s(-1), respectively. The activation energy for this reaction was found to be 30.2 +/- 4.1 kJ mol(-1). Rate constants for two analogues (2-methylphosphonic acid pyridine N, P-dioxide and 2,6-bis(methylphosphonic acid) pyridine N, P, P-trioxide) were also determined to assist in determining the major reaction pathways.
C1 [Swancutt, Katy L.; Mezyk, Stephen P.] Calif State Univ Long Beach, Dept Chem & Biochem, Long Beach, CA 90840 USA.
   [Tillotson, Richard D.; Martin, Leigh R.] Idaho Natl Lab, Aqueous Separat & Radiochem Dept, Idaho Falls, ID 83415 USA.
   [Pailloux, Sylvie; Chakravarty, Manab; Paine, Robert T.] Univ New Mexico, Dept Chem, Albuquerque, NM 87131 USA.
RP Mezyk, SP (reprint author), Calif State Univ Long Beach, Dept Chem & Biochem, 1250 Bellflower Blvd, Long Beach, CA 90840 USA.
EM smezyk@csulb.edu; leigh.martin@inl.gov
RI Martin, Leigh/P-3167-2016; 
OI Martin, Leigh/0000-0001-7241-7110; Pailloux, Sylvie/0000-0001-7318-7089
FU Office of Basic Energy Sciences, U.S. Department of Energy; University
   Nuclear Energy Research Initiative (UNERI) U.S. Department of Energy,
   Office of Nuclear Energy, under DOE Idaho Operations Office
   [DE-AC07-05ID14517]; DOE [DE-FC07-06ID14730]
FX The kinetics measurements described here were performed at the Radiation
   Laboratory, University of Notre Dame, which is supported by the Office
   of Basic Energy Sciences, U.S. Department of Energy. Steady-state
   irradiations were performed at Idaho National Laboratories. Support for
   this work was provided by the University Nuclear Energy Research
   Initiative (UNERI) U.S. Department of Energy, Office of Nuclear Energy,
   under DOE Idaho Operations Office Contract DE-AC07-05ID14517. UNM
   efforts were sponsored under DOE contract DE-FC07-06ID14730.
NR 32
TC 1
Z9 1
U1 1
U2 10
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0736-6299
J9 SOLVENT EXTR ION EXC
JI Solvent Extr. Ion Exch.
PY 2011
VL 29
IS 4
BP 637
EP 654
DI 10.1080/07366299.2011.581051
PG 18
WC Chemistry, Multidisciplinary
SC Chemistry
GA 883CX
UT WOS:000299611500007
ER

PT S
AU Brockman, RA
   Kramer, DP
   Barklay, CD
   Cairns-Gallimore, D
   Brown, JL
   Huling, JC
   Van Pelt, CE
AF Brockman, R. A.
   Kramer, D. P.
   Barklay, C. D.
   Cairns-Gallimore, D.
   Brown, J. L.
   Huling, J. C.
   Van Pelt, C. E.
BE Robertson, GA
TI Modeling of Selected Ceramic Processing Parameters Employed in the
   Fabrication of (PuO2)-Pu-238 Fuel Pellets
SO SPACE, PROPULSION AND ENERGY SCIENCES INTERNATIONAL FORUM
SE Physics Procedia
LA English
DT Proceedings Paper
CT Space, Propulsion and Energy Sciences International Forum
CY MAR 15-17, 2011
CL Univ Maryland, Coll Pk, MD
SP Inst Adv Studies Space, Prop & Energy Sci (IASSPES), Integr Res Inst (IRI), Amer Astronaut Soc, Astrosociol Res Inst, Nucl Plasma Soc
HO Univ Maryland
DE Sintering; Modeling; Plutonium-238 Dioxide; (PuO2)-Pu-238; RTG; GPHS
AB Recent deep space missions utilize the thermal output of the radioisotope plutonium-238 as the fuel in the thermal to electrical power system. Since the application of plutonium in its elemental state has several disadvantages, the fuel employed in these deep space power systems is typically in the oxide form such as plutonium-238 dioxide ((PuO2)-Pu-238). As an oxide, the processing of the plutonium dioxide into fuel pellets is performed via "classical" ceramic processing unit operations such as sieving of the powder, pressing, sintering, etc. Modeling of these unit operations can be beneficial in the understanding and control of processing parameters with the goal of further enhancing the desired characteristics of the (PuO2)-Pu-238 fuel pellets. A finite element model has been used to help identify the time-temperature-stress profile within a pellet during a furnace operation taking into account that (PuO2)-Pu-238 itself has a significant thermal output. Results of the modeling efforts will be discussed. (C) 2011 Published by Elsevier B.V. Selection and/or peer-review under responsibility of Institute for Advanced studies in Space, Propulsion and Energy Sciences
C1 [Brockman, R. A.; Kramer, D. P.; Barklay, C. D.] Univ Dayton, Dayton, OH 45469 USA.
   [Van Pelt, C. E.] US DOE, Germantown, MD 20874 USA.
   [Brown, J. L.; Huling, J. C.; Van Pelt, C. E.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Kramer, DP (reprint author), Univ Dayton, Dayton, OH 45469 USA.
EM daniel.kramer@udri.udayton.edu
NR 2
TC 0
Z9 0
U1 0
U2 2
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA SARA BURGERHARTSTRAAT 25, PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1875-3892
J9 PHYSCS PROC
PY 2011
VL 20
DI 10.1016/j.phpro.2011.08.035
PG 7
WC Engineering, Aerospace; Astronomy & Astrophysics
SC Engineering; Astronomy & Astrophysics
GA BYP01
UT WOS:000299526500034
ER

PT J
AU Dyar, MD
   Tucker, JM
   Humphries, S
   Clegg, SM
   Wiens, RC
   Lane, MD
AF Dyar, M. Darby
   Tucker, Jonathan M.
   Humphries, Seth
   Clegg, Samuel M.
   Wiens, Roger C.
   Lane, Melissa D.
TI Strategies for Mars remote Laser-Induced Breakdown Spectroscopy analysis
   of sulfur in geological samples
SO SPECTROCHIMICA ACTA PART B-ATOMIC SPECTROSCOPY
LA English
DT Article
DE LIBS; Sulfate; Sulfide; Sulfur; ChemCam
ID X-RAY SPECTROMETER; MERIDIANI-PLANUM; CHASSIGNY METEORITE; MARTIAN
   METEORITES; OMEGA/MARS EXPRESS; VACUUM-ULTRAVIOLET; SNC METEORITES;
   CHEMICAL-COMPOSITION; NAKHLA METEORITE; SULFATE MINERALS
AB The key to understanding the sulfur history on Mars is to identify and determine sulfate and sulfide compositions and then to draw from them geologic clues about their environments of formation. To lay a foundation for use of remote LIBS to sulfur analysis in planetary exploration, we have undertaken a focused study of sulfur LIBS in geological samples in a simulated Mars atmosphere, with experimental parameters replicating the ChemCam LIBS instrument. A suite of twelve samples was selected, including rocks rich in minerals representative of sulfates and sulfides that might be encountered on Mars. Univariate analysis of sulfur emission lines did not provide quantitative information. Partial least squares (PLS) analysis was successful at modeling sulfur concentrations for a subset of samples with similar matrices. Sulfide minerals were identified on the basis of other siderophile or chalcophile peaks, such as those arising from Zn and Cu. Because the S lines are very weak compared to those of other elements, optimal PIS results were obtained by restricting the wavelength range to channels close to the most intense sulfur lines similar to 540-570 nm. Principal components analysis was attempted on the dataset, but did not differentiate the samples into meaningful groups because the sulfur lines are not strong enough. However, areas of the relatively weak S, H, and 0 peaks may be used to correctly classify all samples. Based on these outcomes, a flowchart that outlines a possible decision tree for identification and quantification of sulfur in remote LIBS analysis was constructed. Results suggest that LIBS data acquired under Mars conditions can meet the science requirements for the ChemCam instrument. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Dyar, M. Darby; Tucker, Jonathan M.] Mt Holyoke Coll, Dept Astron, S Hadley, MA 01075 USA.
   [Humphries, Seth; Clegg, Samuel M.; Wiens, Roger C.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Lane, Melissa D.] Planetary Sci Inst, Tucson, AZ 85719 USA.
RP Dyar, MD (reprint author), Mt Holyoke Coll, Dept Astron, 50 Coll St, S Hadley, MA 01075 USA.
EM mdyar@mtholyoke.edu; jtucker@mtholyoke.edu; sethdh@lanl.gov;
   sclegg@lanl.gov; rwiens@lanl.gov; lane@psi.edu
OI Clegg, Sam/0000-0002-0338-0948
FU NASA [NNG06GH35G, NNX09AL21G, NNX06AB62G]
FX We are grateful for support from NASA grants NNG06GH35G, NNX09AL21G, and
   NNX06AB62G.
NR 149
TC 61
Z9 68
U1 6
U2 44
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0584-8547
J9 SPECTROCHIM ACTA B
JI Spectroc. Acta Pt. B-Atom. Spectr.
PD JAN
PY 2011
VL 66
IS 1
BP 39
EP 56
DI 10.1016/j.sab.2010.11.016
PG 18
WC Spectroscopy
SC Spectroscopy
GA 732MM
UT WOS:000288189400005
ER

PT J
AU Pan, YX
   Liu, GK
AF Pan, Y. X.
   Liu, G. K.
TI Enhancement of Eu2+ Luminescence in BaO-SiO2 Compounds Through
   Composition Modification
SO SPECTROSCOPY LETTERS
LA English
DT Article
DE luminescence enhancement; phosphors; silicates; white LEDs
ID HOST LATTICE; WHITE LEDS; PHOSPHOR; EMISSION; IONS; EFFICIENCY;
   PHOTOLUMINESCENCE; CONVERSION; GREEN; B3+
AB Phosphors of Eu2+-doped BaO-SiO2 compounds composed of a major BaSiO3 phase and a minor Ba2SiO4 phase were synthesized by a solid-state method at 1200 degrees C under CO atmosphere. An enhancement of the photoluminescence of Eu2+ up to 18 times has been achieved by mixing ZnO into the composition. The composition-optimized phosphor emits bright yellow-green luminescence with excitation between 380 and 420 nm, indicating potential of application in AlGaN-based UV-LEDs. Under the similar synthesis and measurement conditions, the emission band of the optimized phosphor is more intense and has stronger red component than that of Ba2SiO4:Eu2+. Our experimental results suggest that the addition of ZnO may retain and stabilize Eu2+ in BaSiO3 crystalline lattice and thus may enhance the 5d-4f luminescence and eliminate Eu3+ 4f-4f transition.
C1 [Pan, Y. X.; Liu, G. K.] Argonne Natl Lab, Chem Sci & Engn Div, Argonne, IL 60439 USA.
RP Liu, GK (reprint author), Argonne Natl Lab, Chem Sci & Engn Div, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM gkliu@anl.gov
FU U.S. Department of Energy, Office of Basic Energy Sciences, Division of
   Chemical Sciences, Geosciences, and Biosciences [DE-AC02-06CH11357]
FX Work performed at Argonne National Laboratory was supported by the U.S.
   Department of Energy, Office of Basic Energy Sciences, Division of
   Chemical Sciences, Geosciences, and Biosciences, under contract
   DE-AC02-06CH11357.
NR 25
TC 7
Z9 7
U1 2
U2 12
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0038-7010
J9 SPECTROSC LETT
JI Spectr. Lett.
PY 2011
VL 44
IS 1
BP 1
EP 7
DI 10.1080/00387010.2010.547388
PG 7
WC Spectroscopy
SC Spectroscopy
GA 729CL
UT WOS:000287925600001
ER

PT S
AU Chen, WNW
   Song, B
AF Chen, Weinong W.
   Song, Bo
TI Split Hopkinson (Kolsky) Bar: Design, Testing and Applications
SO SPLIT HOPKINSON (KOLSKY) BAR: DESIGN, TESTING AND APPLICATIONS
SE Mechanical Engineering Series
LA English
DT Article; Book
ID HIGH-STRAIN-RATE; EPOXY SYNTACTIC FOAM; DYNAMIC COMPRESSIVE RESPONSE;
   PULSE-SHAPING TECHNIQUES; PRESSURE BAR; FRACTURE-TOUGHNESS; SOFT
   MATERIALS; ELEVATED-TEMPERATURES; EPDM RUBBER; MECHANICAL RESPONSE
C1 [Chen, Weinong W.] Purdue Univ, Sch Aeronaut & Astronaut, Sch Mat Engn, W Lafayette, IN 47907 USA.
   [Song, Bo] Sandia Natl Labs, Dept Mech Mat, Livermore, CA 94551 USA.
RP Chen, WNW (reprint author), Purdue Univ, Sch Aeronaut & Astronaut, Sch Mat Engn, 701 W Stadium Ave, W Lafayette, IN 47907 USA.
EM wchen@purdue.edu; bsong@sandia.gov
NR 193
TC 122
Z9 122
U1 0
U2 10
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
SN 0941-5122
BN 978-1-4419-7981-0
J9 MECH ENG SER
PY 2011
BP 1
EP +
DI 10.1007/978-1-4419-7982-7
PG 354
WC Engineering, Mechanical
SC Engineering
GA BSO41
UT WOS:000285117100001
ER

PT B
AU Morgan, K
   Stegner, G
AF Morgan, Kenneth
   Stegner, Gary
BE Burger, J
TI How Clean Is Clean? Stakeholders and Consensus-Building at the Fernald
   Uranium Plant
SO STAKEHOLDERS AND SCIENTISTS: ACHIEVING IMPLEMENTABLE SOLUTIONS TO ENERGY
   AND ENVIRONMENTAL ISSUES
LA English
DT Article; Book Chapter
AB This is an account of the Fernald Uranium plant, the pollution from the plant, and its impact on the community. The Fernald Feed Materials Plant provided uranium metal to the United States nuclear weapons program from 1951 to 1989. In 1984, public awareness and concern over environmental releases began to grow, culminating in a lawsuit against the operators of the plant. Public reaction to the site was so negative that it became difficult, if not impossible, to operate or remediate the site. Systematic application of a program of public participation restored institutional credibility. Stakeholder input dramatically improved the quality of decision making, resulting in reduced costs and an accelerated environmental restoration.
C1 [Morgan, Kenneth; Stegner, Gary] US DOE, Ohio Field Off, Miamisburg, OH 45342 USA.
RP Morgan, K (reprint author), US DOE, Ohio Field Off, Miamisburg, OH 45342 USA.
EM morgan.ken@mac.com; Gary.Stegner@lm.doe.gov
NR 6
TC 1
Z9 1
U1 1
U2 3
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4419-8812-6
PY 2011
BP 63
EP 87
DI 10.1007/978-1-4419-8813-3_4
D2 10.1007/978-1-4419-8813-3
PG 25
WC Environmental Sciences
SC Environmental Sciences & Ecology
GA BYL56
UT WOS:000299249000004
ER

PT J
AU Anderson, I
   Wirth, R
   Lucas, S
   Copeland, A
   Lapidus, A
   Cheng, JF
   Goodwin, L
   Pitluck, S
   Davenport, K
   Detter, JC
   Han, C
   Tapia, R
   Land, M
   Hauser, L
   Pati, A
   Mikhailova, N
   Woyke, T
   Klenk, HP
   Kyrpides, N
   Ivanova, N
AF Anderson, Iain
   Wirth, Reinhard
   Lucas, Susan
   Copeland, Alex
   Lapidus, Alla
   Cheng, Jan-Fang
   Goodwin, Lynne
   Pitluck, Samuel
   Davenport, Karen
   Detter, John C.
   Han, Cliff
   Tapia, Roxanne
   Land, Miriam
   Hauser, Loren
   Pati, Amrita
   Mikhailova, Natalia
   Woyke, Tanja
   Klenk, Hans-Peter
   Kyrpides, Nikos
   Ivanova, Natalia
TI Complete genome sequence of Staphylothermus hellenicus P8(T)
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE Archaea; Crenarchaeota; Desulfurococcaceae; hyperthermophile;
   hydrothermal vent; anaerobe
ID PYROCOCCUS-FURIOSUS; SP-NOV; SULFUR; METABOLISM; ARCHAEA; SYSTEM;
   GRAPHS; GENUS; TOOL
AB Staphylothermus hellenicus belongs to the order Desulfurococcales within the archaeal phylum Crenarchaeota. Strain P8(T) is the type strain of the species and was isolated from a shallow hydrothermal vent system at Palaeochori Bay, Milos, Greece. It is a hyperthermophilic, anaerobic heterotroph. Here we describe the features of this organism together with the complete genome sequence and annotation. The 1,580,347 bp genome with its 1,668 protein-coding and 48 RNA genes was sequenced as part of a DOE Joint Genome Institute (JGI) Laboratory Sequencing Program (LSP) project.
C1 [Anderson, Iain; Lucas, Susan; Copeland, Alex; Lapidus, Alla; Cheng, Jan-Fang; Goodwin, Lynne; Pitluck, Samuel; Davenport, Karen; Detter, John C.; Han, Cliff; Tapia, Roxanne; Pati, Amrita; Mikhailova, Natalia; Woyke, Tanja; Kyrpides, Nikos; Ivanova, Natalia] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Wirth, Reinhard] Univ Regensburg, Microbiol Archaeenzentrum, Regensburg, Germany.
   [Goodwin, Lynne; Davenport, Karen; Detter, John C.; Han, Cliff; Tapia, Roxanne] Los Alamos Natl Lab, Los Alamos, NM USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN USA.
   [Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RP Anderson, I (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
EM IJAnderson@lbl.gov
RI Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Land,
   Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014; 
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462; Ivanova,
   Natalia/0000-0002-5802-9485
NR 36
TC 5
Z9 5
U1 1
U2 2
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 12
EP 20
DI 10.4056/sigs.2054696
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200002
PM 22180806
ER

PT J
AU Woyke, T
   Chertkov, O
   Lapidus, A
   Nolan, M
   Lucas, S
   Del Rio, TG
   Tice, H
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Huntemann, M
   Mavromatis, K
   Mikhailova, N
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Rohde, M
   Mwirichia, R
   Sikorski, J
   Tindall, BJ
   Goker, M
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Klenk, HP
   Kyrpides, NC
AF Woyke, Tanja
   Chertkov, Olga
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Del Rio, Tijana Glavina
   Tice, Hope
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Huntemann, Marcel
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Mwirichia, Romano
   Sikorski, Johannes
   Tindall, Brian J.
   Goeker, Markus
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Klenk, Hans-Peter
   Kyrpides, Nikos C.
TI Complete genome sequence of the gliding freshwater bacterium Fluviicola
   taffensis type strain (RW262(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly aerobic; motile by gliding; Gram-negative;
   flexirubin-synthesizing; mesophilic; chemoorganotrophic; Cryomorphaceae;
   GEBA
ID GEN. NOV.; MARINE BACTERIUM; FAMILY CRYOMORPHACEAE; ARCHAEA;
   FLAVOBACTERIA; ALGORITHM; DATABASE; SYSTEM; GRAPHS; TOOL
AB Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of the tree of life. Strain RW262(T) forms a monophyletic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the family Cryomorphaceae are from marine habitats and have an absolute requirement for Na+ ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Woyke, Tanja; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Land, Miriam; Hauser, Loren; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Tapia, Roxanne; Han, Cliff; Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Markowitz, Victor] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Brambilla, Evelyne-Marie; Sikorski, Johannes; Tindall, Brian J.; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Kyrpides, NC (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science; University of California,
   Lawrence Berkeley National Laboratory [DE-AC02-05CH11231]; Lawrence
   Livermore National Laboratory [DE-AC52-07NA27344]; Los Alamos National
   Laboratory [DE-AC02-06NA25396]; UT-Battelle and Oak Ridge National
   Laboratory [DE-AC05-00OR22725]; German Research Foundation (DFG) [INST
   599/1-2]
FX We would like to gratefully acknowledge the help of Helga Pomrenke
   (DSMZ) for growing F. taffensis cultures. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 38
TC 8
Z9 9
U1 2
U2 9
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 21
EP 29
DI 10.4056/sigs.2124912
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200003
PM 22180807
ER

PT J
AU Liolios, K
   Sikorski, J
   Lu, MG
   Nolan, M
   Lapidus, A
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Huntemann, M
   Ivanova, N
   Pagani, I
   Mavromatis, K
   Ovchinikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Kotsyurbenko, O
   Rohde, M
   Tindall, BJ
   Abt, B
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Klenk, HP
   Kyrpides, NC
AF Liolios, Konstantinos
   Sikorski, Johannes
   Lu, Meagan
   Nolan, Matt
   Lapidus, Alla
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Huntemann, Marcel
   Ivanova, Natalia
   Pagani, Ioanna
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Kotsyurbenko, Oleg
   Rohde, Manfred
   Tindall, Brian J.
   Abt, Birte
   Goeker, Markus
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Klenk, Hans-Peter
   Kyrpides, Nikos C.
TI Complete genome sequence of the gliding, heparinolytic Pedobacter
   saltans type strain (113(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly aerobic; gliding motility; Gram-negative; heparinolytic;
   mesophilic; chemoorganotrophic; Sphingobacteriaceae; GEBA
ID SP-NOV.; FAMILY SPHINGOBACTERIACEAE; EMENDED DESCRIPTION; GENUS
   PEDOBACTER; SP. NOV.; BACTERIA; PROPOSAL; ARCHAEA; SOIL; CLASSIFICATION
AB Pedobacter saltans Steyn et al. 1998 is one of currently 32 species in the genus Pedobacter within the family Sphingobacteriaceae. The species is of interest for its isolated location in the tree of life. Like other members of the genus P. saltans is heparinolytic. Cells of P. saltans show a peculiar gliding, dancing motility and can be distinguished from other Pedobacter strains by their ability to utilize glycerol and the inability to assimilate D-cellobiose. The genome presented here is only the second completed genome sequence of a type strain from a member of the family Sphingobacteriaceae to be published. The 4,635,236 bp long genome with its 3,854 protein-coding and 67 RNA genes consists of one chromosome, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Liolios, Konstantinos; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Ivanova, Natalia; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Sikorski, Johannes; Brambilla, Evelyne-Marie; Tindall, Brian J.; Abt, Birte; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Lu, Meagan; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Kotsyurbenko, Oleg] Tech Univ Carolo Wilhelmina Braunschweig, Inst Microbiol, D-38106 Braunschweig, Germany.
   [Kotsyurbenko, Oleg] Lomonosov Moscow State Univ, Dept Biol, Moscow, Russia.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Kyrpides, NC (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014; Pagani,
   Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013
OI Land, Miriam/0000-0001-7102-0031; Kyrpides, Nikos/0000-0002-6131-0462;
   Lapidus, Alla/0000-0003-0427-8731
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Helga Pomrenke
   (DSMZ) for growing P. saltans cultures. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 52
TC 7
Z9 7
U1 1
U2 4
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 30
EP 40
DI 10.4056/sigs.2154937
PG 11
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200004
PM 22180808
ER

PT J
AU Pati, A
   Gronow, S
   Lu, MG
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Mavromatis, K
   Mikhailova, N
   Huntemann, M
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Detter, JC
   Brambilla, EM
   Rohde, M
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Ivanova, N
AF Pati, Amrita
   Gronow, Sabine
   Lu, Megan
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Huntemann, Marcel
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Detter, John C.
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Ivanova, Natalia
TI Non-contiguous finished genome sequence of the opportunistic oral
   pathogen Prevotella multisaccharivorax type strain (PPPA20(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE obligately anaerobic; non-motile; Gram-negative; mesophilic;
   chemoorganotrophic; opportunistic pathogen; Prevotellaceae; GEBA
ID BACTERIA; ARCHAEA; DATABASE; SYSTEM; GRAPHS; GENUS; TOOL
AB Prevotella multisaccharivorax Sakamoto et al. 2005 is a species of the large genus Prevotella, which belongs to the family Prevotellaceae. The species is of medical interest because its members are able to cause diseases in the human oral cavity such as periodontitis, root caries and others. Although 77 Prevotella genomes have already been sequenced or are targeted for sequencing, this is only the second completed genome sequence of a type strain of a species within the genus Prevotella to be published. The 3,388,644 bp long genome is assembled in three non-contiguous contigs, harbors 2,876 protein-coding and 75 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Gronow, Sabine; Brambilla, Evelyne-Marie; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Pati, Amrita; Lu, Megan; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Mavromatis, Konstantinos; Mikhailova, Natalia; Huntemann, Marcel; Land, Miriam; Hauser, Loren; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Ivanova, Natalia] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Lu, Megan; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Sabine Welnitz
   (DSMZ) for growing P. multisaccharivorax cultures. This work was
   performed under the auspices of the US Department of Energy Office of
   Science, Biological and Environmental Research Program, and by the
   University of California, Lawrence Berkeley National Laboratory under
   contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory
   under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory
   under contract No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National
   Laboratory under contract DE-AC05-00OR22725, as well as German Research
   Foundation (DFG) INST 599/1-2.
NR 35
TC 1
Z9 1
U1 2
U2 4
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 41
EP 49
DI 10.4056/sigs.2164949
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200005
PM 22180809
ER

PT J
AU Anderson, I
   Risso, C
   Holmes, D
   Lucas, S
   Copeland, A
   Lapidus, A
   Cheng, JF
   Bruce, D
   Goodwin, L
   Pitluck, S
   Saunders, E
   Brettin, T
   Detter, JC
   Han, C
   Tapia, R
   Larimer, F
   Land, M
   Hauser, L
   Woyke, T
   Lovley, D
   Kyrpides, N
   Ivanova, N
AF Anderson, Iain
   Risso, Carla
   Holmes, Dawn
   Lucas, Susan
   Copeland, Alex
   Lapidus, Alla
   Cheng, Jan-Fang
   Bruce, David
   Goodwin, Lynne
   Pitluck, Samuel
   Saunders, Elizabeth
   Brettin, Thomas
   Detter, John C.
   Han, Cliff
   Tapia, Roxanne
   Larimer, Frank
   Land, Miriam
   Hauser, Loren
   Woyke, Tanja
   Lovley, Derek
   Kyrpides, Nikos
   Ivanova, Natalia
TI Complete genome sequence of Ferroglobus placidus AEDII12DO
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE Archaea; Euryarchaeota; Archaeoglobales; hydrothermal vent;
   hyperthermophile; anaerobe
ID FE(III) REDUCTION; METABOLISM; OXIDATION; SYSTEM; PREDICTION; ACONITASE;
   PATHWAY; ARCHAEA; TOOL
AB Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryarchaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at Vulcano, Italy. It is a hyperthermophilic, anaerobic chemolithoautotroph, but it can also use a variety of aromatic compounds as electron donors. Here we describe the features of this organism together with the complete genome sequence and annotation. The 2,196,266 bp genome with its 2,567 protein-coding and 55 RNA genes was sequenced as part of a DOE Joint Genome Institute Laboratory Sequencing Program (LSP) project.
C1 [Anderson, Iain; Lucas, Susan; Copeland, Alex; Lapidus, Alla; Cheng, Jan-Fang; Bruce, David; Goodwin, Lynne; Pitluck, Samuel; Saunders, Elizabeth; Brettin, Thomas; Detter, John C.; Han, Cliff; Tapia, Roxanne; Woyke, Tanja; Kyrpides, Nikos; Ivanova, Natalia] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Risso, Carla; Holmes, Dawn; Lovley, Derek] Univ Massachusetts, Dept Microbiol, Amherst, MA 01003 USA.
   [Bruce, David; Goodwin, Lynne; Saunders, Elizabeth; Brettin, Thomas; Detter, John C.; Han, Cliff; Tapia, Roxanne] Los Alamos Natl Lab, Los Alamos, NM USA.
   [Larimer, Frank; Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN USA.
RP Anderson, I (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
EM IJAnderson@lbl.gov
RI Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Land,
   Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Ivanova, Natalia/0000-0002-5802-9485; Lapidus, Alla/0000-0003-0427-8731;
   Land, Miriam/0000-0001-7102-0031; Kyrpides, Nikos/0000-0002-6131-0462
FU Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]
FX The work conducted by the US Department of Energy Joint Genome Institute
   is supported by the Office of Science of the U.S. Department of Energy
   under Contract No. DE-AC02-05CH11231.
NR 42
TC 9
Z9 9
U1 2
U2 6
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 50
EP 60
DI 10.4056/sigs.2225018
PG 11
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200006
PM 22180810
ER

PT J
AU DeAngelis, KM
   D'Haeseleer, P
   Chivian, D
   Fortney, JL
   Khudyakov, J
   Simmons, B
   Woo, H
   Arkin, AP
   Davenport, KW
   Goodwin, L
   Chen, A
   Ivanova, N
   Kyrpides, NC
   Mavromatis, K
   Woyke, T
   Hazen, TC
AF DeAngelis, Kristen M.
   D'Haeseleer, Patrik
   Chivian, Dylan
   Fortney, Julian L.
   Khudyakov, Jane
   Simmons, Blake
   Woo, Hannah
   Arkin, Adam P.
   Davenport, Karen Walston
   Goodwin, Lynne
   Chen, Amy
   Ivanova, Natalia
   Kyrpides, Nikos C.
   Mavromatis, Konstantinos
   Woyke, Tanja
   Hazen, Terry C.
TI Complete genome sequence of "Enterobacter lignolyticus" SCF1
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE Anaerobic lignin degradation; tropical forest soil isolate; facultative
   anaerobe
ID AROMATIC-COMPOUNDS; RNA GENES; ANNOTATION; DECOMPOSITION; ACCURACY;
   BACTERIA; LIGNIN; SYSTEM; SOIL; TOOL
AB In an effort to discover anaerobic bacteria capable of lignin degradation, we isolated "Enterobacter lignolyticus" SCF1 on minimal media with alkali lignin as the sole source of carbon. This organism was isolated anaerobically from tropical forest soils collected from the Short Cloud Forest site in the El Yunque National Forest in Puerto Rico, USA, part of the Luquillo Long-Term Ecological Research Station. At this site, the soils experience strong fluctuations in redox potential and are net methane producers. Because of its ability to grow on lignin anaerobically, we sequenced the genome. The genome of "E. lignolyticus" SCF1 is 4.81 Mbp with no detected plasmids, and includes a relatively small arsenal of lignocellulolytic carbohydrate active enzymes. Lignin degradation was observed in culture, and the genome revealed two putative laccases, a putative peroxidase, and a complete 4-hydroxyphenylacetate degradation pathway encoded in a single gene cluster.
C1 [DeAngelis, Kristen M.; D'Haeseleer, Patrik; Fortney, Julian L.; Woo, Hannah; Hazen, Terry C.] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Dept Ecol, Berkeley, CA 94720 USA.
   [DeAngelis, Kristen M.; Khudyakov, Jane; Simmons, Blake; Woo, Hannah; Hazen, Terry C.] Joint BioEnergy Inst, Deconstruct Div, Microbial Communities Grp, Emeryville, CA USA.
   [D'Haeseleer, Patrik; Khudyakov, Jane] Lawrence Livermore Natl Lab, Livermore, CA USA.
   [Chivian, Dylan; Arkin, Adam P.] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA.
   [Chivian, Dylan; Arkin, Adam P.] Joint BioEnergy Inst, Technol Div, Emeryville, CA USA.
   [Simmons, Blake] Sandia Natl Labs, Livermore, CA USA.
   [Davenport, Karen Walston; Goodwin, Lynne] Los Alamos Natl Lab, Los Alamos, NM USA.
   [Chen, Amy; Ivanova, Natalia; Kyrpides, Nikos C.; Mavromatis, Konstantinos; Woyke, Tanja] US DOE, Joint Genome Inst, Walnut Creek, CA USA.
RP DeAngelis, KM (reprint author), Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Dept Ecol, Berkeley, CA 94720 USA.
EM kristen@post.harvard.edu
RI Khudyakov, Jane/C-1213-2014; Arkin, Adam/A-6751-2008; Hazen,
   Terry/C-1076-2012; Kyrpides, Nikos/A-6305-2014; 
OI Khudyakov, Jane/0000-0001-7038-102X; Woo, Hannah/0000-0002-9342-6072;
   Ivanova, Natalia/0000-0002-5802-9485; DeAngelis,
   Kristen/0000-0002-5585-4551; Arkin, Adam/0000-0002-4999-2931; Hazen,
   Terry/0000-0002-2536-9993; Kyrpides, Nikos/0000-0002-6131-0462;
   D'haeseleer, Patrik/0000-0003-0007-8150; Simmons,
   Blake/0000-0002-1332-1810
FU U.S. Department of Energy, Office of Science, Office of Biological and
   Environmental Research [DE-AC02-05CH11231]
FX The work conducted in part by the U.S. Department of Energy Joint Genome
   Institute and in part by the Joint BioEnergy Institute
   (http://www.jbei.org) supported by the U.S. Department of Energy, Office
   of Science, Office of Biological and Environmental Research, under
   Contract No. DE-AC02-05CH11231.
NR 49
TC 23
Z9 24
U1 2
U2 19
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 69
EP 85
DI 10.4056/sigs.2104875
PG 17
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200008
PM 22180812
ER

PT J
AU Lapidus, A
   Chertkov, O
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Huntemann, M
   Mavromatis, K
   Mikhailova, N
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Rohde, M
   Abt, B
   Spring, S
   Goker, M
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Woyke, T
AF Lapidus, Alla
   Chertkov, Olga
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Huntemann, Marcel
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Abt, Birte
   Spring, Stefan
   Goeker, Markus
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Woyke, Tanja
TI Genome sequence of the moderately thermophilic halophile Flexistipes
   sinusarabici strain (MAS10(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly anaerobic; Gram-negative; non-motile; heterotrophic; moderately
   thermophilic; marine; brine; Deferribacteraceae; GEBA
ID BACTERIA; ARCHAEA; DATABASE; SYSTEM; GRAPHS; TOOL; SEA
AB Flexistipes sinusarabici Fiala et al. 2000 is the type species of the genus Flexistipes in the family Deferribacteraceae. The species is of interest because of its isolated phylogenetic location in a genomically under-characterized region of the tree of life, and because of its origin from a multiply extreme environment; the Atlantis Deep brines of the Red Sea, where it had to struggle with high temperatures, high salinity, and a high concentrations of heavy metals. This is the fourth completed genome sequence to be published of a type strain of the family Deferribacteraceae. The 2,526,590 bp long genome with its 2,346 protein-coding and 53 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Brambilla, Evelyne-Marie; Abt, Birte; Spring, Stefan; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Lapidus, Alla; Chertkov, Olga; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Land, Miriam; Hauser, Loren; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Woyke, Tanja] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Chertkov, Olga; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Markowitz, Victor] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Lapidus, Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides,
   Nikos/A-6305-2014; Spring, Stefan/N-6933-2013; Pagani,
   Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462; Spring, Stefan/0000-0001-6247-0938;
   
FU US Department of Energy's Office of Science, Biological and
   Environmental Research; University of California, Lawrence Berkeley
   National Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National
   Laboratory [DE-AC52-07NA27344]; Los Alamos National Laboratory
   [DE-AC02-06NA25396]; UT-Battelle and Oak Ridge National Laboratory
   [DE-AC05-00OR22725]; German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Maren Schroder
   (DSMZ) for growing F. sinusarabici cultures. This work was performed
   under the auspices of the US Department of Energy's Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 38
TC 4
Z9 5
U1 2
U2 9
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 86
EP 96
DI 10.4056/sigs.2235024
PG 11
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200009
PM 22180813
ER

PT J
AU Chang, YJ
   Land, M
   Hauser, L
   Chertkov, O
   Del Rio, TG
   Nolan, M
   Copeland, A
   Tice, H
   Cheng, JF
   Lucas, S
   Han, C
   Goodwin, L
   Pitluck, S
   Ivanova, N
   Ovchinikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Mavromatis, K
   Liolios, K
   Brettin, T
   Fiebig, A
   Rohde, M
   Abt, B
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Lapidus, A
AF Chang, Yun-juan
   Land, Miriam
   Hauser, Loren
   Chertkov, Olga
   Del Rio, Tijana Glavina
   Nolan, Matt
   Copeland, Alex
   Tice, Hope
   Cheng, Jan-Fang
   Lucas, Susan
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Ivanova, Natalia
   Ovchinikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Mavromatis, Konstantinos
   Liolios, Konstantinos
   Brettin, Thomas
   Fiebig, Anne
   Rohde, Manfred
   Abt, Birte
   Goeker, Markus
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Lapidus, Alla
TI Non-contiguous finished genome sequence and contextual data of the
   filamentous soil bacterium Ktedonobacter racemifer type strain
   (SOSP1-21(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE aerobic; heterotrophic; filamentous; non-motile; Gram-positive;
   moderately acidophilic; sporulating; transposon; broken-stick
   distribution; entropy; Ktedonobacteraceae; Chloroflexi; GEBA
ID GROUP-II INTRONS; SPHAEROBACTER-THERMOPHILUS; EMENDED DESCRIPTION;
   ARCHAEA; ALGORITHM; SYSTEM; ROSEUM; TOOL; NOV
AB Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassified lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Fiebig, Anne; Abt, Birte; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Chang, Yun-juan; Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Chang, Yun-juan; Land, Miriam; Hauser, Loren; Chertkov, Olga; Del Rio, Tijana Glavina; Nolan, Matt; Copeland, Alex; Tice, Hope; Cheng, Jan-Fang; Lucas, Susan; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Ivanova, Natalia; Ovchinikova, Galina; Pati, Amrita; Mavromatis, Konstantinos; Liolios, Konstantinos; Brettin, Thomas; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Lapidus, Alla] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Chertkov, Olga; Han, Cliff; Goodwin, Lynne; Brettin, Thomas; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Land,
   Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy's Office of Science, Biological and
   Environmental Research; University of California, Lawrence Berkeley
   National Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National
   Laboratory [DE-AC52-07NA27344]; Los Alamos National Laboratory
   [DE-AC02-06NA25396]; UT-Battelle and Oak Ridge National Laboratory
   [DE-AC05-00OR22725]; German Research Foundation (DFG) [INST 599/1-1]
FX We would like to gratefully acknowledge the help of Marlen Jando for
   growing K. racemifer cultures and Susanne Schneider for DNA extraction
   and quality control (both at DSMZ). This work was performed under the
   auspices of the US Department of Energy's Office of Science, Biological
   and Environmental Research Program, and by the University of California,
   Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-1.
NR 48
TC 28
Z9 28
U1 1
U2 15
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 97
EP 111
DI 10.4056/sigs.2114901
PG 15
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200010
PM 22180814
ER

PT J
AU Chertkov, O
   Copeland, A
   Lucas, S
   Lapidus, A
   Berry, KW
   Detter, JC
   Del Rio, TG
   Hammon, N
   Dalin, E
   Tice, H
   Pitluck, S
   Richardson, P
   Bruce, D
   Goodwin, L
   Han, C
   Tapia, R
   Saunders, E
   Schmutz, J
   Brettin, T
   Larimer, F
   Land, M
   Hauser, L
   Spring, S
   Rohde, M
   Kyrpides, NC
   Ivanova, N
   Goker, M
   Beller, HR
   Klenk, HP
   Woyke, T
AF Chertkov, Olga
   Copeland, Alex
   Lucas, Susan
   Lapidus, Alla
   Berry, Kerrie W.
   Detter, John C.
   Del Rio, Tijana Glavina
   Hammon, Nancy
   Dalin, Eileen
   Tice, Hope
   Pitluck, Sam
   Richardson, Paul
   Bruce, David
   Goodwin, Lynne
   Han, Cliff
   Tapia, Roxanne
   Saunders, Elizabeth
   Schmutz, Jeremy
   Brettin, Thomas
   Larimer, Frank
   Land, Miriam
   Hauser, Loren
   Spring, Stefan
   Rohde, Manfred
   Kyrpides, Nikos C.
   Ivanova, Natalia
   Goeker, Markus
   Beller, Harry R.
   Klenk, Hans-Peter
   Woyke, Tanja
TI Complete genome sequence of Tolumonas auensis type strain (TA 4(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE facultatively anaerobic; chemoorganotrophic; Gram-negative; non-motile;
   toluene producer; Aeromonadaceae; Gammaproteobacteria; JBEI 2008
ID RNA GENES; DATABASE; PREDICTION; ALGORITHM; PROPOSAL; TOOL; NOV
AB Tolumonas auensis Fischer-Romero et al. 1996 is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Other than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4(T) is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292 bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008.
C1 [Beller, Harry R.] Joint BioEnergy Inst JBEI, Emeryville, CA USA.
   [Chertkov, Olga; Copeland, Alex; Lucas, Susan; Lapidus, Alla; Berry, Kerrie W.; Detter, John C.; Del Rio, Tijana Glavina; Hammon, Nancy; Dalin, Eileen; Tice, Hope; Pitluck, Sam; Richardson, Paul; Bruce, David; Goodwin, Lynne; Han, Cliff; Tapia, Roxanne; Saunders, Elizabeth; Brettin, Thomas; Larimer, Frank; Land, Miriam; Hauser, Loren; Kyrpides, Nikos C.; Ivanova, Natalia; Woyke, Tanja] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Chertkov, Olga; Detter, John C.; Bruce, David; Goodwin, Lynne; Han, Cliff; Tapia, Roxanne; Saunders, Elizabeth; Schmutz, Jeremy] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Brettin, Thomas; Larimer, Frank; Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Spring, Stefan; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Beller, Harry R.] Lawrence Berkeley Natl Lab, Emeryville, CA USA.
RP Beller, HR (reprint author), Joint BioEnergy Inst JBEI, Emeryville, CA USA.
RI Spring, Stefan/N-6933-2013; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Schmutz, Jeremy/N-3173-2013; Beller,
   Harry/H-6973-2014; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Spring, Stefan/0000-0001-6247-0938; Lapidus, Alla/0000-0003-0427-8731;
   Schmutz, Jeremy/0000-0001-8062-9172; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231];
   Office of Science, Office of Biological and Environmental Research, of
   the U.S. Department of Energy [DE-AC02-05CH11231]
FX The work conducted by the U.S. Department of Energy Joint Genome
   Institute was supported by the Office of Science of the U.S. Department
   of Energy under Contract No. DE-AC02-05CH11231, and work conducted by
   the Joint BioEnergy Institute (H. R. B.) was supported by the Office of
   Science, Office of Biological and Environmental Research, of the U.S.
   Department of Energy under Contract No. DE-AC02-05CH11231.
NR 32
TC 1
Z9 1
U1 0
U2 4
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 112
EP 120
DI 10.4056/sigs.2184986
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200011
PM 22180815
ER

PT J
AU Klenk, HP
   Lapidus, A
   Chertkov, O
   Copeland, A
   Del Rio, TG
   Nolan, M
   Lucas, S
   Chen, F
   Tice, H
   Cheng, JF
   Han, C
   Bruce, D
   Goodwin, L
   Pitluck, S
   Pati, A
   Ivanova, N
   Mavromatis, K
   Daum, C
   Chen, A
   Palaniappan, K
   Chang, YJ
   Land, M
   Hauser, L
   Jeffries, CD
   Detter, JC
   Rohde, M
   Abt, B
   Pukall, R
   Goker, M
   Bristow, J
   Markowitz, V
   Hugenholtz, P
   Eisen, JA
AF Klenk, Hans-Peter
   Lapidus, Alla
   Chertkov, Olga
   Copeland, Alex
   Del Rio, Tijana Glavina
   Nolan, Matt
   Lucas, Susan
   Chen, Feng
   Tice, Hope
   Cheng, Jan-Fang
   Han, Cliff
   Bruce, David
   Goodwin, Lynne
   Pitluck, Sam
   Pati, Amrita
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Daum, Chris
   Chen, Amy
   Palaniappan, Krishna
   Chang, Yun-juan
   Land, Miriam
   Hauser, Loren
   Jeffries, Cynthia D.
   Detter, John C.
   Rohde, Manfred
   Abt, Birte
   Pukall, Ruediger
   Goeker, Markus
   Bristow, James
   Markowitz, Victor
   Hugenholtz, Philip
   Eisen, Jonathan A.
TI Complete genome sequence of the thermophilic, hydrogen-oxidizing
   Bacillus tusciae type strain (T2(T)) and reclassification in the new
   genus, Kyrpidia gen. nov as Kyrpidia tusciae comb. nov and emendation of
   the family Alicyclobacillaceae da Costa and Rainey, 2010
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE hydrogen-oxidizing; aerobe; facultative chemolithoautotroph;
   thermoacidophile; free-living; solfatara; spore-forming; Bacillaceae;
   GEBA
ID BACTERIA; ACIDOCALDARIUS; ARCHAEA; TOOL; IDENTIFICATION; DATABASE;
   PROPOSAL; SYSTEM; RDNA
AB Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S sequence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2(T) as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analysis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2(T) (= DSM 2912 = NBRC 15312) and propose its reclassification as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Klenk, Hans-Peter; Abt, Birte; Pukall, Ruediger; Goeker, Markus] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Lapidus, Alla; Chertkov, Olga; Copeland, Alex; Del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan-Fang; Han, Cliff; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Pati, Amrita; Ivanova, Natalia; Mavromatis, Konstantinos; Daum, Chris; Chang, Yun-juan; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.; Bristow, James; Hugenholtz, Philip; Eisen, Jonathan A.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Chertkov, Olga; Han, Cliff; Bruce, David; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Chang, Yun-juan; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Land,
   Miriam/A-6200-2011
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   German Research Foundation (DFG) [INST 599/1-1]
FX We would like to gratefully acknowledge the help of Claudia Wahrenburg
   for growing the B. tusciae cells, and Susanne Schneider for DNA
   extraction and quality analysis (both at DSMZ). This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, as well as German Research Foundation (DFG) INST
   599/1-1.
NR 49
TC 13
Z9 14
U1 3
U2 12
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 121
EP 134
DI 10.4056/sigs.2144922
PG 14
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200012
PM 22180816
ER

PT J
AU Kallimanis, A
   Karabika, E
   Mavromatis, K
   Lapidus, A
   LaButti, KM
   Liolios, K
   Ivanova, N
   Goodwin, L
   Woyke, T
   Velentzas, AD
   Perisynakis, A
   Ouzounis, CC
   Kyrpides, NC
   Koukkou, AI
   Drainas, C
AF Kallimanis, Aristeidis
   Karabika, Eugenia
   Mavromatis, Kostantinos
   Lapidus, Alla
   LaButti, Kurt M.
   Liolios, Konstantinos
   Ivanova, Natalia
   Goodwin, Lynne
   Woyke, Tanja
   Velentzas, Athanasios D.
   Perisynakis, Angelos
   Ouzounis, Christos C.
   Kyrpides, Nikos C.
   Koukkou, Anna I.
   Drainas, Constantin
TI Complete genome sequence of Mycobacterium sp strain (Spyr1) and
   reclassification to Mycobacterium gilvum Spyr1
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE Mycobacterium gilvum; PAH biodegradation; pyrene degradation
ID POLYCYCLIC AROMATIC-HYDROCARBONS; CLASSIFICATION; PROPOSAL; PYRENE;
   SYSTEM; ACTINOBACTERIA; IDENTIFICATION; DEGRADATION; DEFINITION;
   BACTERIA
AB Mycobacterium sp. Spyr1 is a newly isolated strain that occurs in a creosote contaminated site in Greece. It was isolated by an enrichment method using pyrene as sole carbon and energy source and is capable of degrading a wide range of PAH substrates including pyrene, fluoranthene, fluorene, anthracene and acenapthene. Here we describe the genomic features of this organism, together with the complete sequence and annotation. The genome consists of a 5,547,747 bp chromosome and two plasmids, a larger and a smaller one with sizes of 211,864 and 23,681 bp, respectively. In total, 5,588 genes were predicted and annotated.
C1 [Kallimanis, Aristeidis; Karabika, Eugenia; Perisynakis, Angelos; Koukkou, Anna I.; Drainas, Constantin] Univ Ioannina, Sect Organ Chem & Biochem, GR-45110 Ioannina, Greece.
   [Mavromatis, Kostantinos; Lapidus, Alla; LaButti, Kurt M.; Liolios, Konstantinos; Ivanova, Natalia; Goodwin, Lynne; Woyke, Tanja; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Velentzas, Athanasios D.] Univ Athens, Fac Biol, Dept Cell Biol & Biophys, Athens 15701, Greece.
   [Ouzounis, Christos C.] Kings Coll London, Ctr Bioinformat, Dept Informat, Sch Nat & Math Sci, London WC2R 2LS, England.
RP Koukkou, AI (reprint author), Univ Ioannina, Sect Organ Chem & Biochem, GR-45110 Ioannina, Greece.
EM akukku@cc.uoi.gr
RI Lapidus, Alla/I-4348-2013; Ouzounis, Christos/G-2302-2010; Kyrpides,
   Nikos/A-6305-2014; 
OI Lapidus, Alla/0000-0003-0427-8731; Kyrpides, Nikos/0000-0002-6131-0462;
   Velentzas, Athanasios D./0000-0002-9755-395X; Ivanova,
   Natalia/0000-0002-5802-9485
FU National Funds; European Social Funds (ESF); European Commission
   [222886-2]; MICROME [222886-2]; US Department of Energy Office of
   Science, Biological and Environmental Research; University of
   California, Lawrence Berkeley National Laboratory [DE-AC02-05CH11231];
   Lawrence Livermore National Laboratory [DE-AC52-07NA27344]; Los Alamos
   National Laboratory [DE-AC02-06NA25396]
FX This work was funded by the program "Pythagoras II" of EPEAEK with 25%
   National Funds and 75% European Social Funds (ESF) and partly supported
   by the European Commission FP7 Collaborative Project MICROME (grant
   agreement number 222886-2). Sequencing and annotation was supported by
   the US Department of Energy Office of Science, Biological and
   Environmental Research Program, and by the University of California,
   Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396.
NR 24
TC 9
Z9 9
U1 1
U2 8
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 1
BP 144
EP 153
DI 10.4056/sigs.2265047
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GU
UT WOS:000298944200014
PM 22180818
ER

PT J
AU Pati, A
   Heath, LS
   Kyrpides, NC
   Ivanova, N
AF Pati, Amrita
   Heath, Lenwood S.
   Kyrpides, Nikos C.
   Ivanova, Natalia
TI ClaMS: A Classifier for Metagenomic Sequences
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
ID PHYLOGENETIC CLASSIFICATION
AB ClaMS - "Classifier for Metagenomic Sequences" - is a Java application for binning assembled contigs in metagenomes using user-specified training sets and initial parameters. Since ClaMS trains on sequence composition-based genomic signatures, it is much faster than binning tools that rely on alignments to homologs; ClaMS can bin similar to 20,000 sequences in 3 minutes on a laptop with a 2.4 GHx Intel Core 2 Duo processor and 2 GB RAM. ClaMS is meant to be a desktop application for biologists and can be run on any machine under any Operating System on which the Java Runtime Environment can be installed.
C1 [Pati, Amrita; Kyrpides, Nikos C.; Ivanova, Natalia] DOE Joint Genome Inst, Genome Biol Program, Walnut Creek, CA 94598 USA.
   [Heath, Lenwood S.] Virginia Tech, Dept Comp Sci, Blacksburg, VA 24061 USA.
RP Pati, A (reprint author), DOE Joint Genome Inst, Genome Biol Program, Walnut Creek, CA 94598 USA.
EM apati@lbl.gov
RI Kyrpides, Nikos/A-6305-2014; 
OI Kyrpides, Nikos/0000-0002-6131-0462; Ivanova,
   Natalia/0000-0002-5802-9485
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396]
FX ClaMS was developed under the auspices of the US Department of Energy
   Office of Science, Biological and Environmental Research Program and by
   the University of California, Lawrence Berkeley National Laboratory
   under contract DE-AC02-05CH11231, Lawrence Livermore National Laboratory
   under contract DE-AC52-07NA27344 and Los Alamos National Laboratory
   under contract DE-AC02-06NA25396.
NR 9
TC 20
Z9 20
U1 1
U2 7
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 5
IS 2
BP 248
EP 253
DI 10.4056/sigs.2075298
PG 6
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GV
UT WOS:000298944300006
PM 22180827
ER

PT J
AU Abt, B
   Teshima, H
   Lucas, S
   Lapidus, A
   Del Rio, TG
   Nolan, M
   Tice, H
   Cheng, JF
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Pati, A
   Tapia, R
   Han, C
   Goodwin, L
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Rohde, M
   Goker, M
   Tindall, BJ
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Klenk, HP
   Kyrpides, NC
AF Abt, Birte
   Teshima, Hazuki
   Lucas, Susan
   Lapidus, Alla
   Del Rio, Tijana Glavina
   Nolan, Matt
   Tice, Hope
   Cheng, Jan-Fang
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Pati, Amrita
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Rohde, Manfred
   Goeker, Markus
   Tindall, Brian J.
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Klenk, Hans-Peter
   Kyrpides, Nikos C.
TI Complete genome sequence of Leadbetterella byssophila type strain
   (4M15(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE non-motile; non-sporulating; aerobic; mesophile; Gram-negative;
   flexirubin; Cytophagaceae; GEBA
ID SP-NOV.; GEN.-NOV.; FAMILY FLEXIBACTERACEAE; PHYLOGENETIC ANALYSIS;
   BACTERIA; ARCHAEA; IDENTIFICATION; ALGORITHM; DATABASE; SYSTEM
AB Leadbetterella byssophila Weon et al. 2005 is the type species of the genus Leadbetterella of the family Cytophagaceae in the phylum Bacteroidetes. Members of the phylum Bacteroidetes are widely distributed in nature, especially in aquatic environments. They are of special interest for their ability to degrade complex biopolymers. L. byssophila occupies a rather isolated position in the tree of life and is characterized by its ability to hydrolyze starch and gelatine, but not agar, cellulose or chitin. Here we describe the features of this organism, together with the complete genome sequence, and annotation. L. byssophila is already the 16(th) member of the family Cytophagaceae whose genome has been sequenced. The 4,059,653 bp long single replicon genome with its 3,613 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Teshima, Hazuki; Lucas, Susan; Lapidus, Alla; Del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Cheng, Jan-Fang; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Pati, Amrita; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
   [Abt, Birte; Goeker, Markus; Tindall, Brian J.; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Teshima, Hazuki; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Lawrence Livermore Natl Lab, Livermore, CA USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Kyrpides, NC (reprint author), US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; German Research Foundation (DFG) [INST 599/1-2]; Oak Ridge
   National Laboratory [DE-AC05-00OR22725]
FX We would like to gratefully acknowledge the help of Helga Pomrenke for
   growing L. byssophila cultures, Susanne Schneider for DNA extraction and
   quality analysis and Jennifer Gregor for substrate assays (all at DSMZ).
   This work was performed under the auspices of the US Department of
   Energy Office of Science, Biological and Environmental Research Program,
   and by the University of California, Lawrence Berkeley National
   Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore
   National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos
   National Laboratory under contract No. DE-AC02-06NA25396, UT-Battelle
   and Oak Ridge National Laboratory under contract DE-AC05-00OR22725, as
   well as German Research Foundation (DFG) INST 599/1-2.
NR 43
TC 8
Z9 9
U1 1
U2 10
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 2
EP 12
DI 10.4056/sigs.1413518
PG 11
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400001
PM 21475582
ER

PT J
AU Chertkov, O
   Sikorski, J
   Nolan, M
   Lapidus, A
   Lucas, S
   Del Rio, TG
   Tice, H
   Cheng, JF
   Goodwin, L
   Pitluck, S
   Liolios, K
   Ivanova, N
   Mavromatis, K
   Mikhailova, N
   Ovchinnikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Djao, ODN
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Brettin, T
   Han, C
   Detter, JC
   Rohde, M
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Klenk, HP
   Kyrpides, NC
AF Chertkov, Olga
   Sikorski, Johannes
   Nolan, Matt
   Lapidus, Alla
   Lucas, Susan
   Del Rio, Tijana Glavina
   Tice, Hope
   Cheng, Jan-Fang
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Ovchinnikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Djao, Olivier D. Ngatchou
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Brettin, Thomas
   Han, Cliff
   Detter, John C.
   Rohde, Manfred
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Klenk, Hans-Peter
   Kyrpides, Nikos C.
TI Complete genome sequence of Thermomonospora curvata type strain (B9(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE chemoorganotroph; facultative aerobe; eurythermal thermophile; mycelium;
   Gram-positive; cellulose degradation; Thermomonosporaceae; GEBA
ID CELLULOLYTIC ACTIVITY; CELLULASE BIOSYNTHESIS; BACTERIA; CLASSIFICATION;
   PROPOSAL; ARCHAEA; SYSTEM; ACTINOBACTERIA; IDENTIFICATION; PURIFICATION
AB Thermomonospora curvata Henssen 1957 is the type species of the genus Thermomonospora. This genus is of interest because members of this clade are sources of new antibiotics, enzymes, and products with pharmacological activity. In addition, members of this genus participate in the active degradation of cellulose. This is the first complete genome sequence of a member of the family Thermomonosporaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 5,639,016 bp long genome with its 4,985 protein-coding and 76 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Chertkov, Olga; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan-Fang; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Ovchinnikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Brettin, Thomas; Han, Cliff; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
   [Chertkov, Olga; Goodwin, Lynne; Han, Cliff; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Sikorski, Johannes; Goeker, Markus] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Djao, Olivier D. Ngatchou; Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Brettin, Thomas] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Kyrpides, NC (reprint author), US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
RI Kyrpides, Nikos/A-6305-2014; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011
OI Kyrpides, Nikos/0000-0002-6131-0462; Lapidus, Alla/0000-0003-0427-8731;
   Land, Miriam/0000-0001-7102-0031
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; German Research Foundation (DFG) [INST 599/1-1]; Oak Ridge
   National Laboratory [DE-AC05-00OR22725]
FX We would like to gratefully acknowledge the help of Marlen Jando for
   growing T. curvata cultures and Susanne Schneider for DNA extraction and
   quality analysis (both at DSMZ). This work was performed under the
   auspices of the US Department of Energy Office of Science, Biological
   and Environmental Research Program, and by the University of California,
   Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-1.
NR 53
TC 12
Z9 22
U1 2
U2 5
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 13
EP 22
DI 10.4056/sigs.1453580
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400002
PM 21475583
ER

PT J
AU Muyzer, G
   Sorokin, DY
   Mavromatis, K
   Lapidus, A
   Clum, A
   Ivanova, N
   Pati, A
   d'Haeseleer, P
   Woyke, T
   Kyrpides, NC
AF Muyzer, Gerard
   Sorokin, Dimitry Yu
   Mavromatis, Konstantinos
   Lapidus, Alla
   Clum, Alicia
   Ivanova, Natalia
   Pati, Amrita
   d'Haeseleer, Patrick
   Woyke, Tanja
   Kyrpides, Nikos C.
TI Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE haloalkaliphilic; sulfide; thiosulfate; sulfur-oxidizing bacteria (SOB)
ID SULFUR-OXIDIZING BACTERIA; SODA LAKES; GLYCINE BETAINE; RIBOSOMAL-RNA;
   ALKALINE PH; SP-NOV; SYSTEM; DENITRIFICATION; CARBOXYSOMES; THIOCYANATE
AB "Thioalkalivibrio sulfidophilus" HL-EbGr7 is an obligately chemolithoautotrophic, haloalkaliphilic sulfur-oxidizing bacterium (SOB) belonging to the Gammaproteobacteria. The strain was found to predominate a full-scale bioreactor, removing sulfide from biogas. Here we report the complete genome sequence of strain HL-EbGr7 and its annotation. The genome was sequenced within the Joint Genome Institute Community Sequencing Program, because of its relevance to the sustainable removal of sulfide from bio- and industrial waste gases.
C1 [Muyzer, Gerard; Sorokin, Dimitry Yu] Delft Univ Technol, Dept Biotechnol, Delft, Netherlands.
   [Sorokin, Dimitry Yu] Russian Acad Sci, Winogradsky Inst Microbiol, Moscow, Russia.
   [Mavromatis, Konstantinos; Lapidus, Alla; Clum, Alicia; Ivanova, Natalia; Pati, Amrita; Woyke, Tanja; Kyrpides, Nikos C.] Joint Genome Inst, Walnut Creek, CA USA.
   [d'Haeseleer, Patrick] Joint Bioenergy Inst, Berkeley, CA 94720 USA.
RP Muyzer, G (reprint author), Delft Univ Technol, Dept Biotechnol, Delft, Netherlands.
RI Muyzer, Gerard/A-3161-2013; Lapidus, Alla/I-4348-2013; Kyrpides,
   Nikos/A-6305-2014; 
OI Ivanova, Natalia/0000-0002-5802-9485; Lapidus, Alla/0000-0003-0427-8731;
   Kyrpides, Nikos/0000-0002-6131-0462; Muyzer, Gerard/0000-0002-2422-0732
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; RFBR [10-04-00152]; Oak Ridge National Laboratory
   [DE-AC05-00OR22725]
FX This work was performed under the auspices of the US Department of
   Energy Office of Science, Biological and Environmental Research Program,
   and by the University of California, Lawrence Berkeley National
   Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore
   National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos
   National Laboratory under contract No. DE-AC02-06NA25396, UT-Battelle
   and Oak Ridge National Laboratory under contract DE-AC05-00OR22725. DS
   was supported financially by RFBR grant 10-04-00152.
NR 45
TC 21
Z9 280
U1 5
U2 24
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 23
EP 35
DI 10.4056/sigs.1483693
PG 13
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400003
PM 21475584
ER

PT J
AU Gronow, S
   Munk, C
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Ivanova, N
   Mavromatis, K
   Mikhailova, N
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Brambilla, E
   Rohde, M
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
AF Gronow, Sabine
   Munk, Christine
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Brambilla, Evelyne
   Rohde, Manfred
   Goeker, Markus
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
TI Complete genome sequence of Paludibacter propionicigenes type strain
   (WB4(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly anaerobic; nonmotile; Gram-negative; anoxic rice-field soil;
   mesophilic; chemoorganotrophic; Porphyromonadaceae; GEBA
ID PLANT RESIDUE; FIELD SOIL; BACTERIA; ARCHAEA; PHYLOGENY; ALGORITHM;
   DATABASE; SYSTEM; GRAPHS
AB Paludibacter propionicigenes Ueki et al. 2006 is the type species of the genus Paludibacter, which belongs to the family Porphyromonadaceae. The species is of interest because of the position it occupies in the tree of life where it can be found in close proximity to members of the genus Dysgonomonas. This is the first completed genome sequence of a member of the genus Paludibacter and the third sequence from the family Porphyromonadaceae. The 3,685,504 bp long genome with its 3,054 protein-coding and 64 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Gronow, Sabine; Brambilla, Evelyne; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Munk, Christine; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] US DOE, Joint Genome Inst, Walnut Creek, CA USA.
   [Munk, Christine; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Land,
   Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; German Research Foundation (DFG) [INST 599/1-2]; Oak Ridge
   National Laboratory [DE-AC05-00OR22725]
FX We would like to gratefully acknowledge the help of Sabine Welnitz
   (DSMZ) for growing P. propionicigenes cultures. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 28
TC 13
Z9 14
U1 1
U2 11
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 36
EP 44
DI 10.4056/sigs.1503846
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400004
PM 21475585
ER

PT J
AU Pati, A
   Gronow, S
   Zeytun, A
   Lapidus, A
   Nolan, M
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Detter, JC
   Brambilla, E
   Rohde, M
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Lucas, S
AF Pati, Amrita
   Gronow, Sabine
   Zeytun, Ahmet
   Lapidus, Alla
   Nolan, Matt
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Detter, John C.
   Brambilla, Evelyne
   Rohde, Manfred
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Lucas, Susan
TI Complete genome sequence of Bacteroides helcogenes type strain (P
   36-108(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly anaerobic; mesophilic; nonmotile; Gram-negative;
   chemoorganotrophic; pig abscess; animal pathogen; Bacteroidaceae; GEBA
ID BACTERIA; ARCHAEA; ALGORITHM; FRAGILIS; DATABASE; PROPOSAL; SYSTEM;
   GRAPHS; NOV
AB Bacteroides helcogenes Benno et al. 1983 is of interest because of its isolated phylogenetic location and, although it has been found in pig feces and is known to be pathogenic for pigs, occurrence of this bacterium is rare and it does not cause significant damage in intensive animal husbandry. The genome of B. helcogenes P 36-108(T) is already the fifth completed and published type strain genome from the genus Bacteroides in the family Bacteroidaceae. The 3,998,906 bp long genome with its 3,353 protein-coding and 83 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Gronow, Sabine; Brambilla, Evelyne; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Pati, Amrita; Zeytun, Ahmet; Lapidus, Alla; Nolan, Matt; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Lucas, Susan] US DOE, Joint Genome Inst, Walnut Creek, CA USA.
   [Zeytun, Ahmet; Tapia, Roxane; Han, Cliff; Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; German Research Foundation (DFG) [INST 599/1-2]; Oak Ridge
   National Laboratory [DE-AC05-00OR22725]
FX We would like to gratefully acknowledge the help of Sabine Welnitz
   (DSMZ) for growing B. helcogenes cultures. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 36
TC 6
Z9 8
U1 1
U2 5
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 45
EP 53
DI 10.4056/sigs.1513795
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400005
PM 21475586
ER

PT J
AU Pitluck, S
   Sikorski, J
   Zeytun, A
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Pati, A
   Chen, A
   Palaniappan, K
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Detter, JC
   Brambilla, E
   Djao, ODN
   Rohde, M
   Spring, S
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Land, M
AF Pitluck, Sam
   Sikorski, Johannes
   Zeytun, Ahmet
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Detter, John C.
   Brambilla, Evelyne
   Djao, Oliver D. Ngatchou
   Rohde, Manfred
   Spring, Stefan
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Land, Miriam
TI Complete genome sequence of Calditerrivibrio nitroreducens type strain
   (Yu37-1(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE moderately thermophilic; strictly anaerobic; motile; Gram-negative;
   chemoorganoheterotroph; hot spring; Deferribacteraceae; GEBA
ID DENITROVIBRIO-ACETIPHILUS; BACTERIUM; ARCHAEA; ALGORITHM; RESERVOIR;
   DATABASE; SYSTEM; GRAPHS; GENUS; NOV
AB Calditerrivibrio nitroreducens Iino et al. 2008 is the type species of the genus Calditerrivibrio. The species is of interest because of its important role in the nitrate cycle as nitrate reducer and for its isolated phylogenetic position in the Tree of Life. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the third complete genome sequence of a member of the family Deferribacteraceae. The 2,216,552 bp long genome with its 2,128 protein-coding and 50 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Sikorski, Johannes; Brambilla, Evelyne; Spring, Stefan; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Pitluck, Sam; Zeytun, Ahmet; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Pati, Amrita; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Land, Miriam] US DOE, Joint Genome Inst, Walnut Creek, CA USA.
   [Zeytun, Ahmet; Tapia, Roxane; Han, Cliff; Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Land, Miriam] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Djao, Oliver D. Ngatchou; Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Spring, Stefan/N-6933-2013; Land, Miriam/A-6200-2011;
   Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Spring, Stefan/0000-0001-6247-0938;
   Land, Miriam/0000-0001-7102-0031; Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; German Research Foundation (DFG) [INST 599/1-1]; Oak Ridge
   National Laboratory [DE-AC05-00OR22725]
FX We would like to gratefully acknowledge the help of Maren Schroder
   (DSMZ) for the growth of C. nitroreducens cultures. This work was
   performed under the auspices of the US Department of Energy Office of
   Science, Biological and Environmental Research Program, and by the
   University of California, Lawrence Berkeley National Laboratory under
   contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory
   under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory
   under contract No. DE-AC02-06NA25396, UT-Battelle, and Oak Ridge
   National Laboratory under contract DE-AC05-00OR22725, as well as German
   Research Foundation (DFG) INST 599/1-1.
NR 33
TC 6
Z9 9
U1 1
U2 6
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 54
EP 62
DI 10.4056/sigs.1523807
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400006
PM 21475587
ER

PT J
AU Goker, M
   Cleland, D
   Saunders, E
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Detter, JC
   Beck, B
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
AF Goeker, Markus
   Cleland, David
   Saunders, Elizabeth
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Detter, John C.
   Beck, Brian
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
TI Complete genome sequence of Isosphaera pallida type strain (IS1B(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE thermophilic; aerobic; filamentous; budding; gliding motility;
   Gram-negative; phototactic comets; gas vesicles; chemoheterotrophic; hot
   spring; Planctomycetaceae; GEBA
ID BUDDING EUBACTERIUM; HOT-SPRINGS; BACTERIA; ARCHAEA; PLANCTOMYCES;
   ALGORITHM; DATABASE; SYSTEM; GRAPHS; NOV
AB Isosphaera pallida (ex Woronichin 1927) Giovannoni et al. 1995 is the type species of the genus Isosphaera. The species is of interest because it was the first heterotrophic bacterium known to be phototactic, and it occupies an isolated phylogenetic position within the Planctomycetaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of a member of the genus Isosphaera and the third of a member of the family Planctomycetaceae. The 5,472,964 bp long chromosome and the 56,340 bp long plasmid with a total of 3,763 protein-coding and 60 RNA genes are part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Cleland, David; Beck, Brian] ATCC Amer Type Culture Collect, Manassas, VA USA.
   [Saunders, Elizabeth; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Pati, Amrita; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] US DOE, Joint Genome Inst, Walnut Creek, CA USA.
   [Saunders, Elizabeth; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; Oak Ridge National Laboratory [DE-AC05-00OR22725]
FX This work was performed under the auspices of the US Department of
   Energy Office of Science, Biological and Environmental Research Program,
   and by the University of California, Lawrence Berkeley National
   Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore
   National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos
   National Laboratory under contract No. DE-AC02-06NA25396, UT-Battelle,
   and Oak Ridge National Laboratory under contract DE-AC05-00OR22725.
NR 33
TC 22
Z9 23
U1 3
U2 6
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 63
EP 71
DI 10.4056/sigs.1533840
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400007
PM 21475588
ER

PT J
AU Abt, B
   Lu, M
   Misra, M
   Han, C
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Ovchinikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Detter, JC
   Brambilla, E
   Rohde, M
   Tindall, BJ
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Lapidus, A
AF Abt, Birte
   Lu, Megan
   Misra, Monica
   Han, Cliff
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxane
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Detter, John C.
   Brambilla, Evelyne
   Rohde, Manfred
   Tindall, Brian J.
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Lapidus, Alla
TI Complete genome sequence of Cellulophaga algicola type strain (IC166(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE aerobic; motile by gliding; Gram-negative; agarolytic;
   chemoorganotrophic; cold adapted enzymes; Flavobacteriaceae; GEBA
ID EMENDED DESCRIPTION; COMB. NOV; BACTERIA; ARCHAEA; FLAVOBACTERIACEAE;
   RECLASSIFICATION; CLASSIFICATION; ALGORITHM; DATABASE; PROPOSAL
AB Cellulophaga algicola Bowman 2000 belongs to the family Flavobacteriaceae within the phylum 'Bacteroidetes' and was isolated from Melosira collected from the Eastern Antarctic coastal zone. The species is of interest because its members produce a wide range of extracellular enzymes capable of degrading proteins and polysaccharides with temperature optima of 20-30 degrees C. This is the first completed genome sequence of a member of the genus Cellulophaga. The 4,888,353 bp long genome with its 4,285 protein-coding and 62 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Lu, Megan; Misra, Monica; Han, Cliff; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Lapidus, Alla] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
   [Abt, Birte; Brambilla, Evelyne; Tindall, Brian J.; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Lu, Megan; Misra, Monica; Han, Cliff; Tapia, Roxane; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Lapidus, A (reprint author), US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; German Research Foundation (DFG) [INST 599/1-2]; Oak Ridge
   National Laboratory [DE-AC05-00OR22725]
FX We would like to gratefully acknowledge the help of Regine Fahnrich
   (DSMZ) for growing C. algicola cultures. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 36
TC 8
Z9 8
U1 3
U2 6
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 72
EP 80
DI 10.4056/sigs.1543845
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400008
PM 21475589
ER

PT J
AU Lang, E
   Teshima, H
   Lucas, S
   Lapidus, A
   Hammon, N
   Deshpande, S
   Nolan, M
   Cheng, JF
   Pitluck, S
   Liolios, K
   Pagani, I
   Mikhailova, N
   Ivanova, N
   Mavromatis, K
   Pati, A
   Tapia, R
   Han, C
   Goodwin, L
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Brambilla, EM
   Kopitz, M
   Rohde, M
   Goker, M
   Tindall, BJ
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Klenk, HP
   Kyrpides, NC
AF Lang, Elke
   Teshima, Hazuki
   Lucas, Susan
   Lapidus, Alla
   Hammon, Nancy
   Deshpande, Shweta
   Nolan, Matt
   Cheng, Jan-Fang
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Mikhailova, Natalia
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Pati, Amrita
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Brambilla, Evelyne-Marie
   Kopitz, Markus
   Rohde, Manfred
   Goeker, Markus
   Tindall, Brian J.
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Klenk, Hans-Peter
   Kyrpides, Nikos C.
TI Complete genome sequence of Weeksella virosa type strain (9751(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly aerobic; slimy; Gram-negative; lyses proteins; inhabitant of
   mucosa; Flavobacteriaceae; GEBA
ID FORMERLY GROUP-IIF; SP NOV.; FAMILY FLAVOBACTERIACEAE; EMENDED
   DESCRIPTION; CLINICAL SPECIMENS; GEN.-NOV.; BACTERIA; CHRYSEOBACTERIUM;
   CLASSIFICATION; ARCHAEA
AB Weeksella virosa Holmes et al. 1987 is the sole member and type species of the genus Weeksella which belongs to the family Flavobacteriaceae of the phylum Bacteroidetes. Twenty-nine isolates, collected from clinical specimens provided the basis for the taxon description. While the species seems to be a saprophyte of the mucous membranes of healthy man and warm-blooded animals a causal relationship with disease has been reported in a few instances. Except for the ability to produce indole and to hydrolyze Tween and proteins such as casein and gelatin, this aerobic, non-motile, non-pigmented bacterial species is metabolically inert in most traditional biochemical tests. The 2,272,954 bp long genome with its 2,105 protein-coding and 76 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Teshima, Hazuki; Lucas, Susan; Lapidus, Alla; Hammon, Nancy; Deshpande, Shweta; Nolan, Matt; Cheng, Jan-Fang; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Mikhailova, Natalia; Ivanova, Natalia; Mavromatis, Konstantinos; Pati, Amrita; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
   [Lang, Elke; Brambilla, Evelyne-Marie; Kopitz, Markus; Goeker, Markus; Tindall, Brian J.; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Teshima, Hazuki; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Lawrence Livermore Natl Lab, Livermore, CA USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Kyrpides, NC (reprint author), US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; German Research Foundation (DFG) [INST 599/1-2]; Oak Ridge
   National Laboratory [DE-AC05-00OR22725]
FX This work was performed under the auspices of the US Department of
   Energy Office of Science, Biological and Environmental Research Program,
   and by the University of California, Lawrence Berkeley National
   Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore
   National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos
   National Laboratory under contract No. DE-AC02-06NA25396, UT-Battelle
   and Oak Ridge National Laboratory under contract DE-AC05-00OR22725, as
   well as German Research Foundation (DFG) INST 599/1-2.
NR 50
TC 5
Z9 5
U1 1
U2 5
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 81
EP 90
DI 10.4056/sigs.1603927
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400009
PM 21475590
ER

PT J
AU Ivanova, N
   Rohde, C
   Munk, C
   Nolan, M
   Lucas, S
   Del Rio, TG
   Tice, H
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Mavromatis, K
   Mikhailova, N
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Brambilla, E
   Rohde, M
   Goker, M
   Tindall, BJ
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Lapidus, A
AF Ivanova, Natalia
   Rohde, Christine
   Munk, Christine
   Nolan, Matt
   Lucas, Susan
   Del Rio, Tijana Glavina
   Tice, Hope
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Brambilla, Evelyne
   Rohde, Manfred
   Goeker, Markus
   Tindall, Brian J.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Lapidus, Alla
TI Complete genome sequence of Truepera radiovictrix type strain (RQ-24(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE aerobic; chemoorganotrophic; non-motile; thermophilic; facultatively
   halophilic; alkaliphilic; radiation resistant; Gram-indeterminate;
   spherical-shaped; Trueperaceae; GEBA
ID RADIATION-RESISTANCE; BACTERIA; ARCHAEA; ALGORITHM; DATABASE; PROPOSAL;
   SYSTEM; GRAPHS
AB Truepera radiovictrix Albuquerque et al. 2005 is the type species of the genus Truepera within the phylum "Deinococcus/Thermus". T. radiovictrix is of special interest not only because of its isolated phylogenetic location in the order Deinococcales, but also because of its ability to grow under multiple extreme conditions in alkaline, moderately saline, and high temperature habitats. Of particular interest is the fact that, T. radiovictrix is also remarkably resistant to ionizing radiation, a feature it shares with members of the genus Deinococcus. This is the first completed genome sequence of a member of the family Trueperaceae and the fourth type strain genome sequence from a member of the order Deinococcales. The 3,260,398 bp long genome with its 2,994 protein-coding and 52 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Ivanova, Natalia; Munk, Christine; Nolan, Matt; Lucas, Susan; Del Rio, Tijana Glavina; Tice, Hope; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Lapidus, Alla] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
   [Rohde, Christine; Brambilla, Evelyne; Goeker, Markus; Tindall, Brian J.; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Munk, Christine; Tapia, Roxane; Han, Cliff; Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Lapidus, A (reprint author), US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA.
RI Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Land,
   Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; German Research Foundation (DFG) [INST 599/1-2]; Oak Ridge
   National Laboratory [DE-AC05-00OR22725]
FX We would like to gratefully acknowledge the help of Helga Pomrenke
   (DSMZ) for growing T. radiovictrix cultures. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 35
TC 12
Z9 12
U1 2
U2 11
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 91
EP 99
DI 10.4056/sigs.1563919
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400010
PM 21475591
ER

PT J
AU Pagani, I
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Chertkov, O
   Davenport, K
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Mavromatis, K
   Ivanova, N
   Mikhailova, N
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Detter, JC
   Brambilla, E
   Kannan, KP
   Djao, ODN
   Rohde, M
   Pukall, R
   Spring, S
   Goker, M
   Sikorski, J
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
AF Pagani, Ioanna
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Chertkov, Olga
   Davenport, Karen
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Mavromatis, Konstantinos
   Ivanova, Natalia
   Mikhailova, Natalia
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Detter, John C.
   Brambilla, Evelyne
   Kannan, K. Palani
   Djao, Olivier D. Ngatchou
   Rohde, Manfred
   Pukall, Ruediger
   Spring, Stefan
   Goeker, Markus
   Sikorski, Johannes
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
TI Complete genome sequence of Desulfobulbus propionicus type strain
   (1pr3(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE anaerobic; non-motile; Gram-negative; chemoorganotroph; ellipsoidal to
   lemon-shaped; non spore-forming; mesophilic; Desulfobulbaceae; GEBA
ID SULFATE-REDUCING BACTERIA; CELLULAR FATTY-ACIDS; ELEMENTAL SULFUR;
   OXIDATION; SEDIMENTS; ARCHAEA; ABSENCE; DESULFOBACTER; ALGORITHM;
   DATABASE
AB Desulfobulbus propionicus Widdel 1981 is the type species of the genus Desulfobulbus, which belongs to the family Desulfobulbaceae. The species is of interest because of its great implication in the sulfur cycle in aquatic sediments, its large substrate spectrum and a broad versatility in using various fermentation pathways. The species was the first example of a pure culture known to disproportionate elemental sulfur to sulfate and sulfide. This is the first completed genome sequence of a member of the genus Desulfobulbus and the third published genome sequence from a member of the family Desulfobulbaceae. The 3,851,869 bp long genome with its 3,351 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Brambilla, Evelyne; Kannan, K. Palani; Pukall, Ruediger; Spring, Stefan; Goeker, Markus; Sikorski, Johannes; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Pagani, Ioanna; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Chertkov, Olga; Davenport, Karen; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] US DOE, Joint Genome Inst, Walnut Creek, CA USA.
   [Chertkov, Olga; Davenport, Karen; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Djao, Olivier D. Ngatchou; Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Spring, Stefan/N-6933-2013; Land, Miriam/A-6200-2011; Kyrpides,
   Nikos/A-6305-2014; Pagani, Ioanna/E-7390-2012; Hauser,
   Loren/H-3881-2012; Lapidus, Alla/I-4348-2013
OI Spring, Stefan/0000-0001-6247-0938; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462; Lapidus, Alla/0000-0003-0427-8731
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; German Research Foundation (DFG) [INST 599/1-2]; Oak Ridge
   National Laboratory [DE-AC05-00OR22725]
FX We would like to gratefully acknowledge the help of Katja Steenblock
   (DSMZ) for growing D. propionicus cultures. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 45
TC 15
Z9 15
U1 1
U2 24
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 1
BP 100
EP 110
DI 10.4056/sigs.1613929
PG 11
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 759EL
UT WOS:000290223400011
PM 21475592
ER

PT J
AU Kallimanis, A
   LaButti, KM
   Lapidus, A
   Clum, A
   Lykidis, A
   Mavromatis, K
   Pagani, I
   Liolios, K
   Ivanova, N
   Goodwin, L
   Pitluck, S
   Chen, A
   Palaniappan, K
   Markowitz, V
   Bristow, J
   Velentzas, AD
   Perisynakis, A
   Ouzounis, CC
   Kyrpides, NC
   Koukkou, AI
   Drainas, C
AF Kallimanis, Aristeidis
   LaButti, Kurt M.
   Lapidus, Alla
   Clum, Alicia
   Lykidis, Athanasios
   Mavromatis, Kostantinos
   Pagani, Ioanna
   Liolios, Konstantinos
   Ivanova, Natalia
   Goodwin, Lynne
   Pitluck, Sam
   Chen, Amy
   Palaniappan, Krishna
   Markowitz, Victor
   Bristow, Jim
   Velentzas, Athanasios D.
   Perisynakis, Angelos
   Ouzounis, Christos C.
   Kyrpides, Nikos C.
   Koukkou, Anna I.
   Drainas, Constantin
TI Complete genome sequence of Arthrobacter phenanthrenivorans type strain
   (Sphe3)
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE Arthrobacter; dioxygenases; PAH biodegradation; phenanthrene degradation
ID DEGRADING BACTERIUM; IDENTIFICATION; CLASSIFICATION; PROPOSAL; SYSTEM;
   ACTINOBACTERIA; DEGRADATION; NOV
AB Arthrobacter phenanthrenivorans is the type species of the genus, and is able to metabolize phenanthrene as a sole source of carbon and energy. A. phenanthrenivorans is an aerobic, non-motile, and Gram-positive bacterium, exhibiting a rod-coccus growth cycle which was originally isolated from a creosote polluted site in Epirus, Greece. Here we describe the features of this organism, together with the complete genome sequence, and annotation.
C1 [Kallimanis, Aristeidis; Perisynakis, Angelos; Koukkou, Anna I.; Drainas, Constantin] Univ Ioannina, Sector Organ Chem & Biochem, GR-45110 Ioannina, Greece.
   [LaButti, Kurt M.; Lapidus, Alla; Clum, Alicia; Lykidis, Athanasios; Mavromatis, Kostantinos; Pagani, Ioanna; Liolios, Konstantinos; Ivanova, Natalia; Goodwin, Lynne; Pitluck, Sam; Bristow, Jim; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Velentzas, Athanasios D.] Univ Athens, Fac Biol, Dept Cell Biol & Biophys, Athens, Greece.
   [Ouzounis, Christos C.] Kings Coll London, Dept Informat, Ctr Bioinformat, Sch Nat & Math Sci, London WC2R 2LS, England.
RP Koukkou, AI (reprint author), Univ Ioannina, Sector Organ Chem & Biochem, GR-45110 Ioannina, Greece.
EM akukku@cc.uoi.gr
RI Lapidus, Alla/I-4348-2013; Ouzounis, Christos/G-2302-2010; Kyrpides,
   Nikos/A-6305-2014; Pagani, Ioanna/E-7390-2012
OI Lapidus, Alla/0000-0003-0427-8731; Kyrpides, Nikos/0000-0002-6131-0462;
   Velentzas, Athanasios D./0000-0002-9755-395X; Ivanova,
   Natalia/0000-0002-5802-9485; 
FU EPEAEK; European Social Funds (ESF); US Department of Energy Office of
   Science; University of California, Lawrence Berkeley National Laboratory
   [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396]
FX This work was supported by the program "Pythagoras II" of EPEAEK with
   25% National Funds and 75% European Social Funds (ESF). NCK is supported
   by the US Department of Energy Office of Science, Biological and
   Environmental Research Program, and by the University of California,
   Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396.
NR 21
TC 9
Z9 10
U1 4
U2 15
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 123
EP 130
DI 10.4056/sigs.1393494
PG 8
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300002
PM 21677849
ER

PT J
AU Zeytun, A
   Sikorski, J
   Nolan, M
   Lapidus, A
   Lucas, S
   Han, J
   Tice, H
   Cheng, JF
   Tapia, R
   Goodwin, L
   Pitluck, S
   Liolios, K
   Ivanova, N
   Mavromatis, K
   Mikhailova, N
   Ovchinnikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Ngatchou-Djao, OD
   Land, M
   Hauser, L
   Jeffries, CD
   Han, C
   Detter, JC
   Ubler, S
   Rohde, M
   Tindall, BJ
   Goker, M
   Wirth, R
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Klenk, HP
   Kyrpides, NC
AF Zeytun, Ahmet
   Sikorski, Johannes
   Nolan, Matt
   Lapidus, Alla
   Lucas, Susan
   Han, James
   Tice, Hope
   Cheng, Jan-Fang
   Tapia, Roxanne
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Ovchinnikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Ngatchou-Djao, Olivier D.
   Land, Miriam
   Hauser, Loren
   Jeffries, Cynthia D.
   Han, Cliff
   Detter, John C.
   Uebler, Susanne
   Rohde, Manfred
   Tindall, Brian J.
   Goeker, Markus
   Wirth, Reinhard
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Klenk, Hans-Peter
   Kyrpides, Nikos C.
TI Complete genome sequence of Hydrogenobacter thermophilus type strain
   (TK-6(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly thermophilic; obligately chemolithoautotrophic; Gram-negative;
   aerobic; hydrogen-oxidizing; nonmotile; non sporeforming; rod shaped;
   Aquificaceae; Aquificae; GE-BA
ID TRICARBOXYLIC-ACID CYCLE; OXIDIZING BACTERIUM; SP-NOV; GENUS
   HYDROGENOBACTER; ELEMENTAL SULFUR; AQUIFICALES; ARCHAEA; GROWTH;
   2-METHYLTHIO-1,4-NAPHTHOQUINONE; PURIFICATION
AB Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO2 via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain derived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Zeytun, Ahmet; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Han, James; Tice, Hope; Cheng, Jan-Fang; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Ovchinnikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Han, Cliff; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Sikorski, Johannes; Tindall, Brian J.; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Zeytun, Ahmet; Tapia, Roxanne; Goodwin, Lynne; Han, Cliff; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Ngatchou-Djao, Olivier D.; Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Uebler, Susanne; Wirth, Reinhard] Univ Regensburg, Archaea Ctr, Regensburg, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Kyrpides, NC (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Land,
   Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science; University of California,
   Lawrence Berkeley National Laboratory [DE-AC02-05CH11231]; Lawrence
   Livermore National Laboratory [DE-AC52-07NA27344]; Los Alamos National
   Laboratory [DE-AC02-06NA25396]; UT-Battelle; Oak Ridge National
   Laboratory [DE-AC05-00OR22725]; German Research Foundation (DFG) [INST
   599/1-1]
FX We would like to gratefully acknowledge the help of Susanne Schneider
   (DSMZ) for DNA extraction and quality analysis. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle, and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-1.
NR 59
TC 4
Z9 14
U1 2
U2 6
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 131
EP 143
DI 10.4056/sigs.1463589
PG 13
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300003
PM 21677850
ER

PT J
AU Mavromatis, K
   Lu, M
   Misra, M
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mikhailova, N
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Jeffries, CD
   Detter, JC
   Brambilla, EM
   Rohde, M
   Goker, M
   Gronow, S
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Klenk, HP
   Kyrpides, NC
AF Mavromatis, Konstantinos
   Lu, Megan
   Misra, Monica
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mikhailova, Natalia
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Jeffries, Cynthia D.
   Detter, John C.
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Goeker, Markus
   Gronow, Sabine
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Klenk, Hans-Peter
   Kyrpides, Nikos C.
TI Complete genome sequence of Riemerella anatipestifer type strain (ATCC
   11845(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE capnophilic; non-motile; Gram-negative; poultry pathogen; mesophilic;
   chemoorganotrophic; Flavobacteriaceae; GEBA
ID EMENDED DESCRIPTION; FLAVOBACTERIUM; ORGANISMS; BACTERIA; ARCHAEA;
   FAMILY; NOV; CLASSIFICATION; PASTEURELLA; ALGORITHM
AB Riemerella anatipestifer (Hendrickson and Hilbert 1932) Segers et al. 1993 is the type species of the genus Riemerella, which belongs to the family Flavobacteriaceae. The species is of interest because of the position of the genus in the phylogenetic tree and because of its role as a pathogen of commercially important avian species worldwide. This is the first completed genome sequence of a member of the genus Riemerella. The 2,155,121 bp long genome with its 2,001 protein-coding and 51 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Mavromatis, Konstantinos; Lu, Megan; Misra, Monica; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Lu, Megan; Misra, Monica; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Brambilla, Evelyne-Marie; Goeker, Markus; Gronow, Sabine; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Kyrpides, NC (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014; Pagani,
   Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013
OI Land, Miriam/0000-0001-7102-0031; Kyrpides, Nikos/0000-0002-6131-0462;
   Lapidus, Alla/0000-0003-0427-8731
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; Oak Ridge National Laboratory [DE-AC05-00OR22725]; German
   Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Sabine Welnitz
   (DSMZ) for growing R. anatipestifer cultures. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 49
TC 17
Z9 21
U1 1
U2 5
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 144
EP 153
DI 10.4056/sigs.1553862
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300004
PM 21677851
ER

PT J
AU Pagani, I
   Chertkov, O
   Lapidus, A
   Lucas, S
   Del Rio, TG
   Tice, H
   Copeland, A
   Cheng, JF
   Nolan, M
   Saunders, E
   Pitluck, S
   Held, B
   Goodwin, L
   Liolios, K
   Ovchinikova, G
   Ivanova, N
   Mavromatis, K
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Jeffries, CD
   Detter, JC
   Han, C
   Tapia, R
   Ngatchou-Djao, OD
   Rohde, M
   Goker, M
   Spring, S
   Sikorski, J
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Klenk, HP
   Kyrpides, NC
AF Pagani, Ioanna
   Chertkov, Olga
   Lapidus, Alla
   Lucas, Susan
   Del Rio, Tijana Glavina
   Tice, Hope
   Copeland, Alex
   Cheng, Jan-Fang
   Nolan, Matt
   Saunders, Elizabeth
   Pitluck, Sam
   Held, Brittany
   Goodwin, Lynne
   Liolios, Konstantinos
   Ovchinikova, Galina
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Jeffries, Cynthia D.
   Detter, John C.
   Han, Cliff
   Tapia, Roxanne
   Ngatchou-Djao, Olivier D.
   Rohde, Manfred
   Goeker, Markus
   Spring, Stefan
   Sikorski, Johannes
   Woyke, Tanja
   Bristow, Jim
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Klenk, Hans-Peter
   Kyrpides, Nikos C.
TI Complete genome sequence of Marivirga tractuosa type strain (H-43(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE mesophilic; chemoorganotrophic; strictly aerobic; Gram-negative; slender
   and flexible rod-shaped; non-sporeforming; motile by gliding;
   Flammeovirgaceae; GEBA
ID BACTERIA; ARCHAEA; CLASSIFICATION; FLEXIBACTERIA; ALGORITHM; DATABASE;
   SYSTEM; GRAPHS
AB Marivirga tractuosa (Lewin 1969) Nedashkovskaya et al. 2010 is the type species of the genus Marivirga, which belongs to the family Flammeovirgaceae. Members of this genus are of interest because of their gliding motility. The species is of interest because representative strains show resistance to several antibiotics, including gentamicin, kanamycin, neomycin, polymixin and streptomycin. This is the first complete genome sequence of a member of the family Flammeovirgaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,511,574 bp long chromosome and the 4,916 bp plasmid with their 3,808 protein-coding and 49 RNA genes are a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Pagani, Ioanna; Chertkov, Olga; Lapidus, Alla; Lucas, Susan; Del Rio, Tijana Glavina; Tice, Hope; Copeland, Alex; Cheng, Jan-Fang; Nolan, Matt; Saunders, Elizabeth; Pitluck, Sam; Held, Brittany; Goodwin, Lynne; Liolios, Konstantinos; Ovchinikova, Galina; Ivanova, Natalia; Mavromatis, Konstantinos; Pati, Amrita; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.; Han, Cliff; Tapia, Roxanne; Woyke, Tanja; Bristow, Jim; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Chertkov, Olga; Saunders, Elizabeth; Held, Brittany; Goodwin, Lynne; Han, Cliff; Tapia, Roxanne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Ngatchou-Djao, Olivier D.; Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Goeker, Markus; Spring, Stefan; Sikorski, Johannes; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Kyrpides, NC (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Pagani, Ioanna/E-7390-2012; Kyrpides, Nikos/A-6305-2014; Hauser,
   Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Spring,
   Stefan/N-6933-2013; Land, Miriam/A-6200-2011
OI Kyrpides, Nikos/0000-0002-6131-0462; Lapidus, Alla/0000-0003-0427-8731;
   Spring, Stefan/0000-0001-6247-0938; Land, Miriam/0000-0001-7102-0031
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; Oak Ridge National Laboratory [DE-AC05-00OR22725]; German
   Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Maren Schroder for
   growing M. tractuosa cultures and Susanne Schneider for DNA extraction
   and quality analysis (both at DSMZ). This work was performed under the
   auspices of the US Department of Energy Office of Science, Biological
   and Environmental Research Program, and by the University of California,
   Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 31
TC 5
Z9 5
U1 1
U2 4
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 154
EP 162
DI 10.4056/sigs.1623941
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300005
PM 21677852
ER

PT J
AU Pukall, R
   Zeytun, A
   Lucas, S
   Lapidus, A
   Hammon, N
   Deshpande, S
   Nolan, M
   Cheng, JF
   Pitluck, S
   Liolios, K
   Pagani, I
   Mikhailova, N
   Ivanova, N
   Mavromatis, K
   Pati, A
   Tapia, R
   Han, C
   Goodwin, L
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Brambilla, EM
   Rohde, M
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
AF Pukall, Rudeiger
   Zeytun, Ahmet
   Lucas, Susan
   Lapidus, Alla
   Hammon, Nancy
   Deshpande, Shweta
   Nolan, Matt
   Cheng, Jan-Fang
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Mikhailova, Natalia
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Pati, Amrita
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Goeker, Markus
   Detter, J. Chris
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
TI Complete genome sequence of Deinococcus maricopensis type strain
   (LB-34(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE aerobic; non-motile; Gram-positive; radiation-resistant; mesophilic;
   chemoorganotrophic; Deinococcaceae; GEBA
ID RADIATION-RESISTANT BACTERIUM; SP-NOV.; GENUS DEINOCOCCUS; RADIOACTIVE
   SITE; DESERT SOIL; SP. NOV.; ARCHAEA; GEOTHERMALIS; RADIODURANS;
   DIVERSITY
AB Deinococcus maricopensis (Rainey and da Costa 2005) is a member of the genus Deinococcus, which is comprised of 44 validly named species and is located within the deeply branching bacterial phylum Deinococcus-Thermus. Strain LB-34(T) was isolated from a soil sample from the Sonoran Desert in Arizona. Various species of the genus Deinococcus are characterized by extreme radiation resistance, with D. maricopensis being resistant in excess of 10 kGy. Even though the genomes of three Deinococcus species, D. radiodurans, D. geothermalis and D. deserti, have already been published, no special physiological characteristic is currently known that is unique to this group. It is therefore of special interest to analyze the genomes of additional species of the genus Deinococcus to better understand how these species adapted to gamma- or UV ionizing-radiation. The 3,498,530 bp long genome of D. maricopensis with its 3,301 protein-coding and 66 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Pukall, Rudeiger; Brambilla, Evelyne-Marie; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Zeytun, Ahmet; Lucas, Susan; Lapidus, Alla; Hammon, Nancy; Deshpande, Shweta; Nolan, Matt; Cheng, Jan-Fang; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Mikhailova, Natalia; Ivanova, Natalia; Mavromatis, Konstantinos; Pati, Amrita; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, J. Chris; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, J. Chris] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Lawrence Livermore Natl Lab, Livermore, CA USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; University of California, Lawrence
   Livermore National Laboratory [DE-AC52-07NA27344]; University of
   California, Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Gabriele
   Gehrich-Schroter (DSMZ) for growing D. maricopensis cultures. This work
   was performed under the auspices of the US Department of Energy Office
   of Science, Biological and Environmental Research Program, and by the
   University of California, Lawrence Berkeley National Laboratory under
   contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory
   under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory
   under contract No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National
   Laboratory under contract DE-AC05-00OR22725, as well as German Research
   Foundation (DFG) INST 599/1-2.
NR 55
TC 7
Z9 7
U1 3
U2 7
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 163
EP 172
DI 10.4056/sigs.1633949
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300006
PM 21677853
ER

PT J
AU Wirth, R
   Chertkov, O
   Held, B
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Ioanna, P
   Ivanova, N
   Mavromatis, K
   Mikhailova, N
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Bilek, Y
   Hader, T
   Rohde, M
   Spring, S
   Sikorski, J
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
AF Wirth, Reinhard
   Chertkov, Olga
   Held, Brittany
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Ioanna, Pagani
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Bilek, Yvonne
   Hader, Thomas
   Rohde, Manfred
   Spring, Stefan
   Sikorski, Johannes
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
TI Complete genome sequence of Desulfurococcus mucosus type strain
   (O7/1(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE hyperthermophile; anaerobic; organotroph; sulfur respiration;
   spheroid-shaped; non-motile; extracellular enzymes; Desulfurococcaceae;
   GEBA
ID ARCHAEBACTERIA; BACTERIA; ARCHAEA; HYBRIDIZATION; ALGORITHM; MOBILIS;
   SYSTEM; GRAPHS
AB Desulfurococcus mucosus Zillig and Stetter 1983 is the type species of the genus Desulfurococcus, which belongs to the crenarchaeal family Desulfurococcaceae. The species is of interest because of its position in the tree of life, its ability for sulfur respiration, and several bio-technologically relevant thermostable and thermoactive extracellular enzymes. This is the third completed genome sequence of a member of the genus Desulfurococcus and already the 8(th) sequence from a member the family Desulfurococcaceae. The 1,314,639 bp long genome with its 1,371 protein-coding and 50 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Spring, Stefan; Sikorski, Johannes; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Chertkov, Olga; Held, Brittany; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ioanna, Pagani; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Wirth, Reinhard; Bilek, Yvonne; Hader, Thomas] Univ Regensburg, Archaeenzentrum, Regensburg, Germany.
   [Chertkov, Olga; Held, Brittany; Tapia, Roxane; Han, Cliff; Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Spring,
   Stefan/N-6933-2013; Land, Miriam/A-6200-2011; Kyrpides,
   Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Spring, Stefan/0000-0001-6247-0938;
   Land, Miriam/0000-0001-7102-0031; Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC0206NA25396];
   UT-Battelle; Oak Ridge National Laboratory [DE-AC05-00OR22725]; German
   Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Olivier D.
   Ngatchou-Djao (HZI) in preparing the manuscript. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC0206NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 47
TC 5
Z9 5
U1 1
U2 5
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 173
EP 182
DI 10.4056/sigs.1644004
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300007
PM 21677854
ER

PT J
AU Temperton, B
   Thomas, S
   Tait, K
   Parry, H
   Emery, M
   Allen, M
   Quinn, J
   MacGrath, J
   Gilbert, J
AF Temperton, Ben
   Thomas, Simon
   Tait, Karen
   Parry, Helen
   Emery, Matt
   Allen, Mike
   Quinn, John
   MacGrath, John
   Gilbert, Jack
TI Permanent draft genome sequence of Vibrio tubiashii strain NCIMB 1337
   (ATCC19106)
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
ID BIVALVE MOLLUSKS; BACTERIA; PATHOGEN; SYSTEM; RNA
AB Vibrio tubiashii NCIMB 1337 is a major and increasingly prevalent pathogen of bivalve mollusks, and shares a close phylogenetic relationship with both V. orientalis and V. coralliilyticus. It is a Gram-negative, curved rod-shaped bacterium, originally isolated from a moribund juvenile oyster, and is both oxidase and catalase positive. It is capable of growth under both aerobic and anaerobic conditions. Here we describe the features of this organism, together with the draft genome and annotation. The genome is 5,353,266 bp long, consisting of two chromosomes, and contains 4,864 protein-coding and 86 RNA genes.
C1 [Temperton, Ben; Thomas, Simon; Tait, Karen; Parry, Helen; Allen, Mike; Gilbert, Jack] Plymouth Marine Lab, Plymouth, Devon, England.
   [Temperton, Ben; Thomas, Simon; Quinn, John; MacGrath, John] Queens Univ Belfast, Sch Biol Sci, Ctr Med Biol, Belfast, Antrim, North Ireland.
   [Emery, Matt] Univ Plymouth, Dept Microbiol, Plymouth PL4 8AA, Devon, England.
   [Gilbert, Jack] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Gilbert, Jack] Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA.
RP Temperton, B (reprint author), Plymouth Marine Lab, Prospect Pl, Plymouth, Devon, England.
RI Allen, Michael (Mike)/C-1248-2011; GenePool, The/D-8812-2012; 
OI Allen, Michael (Mike)/0000-0001-8504-7171; Temperton,
   Ben/0000-0002-3667-8302
FU i-G Peninsula (Prospect Place, the Hoe, Plymouth, Devon, UK)
FX We wish to thank i-G Peninsula (Prospect Place, the Hoe, Plymouth,
   Devon, UK) for providing funding for this project, and NBAF Edinburgh
   for performing the sequencing.
NR 25
TC 11
Z9 11
U1 0
U2 2
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 183
EP 190
DI 10.4056/sigs.1654066
PG 8
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300008
PM 21677855
ER

PT J
AU Gronow, S
   Held, B
   Lucas, S
   Lapidus, A
   Del Rio, TG
   Nolan, M
   Tice, H
   Deshpande, S
   Cheng, JF
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Pati, A
   Tapia, R
   Han, C
   Goodwin, L
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Brambilla, EM
   Rohde, M
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Eisen, JA
AF Gronow, Sabine
   Held, Brittany
   Lucas, Susan
   Lapidus, Alla
   Del Rio, Tijana Glavina
   Nolan, Matt
   Tice, Hope
   Deshpande, Shweta
   Cheng, Jan-Fang
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Pati, Amrita
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Goeker, Markus
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Eisen, Jonathan A.
TI Complete genome sequence of Bacteroides salanitronis type strain
   (BL78(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly anaerobic; non-motile; rod-shaped; Gram-negative; mesophilic;
   cecum; poultry; chemoorganotrophic; Bacteroidaceae; GEBA
ID BACTERIA; ARCHAEA; ALGORITHM; INTESTINE; MUTUALISM; FRAGILIS; DATABASE;
   PROPOSAL; SYSTEM; GRAPHS
AB Bacteroides salanitronis Lan et al. 2006 is a species of the genus Bacteroides, which belongs to the family Bacteroidaceae. The species is of interest because it was isolated from the gut of a chicken and the growing awareness that the anaerobic microflora of the cecum is of benefit for the host and may impact poultry farming. The 4,308,663 bp long genome consists of a 4.24 Mbp chromosome and three plasmids (6 kbp, 19 kbp, 40 kbp) containing 3,737 protein-coding and 101 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Held, Brittany; Lucas, Susan; Lapidus, Alla; Del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Deshpande, Shweta; Cheng, Jan-Fang; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Pati, Amrita; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Hugenholtz, Philip; Kyrpides, Nikos C.; Eisen, Jonathan A.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Gronow, Sabine; Brambilla, Evelyne-Marie; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Held, Brittany; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.] Lawrence Livermore Natl Lab, Livermore, CA USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Eisen, JA (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; Oak Ridge National Laboratory [DE-AC05-00OR22725]; German
   Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Sabine Welnitz
   (DSMZ) for growing cultures of B. salanitronis. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 39
TC 5
Z9 6
U1 2
U2 5
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 191
EP 199
DI 10.4056/sigs.1704212
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300009
PM 21677856
ER

PT J
AU Goker, M
   Gronow, S
   Zeytun, A
   Nolan, M
   Lucas, S
   Lapidus, A
   Hammon, N
   Deshpande, S
   Cheng, JF
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Ovchinikova, G
   Pati, A
   Tapia, R
   Han, C
   Goodwin, L
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Jeffries, CD
   Brambilla, EM
   Rohde, M
   Detter, JC
   Woyke, T
   Bristow, J
   Markowitz, V
   Hugenholtz, P
   Eisen, JA
   Kyrpides, NC
   Klenk, HP
AF Goeker, Markus
   Gronow, Sabine
   Zeytun, Ahmet
   Nolan, Matt
   Lucas, Susan
   Lapidus, Alla
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Pati, Amrita
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Jeffries, Cynthia D.
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Markowitz, Victor
   Hugenholtz, Philip
   Eisen, Jonathan A.
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
TI Complete genome sequence of Odoribacter splanchnicus type strain
   (1651/6(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly anaerobic; non-motile; Gram-negative; opportunistic pathogen;
   mesophilic; chemoorganotrophic; Porphyromonadaceae; GEBA
ID BACTEROIDES-SPLANCHNICUS; GENUS BACTEROIDES; BACTERIA; ARCHAEA;
   PORPHYROMONAS; PHYLOGENY; ALGORITHM; DATABASE; SYSTEM; GRAPHS
AB Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008 is the type species of the genus Odoribacter, which belongs to the family Porphyromonadaceae in the order 'Bacteroidales'. The species is of interest because members of the Odoribacter form an isolated cluster within the Porphyromonadaceae. This is the first completed genome sequence of a member of the genus Odoribacter and the fourth sequence from the family Porphyromonadaceae. The 4,392,288 bp long genome with its 3,672 protein-coding and 74 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Goeker, Markus; Gronow, Sabine; Brambilla, Evelyne-Marie; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Zeytun, Ahmet; Nolan, Matt; Lucas, Susan; Lapidus, Alla; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Hugenholtz, Philip; Eisen, Jonathan A.; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Zeytun, Ahmet; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; Oak Ridge National Laboratory [DE-AC05-00OR22725]; German
   Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Sabine Welnitz
   (DSMZ) for growing O. splanchnicus cultures. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 43
TC 14
Z9 14
U1 2
U2 9
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 200
EP 209
DI 10.4056/sigs.1714269
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300010
PM 21677857
ER

PT J
AU Pati, A
   Zhang, XJ
   Lapidus, A
   Nolan, M
   Lucas, S
   Del Rio, TG
   Tice, H
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Chen, A
   Palaniappan, K
   Hauser, L
   Jeffries, CD
   Brambilla, EM
   Rohl, A
   Mwirichia, R
   Rohde, M
   Tindall, BJ
   Sikorski, J
   Wirth, R
   Goker, M
   Woyke, T
   Detter, JC
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Land, M
AF Pati, Amrita
   Zhang, Xiaojing
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Del Rio, Tijana Glavina
   Tice, Hope
   Cheng, Jan-Fang
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Chen, Amy
   Palaniappan, Krishna
   Hauser, Loren
   Jeffries, Cynthia D.
   Brambilla, Evelyne-Marie
   Roehl, Alina
   Mwirichia, Romano
   Rohde, Manfred
   Tindall, Brian J.
   Sikorski, Johannes
   Wirth, Reinhard
   Goeker, Markus
   Woyke, Tanja
   Detter, John C.
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Land, Miriam
TI Complete genome sequence of Oceanithermus profundus type strain (506(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE microaerophilic; non-motile; Gram-negative; nitrate-reducing; moderate
   thermophilic; neutrophilic; chemolithoheterotrophic; hydrothermal vent;
   Thermaceae; GEBA
ID EXTREMELY RADIATION-RESISTANT; FATTY-ACID-COMPOSITION; SEA HYDROTHERMAL
   VENT; GEN. NOV.; SP. NOV.; THERMOPHILIC BACTERIUM; THERMUS-AQUATICUS;
   MEIOTHERMUS; DEINOCOCCUS; ARCHAEA
AB Oceanithermus profundus Miroshnichenko et al. 2003 is the type species of the genus Oceanithermus, which belongs to the family Thermaceae. The genus currently comprises two species whose members are thermophilic and are able to reduce sulfur compounds and nitrite. The organism is adapted to the salinity of sea water, is able to utilize a broad range of carbohydrates, some proteinaceous substrates, organic acids and alcohols. This is the first completed genome sequence of a member of the genus Oceanithermus and the fourth sequence from the family Thermaceae. The 2,439,291 bp long genome with its 2,391 protein-coding and 54 RNA genes consists of one chromosome and a 135,351 bp long plasmid, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Brambilla, Evelyne-Marie; Tindall, Brian J.; Sikorski, Johannes; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Pati, Amrita; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Hauser, Loren; Jeffries, Cynthia D.; Woyke, Tanja; Detter, John C.; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Land, Miriam] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Zhang, Xiaojing; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Hauser, Loren; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Roehl, Alina; Wirth, Reinhard] Univ Regensburg, Microbiol Archaeenzentrum, Regensburg, Germany.
   [Mwirichia, Romano] Jomo Kenyatta Univ Agr & Technol, Nairobi, Kenya.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; Oak Ridge National Laboratory [DE-AC05-00OR22725]; German
   Research Foundation (DFG) [INST 599/1-2]
FX This work was performed under the auspices of the US Department of
   Energy Office of Science, Biological and Environmental Research Program,
   and by the University of California, Lawrence Berkeley National
   Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore
   National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos
   National Laboratory under contract No. DE-AC02-06NA25396, UT-Battelle
   and Oak Ridge National Laboratory under contract DE-AC05-00OR22725, as
   well as German Research Foundation (DFG) INST 599/1-2.
NR 47
TC 3
Z9 3
U1 2
U2 6
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 210
EP 220
DI 10.4056/sigs.1734292
PG 11
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300011
PM 21677858
ER

PT J
AU Pati, A
   Abt, B
   Teshima, H
   Nolan, M
   Lapidus, A
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Mavromatis, K
   Ovchinikova, G
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Jeffries, CD
   Detter, JC
   Brambilla, EM
   Kannan, KP
   Rohde, M
   Spring, S
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Ivanova, N
AF Pati, Amrita
   Abt, Birte
   Teshima, Hazuki
   Nolan, Matt
   Lapidus, Alla
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Jeffries, Cynthia D.
   Detter, John C.
   Brambilla, Evelyne-Marie
   Kannan, K. Palani
   Rohde, Manfred
   Spring, Stefan
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Ivanova, Natalia
TI Complete genome sequence of Cellulophaga lytica type strain (LIM-21(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE aerobic; motile by gliding; Gram-negative; agarolytic;
   chemoorganotrophic; Flavobacteriaceae; GEBA
ID EMENDED DESCRIPTION; BACTERIAL NAMES; COMB. NOV; CLASSIFICATION;
   ARCHAEA; FLAVOBACTERIACEAE; RECLASSIFICATION; FLEXIBACTERIA; ALGORITHM;
   DATABASE
AB Cellulophaga lytica (Lewin 1969) Johansen et al. 1999 is the type species of the genus Cellulophaga, which belongs to the family Flavobacteriaceae within the phylum 'Bacteroidetes' and was isolated from marine beach mud in Limon, Costa Rica. The species is of biotechnological interest because its members produce a wide range of extracellular enzymes capable of degrading proteins and polysaccharides. After the genome sequence of Cellulophaga algicola this is the second completed genome sequence of a member of the genus Cellulophaga. The 3,765,936 bp long genome with its 3,303 protein-coding and 55 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Abt, Birte; Brambilla, Evelyne-Marie; Kannan, K. Palani; Spring, Stefan; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Pati, Amrita; Teshima, Hazuki; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Ivanova, Natalia] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Teshima, Hazuki; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Kyrpides, Nikos/A-6305-2014; Pagani, Ioanna/E-7390-2012; Hauser,
   Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Spring,
   Stefan/N-6933-2013; Land, Miriam/A-6200-2011
OI Kyrpides, Nikos/0000-0002-6131-0462; Lapidus, Alla/0000-0003-0427-8731;
   Spring, Stefan/0000-0001-6247-0938; Land, Miriam/0000-0001-7102-0031
FU US Department of Energy's Office of Science, Biological and
   Environmental Research; University of California, Lawrence Berkeley
   National Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National
   Laboratory [DE-AC52-07NA27344]; Los Alamos National Laboratory
   [DE-AC02-06NA25396]; UT-Battelle; Oak Ridge National Laboratory
   [DE-AC05-00OR22725]; German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Maren Schroder
   (DSMZ) for growing C. lytica cultures. This work was performed under the
   auspices of the US Department of Energy's Office of Science, Biological
   and Environmental Research Program, and by the University of California,
   Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 46
TC 12
Z9 12
U1 1
U2 5
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 221
EP 232
DI 10.4056/sigs.1774329
PG 12
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300012
PM 21677859
ER

PT J
AU Land, M
   Held, B
   Gronow, S
   Abt, B
   Lucas, S
   Del Rio, TG
   Nolan, M
   Tice, H
   Cheng, JF
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Mikhailova, N
   Pati, A
   Tapia, R
   Han, C
   Goodwin, L
   Chen, A
   Palaniappan, K
   Hauser, L
   Brambilla, EM
   Rohde, M
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Lapidus, A
AF Land, Miriam
   Held, Brittany
   Gronow, Sabine
   Abt, Birte
   Lucas, Susan
   Del Rio, Tijana Glavina
   Nolan, Matt
   Tice, Hope
   Cheng, Jan-Fang
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Pati, Amrita
   Tapia, Roxane
   Han, Cliff
   Goodwin, Lynne
   Chen, Amy
   Palaniappan, Krishna
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Goeker, Markus
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Lapidus, Alla
TI Non-contiguous finished genome sequence of Bacteroides coprosuis type
   strain (PC139(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly anaerobic; non-motile; Gram-negative; mesophilic;
   chemoorganotrophic; Bacteroidaceae; GEBA
ID BACTERIA; ARCHAEA; ALGORITHM; INTESTINE; MUTUALISM; FRAGILIS; DATABASE;
   PROPOSAL; SYSTEM; GRAPHS
AB Bacteroides coprosuis Whitehead et al. 2005 belongs to the genus Bacteroides, which is a member of the family Bacteroidaceae. Members of the genus Bacteroides in general are known as beneficial protectors of animal guts against pathogenic microorganisms, and as contributors to the degradation of complex molecules such as polysaccharides. B. coprosuis itself was isolated from a manure storage pit of a swine facility, but has not yet been found in an animal host. The species is of interest solely because of its isolated phylogenetic location. The genome of B. coprosuis is already the 5(th) sequenced type strain genome from the genus Bacteroides. The 2,991,798 bp long genome with its 2,461 protein-coding and 78 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Land, Miriam; Held, Brittany; Lucas, Susan; Del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Cheng, Jan-Fang; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Chen, Amy; Palaniappan, Krishna; Hauser, Loren; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Lapidus, Alla] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Held, Brittany; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Gronow, Sabine; Abt, Birte; Brambilla, Evelyne-Marie; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia.
RP Lapidus, A (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014; Pagani,
   Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013
OI Land, Miriam/0000-0001-7102-0031; Kyrpides, Nikos/0000-0002-6131-0462;
   Lapidus, Alla/0000-0003-0427-8731
FU US Department of Energy Office of Science, Biological and Environmental
   Research; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle; Oak Ridge National Laboratory [DE-AC05-00OR22725]; German
   Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Sabine Welnitz
   (DSMZ) for growing B. coprosuis cultures. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 43
TC 1
Z9 1
U1 0
U2 3
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 233
EP 243
DI 10.4056/sigs.1784330
PG 11
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300013
PM 21677860
ER

PT J
AU Morrison, N
   Hancock, D
   Hirschman, L
   Dawyndt, P
   Verslyppe, B
   Kyrpides, N
   Kottmann, R
   Yilmaz, P
   Glockner, FO
   Grethe, J
   Booth, T
   Sterk, P
   Nenadic, G
   Field, D
AF Morrison, Norman
   Hancock, David
   Hirschman, Lynette
   Dawyndt, Peter
   Verslyppe, Bert
   Kyrpides, Nikos
   Kottmann, Renzo
   Yilmaz, Pelin
   Gloeckner, Frank Oliver
   Grethe, Jeff
   Booth, Tim
   Sterk, Peter
   Nenadic, Goran
   Field, Dawn
TI Data shopping in an open marketplace: Introducing the Ontogrator web
   application for marking up data using ontologies and browsing using
   facets
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
ID INTEGRATION; INFORMATION; COMMUNITY; RESOURCE
AB In the future, we hope to see an open and thriving data market in which users can find and select data from a wide range of data providers. In such an open access market, data are products that must be packaged accordingly. Increasingly, eCommerce sellers present heterogeneous product lines to buyers using faceted browsing. Using this approach we have developed the Ontogrator platform, which allows for rapid retrieval of data in a way that would be familiar to any online shopper. Using Knowledge Organization Systems (KOS), especially ontologies, Ontogrator uses text mining to mark up data and faceted browsing to help users navigate, query and retrieve data. Ontogrator offers the potential to impact scientific research in two major ways: 1) by significantly improving the retrieval of relevant information; and 2) by significantly reducing the time required to compose standard database queries and assemble information for further research. Here we present a pilot implementation developed in collaboration with the Genomic Standards Consortium (GSC) that includes content from the StrainInfo, GOLD, CAMERA, Silva and Pubmed databases. This implementation demonstrates the power of ontogration and highlights that the usefulness of this approach is fully dependent on both the quality of data and the KOS (ontologies) used. Ideally, the use and further expansion of this collaborative system will help to surface issues associated with the underlying quality of annotation and could lead to a systematic means for accessing integrated data resources.
C1 [Morrison, Norman; Hancock, David; Nenadic, Goran] Univ Manchester, Sch Comp Sci, Manchester, Lancs, England.
   [Morrison, Norman; Hancock, David; Booth, Tim; Field, Dawn] NERC Ctr Ecol & Hydrol, Nat Environm Res Council Environm Bioinformat Ctr, Wallingford, Oxon, England.
   [Hirschman, Lynette] Mitre Corp, Bedford, MA 01730 USA.
   [Dawyndt, Peter; Verslyppe, Bert] Univ Ghent, Dept Appl Math & Comp Sci, B-9000 Ghent, Belgium.
   [Kyrpides, Nikos] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Kottmann, Renzo; Yilmaz, Pelin; Gloeckner, Frank Oliver] Max Planck Inst Marine Microbiol, Microbial Genom Grp, Bremen, Germany.
   [Yilmaz, Pelin] Jacobs Univ Bremen GmbH, Bremen, Germany.
   [Grethe, Jeff] Univ Calif San Diego, La Jolla, CA 92093 USA.
   [Sterk, Peter; Field, Dawn] NERC Ctr Ecol & Hydrol, Mol Evolut & Bioinformat Grp, Wallingford, Oxon, England.
RP Morrison, N (reprint author), Univ Manchester, Sch Comp Sci, Manchester, Lancs, England.
RI Dawyndt, Peter/A-1566-2013; Kyrpides, Nikos/A-6305-2014; 
OI Kyrpides, Nikos/0000-0002-6131-0462; Yilmaz, Pelin/0000-0003-4724-323X;
   Sterk, Peter/0000-0003-1668-7778; Grethe, Jeffrey/0000-0001-5212-7052;
   Dawyndt, Peter/0000-0002-1623-9070; Nenadic, Goran/0000-0003-0795-5363
FU NERC Environmental Bioinformatics Centre (NEBC), UK
FX The work on the Ontogrator Platform presented here was funded by the
   NERC Environmental Bioinformatics Centre (NEBC), UK.
NR 18
TC 1
Z9 1
U1 4
U2 9
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 2
BP 286
EP 292
DI 10.4056/sigs.1344279
PG 7
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 786XD
UT WOS:000292340300017
PM 21677865
ER

PT J
AU Munk, AC
   Copeland, A
   Lucas, S
   Lapidus, A
   Del Rio, TG
   Barry, K
   Detter, JC
   Hammon, N
   Israni, S
   Pitluck, S
   Brettin, T
   Bruce, D
   Han, C
   Tapia, R
   Gilna, P
   Schmutz, J
   Larimer, F
   Land, M
   Kyrpides, NC
   Mavromatis, K
   Richardson, P
   Rohde, M
   Goker, M
   Klenk, HP
   Zhang, YP
   Roberts, GP
   Reslewic, S
   Schwartz, DC
AF Munk, A. Christine
   Copeland, Alex
   Lucas, Susan
   Lapidus, Alla
   Del Rio, Tijana Glavina
   Barry, Kerrie
   Detter, John C.
   Hammon, Nancy
   Israni, Sanjay
   Pitluck, Sam
   Brettin, Thomas
   Bruce, David
   Han, Cliff
   Tapia, Roxanne
   Gilna, Paul
   Schmutz, Jeremy
   Larimer, Frank
   Land, Miriam
   Kyrpides, Nikos C.
   Mavromatis, Konstantinos
   Richardson, Paul
   Rohde, Manfred
   Goeker, Markus
   Klenk, Hans-Peter
   Zhang, Yaoping
   Roberts, Gary P.
   Reslewic, Susan
   Schwartz, David C.
TI Complete genome sequence of Rhodospirillum rubrum type strain (S1(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE facultatively anaerobic; photolithotrophic; mesophile; Gram-negative;
   motile; Rhodospirillaceae; Alphaproteobacteria; DOEM 2002
ID PURPLE NONSULFUR BACTERIA; SYSTEM; GENES; PROTEINS; TOOL;
   IDENTIFICATION; NITROGENASE; ALGORITHM; DATABASE; 16S
AB Rhodospirillum rubrum (Esmarch 1887) Molisch 1907 is the type species of the genus Rhodospirillum, which is the type genus of the family Rhodospirillaceae in the class Alphaproteobacteria. The species is of special interest because it is an anoxygenic phototroph that produces extracellular elemental sulfur (instead of oxygen) while harvesting light. It contains one of the most simple photosynthetic systems currently known, lacking light harvesting complex 2. Strain S1(T) can grow on carbon monoxide as sole energy source. With currently over 1,750 PubMed entries, R. rubrum is one of the most intensively studied microbial species, in particular for physiological and genetic studies. Next to R. centenum strain SW, the genome sequence of strain S1(T) is only the second genome of a member of the genus Rhodospirillum to be published, but the first type strain genome from the genus. The 4,352,825 bp long chromosome and 53,732 bp plasmid with a total of 3,850 protein-coding and 83 RNA genes were sequenced as part of the DOE Joint Genome Institute Program DOEM 2002.
C1 [Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Munk, A. Christine; Detter, John C.; Israni, Sanjay; Han, Cliff; Tapia, Roxanne; Schmutz, Jeremy; Larimer, Frank] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Copeland, Alex; Lucas, Susan; Lapidus, Alla; Del Rio, Tijana Glavina; Barry, Kerrie; Detter, John C.; Hammon, Nancy; Pitluck, Sam; Brettin, Thomas; Bruce, David; Han, Cliff; Tapia, Roxanne; Land, Miriam; Kyrpides, Nikos C.; Mavromatis, Konstantinos; Richardson, Paul] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Gilna, Paul] Univ Calif San Diego, La Jolla, CA 92093 USA.
   [Land, Miriam] Lawrence Livermore Natl Lab, Livermore, CA USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Zhang, Yaoping; Roberts, Gary P.; Reslewic, Susan; Schwartz, David C.] Univ Wisconsin, Madison, WI USA.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Lapidus, Alla/I-4348-2013; Schmutz, Jeremy/N-3173-2013; Land,
   Miriam/A-6200-2011; Gilna, Paul/I-3608-2016; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Schmutz, Jeremy/0000-0001-8062-9172;
   Land, Miriam/0000-0001-7102-0031; Gilna, Paul/0000-0002-6542-0191;
   Kyrpides, Nikos/0000-0002-6131-0462
FU Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231];
   NIGMS [GM65891]
FX We would like to gratefully acknowledge the help of Brian J. Tindall and
   his team (DSMZ) for growing a R. rubrum culture for the EM image. The
   work conducted by the U.S. Department of Energy Joint Genome Institute
   was supported by the Office of Science of the U.S. Department of Energy
   under Contract No. DE-AC02-05CH11231, and was also supported by NIGMS
   grant GM65891 to G. P. R.
NR 45
TC 11
Z9 11
U1 7
U2 17
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 293
EP 302
DI 10.4056/sigs.1804360
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700001
PM 21886856
ER

PT J
AU Huntemann, M
   Lu, MG
   Nolan, M
   Lapidus, A
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Ovchinikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Jeffries, CD
   Detter, JC
   Brambilla, EM
   Rohde, M
   Spring, S
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Mavromatis, K
AF Huntemann, Marcel
   Lu, Megan
   Nolan, Matt
   Lapidus, Alla
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Ovchinikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Jeffries, Cynthia D.
   Detter, John C.
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Spring, Stefan
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Mavromatis, Konstantinos
TI Complete genome sequence of the thermophilic sulfur-reducer Hippea
   maritima type strain (MH2T)
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE anaerobic; motile; rod-shaped; Gram-negative; marine; moderately
   thermophilic; sulfur-reducer; Desulfurellaceae; GEBA
ID SUBMARINE HOT VENTS; ARCHAEA; BACTERIA; ALGORITHM; DATABASE; SYSTEM;
   GRAPHS; NOV.
AB Hippea maritima (Miroshnichenko et al. 1999) is the type species of the genus Hippea, which belongs to the family Desulfurellaceae within the class Deltaproteobacteria. The anaerobic, moderately thermophilic marine sulfur-reducer was first isolated from shallow-water hot vents in Matipur Harbor, Papua New Guinea. H. maritima was of interest for genome sequencing because of its isolated phylogenetic location, as a distant next neighbor of the genus Desulfurella. Strain MH2T is the first type strain from the order Desulfurellales with a completely sequenced genome. The 1,694,430 bp long linear genome with its 1,723 protein-coding and 57 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Brambilla, Evelyne-Marie; Spring, Stefan; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Huntemann, Marcel; Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Lu, Megan; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Ovchinikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Mavromatis, Konstantinos] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Lu, Megan; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Kyrpides, Nikos/A-6305-2014; Spring, Stefan/N-6933-2013; Pagani,
   Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011
OI Kyrpides, Nikos/0000-0002-6131-0462; Spring, Stefan/0000-0001-6247-0938;
   Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Maren Schroder
   (DSMZ) for growing H. maritima cultures. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 28
TC 4
Z9 4
U1 2
U2 5
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 303
EP 311
DI 10.4056/sigs.1814460
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700002
PM 21886857
ER

PT J
AU Ivanova, N
   Sikorski, J
   Chertkov, O
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Huntemann, M
   Liolios, K
   Pagani, I
   Mavromatis, K
   Ovchinikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Kannan, KP
   Rohde, M
   Tindall, BJ
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Lapidus, A
AF Ivanova, Natalia
   Sikorski, Johannes
   Chertkov, Olga
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Huntemann, Marcel
   Liolios, Konstantinos
   Pagani, Ioanna
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Kannan, K. Palani
   Rohde, Manfred
   Tindall, Brian J.
   Goeker, Markus
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Lapidus, Alla
TI Complete genome sequence of the extremely halophilic Halanaerobium
   praevalens type strain (GSL(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly anaerobic; non-motile; Gram-negative; straight rod-shaped;
   halophilic; moderate alkaliphile; mesophilic; chemoorganotroph;
   Halanaerobiaceae; GEBA
ID GREAT-SALT-LAKE; HALOANAEROBIUM-PRAEVALENS; SP-NOV; ANAEROBIC BACTERIUM;
   SEDIMENTS; ARCHAEA; EUBACTERIA; ALGORITHM; DATABASE; PROTEIN
AB Halanaerobium praevalens Zeikus et al. 1984 is the type species of the genus Halanaerobium, which in turn is the type genus of the family Halanaerobiaceae. The species is of interest because it is able to reduce a variety of nitro-substituted aromatic compounds at a high rate, and because of its ability to degrade organic pollutants. The strain is also of interest because it functions as a hydrolytic bacterium, fermenting complex organic matter and producing intermediary metabolites for other trophic groups such as sulfate-reducing and methanogenic bacteria. It is further reported as being involved in carbon removal in the Great Salt Lake, its source of isolation. This is the first completed genome sequence of a representative of the genus Halanaerobium and the second genome sequence from a type strain of the family Halanaerobiaceae. The 2,309,262 bp long genome with its 2,110 protein-coding and 70 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Ivanova, Natalia; Chertkov, Olga; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Lapidus, Alla] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Sikorski, Johannes; Brambilla, Evelyne-Marie; Kannan, K. Palani; Tindall, Brian J.; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Chertkov, Olga; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Lapidus, A (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014; Pagani,
   Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus, Alla/I-4348-2013
OI Land, Miriam/0000-0001-7102-0031; Kyrpides, Nikos/0000-0002-6131-0462;
   Lapidus, Alla/0000-0003-0427-8731
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Olivier D.
   Ngatchou-Djao (HZI) for drafting the manuscript, and Helga Pomrenke
   (DSMZ) for growing H. praevalens cultures. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 48
TC 12
Z9 12
U1 2
U2 13
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 312
EP 321
DI 10.4056/sigs.1824509
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700003
PM 21886858
ER

PT J
AU Anderson, I
   Sikorski, J
   Zeytun, A
   Nolan, M
   Lapidus, A
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Huntemann, M
   Mavromatis, K
   Ovchinikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Ngatchou-Djao, OD
   Rohde, M
   Tindall, BJ
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Klenk, HP
   Kyrpides, NC
AF Anderson, Iain
   Sikorski, Johannes
   Zeytun, Ahmet
   Nolan, Matt
   Lapidus, Alla
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Huntemann, Marcel
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Ngatchou-Djao, Olivier D.
   Rohde, Manfred
   Tindall, Brian J.
   Goeker, Markus
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Klenk, Hans-Peter
   Kyrpides, Nikos C.
TI Complete genome sequence of Nitratifractor salsuginis type strain
   (E9I37-1(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE anaerobic; microaerobic; non-motile; Gram-negative; mesophilic; strictly
   chemolithoautotroph; Nautiliaceae; GEBA
ID EPSILON-PROTEOBACTERIA; SP-NOV.; BACTERIA; ARCHAEA; SYSTEM;
   EPSILONPROTEOBACTERIA; DIVERSITY; ALGORITHM; GRAPHS; 16S
AB Nitratifractor salsuginis Nakagawa et al. 2005 is the type species of the genus Nitratifractor, a member of the family Nautiliaceae. The species is of interest because of its high capacity for nitrate reduction via conversion to N-2 through respiration, which is a key compound in plant nutrition. The strain is also of interest because it represents the first mesophilic and facultatively anaerobic member of the Epsilonproteobacteria reported to grow on molecular hydrogen. This is the first completed genome sequence of a member of the genus Nitratifractor and the second sequence from the family Nautiliaceae. The 2,101,285 bp long genome with its 2,121 protein-coding and 54 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Anderson, Iain; Zeytun, Ahmet; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Sikorski, Johannes; Brambilla, Evelyne-Marie; Tindall, Brian J.; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Zeytun, Ahmet; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Ngatchou-Djao, Olivier D.; Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Kyrpides, NC (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Andrea Schutze
   (DSMZ) for growing N. salsuginis cultures. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 31
TC 4
Z9 4
U1 1
U2 4
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 322
EP 330
DI 10.4056/sigs.1844518
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700004
PM 21886859
ER

PT J
AU Sikorski, J
   Teshima, H
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Huntemann, M
   Mavromatis, K
   Ovchinikova, G
   Pati, A
   Tapia, R
   Han, C
   Goodwin, L
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Ngatchou-Djao, OD
   Rohde, M
   Pukall, R
   Spring, S
   Abt, B
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Markowitz, V
   Hugenholtz, P
   Eisen, JA
   Kyrpides, NC
   Klenk, HP
   Lapidus, A
AF Sikorski, Johannes
   Teshima, Hazuki
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Huntemann, Marcel
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Pati, Amrita
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Ngatchou-Djao, Olivier D.
   Rohde, Manfred
   Pukall, Ruediger
   Spring, Stefan
   Abt, Birte
   Goeker, Markus
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Markowitz, Victor
   Hugenholtz, Philip
   Eisen, Jonathan A.
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Lapidus, Alla
TI Complete genome sequence of Mahella australiensis type strain (50-1
   BONT)
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly anaerobic; motile; spore-forming; Gram-positive; moderately
   thermophilic; chemoorganotrophic; Thermoanaerobacteraceae; GEBA
ID BACTERIA; ARCHAEA; ALGORITHM; SYSTEM; GRAPHS; 16S
AB Mahella australiensis Bonilla Salinas et al. 2004 is the type species of the genus Mahella, which belongs to the family Thermoanaerobacteraceae. The species is of interest because it differs from other known anaerobic spore-forming bacteria in its G+C content, and in certain phenotypic traits, such as carbon source utilization and relationship to temperature. Moreover, it has been discussed that this species might be an indigenous member of petroleum and oil reservoirs. This is the first completed genome sequence of a member of the genus Mahella and the ninth completed type strain genome sequence from the family Thermoanaerobacteraceae. The 3,135,972 bp long genome with its 2,974 protein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Teshima, Hazuki; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Land, Miriam; Hauser, Loren; Pukall, Ruediger; Detter, John C.; Woyke, Tanja; Bristow, James; Hugenholtz, Philip; Eisen, Jonathan A.; Kyrpides, Nikos C.; Lapidus, Alla] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Sikorski, Johannes; Pukall, Ruediger; Spring, Stefan; Abt, Birte; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Teshima, Hazuki; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Ngatchou-Djao, Olivier D.; Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
RP Lapidus, A (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Spring, Stefan/N-6933-2013; Land, Miriam/A-6200-2011; Kyrpides,
   Nikos/A-6305-2014; Pagani, Ioanna/E-7390-2012; Hauser,
   Loren/H-3881-2012; Lapidus, Alla/I-4348-2013
OI Spring, Stefan/0000-0001-6247-0938; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462; Lapidus, Alla/0000-0003-0427-8731
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Katja Steenblock for
   growing M. australiensis cultures, and Susanne Schneider for DNA
   extractions and quality control (both at DSMZ). This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 37
TC 4
Z9 4
U1 1
U2 3
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 331
EP 341
DI 10.4056/sigs.1864526
PG 11
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700005
PM 21886860
ER

PT J
AU Munk, AC
   Lapidus, A
   Lucas, S
   Nolan, M
   Tice, H
   Cheng, JF
   Del Rio, TG
   Goodwin, L
   Pitluck, S
   Liolios, K
   Huntemann, M
   Ivanova, N
   Mavromatis, K
   Mikhailova, N
   Pati, A
   Chen, A
   Palaniappan, K
   Tapia, R
   Han, C
   Land, M
   Hauser, L
   Chang, YJ
   Jeffries, CD
   Brettin, T
   Yasawong, M
   Brambilla, EM
   Rohde, M
   Sikorski, J
   Goker, M
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
AF Munk, A. Christine
   Lapidus, Alla
   Lucas, Susan
   Nolan, Matt
   Tice, Hope
   Cheng, Jan-Fang
   Del Rio, Tijana Glavina
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Huntemann, Marcel
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Tapia, Roxanne
   Han, Cliff
   Land, Miriam
   Hauser, Loren
   Chang, Yun-Juan
   Jeffries, Cynthia D.
   Brettin, Thomas
   Yasawong, Montri
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Sikorski, Johannes
   Goeker, Markus
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
TI Complete genome sequence of Tsukamurella paurometabola type strain (no.
   33(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE obligately aerobic; non-motile; mesophilic; chemoorganotrophic;
   Gram-positive; metachromatic granules; opportunistic pathogen;
   Tsukamurellaceae; GEBA
ID CATHETER-RELATED BACTEREMIA; RHODOCOCCUS-AURANTIACUS; BACTERIAL NAMES;
   CLASSIFICATION; NOMENCLATURE; PROPOSAL; ARCHAEA; SYSTEM; ACTINOBACTERIA;
   INFECTIONS
AB Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988 is the type species of the genus Tsukamurella, which is the type genus to the family Tsukamurellaceae. The species is not only of interest because of its isolated phylogenetic location, but also because it is a human opportunistic pathogen with some strains of the species reported to cause lung infection, lethal meningitis, and necrotizing tenosynovitis. This is the first completed genome sequence of a member of the genus Tsukamurella and the first genome sequence of a member of the family Tsukamurellaceae. The 4,479,724 bp long genome contains a 99,806 bp long plasmid and a total of 4,335 protein-coding and 56 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Brambilla, Evelyne-Marie; Sikorski, Johannes; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Munk, A. Christine; Lapidus, Alla; Lucas, Susan; Nolan, Matt; Tice, Hope; Cheng, Jan-Fang; Del Rio, Tijana Glavina; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Huntemann, Marcel; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Tapia, Roxanne; Han, Cliff; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Brettin, Thomas; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Munk, A. Christine; Goodwin, Lynne; Tapia, Roxanne; Han, Cliff; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Brettin, Thomas] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Yasawong, Montri; Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Kyrpides, Nikos/A-6305-2014; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011
OI Kyrpides, Nikos/0000-0002-6131-0462; Lapidus, Alla/0000-0003-0427-8731;
   Land, Miriam/0000-0001-7102-0031
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-1]; Thailand Research Fund
   Royal Golden Jubilee Ph.D. Program [PHD/0019/2548]
FX We would like to gratefully acknowledge the help of Marlen Jando (DSMZ)
   for growing cultures of T. paurometabola. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under
   Con-tract No. DE-AC52-07NA27344, and Los Alamos National Laboratory
   under contract No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National
   Laboratory under contract DE-AC05-00OR22725, as well as German Research
   Foundation (DFG) INST 599/1-1 and Thailand Research Fund Royal Golden
   Jubilee Ph.D. Program No. PHD/0019/2548 for MY.
NR 41
TC 3
Z9 3
U1 1
U2 7
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 342
EP 351
DI 10.4056/sigs.1894556
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700006
PM 21886861
ER

PT J
AU Daligault, H
   Lapidus, A
   Zeytun, A
   Nolan, M
   Lucas, S
   Del Rio, TG
   Tice, H
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Huntemann, M
   Mavromatis, K
   Mikhailova, N
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Rohde, M
   Verbarg, S
   Goker, M
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Woyke, T
AF Daligault, Hajnalka
   Lapidus, Alla
   Zeytun, Ahmet
   Nolan, Matt
   Lucas, Susan
   Del Rio, Tijana Glavina
   Tice, Hope
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Huntemann, Marcel
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Verbarg, Susanne
   Goeker, Markus
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Woyke, Tanja
TI Complete genome sequence of Haliscomenobacter hydrossis type strain
   (O-T)
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE strictly aerobic; non-motile; Gram-negative; branching; sheathed;
   mesophilic; chemoorganotrophic; "Saprospiraceae"; GEBA
ID FILAMENTOUS BACTERIA; ACTIVATED-SLUDGE; BULKING; ARCHAEA; SYSTEM;
   ALGORITHM; DATABASE; GRAPHS; NAMES; TOOL
AB Haliscomenobacter hydrossis van Veen et al. 1973 is the type species of the genus Haliscomenobacter, which belongs to order "Sphingobacteriales". The species is of interest because of its isolated phylogenetic location in the tree of life, especially the so far genomically uncharted part of it, and because the organism grows in a thin, hardly visible hyaline sheath. Members of the species were isolated from fresh water of lakes and from ditch water. The genome of H. hydrossis is the first completed genome sequence reported from a member of the family "Saprospiraceae". The 8,771,651 bp long genome with its three plasmids of 92 kbp, 144 kbp and 164 kbp length contains 6,848 protein-coding and 60 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Brambilla, Evelyne-Marie; Verbarg, Susanne; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Daligault, Hajnalka; Lapidus, Alla; Zeytun, Ahmet; Nolan, Matt; Lucas, Susan; Del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Land, Miriam; Hauser, Loren; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Woyke, Tanja] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Daligault, Hajnalka; Zeytun, Ahmet; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren; Markowitz, Victor] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-1]
FX We would like to gratefully acknowledge the help of Anja Fruhling (DSMZ)
   for growing H. hydrossis cultures. This work was performed under the
   auspices of the US Department of Energy Office of Science, Biological
   and Environmental Research Program, and by the University of California,
   Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-1.
NR 35
TC 12
Z9 12
U1 1
U2 14
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 352
EP 360
DI 10.4056/sigs.1964579
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700007
PM 21886862
ER

PT J
AU Han, C
   Gronow, S
   Teshima, H
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Zeytun, A
   Tapia, R
   Goodwin, L
   Pitluck, S
   Liolios, K
   Pagani, I
   Ivanova, N
   Mavromatis, K
   Mikhailova, N
   Huntemann, M
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Rohde, M
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Detter, JC
AF Han, Cliff
   Gronow, Sabine
   Teshima, Hazuki
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Zeytun, Ahmed
   Tapia, Roxanne
   Goodwin, Lynne
   Pitluck, Sam
   Liolios, Konstantinos
   Pagani, Ioanna
   Ivanova, Natalia
   Mavromatis, Konstantinos
   Mikhailova, Natalia
   Huntemann, Marcel
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Detter, John C.
TI Complete genome sequence of Treponema succinifaciens type strain
   (6091(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE anaerobic; motile; Gram-negative; mesophilic; chemoorganotrophic;
   Spirochaetaceae; GEBA
ID BACTERIA; ARCHAEA; CLASSIFICATION; ALGORITHM; DATABASE; SYSTEM; GRAPHS;
   TOOL
AB Treponema succinifaciens Cwyk and Canale-Parola 1981 is of interest because this strictly anaerobic, apathogenic member of the genus Treponema oxidizes carbohydrates and couples the Embden-Meyerhof pathway via activity of a pyruvate-formate lyase to the production of acetyl-coenzyme A and formate. This feature separates this species from most other anaerobic spirochetes. The genome of T. succinifaciens 6091(T) is only the second completed and published type strain genome from the genus Treponema in the family Spirochaetaceae. The 2,897,425 bp long genome with one plasmid harbors 2,723 protein-coding and 63 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Gronow, Sabine; Brambilla, Evelyne-Marie; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Han, Cliff; Teshima, Hazuki; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Zeytun, Ahmed; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Huntemann, Marcel; Pati, Amrita; Land, Miriam; Hauser, Loren; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Han, Cliff; Teshima, Hazuki; Zeytun, Ahmed; Tapia, Roxanne; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Pagani, Ioanna/E-7390-2012; Hauser, Loren/H-3881-2012; Lapidus,
   Alla/I-4348-2013; Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014
OI Lapidus, Alla/0000-0003-0427-8731; Land, Miriam/0000-0001-7102-0031;
   Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Sabine Welnitz
   (DSMZ) for growing T. succinifaciens cultures. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 40
TC 12
Z9 12
U1 1
U2 4
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 361
EP 370
DI 10.4056/sigs.1984594
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700008
PM 21886863
ER

PT J
AU Han, C
   Mwirichia, R
   Chertkov, O
   Held, B
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Goodwin, L
   Pitluck, S
   Huntemann, M
   Liolios, K
   Ivanova, N
   Pagani, I
   Mavromatis, K
   Ovchinikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Rohde, M
   Spring, S
   Sikorski, J
   Goker, M
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Detter, JC
AF Han, Cliff
   Mwirichia, Romano
   Chertkov, Olga
   Held, Brittany
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxanne
   Goodwin, Lynne
   Pitluck, Sam
   Huntemann, Marcel
   Liolios, Konstantinos
   Ivanova, Natalia
   Pagani, Ioanna
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Spring, Stefan
   Sikorski, Johannes
   Goeker, Markus
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Detter, John C.
TI Complete genome sequence of Syntrophobotulus glycolicus type strain
   (FlGlyR(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE glycolate-oxidizing; Gram-negative with Gram-positive cell wall
   structure; strictly anaerobic; chemotrophic; mesophilic; non-motile;
   rod-shaped; spore-forming; Peptococcaceae; Clostridiales; GEBA
ID ELECTRON-TRANSPORT; MEMBRANE-VESICLES; BACTERIAL NAMES; GLYCOLLATE;
   ARCHAEA; DRIVEN; ALGORITHM; EXCRETION; HYDROGEN; DATABASE
AB Syntrophobotulus glycolicus Friedrich et al. 1996 is currently the only member of the genus Syntrophobotulus within the family Peptococcaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of tree of life. When grown in pure culture with glyoxylate as carbon source the organism utilizes glyoxylate through fermentative oxidation, whereas, when grown in syntrophic co-culture with homoacetogenic or methanogenic bacteria, it is able to oxidize glycolate to carbon dioxide and hydrogen. No other organic or inorganic carbon source is utilized by S. glycolicus. The subdivision of the family Peptococcaceae into genera does not reflect the natural relationships, particularly regarding the genera most closely related to Syntrophobotulus. Both Desulfotomaculum and Pelotomaculum are paraphyletic assemblages, and the taxonomic classification is in significant conflict with the 16S rRNA data. S. glycolicus is already the ninth member of the family Peptococcaceae with a completely sequenced and publicly available genome. The 3,406,739 bp long genome with its 3,370 protein-coding and 69 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Brambilla, Evelyne-Marie; Spring, Stefan; Sikorski, Johannes; Goeker, Markus; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Han, Cliff; Chertkov, Olga; Held, Brittany; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Ivanova, Natalia; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Detter, John C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Han, Cliff; Chertkov, Olga; Held, Brittany; Tapia, Roxanne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Spring, Stefan/N-6933-2013; Pagani, Ioanna/E-7390-2012; Hauser,
   Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Land, Miriam/A-6200-2011;
   Kyrpides, Nikos/A-6305-2014
OI Spring, Stefan/0000-0001-6247-0938; Lapidus, Alla/0000-0003-0427-8731;
   Land, Miriam/0000-0001-7102-0031; Kyrpides, Nikos/0000-0002-6131-0462
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Maren Schroder
   (DSMZ) for growing S. glycolicus cultures. This work was performed under
   the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 46
TC 1
Z9 2
U1 1
U2 3
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 371
EP 380
DI 10.4056/sigs.2004684
PG 10
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700009
PM 21886864
ER

PT J
AU Anderson, I
   Goker, M
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Huntemann, M
   Liolios, K
   Ivanova, N
   Pagani, I
   Mavromatis, K
   Ovchinikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Huber, H
   Yasawong, M
   Rohde, M
   Spring, S
   Abt, B
   Sikorski, J
   Wirth, R
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
   Lapidus, A
AF Anderson, Iain
   Goeker, Markus
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Huntemann, Marcel
   Liolios, Konstantinos
   Ivanova, Natalia
   Pagani, Ioanna
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Huber, Harald
   Yasawong, Montri
   Rohde, Manfred
   Spring, Stefan
   Abt, Birte
   Sikorski, Johannes
   Wirth, Reinhard
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
   Lapidus, Alla
TI Complete genome sequence of the hyperthermophilic chemolithoautotroph
   Pyrolobus fumarii type strain (1A(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE hyperthermophile; chemolithoautotroph; facultative microaerophilic;
   non-motile; hydrothermal solfataric vents; black smoker; Pyrodictiaceae;
   GEBA
ID UPPER TEMPERATURE LIMIT; TRANSFER-RNA; IN-VITRO; ARCHAEA; BACTERIA;
   ALGORITHM; DATABASE; SYSTEM; GRAPHS; LIFE
AB Pyrolobus fumarii Blochl et al. 1997 is the type species of the genus Pyrolobus, which belongs to the crenarchaeal family Pyrodictiaceae. The species is a facultatively microaerophilic non-motile crenarchaeon. It is of interest because of its isolated phylogenetic location in the tree of life and because it is a hyperthermophilic chemolithoautotroph known as the primary producer of organic matter at deep-sea hydrothermal vents. P. fumarii exhibits currently the highest optimal growth temperature of all life forms on earth (106 degrees C). This is the first completed genome sequence of a member of the genus Pyrolobus to be published and only the second genome sequence from a member of the family Pyrodictiaceae. Although Diversa Corporation announced the completion of sequencing of the P. fumarii genome on September 25, 2001, this sequence was never released to the public. The 1,843,267 bp long genome with its 1,986 protein-coding and 52 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Anderson, Iain; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Ivanova, Natalia; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.; Lapidus, Alla] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Goeker, Markus; Brambilla, Evelyne-Marie; Spring, Stefan; Abt, Birte; Sikorski, Johannes; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Huber, Harald; Wirth, Reinhard] Univ Regensburg, Microbiol Archaeenzentrum, Regensburg, Germany.
   [Yasawong, Montri; Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Lapidus, A (reprint author), DOE Joint Genome Inst, Walnut Creek, CA USA.
RI Land, Miriam/A-6200-2011; Kyrpides, Nikos/A-6305-2014; Spring,
   Stefan/N-6933-2013; Pagani, Ioanna/E-7390-2012; Hauser,
   Loren/H-3881-2012; Lapidus, Alla/I-4348-2013
OI Land, Miriam/0000-0001-7102-0031; Kyrpides, Nikos/0000-0002-6131-0462;
   Spring, Stefan/0000-0001-6247-0938; Lapidus, Alla/0000-0003-0427-8731
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle, and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-1, SI 1352/1-2]; Thailand
   Research Fund Royal Golden Jubilee Ph.D. Program [PHD/0019/2548']
FX This work was performed under the auspices of the US Department of
   Energy Office of Science, Biological and Environmental Research Program,
   and by the University of California, Lawrence Berkeley National
   Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore
   National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos
   National Laboratory under contract No. DE-AC02-06NA25396, UT-Battelle,
   and Oak Ridge National Laboratory under contract DE-AC05-00OR22725, as
   well as German Research Foundation (DFG) INST 599/1-1 and SI 1352/1-2
   and Thailand Research Fund Royal Golden Jubilee Ph.D. Program No.
   PHD/0019/2548' for MY.
NR 52
TC 6
Z9 6
U1 8
U2 27
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 381
EP 392
DI 10.4056/sigs.2014648
PG 12
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700010
PM 21886865
ER

PT J
AU Goker, M
   Teshima, H
   Lapidus, A
   Nolan, M
   Lucas, S
   Hammon, N
   Deshpande, S
   Cheng, JF
   Tapia, R
   Han, C
   Goodwin, L
   Pitluck, S
   Huntemann, M
   Liolios, K
   Ivanova, N
   Pagani, I
   Mavromatis, K
   Ovchinikova, G
   Pati, A
   Chen, A
   Palaniappan, K
   Land, M
   Hauser, L
   Brambilla, EM
   Rohde, M
   Spring, S
   Detter, JC
   Woyke, T
   Bristow, J
   Eisen, JA
   Markowitz, V
   Hugenholtz, P
   Kyrpides, NC
   Klenk, HP
AF Goeker, Markus
   Teshima, Hazuki
   Lapidus, Alla
   Nolan, Matt
   Lucas, Susan
   Hammon, Nancy
   Deshpande, Shweta
   Cheng, Jan-Fang
   Tapia, Roxanne
   Han, Cliff
   Goodwin, Lynne
   Pitluck, Sam
   Huntemann, Marcel
   Liolios, Konstantinos
   Ivanova, Natalia
   Pagani, Ioanna
   Mavromatis, Konstantinos
   Ovchinikova, Galina
   Pati, Amrita
   Chen, Amy
   Palaniappan, Krishna
   Land, Miriam
   Hauser, Loren
   Brambilla, Evelyne-Marie
   Rohde, Manfred
   Spring, Stefan
   Detter, John C.
   Woyke, Tanja
   Bristow, James
   Eisen, Jonathan A.
   Markowitz, Victor
   Hugenholtz, Philip
   Kyrpides, Nikos C.
   Klenk, Hans-Peter
TI Complete genome sequence of the acetate-degrading sulfate reducer
   Desulfobacca acetoxidans type strain (ASRB2(T))
SO STANDARDS IN GENOMIC SCIENCES
LA English
DT Article
DE anaerobic; mesophile; organoheterotroph; non-motile; sulfate-reducing;
   sludge bed reactor; Syntrophaceae; GEBA
ID BACTERIA; ARCHAEA; ALGORITHM; DATABASE; SYSTEM; GRAPHS; TOOL
AB Desulfobacca acetoxidans Elferink et al. 1999 is the type species of the genus Desulfobacca, which belongs to the family Syntrophaceae in the class Deltaproteobacteria. The species was first observed in a study on the competition of sulfate-reducers and acetoclastic methanogens for acetate in sludge. D. acetoxidans is considered to be the most abundant acetate-degrading sulfate reducer in sludge. It is of interest due to its isolated phylogenetic location in the 16S rRNA-based tree of life. This is the second completed genome sequence of a member of the family Syntrophaceae to be published and only the third genome sequence from a member of the order Syntrophobacterales. The 3,282,536 bp long genome with its 2,969 protein-coding and 54 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
C1 [Goeker, Markus; Brambilla, Evelyne-Marie; Spring, Stefan; Klenk, Hans-Peter] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
   [Teshima, Hazuki; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Ivanova, Natalia; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Land, Miriam; Hauser, Loren; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Hugenholtz, Philip; Kyrpides, Nikos C.] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Teshima, Hazuki; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Detter, John C.] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA.
   [Chen, Amy; Palaniappan, Krishna; Markowitz, Victor] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA.
   [Land, Miriam; Hauser, Loren] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Rohde, Manfred] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany.
   [Eisen, Jonathan A.] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA.
   [Hugenholtz, Philip] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia.
RP Klenk, HP (reprint author), DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany.
RI Kyrpides, Nikos/A-6305-2014; Pagani, Ioanna/E-7390-2012; Hauser,
   Loren/H-3881-2012; Lapidus, Alla/I-4348-2013; Land, Miriam/A-6200-2011;
   Spring, Stefan/N-6933-2013
OI Kyrpides, Nikos/0000-0002-6131-0462; Lapidus, Alla/0000-0003-0427-8731;
   Land, Miriam/0000-0001-7102-0031; Spring, Stefan/0000-0001-6247-0938
FU US Department of Energy Office of Science, Biological and Environmental
   Research Program; University of California, Lawrence Berkeley National
   Laboratory [DE-AC02-05CH11231]; Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Los Alamos National Laboratory [DE-AC02-06NA25396];
   UT-Battelle, and Oak Ridge National Laboratory [DE-AC05-00OR22725];
   German Research Foundation (DFG) [INST 599/1-2]
FX We would like to gratefully acknowledge the help of Esther Schuler
   (DSMZ) for growing D. acetoxidans cultures. This work was performed
   under the auspices of the US Department of Energy Office of Science,
   Biological and Environmental Research Program, and by the University of
   California, Lawrence Berkeley National Laboratory under contract No.
   DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract
   No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract
   No. DE-AC02-06NA25396, UT-Battelle, and Oak Ridge National Laboratory
   under contract DE-AC05-00OR22725, as well as German Research Foundation
   (DFG) INST 599/1-2.
NR 36
TC 6
Z9 6
U1 1
U2 4
PU GENOMIC STAND CONSORT
PI EAST LANSING
PA MICHIGAN STATE UNIV, GEEO GARRITY, DEPT MICROBIOL, 6162 BIOMED & PHYS
   SCI BLDG, EAST LANSING, MI 48824 USA
SN 1944-3277
J9 STAND GENOMIC SCI
JI Stand. Genomic Sci.
PY 2011
VL 4
IS 3
BP 393
EP 401
DI 10.4056/sigs.2064705
PG 9
WC Genetics & Heredity; Microbiology
SC Genetics & Heredity; Microbiology
GA 874GP
UT WOS:000298943700011
PM 21886866
ER

PT S
AU Valyaev, AN
   Passell, HD
   Solodukhin, VP
   Stepanets, OV
   Aleksanyan, GM
   Petrov, VA
   Valyaeva, AA
AF Valyaev, A. N.
   Passell, H. D.
   Solodukhin, V. P.
   Stepanets, O. V.
   Aleksanyan, G. M.
   Petrov, V. A.
   Valyaeva, A. A.
BE Avagyan, A
   Barry, DL
   Coldewey, WG
   Reimer, DWG
TI Geochemical and Radiological Risks in the Most Dangerous Regions of
   Central Asia and Caucasus
SO STIMULUS FOR HUMAN AND SOCIETAL DYNAMICS IN THE PREVENTION OF
   CATASTROPHES
SE Nato Science for Peace and Security Series E-Human and Societal Dynamics
LA English
DT Proceedings Paper
CT NATO Advanced Research Workshop on Stimulus for Human and Social
   Dynamics in the Prevention of Catastrophes
CY OCT 05-08, 2010
CL Yerevan, ARMENIA
SP NATO
DE Water bodies; mountainous areas; pollution; risk; monitoring;
   prediction; prevention; safety
AB Many regions of Central Asia and Caucasus are characterised as zones of great global geochemical and radiological risks. This is connected with intense natural and man-made impacts, as well as the political and economic situation. For the first group of impacts we address mountainous areas with high seismic levels, large lakes and rivers with powerful hydroelectric stations, sizeable reservoirs and large high dams, high degrees of industrial activity that increases probabilities for man-induced and natural catastrophes with irreversible high levels of radioactive, toxic and other pollutants of large areas such as the Black, Caspian and Kara Seas, and their river basins. The second group of impacts relate to the disbanding of the USSR and the creation of new independent states with additional international frictions, which results in inadequate or totally absent environmental monitoring of, especially, trans-boundary areas. The proximity of these regions to zones of dormant or active conflicts promote situations with great opportunities for performing deliberate acts of terrorism using explosives, and area also able to cause man-induced catastrophes and stimulate natural calamities. Presented here is our approach to resolving the noted actual problems, and its implementation will promote the realization of the concept of substantial development and decreasing political stress for all countries located on the continent.
C1 [Valyaev, A. N.] Russian Acad Sci, Nucl Safety Inst, Moscow, Russia.
   [Passell, H. D.] Sandia Natl Labs, Cooperat Monitoring Ctr, Geosci & Environm Ctr, Livermore, CA 94550 USA.
   [Solodukhin, V. P.] Natl Acad Sci, Inst Nucl Phys, Alma Ata, Kazakhstan.
   [Stepanets, O. V.] Vernadsky Inst Geochem & Analyt Chem RAS, Moscow, Russia.
   [Aleksanyan, G. M.] Yerevan State Univ, Yerevan 375049, Armenia.
   [Petrov, V. A.] Tech Univ, Ust Kamenogorsk, Kazakhstan.
   [Valyaeva, A. A.] Tambov State Univ, Tambov, Russia.
RP Valyaev, AN (reprint author), Russian Acad Sci, Nucl Safety Inst, 52 B-6 Tulskaya Str, Moscow, Russia.
NR 12
TC 0
Z9 0
U1 2
U2 2
PU IOS PRESS
PI AMSTERDAM
PA NIEUWE HEMWEG 6B, 1013 BG AMSTERDAM, NETHERLANDS
SN 1879-8268
BN 978-1-60750-738-3; 978-1-60750-737-6
J9 NATO SCI PEACE SEC
PY 2011
VL 80
BP 194
EP 209
DI 10.3233/978-1-60750-738-3-194
PG 16
WC Environmental Studies; Political Science; Social Sciences,
   Interdisciplinary
SC Environmental Sciences & Ecology; Government & Law; Social Sciences -
   Other Topics
GA BC2UG
UT WOS:000351352000020
ER

PT B
AU Brodsky, SJ
   de Teramond, G
   Deur, A
AF Brodsky, Stanley J.
   de Teramond, Guy
   Deur, Alexandre
BE Fukaya, H
   Harada, M
   Tanabashi, M
   Yamawaki, K
TI AdS/QCD, Light-Front Holography, and the Nonperturbative Running
   Coupling
SO STRONG COUPLING GAUGE THEORIES IN LHC ERA
LA English
DT Proceedings Paper
CT International Workshop on Strong Coupling Gauge Theories in the LHC Era
   (SCGT 09)
CY DEC 08-11, 2009
CL Nagoya Univ, Nagoya, JAPAN
HO Nagoya Univ
DE AdS/CFT correspondence; AdS/QCD; light-front QCD; light-front
   quantization; nonperturbative QCD coupling
ID DEEP-INELASTIC SCATTERING; QUANTUM CHROMODYNAMICS; SPIN ASYMMETRIES;
   MAGNETIC-MOMENTS; SUM-RULE; QCD; NUCLEON; BARYONS; DISTRIBUTIONS;
   CONSTANT
AB The combination of Anti-de Sitter space (AdS) methods with light-front (LF) holography provides a remarkably accurate first approximation for the spectra and wavefunctions of meson and baryon light-quark bound states. The resulting bound-state Hamiltonian equation of motion in QCD leads to relativistic light-front wave equations in terms of an invariant impact variable zeta which measures the separation of the quark and gluonic constituents within the hadron at equal light-front time. These equations of motion in physical space-time are equivalent to the equations of motion which describe the propagation of spin-J modes in anti de Sitter (AdS) space. The eigenvalues give the hadronic spectrum, and the eigenmodes represent the probability distributions of the hadronic constituents at a given scale. A positive-sign confining dilaton background modifying AdS space gives a very good account of meson and baryon spectroscopy and form factors. The light-front holographic mapping of this model also leads to a non-perturbative effective coupling alpha(S) (ADS)(Q(2)) which agrees with the effective charge defined by the Bjorken sum rule and lattice simulations. It displays a transition from perturbative to nonperturbative conformal regimes at a momentum scale similar to 1 GeV. The resulting beta-function appears to capture the essential characteristics of the full beta-function of QCD, thus giving further support to the application of the gauge/gravity duality to the confining dynamics of strongly coupled QCD.
C1 [Brodsky, Stanley J.] Stanford Univ, SLAC Natl Accelerator Lab, Stanford, CA 94309 USA.
   [de Teramond, Guy] Univ Costa Rica, San Jose, Costa Rica.
   [Deur, Alexandre] Thomas Jefferson Natl Accelerator Facil, Newport News, VA 23606 USA.
RP Brodsky, SJ (reprint author), Stanford Univ, SLAC Natl Accelerator Lab, Stanford, CA 94309 USA.
EM sjbth@slac.stanford.edu; gdt@asterix.crnet.cr; deurpam@jlab.org
FU Department of Energy [DE ACO2-76SF00515, DE-AC05-84ER40150,
   SLAC-PUB-13998, JLAB-PHY10-1130]
FX Presented by SJB at SCGT09, 2009 International Workshop on Strong
   Coupling Gauge Theories in the LHC Era, Nagoya, December 8-11, 2009. We
   thank Volker Burkert, John Cornwall, Sadataka Furui, Philipp Hagler,
   Wolfgang Korsch, G. Peter Lepage, Takemichi Okui, Joannis Papavassiliou
   and Anatoly Radyushkin for helpful comments. This research was supported
   by the Department of Energy contracts DE ACO2-76SF00515 and
   DE-AC05-84ER40150. SLAC-PUB-13998. JLAB-PHY10-1130.
NR 73
TC 0
Z9 0
U1 0
U2 0
PU WORLD SCIENTIFIC PUBL CO PTE LTD
PI SINGAPORE
PA PO BOX 128 FARRER RD, SINGAPORE 9128, SINGAPORE
BN 978-981-4329-51-4
PY 2011
BP 1
EP 16
PG 16
WC Physics, Particles & Fields
SC Physics
GA BH0BL
UT WOS:000394555200001
ER

PT B
AU Sinclair, DK
   Kogut, JB
AF Sinclair, D. K.
   Kogut, J. B.
BE Fukaya, H
   Harada, M
   Tanabashi, M
   Yamawaki, K
TI Lattice Gauge Theory and (Quasi)-Conformal Technicolor
SO STRONG COUPLING GAUGE THEORIES IN LHC ERA
LA English
DT Proceedings Paper
CT International Workshop on Strong Coupling Gauge Theories in the LHC Era
   (SCGT 09)
CY DEC 08-11, 2009
CL Nagoya Univ, Nagoya, JAPAN
HO Nagoya Univ
DE Lattice gauge theory; Walking Technicolor
ID SYMMETRY-BREAKING; QUARK FLAVORS; QCD; HYPERCOLOR; FERMIONS; NUMBER;
   SCALE
AB QCD with 2 flavours of massless colour-sextet quarks is studied as a theory which might exhibit a range of scales over which the running coupling constant evolves very slowly (walks). We simulate lattice QCD with 2 flavours of sextet staggered quarks to determine whether walks, or if it has an infrared fixed point, making it a conformal field theory. Our initial simulations are performed at finite temperatures T = 1/N(t)a (N-t = 4 and N-t = 6), which allows us to identify the scales of confinement and chiral-symmetry breaking from the deconfinement and chiral-symmetry restoring transitions. Unlike QCD with fundamental quarks, these two transitions appear to be well-separated. The change in coupling constants at these transitions between the two different temporal extents N-t, is consistent with these being finite temperature transitions for an asymptotically free theory, which favours walking behaviour. In the deconfined phase, the Wilson Line shows a 3-state signal. Between the confinement and chiral transitions, there is an additional transition where the states with Wilson Lines oriented in the directions of the complex cube roots of unity disorder into a state with a negative Wilson Line.
C1 [Sinclair, D. K.] Argonne Natl Lab, HEP Div, 9700 South Cass Ave, Argonne, IL 60439 USA.
   [Kogut, J. B.] US DOE, Div High Energy Phys, Washington, DC 20585 USA.
   [Kogut, J. B.] Univ Maryland, Dept Phys TQHN, College Pk, MD 20742 USA.
RP Sinclair, DK (reprint author), Argonne Natl Lab, HEP Div, 9700 South Cass Ave, Argonne, IL 60439 USA.
EM dks@hep.anl.gov; jbkogut@umd.edu
FU U.S. Department of Energy, Division of High Energy Physics
   [DE-AC02-06CH11357]; Argonne/University of Chicago Joint Theory
   Institute; NSF [PHY03-04252]
FX DKS is supported in part by the U.S. Department of Energy, Division of
   High Energy Physics, Contract DE-AC02-06CH11357, and in part by the
   Argonne/University of Chicago Joint Theory Institute. JBK is supported
   in part by NSF grant NSF PHY03-04252. These simulations were performed
   on the Cray XT4, Franklin at NERSC under an ERCAP allocation, and on the
   Cray XT5, Kraken at NICS under an LRAC/TRAC allocation.
NR 39
TC 0
Z9 0
U1 0
U2 0
PU WORLD SCIENTIFIC PUBL CO PTE LTD
PI SINGAPORE
PA PO BOX 128 FARRER RD, SINGAPORE 9128, SINGAPORE
BN 978-981-4329-51-4
PY 2011
BP 283
EP 289
PG 7
WC Physics, Particles & Fields
SC Physics
GA BH0BL
UT WOS:000394555200030
ER

PT B
AU Graesser, ML
   Kitano, R
   Kurachi, M
AF Graesser, Michael L.
   Kitano, Ryuichiro
   Kurachi, Masafumi
BE Fukaya, H
   Harada, M
   Tanabashi, M
   Yamawaki, K
TI Higgsinoless Supersymmetry and Hidden Gravity
SO STRONG COUPLING GAUGE THEORIES IN LHC ERA
LA English
DT Proceedings Paper
CT International Workshop on Strong Coupling Gauge Theories in the LHC Era
   (SCGT 09)
CY DEC 08-11, 2009
CL Nagoya Univ, Nagoya, JAPAN
HO Nagoya Univ
ID ELECTROWEAK SYMMETRY-BREAKING; NON-LINEAR REALIZATIONS; LOCAL SYMMETRY;
   NONLINEAR REALIZATION; BROKEN SUPERSYMMETRY; GAUGE BOSON; DIMENSIONS;
   PHENOMENOLOGY; SUPERGRAVITY; LAGRANGIANS
AB We present a simple formulation of non-linear supersymmetry where superfields and partnerless fields can coexist. Using this formalism, we propose a supersymmetric Standard Model without the Higgsino as an effective model for the TeV-scale supersymmetry breaking scenario. We also consider an application of the Hidden Local Symmetry in non-linear supersymmetry, where we can naturally incorporate a spin-two resonance into the theory in a manifestly supersymmetric way. Possible signatures at the LHC experiments are discussed.
C1 [Graesser, Michael L.] Los Alamos Natl Lab, Theoret Div T2, Los Alamos, NM 87545 USA.
   [Kitano, Ryuichiro; Kurachi, Masafumi] Tohoku Univ, Dept Phys, Sendai, Miyagi 9808578, Japan.
RP Graesser, ML (reprint author), Los Alamos Natl Lab, Theoret Div T2, Los Alamos, NM 87545 USA.
FU U.S. Department of Energy at Los Alamos National Laboratory
   [DE-AC52-06NA25396]; JSPS [21840006]
FX RK thanks the organizers of the SCGT 2009 workshop. He especially thanks
   Prof. Koichi Yamawaki for his hospitality in Nagoya. The work of MG is
   supported by the U.S. Department of Energy at Los Alamos National
   Laboratory under Contract No. DE-AC52-06NA25396. The work of RK is
   supported in part by the Grant-in-Aid for Scientific Research 21840006
   of JSPS.
NR 58
TC 0
Z9 0
U1 0
U2 0
PU WORLD SCIENTIFIC PUBL CO PTE LTD
PI SINGAPORE
PA PO BOX 128 FARRER RD, SINGAPORE 9128, SINGAPORE
BN 978-981-4329-51-4
PY 2011
BP 311
EP 323
PG 13
WC Physics, Particles & Fields
SC Physics
GA BH0BL
UT WOS:000394555200034
ER

PT J
AU Stull, CJ
   Taylor, SG
   Wren, J
   Mascarenus, DL
   Farrar, CR
AF Stull, C. J.
   Taylor, S. G.
   Wren, J.
   Mascarenus, D. L.
   Farrar, C. R.
BE Chang, FK
TI Real-Time Condition Assessment of RAPTOR Telescope Systems
SO STRUCTURAL HEALTH MONITORING 2011: CONDITION-BASED MAINTENANCE AND
   INTELLIGENT STRUCTURES, VOL 1
SE Structural Health Monitoring
LA English
DT Proceedings Paper
CT 8th International Workshop on Structural Health Monitoring
CY SEP 13-15, 2011
CL Stanford Univ, Stanford, CA
SP AF Off Sci Res, Army Res Off, Natl Sci Fdn, Off Naval Res
HO Stanford Univ
ID SKY
AB The RAPid Telescopes for Optical Response (RAPTOR) observatory network consists of several astronomical telescopes designed to search for astrophysical transients called gamma-ray bursts (GRBs). Although intrinsically bright, GRBs are difficult to detect due to their short durations, and as such, the RAPTOR telescopes must operate autonomously, at high duty-cycles and in peak operating condition. To facilitate more efficient planning of maintenance schedules, a recent research effort at Los Alamos National Laboratory (LANL) has focused on developing a structural health monitoring (SHM) system for these telescopes. This paper summarizes the results from this effort. The damage scenario of concern, namely damage to the telescope drive mechanism, is first presented. Next, a damage detection algorithm is developed with LANL's new publically available software package, SHMTools and the results of this process are discussed in detail. The paper then concludes with a summary of future planned refinements of the RAPTOR SHM system.
C1 [Stull, C. J.; Taylor, S. G.; Wren, J.; Mascarenus, D. L.; Farrar, C. R.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Stull, CJ (reprint author), Los Alamos Natl Lab, POB 1663, Los Alamos, NM 87545 USA.
RI Farrar, Charles/C-6954-2012; Taylor, Stuart/B-1347-2013
NR 13
TC 0
Z9 0
U1 0
U2 1
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-053-2
J9 STRUCT HLTH MONIT
PY 2011
BP 501
EP 508
PG 8
WC Endocrinology & Metabolism; Instruments & Instrumentation
SC Endocrinology & Metabolism; Instruments & Instrumentation
GA BXY69
UT WOS:000297634100060
ER

PT J
AU Mascarenas, D
   Hush, D
   Theiler, J
   Farrar, C
AF Mascarenas, D.
   Hush, D.
   Theiler, J.
   Farrar, C.
BE Chang, FK
TI The Application of Compressed Sensing to Detecting Damage in Structures
SO STRUCTURAL HEALTH MONITORING 2011: CONDITION-BASED MAINTENANCE AND
   INTELLIGENT STRUCTURES, VOL 1
SE Structural Health Monitoring
LA English
DT Proceedings Paper
CT 8th International Workshop on Structural Health Monitoring
CY SEP 13-15, 2011
CL Stanford Univ, Stanford, CA
SP AF Off Sci Res, Army Res Off, Natl Sci Fdn, Off Naval Res
HO Stanford Univ
AB One of the principal challenges facing the structural health monitoring (SHM) community is taking large, heterogeneous sets of data collected from sensors, and extracting information that allows the estimation of the remaining service life of a structure. Another important challenge is to collect relevant data from a structure in a manner that is cost effective, and respects the size, weight, cost, energy consumption, and bandwidth limitations placed on the system. In this work we explore the suitability of compressed sensing to address both challenges.
   In this work a digital version of a compressed sensor is implemented on-board a microcontroller similar to those used in embedded SHM sensor nodes. The sensor node is tested in a surrogate SHM application requiring acceleration measurements. Currently the prototype compressed sensor is capable of collecting compressed coefficients from measurements and sending them to an off-board processor for reconstruction using L1 norm minimization. A compressed version of the matched filter known as the smashed filter, has also been implemented on-board the sensor node, and its suitability for detecting structural damage will be discussed.
C1 [Mascarenas, D.; Hush, D.; Theiler, J.; Farrar, C.] Los Alamos Natl Lab, Los Alamos, NM 87544 USA.
RP Mascarenas, D (reprint author), Los Alamos Natl Lab, POB 1663,MS T001, Los Alamos, NM 87544 USA.
RI Farrar, Charles/C-6954-2012
NR 7
TC 0
Z9 0
U1 0
U2 1
PU DESTECH PUBLICATIONS, INC
PI LANCASTER
PA 439 DUKE STREET, LANCASTER, PA 17602-4967 USA
BN 978-1-60595-053-2
J9 STRUCT HLTH MONIT
PY 2011
BP 1013
EP 1020
PG 8
WC Endocrinology & Metabolism; Instruments & Instrumentation
SC Endocrinology & Metabolism; Instruments & Instrumentation
GA BXY69
UT WOS:000297634100123
ER

PT J
AU Dalton, A
   Asal, V
AF Dalton, Angela
   Asal, Victor
TI Is It Ideology or Desperation: Why Do Organizations Deploy Women in
   Violent Terrorist Attacks?
SO STUDIES IN CONFLICT & TERRORISM
LA English
DT Article
ID MILITARY; GENDER
AB Why do some terrorist organizations deploy women on the front lines and in violent attacks? This study explores the social conditions, economic factors, and organizational characteristics that might explain women's participation in violent terrorist activity. With a new data set of 395 terrorist organizations, women's participation in terrorist attacks was quantified and coded. The logistic regression analysis results suggest that women's educational attainment, social rights, terrorist organization's age and size, and the level of a country's economic development are important predictors of the deployment of women in terrorist violence while a terrorist group's ideological or religious orientation and the level of democracy do not significantly influence the likelihood of women's participation.
C1 [Dalton, Angela] Pacific NW Natl Lab, Fundamental & Computat Sci Directorate, Richland, WA 99352 USA.
   [Asal, Victor] SUNY Albany, Dept Polit Sci, Nelson A Rockefeller Coll Publ Affairs & Policy, Albany, NY 12222 USA.
RP Dalton, A (reprint author), Pacific NW Natl Lab, Fundamental & Computat Sci Directorate, 902 Battelle Blvd,MSIN K7-90, Richland, WA 99352 USA.
EM angela.dalton@pnnl.gov
NR 58
TC 3
Z9 3
U1 3
U2 10
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 1057-610X
J9 STUD CONFL TERROR
JI Stud. Confl. Terror.
PY 2011
VL 34
IS 10
BP 802
EP 819
DI 10.1080/1057610X.2011.604833
PG 18
WC International Relations; Political Science
SC International Relations; Government & Law
GA 887XB
UT WOS:000299964000004
ER

PT J
AU Yurgens, A
   Bulaevskii, LN
AF Yurgens, A.
   Bulaevskii, L. N.
TI Temperature distribution in a stack of intrinsic Josephson junctions
   with their CuO-plane electrodes oriented perpendicular to supporting
   substrate
SO SUPERCONDUCTOR SCIENCE & TECHNOLOGY
LA English
DT Article
ID THERMAL-CONDUCTIVITY; SINGLE-CRYSTALS; PLASMA EMISSION; COOPER PAIRS;
   BI2SR2CACU2O8+DELTA; SUPERCONDUCTORS; RADIATION; TRANSPORT; WAVES
AB We numerically study Joule heating in a THz emitter made of Bi2Sr2CaCu2O8+delta (Bi2212) single crystal with its CuO planes oriented perpendicular to supporting substrate. The single crystal is glued to the substrate by a layer of PMMA. The electrical current is applied in the c-axis direction across many intrinsic Josephson junctions (IJJ's) in Bi2212. The calculations show that the internal temperature increases to an acceptable 10-20 K only above the bath temperature for a Joule power density of similar to 10(5) W cm(-3) typical for experiments on THz emission from IJJ's. This makes the suggested geometry promising for boosting the output power of the emitter.
C1 [Yurgens, A.] Chalmers, Dept Microtechnol & Nanosci MC2, SE-41296 Gothenburg, Sweden.
   [Bulaevskii, L. N.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Yurgens, A (reprint author), Chalmers, Dept Microtechnol & Nanosci MC2, SE-41296 Gothenburg, Sweden.
EM yurgens@chalmers.se
RI Yurgens, August/C-6319-2012
OI Yurgens, August/0000-0002-3038-1911
FU Swedish Research Council through the Linnaeus Centrum; National Nuclear
   Security Administration of the US Department of Energy
FX AY acknowledges support from the Swedish Research Council through the
   Linnaeus Centrum 'Engineering quantum systems'. The work of LNB was
   carried out under the auspices of the National Nuclear Security
   Administration of the US Department of Energy by the LANL/LDRD Program.
NR 27
TC 10
Z9 10
U1 0
U2 4
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 0953-2048
EI 1361-6668
J9 SUPERCOND SCI TECH
JI Supercond. Sci. Technol.
PD JAN
PY 2011
VL 24
IS 1
AR 015003
DI 10.1088/0953-2048/24/1/015003
PG 5
WC Physics, Applied; Physics, Condensed Matter
SC Physics
GA 695BA
UT WOS:000285344400004
ER

PT J
AU Zhu, ZH
   Shutthanandan, V
   Nachimuthu, P
AF Zhu, Zihua
   Shutthanandan, Vaithiyalingam
   Nachimuthu, Ponnusamy
TI Using C-60(+) sputtering to improve detection limit of nitrogen in zinc
   oxide
SO SURFACE AND INTERFACE ANALYSIS
LA English
DT Article; Proceedings Paper
CT SIMS XVII Conference
CY SEP, 2009
CL Toronto, CANADA
DE depth profiling; ToF-SIMS; zinc oxide; nitrogen; C-60(+); Cs+
ID BOMBARDMENT; DEPOSITION; FILMS
AB C-60(+) sputtering was firstly used to determine depth profile of nitrogen in zinc oxide materials by time-of-flight (ToF) SIMS. Compared to traditional Cs+ sputtering depth profiling, the C-60(+) sputtering provides increase in signal intensity by a factor of over 200 and improves the detection limit by a factor of about 10. In addition, our XPS results show that sputtering zinc oxide materials by 10 keV C-60(+) to very little carbon deposition at the bottom of the sputter crater. Copyright (C) 2010 John Wiley & Sons, Ltd.
C1 [Zhu, Zihua; Shutthanandan, Vaithiyalingam; Nachimuthu, Ponnusamy] Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA.
RP Zhu, ZH (reprint author), Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA.
EM zihua.zhu@pnl.gov
RI Zhu, Zihua/K-7652-2012
FU Department of Energy's Office of Biological and Environmental Research
   at Pacific Northwest National Laboratory (PNNL); Battelle for the US
   Department of Energy [DE-AC05-76RL01830]
FX This research was performed using Environmental Molecular Sciences
   Laboratory (EMSL), a national scientific user facility sponsored by the
   Department of Energy's Office of Biological and Environmental Research
   located at Pacific Northwest National Laboratory (PNNL). PNNL is
   operated by Battelle for the US Department of Energy under Contract No.
   DE-AC05-76RL01830. The ZnO thin-film samples were obtained from Dr Scott
   A. Chambers in PNNL. The authors would also like to acknowledge writing
   suggestions from Dr Anil Shukla in PNNL.
NR 13
TC 3
Z9 3
U1 0
U2 2
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0142-2421
EI 1096-9918
J9 SURF INTERFACE ANAL
JI Surf. Interface Anal.
PD JAN-FEB
PY 2011
VL 43
IS 1-2
BP 661
EP 663
DI 10.1002/sia.3414
PG 3
WC Chemistry, Physical
SC Chemistry
GA 725TR
UT WOS:000287669500163
ER

PT J
AU Cummings, M
   Gliga, S
   Lukanov, B
   Altman, EI
   Bode, M
   Barrera, EV
AF Cummings, Marvin
   Gliga, Sebastian
   Lukanov, Boris
   Altman, Eric I.
   Bode, Matthias
   Barrera, Enrique V.
TI Surface interactions of molecular C-60 and impact on Ni(100) and
   Co(0001) film growth: A scanning tunneling microscopy study
SO SURFACE SCIENCE
LA English
DT Article
DE C-60; Mobility; Ni(100); Co(0001); Moire; Epitaxy
ID THIN-FILMS; NI(110) SURFACES; METAL-SURFACES; ADSORPTION; ORIENTATION;
   TRANSITION; MORPHOLOGY
AB Here, the interactions of C-60 at the surface of pseudomorphic Ni/Cu(100) and Co/Ru(0001) thin films and its effect on film growth and morphology were determined using in-situ scanning tunneling microscopy (STM) and Auger electron spectroscopy (AES). The novel development of C-60-metallic based nanosystems, such as C-60 molecular junction transistors, hinges on our ability to understand the factors governing structural stability in these nanosystems and the nature of the bond interactions at the C-60-metal interface. In this study. C-60 deposited onto the Ni(100) film surface is observed to be fairly immobile and uniformly distributed across the Ni surface. On the Co(0001) film surface however, C-60 mobility is observed to be severely limited in some regions and highly mobile in others dependent upon Co film surface reconstruction, resulting in a non-uniform distribution of C-60 across the Co film surface. Despite the presence of C-60 on the Ni surface, there is no obvious influence of the C-60 on further Ni film growth. In contrast, during Co film growth, islands only nucleate and grow from step edges or locally around C-60 molecules. The strength of the Co-C-60 bond interaction appears stronger than the Co-Co bond on Co film terrace. Generally, the Ni and Co films both continue epitaxial film growth in the presence of molecular C-60. AES results indicate the C-60 molecules maintain their chemical integrity during growth. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Cummings, Marvin; Barrera, Enrique V.] Rice Univ, Dept Mech Engn & Mat Sci, Houston, TX 77005 USA.
   [Lukanov, Boris; Altman, Eric I.] Yale Univ, Dept Chem & Environm Engn, New Haven, CT 06511 USA.
   [Gliga, Sebastian; Bode, Matthias] Argonne Natl Lab, Ctr Nanoscale Mat, Argonne, IL 60439 USA.
RP Cummings, M (reprint author), Rice Univ, Dept Mech Engn & Mat Sci, 6100 Main St MS-321, Houston, TX 77005 USA.
EM marvinc@rice.edu; ebarrera@rice.edu
RI Gliga, Sebastian/K-4019-2015; Bode, Matthias/S-3249-2016
OI Gliga, Sebastian/0000-0003-1729-1070; Bode, Matthias/0000-0001-7514-5560
FU National Science Foundation (NSF) [HRD-0450363, DMR-0520495]; Welch
   Foundation [C-1494]; U. S. Department of Energy, Office of Science,
   Office of Basic Energy Sciences [DE-AC02-06CH11357]
FX We acknowledge the National Science Foundation (NSF Cooperative
   Agreement Number HRD-0450363) for their financial support, the Welch
   Foundation (grant no. C-1494), and the use of the Yale Center for
   Research on Interface Structures and Phenomena facilities (NSF grant
   number DMR-0520495). Use of the Center for Nanoscale Materials was
   supported by the U. S. Department of Energy, Office of Science, Office
   of Basic Energy Sciences, under Contract No. DE-AC02-06CH11357.
NR 34
TC 4
Z9 4
U1 1
U2 18
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0039-6028
J9 SURF SCI
JI Surf. Sci.
PD JAN
PY 2011
VL 605
IS 1-2
BP 72
EP 80
DI 10.1016/j.susc.2010.10.002
PG 9
WC Chemistry, Physical; Physics, Condensed Matter
SC Chemistry; Physics
GA 703ZQ
UT WOS:000286021000011
ER

PT J
AU Newberg, JT
   Starr, DE
   Yamamoto, S
   Kaya, S
   Kendelewicz, T
   Mysak, ER
   Porsgaard, S
   Salmeron, MB
   Brown, GE
   Nilsson, A
   Bluhm, H
AF Newberg, John T.
   Starr, David E.
   Yamamoto, Susumu
   Kaya, Sarp
   Kendelewicz, Tom
   Mysak, Erin R.
   Porsgaard, Soeren
   Salmeron, Miquel B.
   Brown, Gordon E., Jr.
   Nilsson, Anders
   Bluhm, Hendrik
TI Formation of hydroxyl and water layers on MgO films studied with ambient
   pressure XPS
SO SURFACE SCIENCE
LA English
DT Article
DE Magnesium oxide; Surface chemistry; Geochemistry; Catalysis
ID RAY PHOTOELECTRON-SPECTROSCOPY; MEAN FREE PATHS; OXIDE SURFACES;
   ELECTRONIC-STRUCTURE; ATTENUATION LENGTHS; MGO(100) SURFACES;
   CROSS-SECTIONS; THIN-FILMS; ADSORPTION; MODEL
AB To understand the interaction of water with MgO(100), a detailed quantitative assessment of the interfacial chemistry is necessary. We have used ambient pressure X-ray photoelectron spectroscopy (XPS) to measure molecular (H2O) and dissociative (OH) water adsorption on a 4 monolayer (ML) thick MgO(100)/Ag(100) film under ambient conditions. Since the entire 4 ML metal oxide (Ox) film is probed by XPS, the reaction of the MgO film with water can be quantitatively studied. Using a multilayer model (Model 1) that measures changes in Ox thickness from O is (film) and Ag 3d (substrate) spectra, it is shown that the oxide portion of the MgO film becomes thinner upon hydroxylation. A reaction mechanism is postulated in which the topmost layer of MgO converts to Mg(OH)(2) upon dissociation of water. Based on this mechanism a second model (Model 2) is developed to calculate Ox and OH thickness changes based on OH/Ox intensity ratios from O is spectra measured in situ, with the known initial Ox thickness prior to hydroxylation. Models 1 and 2 are applied to a 0.15 Torr isobar experiment, yielding similar results for H2O. OH and Ox thickness changes as a function of relative humidity. Published by Elsevier B.V.
C1 [Newberg, John T.; Mysak, Erin R.; Bluhm, Hendrik] Lawrence Berkeley Natl Lab, Div Chem Sci, Berkeley, CA 94720 USA.
   [Starr, David E.] Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA.
   [Yamamoto, Susumu; Kaya, Sarp; Brown, Gordon E., Jr.; Nilsson, Anders] SLAC Natl Accelerator Lab, Dept Photon Sci & Stanford Synchrotron Radiat Lig, Menlo Pk, CA 94025 USA.
   [Kendelewicz, Tom; Brown, Gordon E., Jr.] Stanford Univ, Dept Geol & Environm Sci, Stanford, CA 94305 USA.
   [Porsgaard, Soeren; Salmeron, Miquel B.] Lawrence Berkeley Natl Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Porsgaard, Soeren] Aarhus Univ, iNANO, Interdisciplinary Nanosci Ctr, DK-8000 Aarhus C, Denmark.
RP Bluhm, H (reprint author), Lawrence Berkeley Natl Lab, Div Chem Sci, Berkeley, CA 94720 USA.
EM hbluhm@lbl.gov
RI Nilsson, Anders/E-1943-2011; Yamamoto, Susumu/C-1584-2008; Newberg,
   John/E-8961-2010; Kaya, Sarp/C-4001-2008
OI Nilsson, Anders/0000-0003-1968-8696; Yamamoto,
   Susumu/0000-0002-6116-7993; Kaya, Sarp/0000-0002-2591-5843
FU Office of Science, Biological and Environmental Research, Environmental
   Remediation Sciences Division (ERSD), U.S. Department of Energy
   [DE-AC02-05CH11231]; National Science Foundation under (Stanford
   Environmental Molecular Science Institute) [CHE-0431425]; Director,
   Office of Science, Office of Basic Energy Sciences, Division of Chemical
   Sciences, Geosciences of the U.S. Department of Energy
   [DE-AC02-05CH11231]
FX This work was supported by the Office of Science, Biological and
   Environmental Research, Environmental Remediation Sciences Division
   (ERSD), U.S. Department of Energy under Contract No. DE-AC02-05CH11231,
   and by the National Science Foundation under Contract No. CHE-0431425
   (Stanford Environmental Molecular Science Institute). The ALS, and the
   ALS-MES beamline 11.0.2 are supported by the Director, Office of
   Science, Office of Basic Energy Sciences, Division of Chemical Sciences,
   Geosciences of the U.S. Department of Energy at the Lawrence Berkeley
   National Laboratory under Contract No. DE-AC02-05CH11231.
NR 57
TC 45
Z9 45
U1 6
U2 93
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0039-6028
J9 SURF SCI
JI Surf. Sci.
PD JAN
PY 2011
VL 605
IS 1-2
BP 89
EP 94
DI 10.1016/j.susc.2010.10.004
PG 6
WC Chemistry, Physical; Physics, Condensed Matter
SC Chemistry; Physics
GA 703ZQ
UT WOS:000286021000013
ER

PT S
AU Zhang, YHP
AF Zhang, Y. -H. Percival
BE Zhu, JJY
   Zhang, X
   Pan, XJ
TI Hydrogen Production from Carbohydrates: A Mini-Review
SO SUSTAINABLE PRODUCTION OF FUELS, CHEMICALS, AND FIBERS FROM FOREST
   BIOMASS
SE ACS Symposium Series
LA English
DT Article; Book Chapter
ID SYNTHETIC ENZYMATIC PATHWAY; CLOSTRIDIUM-THERMOCELLUM; BIOMASS
   GASIFICATION; BIOHYDROGEN PRODUCTION; CELLULOSE UTILIZATION; AFFINITY
   ADSORPTION; RENEWABLE HYDROGEN; SOLID-WASTES; HYDROLYSIS; WATER
AB The hydrogen economy promises a clean energy future featuring higher energy utilization efficiency and fewer pollutants compared to liquid fuel/internal combustion engines. Hydrogen production from the enriched low-cost biomass carbohydrates would achieve nearly zero carbon emissions in a whole life cycle. In this book chapter, we present latest advances of hydrogen generation from biomass carbohydrates by chemical catalysis (e.g., gasification, pyrolysis, gasification in supercritical water, and aqueous phase reforming), biocatalysis (e.g., anaerobic fermentation, electrohydrogenesis, photo-fermentation, and cell-free synthetic pathway biotransformation - SyPaB), and their combinations. Since hydrogen yield or energy efficiency is the most critical economic factor for hydrogen generation, SyPaB that can produce 12 H-2 per glucose equivalent seems to be an ultimate winner. When more stable enzyme building blocks with total turn-over number (TTN) values of more than 3 x 10(7) mol of product per mol of enzyme and engineered redox enzymes that can use low-cost stable biomimetic cofactor are available, cell-free SyPaB would produce hydrogen at the overall costs of less than $2 kg of hydrogen.
C1 [Zhang, Y. -H. Percival] Virginia Tech, Dept Biol Syst Engn, Blacksburg, VA 24061 USA.
   [Zhang, Y. -H. Percival] Virginia Tech, ICTAS, Blacksburg, VA 24061 USA.
   [Zhang, Y. -H. Percival] DOE BioEnergy Sci Ctr BESC, Oak Ridge, TN 37831 USA.
RP Zhang, YHP (reprint author), Virginia Tech, Dept Biol Syst Engn, 210-A Seitz Hall, Blacksburg, VA 24061 USA.
EM ypzhang@vt.edu
NR 69
TC 5
Z9 5
U1 0
U2 6
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 SIXTEENTH ST NW, WASHINGTON, DC 20036 USA
SN 0097-6156
BN 978-0-8412-2643-2
J9 ACS SYM SER
JI ACS Symp. Ser.
PY 2011
VL 1067
BP 203
EP 216
D2 10.1021/bk-2011-1067
PG 14
WC Energy & Fuels; Engineering, Chemical
SC Energy & Fuels; Engineering
GA BDD12
UT WOS:000312747400008
ER

PT S
AU Xia, B
   Bhatia, S
   Bubenheim, B
   Dadgar, M
   Densmore, D
   Anderson, JC
AF Xia, Bing
   Bhatia, Swapnil
   Bubenheim, Ben
   Dadgar, Maisam
   Densmore, Douglas
   Anderson, J. Christopher
BE Voigt, C
TI DEVELOPER'S AND USER'S GUIDE TO CLOTHO v2.0: A SOFTWARE PLATFORM FOR THE
   CREATION OF SYNTHETIC BIOLOGICAL SYSTEMS
SO SYNTHETIC BIOLOGY, PT B: COMPUTER AIDED DESIGN AND DNA ASSEMBLY
SE Methods in Enzymology
LA English
DT Review; Book Chapter
AB To design the complex systems that synthetic biologists propose to create, software tools must be developed. Critical to success is the enablement of collaboration across our community such that individual tools that perform specific tasks combine with other tools to provide multiplicative benefits. This will require standardization of the form of the data that exists within the field (Parts, Strains, measurements, etc.), a software environment that enables communication between tools, and a sharing mechanism for distributing the tools. Additionally, this data model must describe the data in a sufficiently rigorous and validated form such that meaningful layers of abstraction can be built upon the base. Herein, we describe a software platform called "Clotho" which provides such a data model, and the plugin and sharing mechanisms needed for a rich tool environment. This document provides a tutorial for users of Clotho and information for software developers who wish to contribute new tools (known as "Apps") to it.
C1 [Xia, Bing; Bubenheim, Ben; Anderson, J. Christopher] Univ Calif Berkeley, Dept Bioengn, Berkeley, CA 94720 USA.
   [Bhatia, Swapnil; Densmore, Douglas] Boston Univ, Dept Elect & Comp Engn, Boston, MA 02215 USA.
   [Dadgar, Maisam; Densmore, Douglas] Boston Univ, Dept Biomed Engn, Boston, MA 02215 USA.
   [Anderson, J. Christopher] Univ Calif, SynBERC Synthet Biol Engn Res Ctr, Emeryville, CA USA.
   [Anderson, J. Christopher] Univ Calif, Calif Inst Quantitat Biol Res QB3, Emeryville, CA USA.
   [Anderson, J. Christopher] Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA USA.
RP Xia, B (reprint author), Univ Calif Berkeley, Dept Bioengn, Berkeley, CA 94720 USA.
OI Bhatia, Swapnil /0000-0003-1079-7570
FU SynBERC NSF ERG; Autodesk; Quintara Biosciences
FX The authors would like to thank the members of the UC Berkeley 2008 iGEM
   team (Anne Van Devender, Matthew Johnson, Nade Sritanyaratana); the UC
   Berkeley 2009 iGEM team (Lesia Bilitchenko, Joanna Chen, Adam Liu,
   Richard Mar, Thien Nguyen, Nina Revko); Josh Kittleson, Michal
   Galdzicki, Tim Hsiau, Tim Ham, Carlos Olguin, and Cesar Rodriguez for
   their help in support for getting Clotho development, infrastructure,
   and publicity to the point at which it is today. Financial support was
   provided by SynBERC NSF ERG, Autodesk, and Quintara Biosciences.
NR 7
TC 35
Z9 35
U1 0
U2 8
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0076-6879
BN 978-0-12-385120-8
J9 METHOD ENZYMOL
JI Methods Enzymol.
PY 2011
VL 498
BP 97
EP 135
DI 10.1016/B978-0-12-385120-8.00005-X
PG 39
WC Biochemical Research Methods; Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA BVN83
UT WOS:000292007500005
PM 21601675
ER

PT S
AU Leguia, M
   Brophy, J
   Densmore, D
   Anderson, JC
AF Leguia, Mariana
   Brophy, Jennifer
   Densmore, Douglas
   Anderson, J. Christopher
BE Voigt, C
TI AUTOMATED ASSEMBLY OF STANDARD BIOLOGICAL PARTS
SO SYNTHETIC BIOLOGY, PT B: COMPUTER AIDED DESIGN AND DNA ASSEMBLY
SE Methods in Enzymology
LA English
DT Review; Book Chapter
AB The primary bottleneck in synthetic biology research today is the construction of physical DNAs, a process that is often expensive, time-consuming, and riddled with cloning difficulties associated with the uniqueness of each DNA sequence. We have developed a series of biological and computational tools that lower existing barriers to automation and scaling to enable affordable, fast, and accurate construction of large DNA sets. Here we provide detailed protocols for high-throughput, automated assembly of BglBrick standard biological parts using iterative 2ab reactions. We have implemented these protocols on a minimal hardware platform consisting of a Biomek 3000 liquid handling robot, a benchtop centrifuge and a plate thermocycler, with additional support from a software tool called AssemblyManager. This methodology enables parallel assembly of several hundred large error-free DNAs with a 96+% success rate.
C1 [Leguia, Mariana; Brophy, Jennifer; Anderson, J. Christopher] Univ Calif Berkeley, Dept Bioengn, Berkeley, CA 94720 USA.
   [Leguia, Mariana; Anderson, J. Christopher] Univ Calif Berkeley, Calif Inst Quantitat Biol Res QB3, Berkeley, CA 94720 USA.
   [Leguia, Mariana; Anderson, J. Christopher] Synthet Biol Engn Res Ctr, Berkeley, CA USA.
   [Densmore, Douglas] Boston Univ, Dept Elect & Comp Engn, Boston, MA 02215 USA.
   [Anderson, J. Christopher] Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA USA.
RP Leguia, M (reprint author), Univ Calif Berkeley, Dept Bioengn, Berkeley, CA 94720 USA.
FU SynBERC
FX We thank Martin Pollard of the Joint Genome Institute (www.jgi.doe.gov)
   for helpful discussions on assembly line automation design. We also
   thank Nina Reyko and the 2009 Berkeley computational iGEM team for early
   work on the automated assembly software. This work was funded by SynBERC
   (www.synberc.org).
NR 4
TC 17
Z9 18
U1 0
U2 11
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0076-6879
BN 978-0-12-385120-8
J9 METHOD ENZYMOL
JI Methods Enzymol.
PY 2011
VL 498
BP 363
EP 397
DI 10.1016/B978-0-12-385120-8.00016-4
PG 35
WC Biochemical Research Methods; Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA BVN83
UT WOS:000292007500016
PM 21601686
ER

PT S
AU King, DL
   de Klerk, A
AF King, David L.
   de Klerk, Arno
BE DeKlerk, A
   King, DL
TI Overview of Feed-to-Liquid (XTL) Conversion
SO SYNTHETIC LIQUIDS PRODUCTION AND REFINING
SE ACS Symposium Series
LA English
DT Proceedings Paper
CT Symposium on Coal, Gas, Biomass and Waste-to-Liquids Conversion
CY AUG, 2010
CL Boston, MA
SP ACS, Div Fuel Chem
ID FISCHER-TROPSCH; POLYETHYLENE; METHANOL; DEGRADATION; PYROLYSIS;
   CATALYSTS
AB The overview addresses some important questions related to the future relevance of XTL technology, sustainability, non-carbon based carriers and carbon (CO2) footprint. The difference between XTL conversion technologies are explained, which covers topics such as direct liquefaction, pyrolysis and indirect liquefaction (methanol and Fischer-Tropsch). The present status of XTL technology is discussed.
C1 [King, David L.] Pacific Northwest Natl Lab, Hydrocarbon Proc, POB 999, Richland, WA 99352 USA.
   [de Klerk, Arno] Univ Alberta, Dept Chem & Mat Engn, Edmonton, AB T6G 2V4, Canada.
RP King, DL (reprint author), Pacific Northwest Natl Lab, Hydrocarbon Proc, POB 999, Richland, WA 99352 USA.
EM david.king@pnl.gov; deklerk@ualberta.ca
OI de Klerk, Arno/0000-0002-8146-9024
NR 56
TC 2
Z9 2
U1 0
U2 2
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 SIXTEENTH ST NW, WASHINGTON, DC 20036 USA
SN 0097-6156
BN 978-0-8412-2681-4
J9 ACS SYM SER
JI ACS Symp. Ser.
PY 2011
VL 1084
BP 1
EP +
PG 4
WC Energy & Fuels
SC Energy & Fuels
GA BDE77
UT WOS:000312966300001
ER

PT S
AU Bolin, TB
AF Bolin, Trudy B.
BE DeKlerk, A
   King, DL
TI The Use of S-XANES To Track Thermal Transformations of Metal Sulfides in
   Argonne Premium Coals
SO SYNTHETIC LIQUIDS PRODUCTION AND REFINING
SE ACS Symposium Series
LA English
DT Proceedings Paper
CT Symposium on Coal, Gas, Biomass and Waste-to-Liquids Conversion
CY AUG, 2010
CL Boston, MA
SP ACS, Div Fuel Chem
ID RAY-ABSORPTION-SPECTROSCOPY; X-RAY; SULFUR; FORMS; MODEL
AB Argonne Premium Coal Samples are used by researchers world-wide as standards in coal research. They consist of a suite of eight samples of varying rank from the United States. The Sulfur X-ray Near-Edge Absorption Spectroscopy (S-XANES) third-derivative analysis method utilizes a well-defined library of model compounds to curve fit each sample spectrum and enables sulfur speciation to within about 10% for materials such as coals and kerogens. This direct non-destructive characterization technique, used in conjunction with other techniques such as X-ray photoelectron spectroscopy (XPS), can provide valuable information about chemical and thermal sulfur transformations. The S-XANES third-derivative analysis method provides quantitative results for organic sulfur species in coal but has not been used to quantify pyritic sulfur until recently. In general, the direct determination of the pyrite content, a metal sulfide, has been problematic. It is known through wet chemical methods that several of the Argonne premium coal samples exceed 50 mole% pyrite but only show a weak pyrite feature in the S-XANES absorbance and third-derivative spectrum. It has been shown that particle size effects are responsible for attenuating the pyrite signal for high-pyrite-containing Argonne Premium coals. In this study, iron sulfide transformations at two stages of pyrolysis for an Illinois # 6 Argonne Premium coal and an isolated pyrite sample are quantified using S-XANES.
C1 Argonne Natl Lab, Argonne, IL 60439 USA.
RP Bolin, TB (reprint author), Argonne Natl Lab, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM bolitru@aps.anl.gov
NR 9
TC 1
Z9 1
U1 0
U2 0
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 SIXTEENTH ST NW, WASHINGTON, DC 20036 USA
SN 0097-6156
BN 978-0-8412-2681-4
J9 ACS SYM SER
JI ACS Symp. Ser.
PY 2011
VL 1084
BP 103
EP 108
PG 6
WC Energy & Fuels
SC Energy & Fuels
GA BDE77
UT WOS:000312966300004
ER

PT B
AU Wiedlea, A
AF Wiedlea, Andrew
BE Johnson, SB
   Gormley, TJ
   Kessler, SS
   Mott, CD
   PattersonHine, A
   Reichard, KM
   Scandura, PA
TI Highly Reliable Organizations
SO SYSTEM HEALTH MANAGEMENT: WITH AEROSPACE APPLICATIONS
LA English
DT Article; Book Chapter
ID HIGH-RELIABILITY; SYSTEMS; RISK; MANAGEMENT
C1 Los Alamos Natl Lab, Los Alamos, NM 87544 USA.
RP Wiedlea, A (reprint author), Los Alamos Natl Lab, Los Alamos, NM 87544 USA.
NR 62
TC 0
Z9 0
U1 0
U2 0
PU BLACKWELL SCIENCE PUBL
PI OXFORD
PA OSNEY MEAD, OXFORD OX2 0EL, ENGLAND
BN 978-1-119-99404-6; 978-0-470-74133-7
PY 2011
BP 49
EP 63
D2 10.1002/9781119994053
PG 15
WC Engineering, Aerospace; Operations Research & Management Science
SC Engineering; Operations Research & Management Science
GA BA6FH
UT WOS:000337126800006
ER

PT S
AU Wu, ZR
   Ng, WR
   Gehm, M
   Xin, H
AF Wu, Ziran
   Ng, Wei-Ren
   Gehm, Michael
   Xin, Hao
BE Sadwick, LP
   OSullivan, CMM
TI Electromagnetic Crystal (EMXT) based THz Components
SO TERAHERTZ TECHNOLOGY AND APPLICATIONS IV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Terahertz Technology and Applications IV
CY JAN 26-27, 2011
CL San Francisco, CA
SP SPIE
DE Terahertz; electromagnetic crystal; rapid prototyping; integrated system
AB Various all-dielectric electromagnetic crystal (EMXT) based THz components, including filter/reflector, waveguide, antenna, and transition structure to planar circuits are proposed and simulated. Several of them have been fabricated via a THz rapid prototyping technique, and the measurements show very good consistency with the simulations. Potential integrated THz micro-systems could be constructed using these components. The layer-by-layer printing virtue of the rapid prototyping technique may enable the integration and packaging of various THz components in a systematic manner.
C1 [Wu, Ziran] Stanford Linear Accelerator Ctr, Menlo Pk, CA 94025 USA.
RP Wu, ZR (reprint author), Stanford Linear Accelerator Ctr, 2575 Sand Hill Rd, Menlo Pk, CA 94025 USA.
RI Wu, Ziran/G-2308-2014
OI Wu, Ziran/0000-0003-2009-991X
NR 5
TC 0
Z9 0
U1 0
U2 0
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-81948-475-8
J9 PROC SPIE
PY 2011
VL 7938
AR 79380I
DI 10.1117/12.874213
PG 7
WC Optics; Physics, Applied
SC Optics; Physics
GA BYD22
UT WOS:000298083400016
ER

PT J
AU Li, ZB
   Jin, QL
   Huang, CW
   Dasa, S
   Chen, LH
   Yap, LP
   Liu, SL
   Cai, HC
   Park, R
   Conti, PS
AF Li, Zibo
   Jin, Qiaoling
   Huang, Chiunwei
   Dasa, Siva
   Chen, Liaohai
   Yap, Li-peng
   Liu, Shuanglong
   Cai, Hancheng
   Park, Ryan
   Conti, Peter S.
TI Trackable and Targeted Phage as Positron Emission Tomography (PET) Agent
   for Cancer Imaging
SO THERANOSTICS
LA English
DT Article
DE phage particle; positron emission tomography; integrin alpha(v)beta(3);
   RGD; Cu-64
ID INTEGRIN ALPHA(V)BETA(3) EXPRESSION; RGD PEPTIDES; BACTERIOPHAGES;
   NANOPARTICLES; NANOMATERIALS; CHEMISTRY; TOXICITY; MELANOMA
AB The recent advancement of nanotechnology has provided unprecedented opportunities for the development of nanoparticle enabled technologies for detecting and treating cancer. Here, we reported the construction of a PET trackable organic nanoplatform based on phage particle for targeted tumor imaging. Method: The integrin alpha(v)beta(3) targeted phage nanoparticle was constructed by expressing RGD peptides on its surface. The target binding affinity of this engineered phage particle was evaluated in vitro. A bifunctional chelator (BFC) 1,4,7,10-tetraazadodecane-N,N',N '',N"'-tetraacetic acid (DOTA) or 4-((8-amino-3,6,10,13,16,19-hexaazabicyclo [6.6.6] icosane-1-ylamino) methyl) benzoic acid (AmBaSar) was then conjugated to the phage surface for (64)Cu(2+) chelation. After (64)Cu radiolabeling, microPET imaging was performed in U87MG tumor model and the receptor specificity was confirmed by blocking experiments. Results: The phage-RGD demonstrated target specificity based on ELISA experiment. According to the TEM images, the morphology of the phage was unchanged after the modification with BFCs. The labeling yield was 25 +/- 4% for (64)Cu-DOTA-phage-RGD and 46 +/- 5% for (64)Cu-AmBaSar-phage-RGD, respectively. At 1 h time point, (64)Cu-DOTA-phage-RGD and (64)Cu-AmBaSar-phage-RGD have comparable tumor uptake (similar to 8%ID/g). However, (64)Cu-AmBaSar-phage-RGD showed significantly higher tumor uptake (13.2 +/- 1.5 %ID/g, P<0.05) at late time points compared with (64)Cu-DOTA-phage-RGD (10 +/- 1.2 %ID/g). (64)Cu-AmBaSar-phage-RGD also demonstrated significantly lower liver uptake, which could be attributed to the stability difference between these chelators. There is no significant difference between two tracers regarding the uptake in kidney and muscle at all time points tested. In order to confirm the receptor specificity, blocking experiment was performed. In the RGD blocking experiment, the cold RGD peptide was injected 2 min before the administration of (64)Cu-AmBaSar-phage-RGD. Tumor uptake was partially blocked at 1 h time point. Phage-RGD particle was also used as the competitive ligand. In this case, the tumor uptake was significantly reduced and the value was kept at low level consistently. Conclusion: In this report, we constructed a PET trackable nanoplatform based on phage particle and demonstrated the imaging capability of these targeted agents. We also demonstrated that the choice of chelator could have significant impact on imaging results of nano-agents. The method established in this research may be applicable to other receptor/ligand systems for theranostic agent construction, which could have an immediate and profound impact on the field of imaging/therapy and lay the foundation for the construction of next generation cancer specific theranostic agents.
C1 [Li, Zibo; Huang, Chiunwei; Yap, Li-peng; Liu, Shuanglong; Cai, Hancheng; Park, Ryan; Conti, Peter S.] Univ So Calif, Mol Imaging Ctr, Dept Radiol, Los Angeles, CA 90033 USA.
   [Jin, Qiaoling; Dasa, Siva; Chen, Liaohai] Argonne Natl Lab, Biosci Div, Argonne, IL 60439 USA.
RP Li, ZB (reprint author), Univ So Calif, Mol Imaging Ctr, Dept Radiol, Los Angeles, CA 90033 USA.
EM ziboli@usc.edu; lhchen@anl.gov
RI Cai, Hancheng/B-4299-2012
FU USC Department of Radiology; Department of Energy [DE-SC0002353];
   National Cancer Institute [P30A014089]; USC Biomedical Imaging Science
   Initiative
FX This work was supported by the USC Department of Radiology, the
   Department of Energy (DE-SC0002353), the National Cancer Institute
   (P30A014089), and the USC Biomedical Imaging Science Initiative.
NR 38
TC 18
Z9 18
U1 1
U2 28
PU IVYSPRING INT PUBL
PI LAKE HAVEN
PA PO BOX 4546, LAKE HAVEN, NSW 2263, AUSTRALIA
SN 1838-7640
J9 THERANOSTICS
JI Theranostics
PY 2011
VL 1
BP 371
EP 380
DI 10.7150/thno/v01p0371
PG 10
WC Medicine, Research & Experimental
SC Research & Experimental Medicine
GA 876PX
UT WOS:000299121000031
PM 22211143
ER

PT B
AU Wang, DB
   Kodali, VK
   Curtis, JE
   Riedo, E
AF Wang, Debin
   Kodali, Vamsi K.
   Curtis, Jennifer E.
   Riedo, Elisa
BA Tseng, AA
BF Tseng, AA
TI Nanofabrication of Functional Nanostructures by Thermochemical
   Nanolithography
SO TIP-BASED NANOFABRICATION: FUNDAMENTALS AND APPLICATIONS
LA English
DT Article; Book Chapter
DE Atomic force microscopy (AFM); Scanning probe microscopy (SPM);
   Nanofabrication; Nanomanufacturing; Nanolithography; Nanopatterning;
   Thermochemical nanolithography (TCNL); Thermomechanical nanolithography;
   Thermal dip-pen nanolithography (tDPN); Millipede; Wettability;
   Conjugated polymer; Graphene; Graphene oxide
ID DIP-PEN NANOLITHOGRAPHY; ATOMIC-FORCE MICROSCOPE; SILICON
   MICROCANTILEVER HEATERS; REDUCED GRAPHENE OXIDE; SCANNING TUNNELING
   MICROSCOPE; BLOCK-COPOLYMER FILMS; DATA-STORAGE; NANOMETER-SCALE; PROBE
   ARRAYS; POLYMER NANOSTRUCTURES
AB Nanofabrication is the process of building functional structures with nanoscale dimensions, which can be used as components, devices, or systems with high density, in large quantities, and at low cost. Since the invention of scanning tunneling microscopy (STM) and atomic force microscopy (AFM) in 1980s, the application of scanning probe based lithography (SPL) techniques for modification of substrates and creation of functional nanoscale structures and nanostructured materials has been widespread, resulting in the emergence of a large variety of methodologies. In this chapter, we review the recent development of a thermal probe based nanofabrication technique called thermochemical nanolithography (TCNL). We start with a brief review of the evolution of the thermal AFM probes integrated with resistive heaters. We then provide an overview of some established nanofabrication techniques in which thermal probes are used, namely thermomechanical nanolithography, the Millipede project, and thermal dip-pen nanolithography. We discuss the heat transfer mechanisms of the thermal probes in the thermal writing process of TCNL. The remainder of the chapter focuses on the use of TCNL on a variety of systems and thermochemical reactions. TCNL has been successfully used for fabrication of functional nanostructures that are appealing for various applications in nanofluidics, nanoelectronics, nanophotonics, and biosensing devices. Finally, we close this chapter by discussing some future research directions where the capabilities and robustness of TCNL can be further extended.
C1 [Kodali, Vamsi K.; Riedo, Elisa] Univ Heidelberg, Sch Phys, Dept Biophys Chem, Georgia Inst Technol, Atlanta, GA 30332 USA.
   [Curtis, Jennifer E.] Georgia Inst Technol, Sch Phys, Petit Inst Bioengn & Biosci, Atlanta, GA 30332 USA.
   [Wang, Debin] Univ Calif Berkeley, Lawrence Berkeley Lab, Mol Foundry, Berkeley, CA 94720 USA.
RP Riedo, E (reprint author), Univ Heidelberg, Sch Phys, Dept Biophys Chem, Georgia Inst Technol, Atlanta, GA 30332 USA.
EM debinwang@lbl.gov; vamsi.kodali@physics.gatech.edu;
   jennifer.curtis@physics.gatech.edu; elisa.riedo@physics.gatech.edu
RI Wang, Debin/H-2713-2012; 
OI Wang, Debin/0000-0001-8052-731X; Kodali, Vamsi/0000-0001-6177-0568
NR 106
TC 2
Z9 2
U1 1
U2 4
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4419-9898-9
PY 2011
BP 265
EP 297
DI 10.1007/978-1-4419-9899-6_7
D2 10.1007/978-1-4419-9899-6
PG 33
WC Nanoscience & Nanotechnology
SC Science & Technology - Other Topics
GA BWK23
UT WOS:000294134800007
ER

PT J
AU Sullivan, JL
   Gaines, L
   Burnham, A
AF Sullivan, J. L.
   Gaines, L.
   Burnham, A.
GP TMS
TI ROLE OF RECYCLING IN THE LIFE CYCLE OF BATTERIES
SO TMS2011 SUPPLEMENTAL PROCEEDINGS, VOL 1: MATERIALS PROCESSING AND ENERGY
   MATERIALS
LA English
DT Proceedings Paper
CT TMS 140th Annual Meeting and Exhibition
CY FEB 27-MAR 03, 2011
CL San Diego, CA
SP TMS
DE battery; materials; recycling; energy
AB Over the last few decades, rechargeable battery production has increased substantially. Applications including phones, computers, power tools, power storage, and electric-drive vehicles are either commonplace or will be in the next decade or so. Because advanced rechargeable batteries, like those using nickel metal hydride or lithium-ion chemistries, consist of less-plentiful and comparatively expensive materials (e. g., nickel, cobalt, cadmium, mischmetal) that often require considerable energy to be formed into battery components, battery recycling has the potential to significantly reduce the burdens associated with the life cycle of batteries. Therefore, the key issue is to determine the most practical type of recycling. Is it feasible to recover such components as anodes, cathodes, and electrolytes, or should the elements be recovered? Estimates of the impacts of battery recycling are given.
C1 [Sullivan, J. L.; Gaines, L.; Burnham, A.] Argonne Natl Lab, Div Energy Syst, Argonne, IL 60439 USA.
RP Sullivan, JL (reprint author), Argonne Natl Lab, Div Energy Syst, Argonne, IL 60439 USA.
NR 10
TC 2
Z9 2
U1 0
U2 2
PU JOHN WILEY & SONS
PI CHICHESTER
PA THE ATRIUM, SOUTHERN GATE, CHICHESTER, W SUSSEX PO  19 8SQ, ENGLAND
BN 978-1-11802-945-9
PY 2011
BP 25
EP 32
PG 8
WC Materials Science, Multidisciplinary
SC Materials Science
GA BHY24
UT WOS:000327008200003
ER

PT J
AU Shet, S
   Chen, L
   Tang, HW
   Deutsch, T
   Wang, HL
   Ravindra, N
   Yan, YF
   Turner, J
   Al-Jassim, M
AF Shet, Sudhakar
   Chen, Le
   Tang, Houwen
   Deutsch, Todd
   Wang, Heli
   Ravindra, Nuggehalli
   Yan, Yanfa
   Turner, John
   Al-Jassim, Mowafak
GP TMS
TI Effect of gas ambient on the synthesis of Al and N co-doped ZnO:(Al,N)
   films and their influence on PEC response for photoelectrochemical water
   splitting application
SO TMS2011 SUPPLEMENTAL PROCEEDINGS, VOL 1: MATERIALS PROCESSING AND ENERGY
   MATERIALS
LA English
DT Proceedings Paper
CT TMS 140th Annual Meeting and Exhibition
CY FEB 27-MAR 03, 2011
CL San Diego, CA
SP TMS
DE ZnO; RF power; sputter; ZnO:(Al,N); substrate temperature; co-doping;
   gas ambient; photoelectrochemical; crystallinity; N concentration; band
   gap
ID ZNO THIN-FILMS; P-TYPE ZNO; ALIGNED NANORODS; TIO2
AB Al and N co-doped ZnO thin films, ZnO:(Al, N), are synthesized by radio-frequency magnetron sputtering in mixed Ar and N-2 and mixed O-2 and N-2 gas ambient at 100 degrees C. The ZnO:(Al, N) films deposited in mixed Ar and N-2 gas ambient did not incorporate N, whereas ZnO:(Al, N) films deposited in mixed O-2 and N-2 gas ambient showed enhanced N incorporation and crystallinity as compared to ZnO: N thin films deposited in the same gas ambient. As a result, ZnO:(Al, N) films deposited in mixed O-2 and N-2 gas ambient showed higher photocurrents than the ZnO:(Al, N) thin films deposited in mixed Ar and N-2 gas ambient. Our results indicate that the gas ambient plays an important role in N incorporation and crystallinity control in Al and N co-doped ZnO thin films.
C1 [Shet, Sudhakar; Chen, Le; Tang, Houwen; Deutsch, Todd; Wang, Heli; Yan, Yanfa; Turner, John; Al-Jassim, Mowafak] Natl Renewable Energy Lab, Golden, CO 80401 USA.
   [Ravindra, Nuggehalli] New Jersey Inst Technol, Newark, NJ 07102 USA.
RP Shet, S (reprint author), Natl Renewable Energy Lab, Golden, CO 80401 USA.
OI Deutsch, Todd/0000-0001-6577-1226
FU U.S. Department of Energy [DE-AC36-08GO28308]
FX This work was supported by the U.S. Department of Energy under Contract
   # DE-AC36-08GO28308.
NR 29
TC 0
Z9 0
U1 4
U2 6
PU JOHN WILEY & SONS
PI CHICHESTER
PA THE ATRIUM, SOUTHERN GATE, CHICHESTER, W SUSSEX PO  19 8SQ, ENGLAND
BN 978-1-11802-945-9
PY 2011
BP 135
EP 142
PG 8
WC Materials Science, Multidisciplinary
SC Materials Science
GA BHY24
UT WOS:000327008200014
ER

PT J
AU Shet, S
   Wang, HL
   Ravindra, N
   Yan, YF
   Turner, J
   Al-Jassim, M
AF Shet, Sudhakar
   Wang, Heli
   Ravindra, Nuggehalli
   Yan, Yanfa
   Turner, John
   Al-Jassim, Mowafak
GP TMS
TI Influence of substrate temperature on the photoelectrochcmical responses
   of Ga and N co-doped ZnO films
SO TMS2011 SUPPLEMENTAL PROCEEDINGS, VOL 1: MATERIALS PROCESSING AND ENERGY
   MATERIALS
LA English
DT Proceedings Paper
CT TMS 140th Annual Meeting and Exhibition
CY FEB 27-MAR 03, 2011
CL San Diego, CA
SP TMS
DE ZnO; RF power; sputter; substrate temperature; co-doping; gas ambient;
   photoelectrochemical; crystallinity; N concentration; bandgap
ID THIN-FILMS; HYDROGEN-PRODUCTION; ALIGNED NANORODS; ZNO(AL,N) FILMS;
   WATER; PHOTOCATALYSIS; PERFORMANCE; TIO2
AB Ga-N co-doped ZnO thin films with reduced bandgaps were deposited on F-doped tin-oxide-coated glass by radio-frequency magnetron sputtering at different substrate temperatures in mixed N-2 and O-2 gas ambient. We found that Ga-N co-doped ZnO films exhibited enhanced crystallinity compared to undoped ZnO films grown under the same conditions. Furthermore, Ga-N co-doping ensured enhanced N-incorporation in ZnO thin films as the substrate temperature is increased. As a result, Ga-N co-doped ZnO thin films exhibited much improved photoelectrochemical (PEC) response, compared to ZnO thin films. Our results therefore suggest that the passive co-doping approach could be a means to improve PEC response for bandgap-reduced wide-bandgap oxides through impurity incorporation.
C1 [Shet, Sudhakar; Wang, Heli; Yan, Yanfa; Turner, John; Al-Jassim, Mowafak] Natl Renewable Energy Lab, Golden, CO 80401 USA.
   [Shet, Sudhakar; Ravindra, Nuggehalli] New Jersey Inst Technol, Newark, NJ 07102 USA.
RP Shet, S (reprint author), Natl Renewable Energy Lab, Golden, CO 80401 USA.
FU U.S. Department of Energy [DE-AC36-08GO28308]
FX This work was supported by the U.S. Department of Energy under Contract
   # DE-AC36-08GO28308.
NR 35
TC 0
Z9 0
U1 1
U2 2
PU JOHN WILEY & SONS
PI CHICHESTER
PA THE ATRIUM, SOUTHERN GATE, CHICHESTER, W SUSSEX PO  19 8SQ, ENGLAND
BN 978-1-11802-945-9
PY 2011
BP 183
EP 190
PG 8
WC Materials Science, Multidisciplinary
SC Materials Science
GA BHY24
UT WOS:000327008200019
ER

PT J
AU Gorti, SB
   Sabau, AS
   Peter, WH
   Nunn, SD
   Yamamoto, Y
   Chen, W
AF Gorti, Sarma B.
   Sabau, Adrian S.
   Peter, William H.
   Nunn, Stephen D.
   Yamamoto, Yukinori
   Chen, Wei
GP TMS
TI Process Simulation of Cold Pressing and Sintering of Armstrong CP-Ti
   Powders
SO TMS2011 SUPPLEMENTAL PROCEEDINGS, VOL 1: MATERIALS PROCESSING AND ENERGY
   MATERIALS
LA English
DT Proceedings Paper
CT TMS 140th Annual Meeting and Exhibition
CY FEB 27-MAR 03, 2011
CL San Diego, CA
SP TMS
ID RETURN MAPPING ALGORITHM; LOW-COST TITANIUM; DENSIFICATION BEHAVIOR;
   ALLOY POWDER; METAL; PLASTICITY; COMPACTION; MODELS
AB A computational methodology is presented for the process simulation of cold pressing and sintering of Armstrong CP-Ti powders. Since the powder consolidation is governed by specific pressure-dependent constitutive equations, solution algorithms were developed for the ABAQUS user material subroutine, UMAT, for computing the plastic strain increments based on an implicit integration of the nonlinear yield function, flow rule, and hardening equations. Sintering was simulated using a model based on diffusional creep using the user subroutine CREEP. The initial mesh, stress, and density for the simulation of sintering were obtained from the results of the cold pressing simulation, minimizing the errors from decoupling the cold pressing and sintering simulations. Numerical simulation results are presented for the cold compaction followed by a sintering step of the Ti powders. The numerical simulation results for the relative density were compared to those measured from experiments before and after sintering, showing that the relative density can be accurately predicted.
C1 [Gorti, Sarma B.; Sabau, Adrian S.; Peter, William H.; Nunn, Stephen D.; Yamamoto, Yukinori; Chen, Wei] Oak Ridge Natl Lab, Mat Sci & Technol Div, Oak Ridge, TN 37831 USA.
RP Gorti, SB (reprint author), Oak Ridge Natl Lab, Mat Sci & Technol Div, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA.
OI Sabau, Adrian/0000-0003-3088-6474
NR 26
TC 0
Z9 0
U1 0
U2 1
PU JOHN WILEY & SONS
PI CHICHESTER
PA THE ATRIUM, SOUTHERN GATE, CHICHESTER, W SUSSEX PO  19 8SQ, ENGLAND
BN 978-1-11802-945-9
PY 2011
BP 483
EP 490
PG 8
WC Materials Science, Multidisciplinary
SC Materials Science
GA BHY24
UT WOS:000327008200054
ER

PT J
AU Sediako, D
   Kasprzak, W
   Swainson, I
   Garlea, O
AF Sediako, D.
   Kasprzak, W.
   Swainson, I.
   Garlea, O.
GP TMS
TI SOLIDIFICATION ANALYSIS OF Al-Si ALLOYS MODIFIED WITH ADDITION OF Cu
   USING IN-SITU NEUTRON DIFFRACTION
SO TMS2011 SUPPLEMENTAL PROCEEDINGS, VOL 2: MATERIALS FABRICATION,
   PROPERTIES, CHARACTERIZATION, AND MODELING
LA English
DT Proceedings Paper
CT TMS 140th Annual Meeting and Exhibition
CY FEB 27-MAR 03, 2011
CL San Diego, CA
SP TMS
DE hypereutectic aluminum alloy; solidification; neutron diffraction; phase
   evolution; thermal analysis
ID MONOLITHIC CYLINDER BLOCKS; DIE-CASTING ALLOY; ALUMINUM-ALLOYS;
   MICROSTRUCTURE
AB The potential of application of in-situ neutron diffraction for studies of solidification of Al alloys have been previously reported by the authors for the binary hypereutectic A-Si system. This illustrated the potential of neutron diffraction for high resolution melt analysis at near-liquidus temperatures required for advanced studies of grain refining, eutectic modification, etc. The solid and liquid volume fractions were determined based on the change of intensity of neutron diffraction peaks over the solidification interval.
   The path of non-equilibrium solidification for the alloy modified with addition of copper and magnesium is very complex. Phase diagrams and FactSage-based computations give only approximate kinetics of solid phase(s) evolution during cooling and solidification. On the other hand, in-situ neutron diffraction, coupled with the results of thermal analysis, provides non-biased experimental data on phase evolution; for example, on formation of FCC Al-Cu-Si and diamond silicon during solidification of hypereutectic Al-Si-Cu alloy.
C1 [Sediako, D.; Swainson, I.] CNR, Canadian Neutron Beam Ctr, Chalk River, ON, Canada.
   [Kasprzak, W.] Natl Res Ctr, Canmet MTL, Ottawa, ON, Canada.
   [Garlea, O.] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
RP Sediako, D (reprint author), CNR, Canadian Neutron Beam Ctr, Chalk River, ON, Canada.
RI Garlea, Vasile/A-4994-2016
OI Garlea, Vasile/0000-0002-5322-7271
FU Advanced Structural Materials for Next Generation Vehicles (ASM-NGV)
   Program of Natural Resources Canada; Natural Sciences and Engineering
   Research Council of Canada; Scientific User Facilities Division; Office
   of Basic Energy Sciences, U. S. Department of Energy
FX The authors would like to acknowledge the support of the Advanced
   Structural Materials for Next Generation Vehicles (ASM-NGV) Program of
   Natural Resources Canada. Studies completed at the Canadian Neutron Beam
   Center were partially sponsored by grant from Natural Sciences and
   Engineering Research Council of Canada. A portion of this research at
   Oak Ridge National Laboratory's High Flux Isotope Reactor was sponsored
   by the Scientific User Facilities Division, Office of Basic Energy
   Sciences, U. S. Department of Energy. The authors would like to thank
   Ms. Marta Aniolek M. Se. Eng., CANMET-MTL, for assistance with for
   cooling curve analysis and Mr. Denis Shishin of University of Montreal
   for assistance in conducting the FactSage analysis.
NR 12
TC 3
Z9 3
U1 1
U2 4
PU JOHN WILEY & SONS
PI CHICHESTER
PA THE ATRIUM, SOUTHERN GATE, CHICHESTER, W SUSSEX PO  19 8SQ, ENGLAND
BN 978-1-11802-946-6
PY 2011
BP 279
EP 289
PG 11
WC Materials Science, Multidisciplinary
SC Materials Science
GA BHY36
UT WOS:000327013200035
ER

PT J
AU Sediako, D
   D'Elia, F
   Lombardi, A
   Machin, A
   Ravindran, C
   Hubbard, C
   Mackay, R
AF Sediako, D.
   D'Elia, F.
   Lombardi, A.
   Machin, A.
   Ravindran, C.
   Hubbard, C.
   Mackay, R.
GP TMS
TI APPLICATION OF NEUTRON DIFFRACTION IN ANALYSIS OF RESIDUAL STRESS
   PROFILES IN THE CYLINDER WEB REGION OF AN AS-CAST V6 Al ENGINE BLOCK
   WITH CAST-IN Fe LINERS
SO TMS2011 SUPPLEMENTAL PROCEEDINGS, VOL 2: MATERIALS FABRICATION,
   PROPERTIES, CHARACTERIZATION, AND MODELING
LA English
DT Proceedings Paper
CT TMS 140th Annual Meeting and Exhibition
CY FEB 27-MAR 03, 2011
CL San Diego, CA
SP TMS
DE 319 aluminum alloy; engine block; sand casting; neutron diffraction;
   residual stresses; microstructure; hardness
AB Continuous efforts to develop a lightweight alloy suitable for the most demanding applications in automotive industry resulted in a number of advanced aluminum (Al) and magnesium alloys and manufacturing routes. One example of this is the application of 319 Al alloy for production of 3.6L V6 gasoline engine blocks. Aluminum is sand cast around Fe-liner cylinder inserts, prior to undergoing the T7 heat treatment process. One of the critical factors determining the quality of the final product is the type, level, and profile of residual stresses along the Fe liners (or extent of liner distortion) that are always present in a cast component.
   In this study, neutron diffraction was used to characterize residual stresses along the Al and the Fe liners in the web region of the cast engine block. The strains were measured both in Al and Fe in hoop, radial, and axial orientations. The stresses were subsequently determined using generalized Hooke's law. Further, optical microscopy and hardness measurements were performed from top to bottom along the interbore region of each cylinder. The results indicate that a variation in cooling rate along the cylinder caused a refinement of dendrites at the bottom of the cylinder, resulting in increased hardness.
   This study gives invaluable insight on anticipated service properties of the engine block and demonstrates that neutron strain mapping is an efficient tool for optimization of manufacturing technologies.
C1 [Sediako, D.] Natl Res Council Canada, Canadian Neutron Beam Ctr, Chalk River Labs, Chalk River, ON K0J 1J0, Canada.
   [D'Elia, F.; Lombardi, A.; Machin, A.; Ravindran, C.] Ryerson Univ, Ctr Near Net Shape Proc Mat, Toronto, ON M5B 2K3, Canada.
   [Hubbard, C.] Oak Ridge Natl Lab, Oak Ridge, TN 37831 USA.
   [Mackay, R.] Nemak Canada, Windsor, ON N9C 4G8, Canada.
RP Sediako, D (reprint author), Natl Res Council Canada, Canadian Neutron Beam Ctr, Chalk River Labs, Chalk River, ON K0J 1J0, Canada.
RI D'Elia, Francesco/K-2229-2016
FU AUT021 Network of Centres of Excellence; Natural Sciences and Research
   Council of Canada (NSERC); Department of Energy, Office of Energy
   Efficiency and Renewable Energy; Scientific User Facilities Division;
   Office of Basic Energy Sciences, U.S. Department of Energy; CNBC; NRC
   Canada, under NSERC
FX The authors are grateful to AUT021 Network of Centres of Excellence and
   the Natural Sciences and Research Council of Canada (NSERC) for their
   financial support. Studies at the 2nd Generation Neutron Residual Stress
   Mapping Facility at the High Flux Isotope Reactor was partially
   sponsored by the Department of Energy, Office of Energy Efficiency and
   Renewable Energy, Vehicle Technologies Program, through the Oak Ridge
   National Laboratory's High Temperature Materials Laboratory User Program
   and by the Scientific User Facilities Division, Office of Basic Energy
   Sciences, U.S. Department of Energy. Neutron stress analysis was
   completed at CNBC, NRC Canada, under the grant of NSERC. Further, the
   authors are thankful to Nemak Canada and the members of the Centre for
   Near-Net-Shape Processing of Materials at Ryerson University.
NR 11
TC 0
Z9 0
U1 1
U2 3
PU JOHN WILEY & SONS
PI CHICHESTER
PA THE ATRIUM, SOUTHERN GATE, CHICHESTER, W SUSSEX PO  19 8SQ, ENGLAND
BN 978-1-11802-946-6
PY 2011
BP 299
EP 308
PG 10
WC Materials Science, Multidisciplinary
SC Materials Science
GA BHY36
UT WOS:000327013200037
ER

PT J
AU Biner, SB
   Kubin, LP
AF Biner, S. B.
   Kubin, L. P.
GP TMS
TI TRUNCATED DISLOCATION SOURCES IN NANOMETRIC ALUMINUM CRYSTALS: A
   MOLECULAR DYNAMICS STUDY
SO TMS2011 SUPPLEMENTAL PROCEEDINGS, VOL 2: MATERIALS FABRICATION,
   PROPERTIES, CHARACTERIZATION, AND MODELING
LA English
DT Proceedings Paper
CT TMS 140th Annual Meeting and Exhibition
CY FEB 27-MAR 03, 2011
CL San Diego, CA
SP TMS
DE Twinning; cross-slip; stacking fault; partial dislocations
ID MECHANICAL-PROPERTIES; SINGLE-CRYSTALS; SIZE DEPENDENCE; YIELD STRENGTH;
   MICRO-PILLARS; PLASTICITY; SCALE; METALS; GOLD; COMPRESSION
AB In this study, the evolution of dislocation loops truncated by free surfaces in small finite volumes is investigated in aluminum using molecular dynamics simulations. Three types of truncated dislocation loops, U-shaped, C-shaped and L-shaped, are considered. In the absence of truncated dislocation loops and without applied stress, surface effects induce the formation of very large stress gradients, of the order of several GPa's. Under an applied shear strain, the evolution of the truncated loops reveals the occurrence of several major phenomena. Very large stacking faults were formed during motion of the partial dislocations and the development of full and helix dislocations were observed. In addition, cross-slip behavior by the Fleischer mechanism, twin formation and untwinning were identified.
C1 [Biner, S. B.] Idaho Natl Lab, Fuel Modeling & Simulat, POB 1625, Idaho Falls, ID 83415 USA.
   [Kubin, L. P.] Off Natl Etud & Rech Aerosp, CNRS, LEM, F-92322 Chatillon, France.
RP Biner, SB (reprint author), Idaho Natl Lab, Fuel Modeling & Simulat, POB 1625, Idaho Falls, ID 83415 USA.
FU DOE-Basic Energy Sciences [DE-AC0207CH11358]
FX Part of this work was initiated by one author (S.B.B.) at Ames
   Laboratory and was supported by DOE-Basic Energy Sciences under Contract
   No. DE-AC0207CH11358.
NR 41
TC 0
Z9 0
U1 0
U2 1
PU JOHN WILEY & SONS
PI CHICHESTER
PA THE ATRIUM, SOUTHERN GATE, CHICHESTER, W SUSSEX PO  19 8SQ, ENGLAND
BN 978-1-11802-946-6
PY 2011
BP 505
EP 512
PG 8
WC Materials Science, Multidisciplinary
SC Materials Science
GA BHY36
UT WOS:000327013200062
ER

PT J
AU Xu, D
   Ritchie, RO
AF Xu, David
   Ritchie, Robert O.
GP TMS
TI Role of Austenite Plasticity in the Deformation of Superelastic Nitinol
SO TMS2011 SUPPLEMENTAL PROCEEDINGS, VOL 2: MATERIALS FABRICATION,
   PROPERTIES, CHARACTERIZATION, AND MODELING
LA English
DT Proceedings Paper
CT TMS 140th Annual Meeting and Exhibition
CY FEB 27-MAR 03, 2011
CL San Diego, CA
SP TMS
DE Nitinol; superelastic; austenite; martensite; deformation
ID TRANSFORMATION; BEHAVIOR; ALLOY
AB Nitinol is a Ni-Ti shape-memory alloy which is important for biomedical implant applications due to its mechanical property of superelastically. It derives this property (of up to similar to 10% reversible deformation) from an in situ stress-induced martensitic transformation between its austenite and martensite phases. This transformation is traditionally assumed to be the major source of strain below similar to 8%, and occurs when local strain within the austenite phase exceeds similar to 1.2%. In this work, we used synchrotron x-ray micro-diffraction to examine the grain-by-grain source of the deformation during the in situ phase transformation of NiTi tensile ("dogbone") samples loaded in the x-ray beam. Although most individual austenite grains were observed to transform to martensite at local strains exceeding 1.2%, we found that numerous austenite grains remained untransformed at strains above this level. Although this effect can be due to grain orientation, we believe that it is also associated with specific austenite grains becoming locally plastically deformed instead of transforming, i.e., that the martensite transformation is not the sole contribution to the strain below similar to 8%. We consider this notion of local austenite plasticity to be a feasible explanation for the limits to the reversibility of transformation during the cyclic loading of NiTi.
C1 [Xu, David] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Sci Mat, Berkeley, CA 94720 USA.
   Univ Calif Berkeley, Dept Mat Sci & Engn, Div Sci Mat, Berkeley, CA 94720 USA.
RP Xu, D (reprint author), Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Sci Mat, Berkeley, CA 94720 USA.
FU U.S. Department of Energy [DE-AC02-05CH11231]
FX This work was supported by the Director, Office of Science, Office of
   Basic Energy Sciences, Division of Materials Sciences and Engineering,
   of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
   The authors wish to thank Drs. Scott W. Robertson, and Alan R. Pelton
   (Nitinol Devices & Components) and Apurva Metha (Stanford Synchrotron
   Radiation Laboratory), for their role in the synchrotron measurements
   and for numerous helpful discussions.
NR 5
TC 0
Z9 0
U1 0
U2 0
PU JOHN WILEY & SONS
PI CHICHESTER
PA THE ATRIUM, SOUTHERN GATE, CHICHESTER, W SUSSEX PO  19 8SQ, ENGLAND
BN 978-1-11802-946-6
PY 2011
BP 609
EP 616
PG 8
WC Materials Science, Multidisciplinary
SC Materials Science
GA BHY36
UT WOS:000327013200074
ER

PT S
AU Dillard, SE
   Thoma, D
   Hamann, B
AF Dillard, Scott E.
   Thoma, Dan
   Hamann, Bernd
BE Pascucci, V
   Tricoche, X
   Hagen, H
   Tierny, J
TI Reconstructing Cell Complexes From Cross-sections
SO TOPOLOGICAL METHODS IN DATA ANALYSIS AND VISUALIZATION: THEORY,
   ALGORITHMS, AND APPLICATIONS
SE Mathematics and Visualization
LA English
DT Proceedings Paper
CT 3rd Workshop on Topological Methods in Data Analysis and Visualization
CY FEB 23-24, 2009
CL Snowbird, UT
SP Univ Utah, Sci Comp Imag Inst, Tech Univ Kaiserslautern, Enabl Technologies, SciDAC Visualizat Anal Ctr, NVIDIA Corp
ID MODELS
AB Many interesting segmentations take the form of cell complexes. We present a method to infer a 3D cell complex from of a series of 2D cross-sections. We restrict our attention to the class of complexes whose duals resemble triangulations. This class includes microstructures of polycrystalline materials, as well as other cellular structures found in nature. Given a prescribed matching of 2D cells in adjacent cross-sections we produce a 3D complex spanning these sections such that matched 2-cells are contained in the interior of the same 3-cell. The reconstruction method considers only the topological structure of the input. After an initial 3D complex is recovered, the structure is altered to accommodate geometric properties of the dataset. We evaluate the method using ideal, synthetic datasets as well as serial-sectioned micrographs from a sample of tantalum metal.
C1 [Dillard, Scott E.; Thoma, Dan] Los Alamos Natl Lab, Mat Design Inst, Los Alamos, NM 87545 USA.
RP Dillard, SE (reprint author), Los Alamos Natl Lab, Mat Design Inst, Los Alamos, NM 87545 USA.
NR 6
TC 0
Z9 0
U1 1
U2 1
PU SPRINGER-VERLAG BERLIN
PI BERLIN
PA HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY
SN 1612-3786
BN 978-3-642-15013-5
J9 MATH VIS
PY 2011
BP 43
EP 54
PG 12
WC Mathematics, Applied; Mathematics
SC Mathematics
GA BGI39
UT WOS:000323090600004
ER

PT S
AU Mascarenhas, A
   Grout, RW
   Bremer, PT
   Hawkes, ER
   Pascucci, V
   Chen, JH
AF Mascarenhas, Ajith
   Grout, Ray W.
   Bremer, Peer-Timo
   Hawkes, Evatt R.
   Pascucci, Valerio
   Chen, Jacqueline H.
BE Pascucci, V
   Tricoche, X
   Hagen, H
   Tierny, J
TI Topological Feature Extraction for Comparison of Terascale Combustion
   Simulation Data
SO TOPOLOGICAL METHODS IN DATA ANALYSIS AND VISUALIZATION: THEORY,
   ALGORITHMS, AND APPLICATIONS
SE Mathematics and Visualization
LA English
DT Proceedings Paper
CT 3rd Workshop on Topological Methods in Data Analysis and Visualization
CY FEB 23-24, 2009
CL Snowbird, UT
SP Univ Utah, Sci Comp Imag Inst, Tech Univ Kaiserslautern, Enabl Technologies, SciDAC Visualizat Anal Ctr, NVIDIA Corp
ID 3-DIMENSIONAL SCALAR FUNCTIONS; MORSE-SMALE COMPLEXES; TURBULENT
   COMBUSTION; JET FLAMES; FIELD
AB We describe a combinatorial streaming algorithm to extract features which identify regions of local intense rates of mixing in two terascale turbulent combustion simulations. Our algorithm allows simulation data comprised of scalar fields represented on 728x896x512 or 2025x1600x400 grids to be processed on a single relatively lightweight machine. The turbulence-induced mixing governs the rate of reaction and hence is of principal interest in these combustion simulations. We use our feature extraction algorithm to compare two very different simulations and find that in both the thickness of the extracted features grows with decreasing turbulence intensity. Simultaneous consideration of results of applying the algorithm to the HO2 mass fraction field indicates that autoignition kernels near the base of a lifted flame tend not to overlap with the high mixing rate regions.
C1 [Mascarenhas, Ajith; Grout, Ray W.; Chen, Jacqueline H.] Sandia Natl Labs, Livermore, CA 94550 USA.
RP Mascarenhas, A (reprint author), Sandia Natl Labs, Livermore, CA 94550 USA.
RI Hawkes, Evatt/C-5307-2012
OI Hawkes, Evatt/0000-0003-0539-7951
NR 21
TC 8
Z9 8
U1 0
U2 0
PU SPRINGER-VERLAG BERLIN
PI BERLIN
PA HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY
SN 1612-3786
BN 978-3-642-15013-5
J9 MATH VIS
PY 2011
BP 229
EP 240
PG 12
WC Mathematics, Applied; Mathematics
SC Mathematics
GA BGI39
UT WOS:000323090600019
ER

PT S
AU Weber, G
   Bremer, PT
   Day, M
   Bell, J
   Pascucci, V
AF Weber, Gunther
   Bremer, Peer-Timo
   Day, Marcus
   Bell, John
   Pascucci, Valerio
BE Pascucci, V
   Tricoche, X
   Hagen, H
   Tierny, J
TI Feature Tracking Using Reeb Graphs
SO TOPOLOGICAL METHODS IN DATA ANALYSIS AND VISUALIZATION: THEORY,
   ALGORITHMS, AND APPLICATIONS
SE Mathematics and Visualization
LA English
DT Proceedings Paper
CT 3rd Workshop on Topological Methods in Data Analysis and Visualization
CY FEB 23-24, 2009
CL Snowbird, UT
SP Univ Utah, Sci Comp Imag Inst, Tech Univ Kaiserslautern, Enabl Technologies, SciDAC Visualizat Anal Ctr, NVIDIA Corp
DE Topological data analysis; Feature tracking; Combustion simulation; Reeb
   graph; Tracking graph; Tracking accuracy
AB Tracking features and exploring their temporal dynamics can aid scientists in identifying interesting time intervals in a simulation and serve as basis for performing quantitative analyses of temporal phenomena. In this paper, we develop a novel approach for tracking subsets of isosurfaces, such as burning regions in simulated flames, which are defined as areas of high fuel consumption on a temperature isosurface. Tracking such regions as they merge and split over time can provide important insights into the impact of turbulence on the combustion process. However, the convoluted nature of the temperature isosurface and its rapid movement make this analysis particularly challenging.
   Our approach tracks burning regions by extracting a temperature isovolume from the four-dimensional space-time temperature field. It then obtains isosurfaces for the original simulation time steps and labels individual connected "burning" regions based on the local fuel consumption value. Based on this information, a boundary surface between burning and non-burning regions is constructed. The Reeb graph of this boundary surface is the tracking graph for burning regions.
C1 [Weber, Gunther; Day, Marcus; Bell, John] Lawrence Berkeley Natl Lab, Berkeley, CA USA.
RP Weber, G (reprint author), Lawrence Berkeley Natl Lab, Berkeley, CA USA.
EM GHWeber@lbl.gov; ptbremer@llnl.gov; MSDay@lbl.gov; JBBell@lbl.gov;
   pascucci@sci.utah.edu
NR 19
TC 9
Z9 9
U1 0
U2 1
PU SPRINGER-VERLAG BERLIN
PI BERLIN
PA HEIDELBERGER PLATZ 3, D-14197 BERLIN, GERMANY
SN 1612-3786
BN 978-3-642-15013-5
J9 MATH VIS
PY 2011
BP 241
EP 253
PG 13
WC Mathematics, Applied; Mathematics
SC Mathematics
GA BGI39
UT WOS:000323090600020
ER

PT J
AU Carney, EW
   Tornesi, B
   Liberacki, AB
   Markham, DA
   Weitz, KK
   Luders, TM
   Studniski, KG
   Blessing, JC
   Gies, RA
   Corley, RA
AF Carney, Edward W.
   Tornesi, Belen
   Liberacki, Ashley B.
   Markham, Daniel A.
   Weitz, Karl K.
   Luders, Teressa M.
   Studniski, Kristine G.
   Blessing, John C.
   Gies, Richard A.
   Corley, Richard A.
TI The Impact of Dose Rate on Ethylene Glycol Developmental Toxicity and
   Pharmacokinetics in Pregnant CD Rats
SO TOXICOLOGICAL SCIENCES
LA English
DT Article
DE toxicokinetics; teratogenicity; human relevance; developmental
   pharmacokinetics
ID WHOLE-EMBRYO CULTURE; SPRAGUE-DAWLEY RATS; IN-VITRO; PLASMA DISPOSITION;
   WEAK ACIDS; MICE; PENETRATION; METABOLITES; EXPOSURE; AEROSOL
AB High-dose bolus exposure of rats to ethylene glycol (EG) causes developmental toxicity mediated by a metabolite, glycolic acid (GA), whose levels increase disproportionately when its metabolism is saturated. However, low-level exposures that do not saturate GA metabolism have a low potential for developmental effects. Toward the goal of developing EG risk assessments based on internal dose metrics, this study examined the differences between fast (bolus) and slow (continuous infusion) dose-rate exposures to EG on developmental outcome and pharmacokinetics. Time-mated female CD rats received sc bolus injections of 0, 1000, or 2000 mg/kg/day of EG on gestation day (GD) 6-15 once daily, whereas three corresponding groups were given the same daily doses as an infusion administered continuously from GD 6-15 via an sc implantable pump. In the sc bolus groups, increases in 11 fetal malformations (major defects) and 12 variations (minor alterations) were seen at the 2000 mg/kg/day dose level, whereas increases in 2 malformations and 2 variations occurred at 1000 mg/kg/day. In contrast, equivalent daily doses of EG given slowly via infusion did not cause any developmental effects. A pharmacokinetics time course was then conducted to compare GD 11-12 kinetics from oral bolus (gavage) exposure versus sc infusion of EG. Although dose rate had a modest impact (8- to 11-fold difference) on peak EG levels, peak levels of GA in maternal blood, kidney, embryo, and exocoelomic fluid were 59, 100, 49, and 56 times higher, respectively, following gavage versus the same dose given by infusion. These data illustrate how high-dose bolus exposure to EG causes a dramatic shift to nonlinear GA kinetics, an event which is highly unlikely to occur following exposures to humans associated with consumer and worker uses.
C1 [Carney, Edward W.; Tornesi, Belen; Liberacki, Ashley B.; Markham, Daniel A.] Dow Chem Co USA, Toxicol & Environm Res & Consulting, Midland, MI 48674 USA.
   [Blessing, John C.] Pacific NW Natl Lab, Mol Biosci Dept, Richland, WA 99352 USA.
RP Carney, EW (reprint author), Dow Chem Co USA, Toxicol & Environm Res & Consulting, 1803 Bldg, Midland, MI 48674 USA.
EM ecarney@dow.com
FU Ethylene Glycol Panel of The American Chemistry Council, Arlington, VA
FX Funding for this study was provided by the Ethylene Glycol Panel of The
   American Chemistry Council, Arlington, VA.
NR 35
TC 2
Z9 2
U1 1
U2 9
PU OXFORD UNIV PRESS
PI OXFORD
PA GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
SN 1096-6080
J9 TOXICOL SCI
JI Toxicol. Sci.
PD JAN
PY 2011
VL 119
IS 1
BP 178
EP 188
DI 10.1093/toxsci/kfq310
PG 11
WC Toxicology
SC Toxicology
GA 701TD
UT WOS:000285845400017
PM 20952502
ER

PT J
AU Brandizzi, F
AF Brandizzi, Federica
TI Is There a COPII-Mediated Membrane Traffic in Chloroplasts?
SO TRAFFIC
LA English
DT Article
DE chloroplasts; COPII proteins; ER-to-Golgi protein transport; Sar1
ID GTP-BINDING PROTEIN; ENDOPLASMIC-RETICULUM; ESCHERICHIA-COLI;
   GOLGI-APPARATUS; EXPORT SITES; CELLS; TRANSPORT; COAT; DYNAMICS; TOBACCO
AB COPII proteins facilitate membrane transport from the endoplasmic reticulum (ER) to the Golgi. They are highly conserved, although there are variations in their subcellular localization across plant, animal and yeast cells. Such variations may be needed to suit the unique organization of the ER and Golgi in the different cell systems. Earlier bioinformatics analyses have indicated that the Arabidopsis nuclear genome may encode chloroplast isoforms of the cytosolic trafficking protein machineries, including COPI and COPII, for vesicular transport within chloroplasts. These analyses suggest the intriguing possibility that plants may have evolved or adapted COP-like proteins to suit membrane trafficking events within specialized organelles. Here, we discuss recent data on the distribution and activity of the product of the At5g18570 locus, which encodes a putative chloroplast isoform of Sar1, the GTPase that regulates COPII assembly on the surface of the ER. Evidence is accumulating that the protein is targeted to the chloroplasts, that it has GTPase activity and that it may have a role in thylakoid membrane development, supporting the possibility that COPII-like trafficking machinery may be active in chloroplasts.
C1 Michigan State Univ, DOE Plant Res Lab, E Lansing, MI 48824 USA.
RP Brandizzi, F (reprint author), Michigan State Univ, DOE Plant Res Lab, E Lansing, MI 48824 USA.
EM fb@msu.edu
FU National Science Foundation [MCB 0948584]; Chemical Sciences,
   Geosciences and Biosciences Division, Office of Basic Energy Sciences,
   Office of Science, U.S. Department of Energy [DE-FG02-91ER20021]
FX Support by the Chemical Sciences, Geosciences and Biosciences Division,
   Office of Basic Energy Sciences, Office of Science, U.S. Department of
   Energy (award number DE-FG02-91ER20021) and National Science Foundation
   (MCB 0948584) is acknowledged. Ramu Subramanian Saravanan and Sarabjeet
   Singh are thanked for their technical help in the preparation of Figure
   1.
NR 24
TC 4
Z9 4
U1 1
U2 6
PU WILEY-BLACKWELL PUBLISHING, INC
PI MALDEN
PA COMMERCE PLACE, 350 MAIN ST, MALDEN 02148, MA USA
SN 1398-9219
J9 TRAFFIC
JI Traffic
PD JAN
PY 2011
VL 12
IS 1
BP 9
EP 11
DI 10.1111/j.1600-0854.2010.01129.x
PG 3
WC Cell Biology
SC Cell Biology
GA 693ED
UT WOS:000285206500002
PM 21040296
ER

PT J
AU Geist, DR
   Deng, ZQ
   Mueller, RP
   Cullinan, V
   Brink, S
   Chandler, JA
AF Geist, David R.
   Deng, Zhiqun
   Mueller, Robert P.
   Cullinan, Valerie
   Brink, Steven
   Chandler, James A.
TI The Effect of Fluctuating Temperatures and Ration Levels on the Growth
   of Juvenile Snake River Fall Chinook Salmon
SO TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY
LA English
DT Article
ID WATER TEMPERATURE; ONCORHYNCHUS-KISUTCH; PREDATOR AVOIDANCE; STEELHEAD
   TROUT; SOCKEYE SALMON; GAIRDNERI; FISH; TSHAWYTSCHA; INFECTIONS;
   CONSTANT
AB Determining the fate of juvenile fish that are exposed to elevated temperatures is complicated by the fact that the optimum temperature for the growth and survival of salmonids decreases as the amount of food becomes restricted. In this study, naturally produced juvenile Snake River fall Chinook salmon Oncorhynchus tshawytscha were fed daily ration levels of 1, 4, or 8% of their body weight and exposed to either constant temperatures (10-14 degrees C) or fluctuating temperatures that mimicked the heating rate (1.5 degrees C/h) and maximum daily temperatures (19-23 degrees C) of entrapment pools that form along the shoreline downstream of Hells Canyon Dam when river flows are altered to meet electric power demand. The survival rate for all groups was 99.9%, and there was no evidence that juvenile fall Chinook salmon fed reduced rations and exposed to constant temperatures grew to a greater extent than juvenile fall Chinook salmon exposed to fluctuating temperatures. The only exception was with the 1% ration level in which juvenile fall Chinook salmon that were exposed to a constant 10 degrees C added more weight over the 14-d exposure period (1% of body weight per day [WT/d]) than fish exposed to temperatures that fluctuated from 10 degrees C to 19.0 degrees C (0.3% WT/d) and from 10 degrees C to 22 degrees C daily (0% WT/d). We conclude that the lack of difference in growth rates between the fluctuating and constant temperature regimes at daily ration levels of at least 4% stems from the facts that the rate of temperature change in this study was within the acclimation range for growth, the daily average temperatures were less than thermal optimum values, and the temperature amplitudes were within lethal limits.
C1 [Geist, David R.; Deng, Zhiqun; Mueller, Robert P.] Battelle Pacific NW Div, Earth Syst Sci Div, Richland, WA 99352 USA.
   [Cullinan, Valerie] Battelle Pacific NW Div, Marine Sci Lab, Sequim, WA 98382 USA.
   [Brink, Steven; Chandler, James A.] Idaho Power Co, Boise, ID 83707 USA.
RP Geist, DR (reprint author), Battelle Pacific NW Div, Earth Syst Sci Div, POB 999, Richland, WA 99352 USA.
EM david.geist@pnl.gov
RI Deng, Daniel/A-9536-2011
OI Deng, Daniel/0000-0002-8300-8766
FU Idaho Power Company [56697A]; Battelle Memorial Institute
   [DE-AC05-76RL01830]
FX The authors thank Phil Groves and Brad Alcorn (Idaho Power Company) for
   catching the fish used in this study. Greg Gaulke and Chris Vernon
   (Battelle Memorial Institute) and Jennifer Monroe (Cascade Aquatics)
   were responsible for fish care. Chuck Coutant provided consultation on
   the study design and reviewed early versions of the manuscript. Andrea
   Currie (Battelle) was the technical editor and made substantial
   improvements to the document. Numerous other Battelle staff assisted on
   the study; we thank all of them very much for their support. Billy
   Connor and two anonymous reviewers improved the quality of this paper.
   This study was funded by Idaho Power Company under contract 56697A. The
   Pacific Northwest National Laboratory is owned by the U.S. Department of
   Energy and operated by Battelle Memorial Institute under contract
   DE-AC05-76RL01830.
NR 33
TC 4
Z9 4
U1 2
U2 13
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 520 CHESTNUT STREET, STE 850, PHILADELPHIA, PA 19106 USA
SN 0002-8487
EI 1548-8659
J9 T AM FISH SOC
JI Trans. Am. Fish. Soc.
PD JAN
PY 2011
VL 140
IS 1
BP 190
EP 200
AR PII 934601844
DI 10.1080/00028487.2011.556997
PG 11
WC Fisheries
SC Fisheries
GA 733RI
UT WOS:000288280100017
ER

PT J
AU Silin, D
   Tomutsa, L
   Benson, SM
   Patzek, TW
AF Silin, Dmitriy
   Tomutsa, Liviu
   Benson, Sally M.
   Patzek, Tad W.
TI Microtomography and Pore-Scale Modeling of Two-Phase Fluid Distribution
SO TRANSPORT IN POROUS MEDIA
LA English
DT Article
DE Capillary pressure; Microtomography; Pore-scale modeling; Two-phase flow
ID X-RAY MICROTOMOGRAPHY; POROUS-MEDIA; NETWORK MODEL; COMPUTED
   MICROTOMOGRAPHY; CAPILLARY-PRESSURE; DYNAMIC PROPERTIES; MULTIPHASE
   FLOW; CO2 INJECTION; PERMEABILITY; WETTABILITY
AB Synchrotron-based X-ray microtomography (micro CT) at the Advanced Light Source (ALS) line 8.3.2 at the Lawrence Berkeley National Laboratory produces three-dimensional micron-scale-resolution digital images of the pore space of the reservoir rock along with the spacial distribution of the fluids. Pore-scale visualization of carbon dioxide flooding experiments performed at a reservoir pressure demonstrates that the injected gas fills some pores and pore clusters, and entirely bypasses the others. Using 3D digital images of the pore space as input data, the method of maximal inscribed spheres (MIS) predicts two-phase fluid distribution in capillary equilibrium. Verification against the tomography images shows a good agreement between the computed fluid distribution in the pores and the experimental data. The model-predicted capillary pressure curves and tomography-based porosimetry distributions compared favorably with the mercury injection data. Thus, micro CT in combination with modeling based on the MIS is a viable approach to study the pore-scale mechanisms of CO2 injection into an aquifer, as well as more general multi-phase flows.
C1 [Silin, Dmitriy; Tomutsa, Liviu] Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA.
   [Benson, Sally M.] Stanford Univ, Energy Resources Engn Dept, Stanford, CA 94305 USA.
   [Patzek, Tad W.] Univ Texas Austin, Dept Petr & Geosyst Engn, Austin, TX 78712 USA.
RP Silin, D (reprint author), Lawrence Berkeley Natl Lab, 1 Cyclotron Rd,MS 90R1116, Berkeley, CA 94720 USA.
EM DSilin@lbl.gov
FU U.S. Department of Energy's Assistant Secretary for Coal through the
   Zero Emission Research and Technology under US Department of Energy
   [DE-AC02-05CH11231]; Office of Science, Office of Basic Energy Sciences,
   U.S. Department of Energy [DE-AC02-05CH11231]
FX This work was partially supported by the U.S. Department of Energy's
   Assistant Secretary for Coal through the Zero Emission Research and
   Technology Program under US Department of Energy contract no.
   DE-AC02-05CH11231 to Lawrence Berkeley National Laboratory. Part of this
   work has been done while the first author was visiting the Energy
   Resources Engineering Department at Stanford University. The hospitality
   of this department and the Global Climate and Energy Project is
   gratefully appreciated. The first author also acknowledges partial
   support from the Research Partnership to Secure Energy for America.
   Portions of this work were performed at the ALS, Lawrence Berkeley
   National Laboratory, which is supported by the Office of Science, Office
   of Basic Energy Sciences, U.S. Department of Energy, under Contract No.
   DE-AC02-05CH11231. Special Core Analysis Laboratories, Inc. conducted
   the mercury injection experiments mentioned in this study.
NR 57
TC 58
Z9 59
U1 4
U2 53
PU SPRINGER
PI NEW YORK
PA 233 SPRING ST, NEW YORK, NY 10013 USA
SN 0169-3913
EI 1573-1634
J9 TRANSPORT POROUS MED
JI Transp. Porous Media
PD JAN
PY 2011
VL 86
IS 2
BP 525
EP 545
DI 10.1007/s11242-010-9636-2
PG 21
WC Engineering, Chemical
SC Engineering
GA 715VT
UT WOS:000286918900012
ER

PT J
AU Benisti, D
   Morice, O
   Gremillet, L
   Strozzi, DJ
AF Benisti, Didier
   Morice, Olivier
   Gremillet, Laurent
   Strozzi, David J.
TI NONLINEAR ENVELOPE EQUATION AND NONLINEAR LANDAU DAMPING RATE FOR A
   DRIVEN ELECTRON PLASMA WAVE
SO TRANSPORT THEORY AND STATISTICAL PHYSICS
LA English
DT Article
ID OSCILLATIONS
AB In this article, we provide a theoretical description and calculate the nonlinear frequency shift, group velocity, and collionless damping rate, nu, of a driven electron plasma wave (EPW). All these quantities, whose physical content will be discussed, are identified as terms of an envelope equation allowing one to predict how efficiently an EPW may be externally driven. This envelope equation is derived directly from Gauss' law and from the investigation of the nonlinear electron motion, provided that the time and space rates of variation of the EPW amplitude, E-p, are small compared to the plasma frequency or the inverse of the Debye length. nu arises within the EPW envelope equation as a more complicated operator than a plain damping rate and may only be viewed as such because [nu(E-p)]/E-p remains nearly constant before abruptly dropping to zero. We provide a practical analytic formula for nu and show, without resorting to complex contour deformation, that in the limit E-p -> 0, nu is nothing but the Landau damping rate. We then term. the "nonlinear Landau damping rate" of the driven plasma wave. As for the nonlinear frequency shift of the driven EPW, it is also derived theoretically and found to assume values significantly different from previously published ones, which were obtained by assuming that the wave was freely propagating. Moreover, we find no limitation in k lambda(D), k being the plasma wavenumber and lambda(D) the Debye length, for a solution to the dispertion relation to exist, and want to stress here the importance of specifying how an EPW is generated to discuss its properties. Our theoretical predictions are in excellent agreement with results inferred from Vlasov simulations of stimulated Raman scattering (SRS), and an application of our theory to the study of SRS is presented.
C1 [Benisti, Didier; Morice, Olivier; Gremillet, Laurent] CEA, DAM, DIF, F-91297 Arpajon, France.
   [Strozzi, David J.] Lawrence Livermore Natl Lab, AX Div, Livermore, CA USA.
RP Benisti, D (reprint author), CEA, DAM, DIF, F-91297 Arpajon, France.
EM didier.benisti@cea.fr
OI Strozzi, David/0000-0001-8814-3791
NR 25
TC 4
Z9 4
U1 0
U2 2
PU TAYLOR & FRANCIS INC
PI PHILADELPHIA
PA 325 CHESTNUT ST, SUITE 800, PHILADELPHIA, PA 19106 USA
SN 0041-1450
J9 TRANSPORT THEOR STAT
JI Transport. Theor. Statist. Phys.
PY 2011
VL 40
IS 4
BP 185
EP 224
DI 10.1080/00411450.2011.604568
PG 40
WC Mathematics, Applied; Physics, Mathematical
SC Mathematics; Physics
GA 885NJ
UT WOS:000299785400002
ER

PT J
AU Henson, KM
   Goulias, KG
AF Henson, Kriste M.
   Goulias, Konstadinos G.
TI Travel Determinants and Multiscale Transferability of National Activity
   Patterns to Local Populations
SO TRANSPORTATION RESEARCH RECORD
LA English
DT Article
ID BEHAVIOR
AB The ability to transfer national travel patterns to a local population is of interest for modeling either large areas that exceed the boundaries of a metropolitan planning organization or small regions with no available travel survey data. At the core of this research are questions about the connection between travel behavior and land use, urban form, and accessibility. To explore this relationship, the researchers selected a group of land use variables to define activity and travel patterns for individuals and households. The 2001 National Household Travel Survey (NHTS) participants were divided into categories consisting of a set of latent cluster models representing persons, travel, and land use. This set was compared with two sets of cluster models constructed for two local travel surveys. Mean statistical tests were compared to assess differences among socio-demographic groups residing in localities with similar land uses. The results showed that the NHTS and the local surveys shared mean population activity and travel characteristics. However, these similarities masked behavioral heterogeneity, which was seen when distributions of activity and travel behavior were examined. Therefore, data from a national household travel survey in combination with land use data cannot be used to model local population travel characteristics if the goal is to model the behavioral distributions and not just mean travel behavior characteristics.
C1 [Henson, Kriste M.] Los Alamos Natl Lab, Decis Applicat Div, Los Alamos, NM 87545 USA.
   [Goulias, Konstadinos G.] Univ Calif Santa Barbara, Dept Geog, Santa Barbara, CA 93106 USA.
RP Henson, KM (reprint author), Los Alamos Natl Lab, Decis Applicat Div, POB 1663,MS F609, Los Alamos, NM 87545 USA.
EM kriste@lanl.gov
FU University of California; National Highway Institute of the Federal
   Highway Administration; University of California Transportation Center;
   National Science Foundation
FX This research was supported by the University of California Lab Fees
   Research Program, the National Highway Institute of the Federal Highway
   Administration's Dwight David Eisenhower Graduate Transportation
   Fellowship, the University of California Transportation Center's
   Doctoral Dissertation Research Grant, and the National Science
   Foundation's Doctoral Dissertation Research Grant in Geography and
   Regional Science.
NR 23
TC 0
Z9 0
U1 0
U2 0
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0361-1981
J9 TRANSPORT RES REC
JI Transp. Res. Record
PY 2011
IS 2231
BP 35
EP 43
DI 10.3141/2231-05
PG 9
WC Engineering, Civil; Transportation; Transportation Science & Technology
SC Engineering; Transportation
GA 865LR
UT WOS:000298312900006
ER

PT J
AU Lee, JD
   McGehee, DV
   Brown, JL
   Richard, CM
   Ahmad, O
   Ward, NJ
   Hallmark, S
   Lee, J
AF Lee, John D.
   McGehee, Daniel V.
   Brown, James L.
   Richard, Christian M.
   Ahmad, Omar
   Ward, Nicholas J.
   Hallmark, Shauna
   Lee, Joonbum
TI Matching Simulator Characteristics to Highway Design Problems
SO TRANSPORTATION RESEARCH RECORD
LA English
DT Article
ID DRIVING SIMULATOR; ROAD
AB Driving simulators hold much promise for addressing roadway design issues. However, although simulators have demonstrated their value in experimental research addressing driver performance, their ability to support road design projects has not been as clearly established. This paper describes a design-centered framework to make simulators valuable for traffic engineers and geometric designers. This framework includes several steps: (a) identification of design issues that would benefit from driving simulators, (h) identification of simulator characteristics to match them to design issues, and (c) translation of driver performance data from the simulator to traffic behavior on the road. Several critical obstacles inhibit application of simulators to highway design. First, driving safety researchers and engineers comprise separate communities and their perspectives on how simulators can be applied to address road design issues often diverge. This paper seeks to reduce this divergence and make simulators useful to highway engineers. Interviews with engineers revealed important issues that simulators could address, such as intersection and interchange design. Second, driving simulators are often broadly defined as high fidelity, which provides little value in matching simulators to design issues. A survey of simulators and simulator characteristics clarifies the meaning of simulator fidelity and links it to road design issues. Third, simulators often produce data that do not correspond to data collected by traffic engineers. This mismatch can result from inadequate simulator fidelity, but can also arise from more fundamental sources traffic engineers focus on traffic behavior and driving simulator researchers focus on driver behavior. Obstacles in using simulators for highway design reflect both technical and communication challenges.
C1 [Lee, John D.; Lee, Joonbum] Univ Wisconsin, Dept Ind & Syst Engn, Madison, WI 53706 USA.
   [McGehee, Daniel V.] Univ Iowa, Human Factors & Vehicle Safety Res Div, Publ Policy Ctr, Iowa City, IA 52242 USA.
   [Brown, James L.; Richard, Christian M.] Battelle Seattle Res Ctr, Ctr Human Performance & Safety, Seattle, WA 98109 USA.
   [Ward, Nicholas J.] Montana State Univ, Western Transportat Inst, Bozeman, MT 59717 USA.
   [Hallmark, Shauna] Iowa State Univ, Ctr Transportat Res & Educ, Ames, IA 50011 USA.
RP Lee, JD (reprint author), Univ Wisconsin, Dept Ind & Syst Engn, 1513 Univ Ave, Madison, WI 53706 USA.
EM jdlee@engr.wisc.edu
OI Lee, John/0000-0001-9808-2160
FU FHWA
FX This paper was made possible by funding from FHWA. Tom Granda, Chris
   Monk, John Molino, and Paul Tremont provided valuable contributions to
   the paper, particularly in soliciting information on design issues
   facing highway engineers.
NR 21
TC 4
Z9 4
U1 1
U2 8
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0361-1981
J9 TRANSPORT RES REC
JI Transp. Res. Record
PY 2011
IS 2248
BP 53
EP 60
DI 10.3141/2248-07
PG 8
WC Engineering, Civil; Transportation; Transportation Science & Technology
SC Engineering; Transportation
GA 875IL
UT WOS:000299023500007
ER

PT J
AU Peters, NE
   Bohlke, JK
   Brooks, PD
   Burt, TP
   Gooseff, MN
   Hamilton, DP
   Mulholland, PJ
   Roulet, NT
   Turner, JV
AF Peters, N. E.
   Boehlke, J. K.
   Brooks, P. D.
   Burt, T. P.
   Gooseff, M. N.
   Hamilton, D. P.
   Mulholland, P. J.
   Roulet, N. T.
   Turner, J. V.
BE Wilderer, P
TI Hydrology and Biogeochemistry Linkages
SO TREATISE ON WATER SCIENCE, VOL 2: THE SCIENCE OF HYDROLOGY
LA English
DT Article; Book Chapter
ID DISSOLVED ORGANIC-CARBON; ATMOSPHERIC NITROGEN DEPOSITION; TEMPERATE
   FOREST ECOSYSTEMS; CALIFORNIA REDWOOD FOREST; NORTHERN HARDWOOD FOREST;
   WATER-TABLE FLUCTUATIONS; EUROPEAN SURFACE WATERS; ATLANTIC
   COASTAL-PLAIN; GRADIENT TRACER TESTS; SOUTH-CENTRAL ONTARIO
C1 [Peters, N. E.] US Geol Survey, Atlanta, GA 30360 USA.
   [Boehlke, J. K.] US Geol Survey, Reston, VA 22092 USA.
   [Brooks, P. D.] Univ Arizona, Tucson, AZ USA.
   [Burt, T. P.] Univ Durham, Durham, England.
   [Gooseff, M. N.] Penn State Univ, University Pk, PA 16802 USA.
   [Hamilton, D. P.] Univ Waikato, Hamilton, New Zealand.
   [Mulholland, P. J.] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Roulet, N. T.] McGill Univ, Montreal, PQ, Canada.
   [Turner, J. V.] CSIRO Land & Water, Wembley, WA, Australia.
RP Peters, NE (reprint author), US Geol Survey, Atlanta, GA 30360 USA.
RI Gooseff, Michael/N-6087-2015
OI Gooseff, Michael/0000-0003-4322-8315
NR 429
TC 5
Z9 5
U1 3
U2 6
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA SARA BURGERHARTSTRAAT 25, PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
BN 978-0-444-53199-5
PY 2011
BP 271
EP 304
PG 34
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA BA2FH
UT WOS:000333356000012
ER

PT J
AU Hubbard, SS
   Linde, N
AF Hubbard, S. S.
   Linde, N.
BE Wilderer, P
TI Hydrogeophysics
SO TREATISE ON WATER SCIENCE, VOL 2: THE SCIENCE OF HYDROLOGY
LA English
DT Article; Book Chapter
ID GROUND-PENETRATING-RADAR; ELECTRICAL-RESISTIVITY TOMOGRAPHY; BACTERIAL
   TRANSPORT SITE; WAVE-FORM INVERSION; SOIL-WATER CONTENT; HYDRAULIC
   CONDUCTIVITY; FIELD-SCALE; POROUS-MEDIA; DC RESISTIVITY; INDUCED
   POLARIZATION
C1 [Hubbard, S. S.] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA.
   [Linde, N.] Univ Lausanne, Lausanne, Switzerland.
RP Hubbard, SS (reprint author), Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA.
RI Linde, Niklas/A-9440-2008; Hubbard, Susan/E-9508-2010
OI Linde, Niklas/0000-0003-1613-353X; 
NR 200
TC 20
Z9 20
U1 0
U2 5
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA SARA BURGERHARTSTRAAT 25, PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
BN 978-0-444-53199-5
PY 2011
BP 401
EP 434
PG 34
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA BA2FH
UT WOS:000333356000016
ER

PT J
AU Grimaldi, S
   Kao, SC
   Castellarin, A
   Papalexiou, SM
   Viglione, A
   Laio, F
   Aksoy, H
   Gedikli, A
AF Grimaldi, S.
   Kao, S-C
   Castellarin, A.
   Papalexiou, S-M
   Viglione, A.
   Laio, F.
   Aksoy, H.
   Gedikli, A.
BE Wilderer, P
TI Statistical Hydrology
SO TREATISE ON WATER SCIENCE, VOL 2: THE SCIENCE OF HYDROLOGY
LA English
DT Article; Book Chapter
ID FLOOD FREQUENCY-ANALYSIS; GOODNESS-OF-FIT; PARTIAL-DURATION SERIES;
   ANNUAL MAXIMUM SERIES; PEARSON TYPE-3 DISTRIBUTION; HYDROMETEOROLOGICAL
   TIME-SERIES; PRECIPITATION ANNUAL MAXIMA; GUMBEL-HOUGAARD COPULA;
   RAINFALL INTENSITY; PROBABILITY-DISTRIBUTION
C1 [Grimaldi, S.] Univ Tuscia, Viterbo, Italy.
   [Kao, S-C] Oak Ridge Natl Lab, Oak Ridge, TN USA.
   [Castellarin, A.] Univ Bologna, Bologna, Italy.
   [Papalexiou, S-M] Natl Tech Univ Athens, Zografos, Greece.
   [Viglione, A.] Vienna Univ Technol, A-1060 Vienna, Austria.
   [Laio, F.] Politecn Torino, Turin, Italy.
   [Aksoy, H.; Gedikli, A.] Istanbul Tech Univ, TR-80626 Istanbul, Turkey.
RP Grimaldi, S (reprint author), Univ Tuscia, Viterbo, Italy.
NR 250
TC 6
Z9 6
U1 0
U2 3
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA SARA BURGERHARTSTRAAT 25, PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
BN 978-0-444-53199-5
PY 2011
BP 479
EP 517
PG 39
WC Geosciences, Multidisciplinary; Water Resources
SC Geology; Water Resources
GA BA2FH
UT WOS:000333356000019
ER

PT J
AU Volkow, ND
   Wang, GJ
   Baler, RD
AF Volkow, Nora D.
   Wang, Gene-Jack
   Baler, Ruben D.
TI Reward, dopamine and the control of food intake: implications for
   obesity
SO TRENDS IN COGNITIVE SCIENCES
LA English
DT Review
ID BODY-MASS INDEX; ORBITOFRONTAL-CORTEX; ENDOCANNABINOID SYSTEM; EATING
   BEHAVIOR; ENERGY-BALANCE; PROBABILISTIC REINFORCEMENT;
   NUCLEUS-ACCUMBENS; FEEDING-BEHAVIOR; DORSAL STRIATUM; BRAIN STRUCTURE
AB The ability to resist the urge to eat requires the proper functioning of neuronal circuits involved in top-down control to oppose the conditioned responses that predict reward from eating the food and the desire to eat the food. Imaging studies show that obese subjects might have impairments in dopaminergic pathways that regulate neuronal systems associated with reward sensitivity, conditioning and control. It is known that the neuropeptides that regulate energy balance (homeostatic processes) through the hypothalamus also modulate the activity of dopamine cells and their projections into regions involved in the rewarding processes underlying food intake. It is postulated that this could also be a mechanism by which overeating and the resultant resistance to homoeostatic signals impairs the function of circuits involved in reward sensitivity, conditioning and cognitive control.
C1 [Volkow, Nora D.; Baler, Ruben D.] Natl Inst Drug Abuse, NIH, Bethesda, MD 20892 USA.
   [Wang, Gene-Jack] Brookhaven Natl Lab, Dept Med, Upton, NY 11973 USA.
RP Volkow, ND (reprint author), Natl Inst Drug Abuse, NIH, Bethesda, MD 20892 USA.
EM nvolkow@nida.nih.gov
FU Intramural NIH HHS [ZIA AA000550-07]
NR 106
TC 298
Z9 305
U1 16
U2 100
PU ELSEVIER SCIENCE LONDON
PI LONDON
PA 84 THEOBALDS RD, LONDON WC1X 8RR, ENGLAND
SN 1364-6613
J9 TRENDS COGN SCI
JI TRENDS COGN. SCI.
PD JAN
PY 2011
VL 15
IS 1
BP 37
EP 46
DI 10.1016/j.tics.2010.11.001
PG 10
WC Behavioral Sciences; Neurosciences; Psychology, Experimental
SC Behavioral Sciences; Neurosciences & Neurology; Psychology
GA 715FH
UT WOS:000286865500006
PM 21109477
ER

PT B
AU Menon, S
   Kerstein, AR
AF Menon, Suresh
   Kerstein, Alan R.
BE Echekki, T
   Mastorakos, E
TI The Linear-Eddy Model
SO TURBULENT COMBUSTION MODELING: ADVANCES, NEW TRENDS AND PERSPECTIVES
SE Fluid Mechanics and Its Applications
LA English
DT Article; Book Chapter
ID ARTIFICIAL NEURAL-NETWORKS; DIFFERENTIAL MOLECULAR-DIFFUSION; DIRECT
   NUMERICAL SIMULATIONS; HOMOGENEOUS TURBULENT-FLOW; DIRECT-INJECTION
   COMBUSTOR; NON-PREMIXED COMBUSTION; REACTION-ZONES REGIME; PLANE JET
   FLAMES; CHEMICAL-KINETICS; SCALAR STATISTICS
AB Regime-independent modeling is important for accurate simulation of the complex combustor designs needed to meet increasingly stringent performance requirements. One strategy for achieving robust yet affordable predictive capability is to resolve, in space and time, the relevant advection-diffusion-reaction couplings using a low-dimensional representation of turbulent advection. In the linear-eddy model (LEM), this is accomplished in one spatial dimension by introducing an instantaneous map, the 'triplet map,' that emulates the effect of an eddy turnover on property profiles along a notional line of sight. The map preserves the continuity of these profiles and obeys applicable conservation laws. Details and representative applications of the model are presented for passive and reactive scalar mixing, with emphasis on its use as a mixing-reaction closure for large-eddy simulation (LES) based on the embedding of an LEM domain in each LES control volume.
C1 [Menon, Suresh] Georgia Inst Technol, Sch Aerosp Engn, Atlanta, GA 30332 USA.
   [Kerstein, Alan R.] Sandia Natl Labs, Combust Res Facil, Livermore, CA USA.
RP Menon, S (reprint author), Georgia Inst Technol, Sch Aerosp Engn, Atlanta, GA 30332 USA.
EM suresh.menon@aerospace.gatech.edu; arkerst@sandia.gov
NR 79
TC 13
Z9 13
U1 0
U2 2
PU SPRINGER
PI DORDRECHT
PA PO BOX 17, 3300 AA DORDRECHT, NETHERLANDS
BN 978-94-007-0411-4
J9 FLUID MECH APPL
PY 2011
VL 95
BP 221
EP 247
DI 10.1007/978-94-007-0412-1_10
D2 10.1007/978-94-007-0412-1
PG 27
WC Computer Science, Theory & Methods; Engineering, Mechanical;
   Mathematics, Applied
SC Computer Science; Engineering; Mathematics
GA BSY44
UT WOS:000286131200010
ER

PT S
AU Prasankumar, RP
   Shenoi, RV
   Urayama, J
   Chow, WW
   Krishna, S
   Taylor, AJ
AF Prasankumar, R. P.
   Shenoi, R. V.
   Urayama, J.
   Chow, W. W.
   Krishna, S.
   Taylor, A. J.
BE Tsen, KT
   Song, JJ
   Betz, M
   Elezzabi, AY
TI Ultrafast density-and-temperature-dependent carrier dynamics in a
   quantum dots-in-a-well heterostructure
SO ULTRAFAST PHENOMENA IN SEMICONDUCTORS AND NANOSTRUCTURE MATERIALS XV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Ultrafast Phenomena in Semiconductors and Nanostructure
   Materials XV
CY JAN 23-26, 2011
CL San Francisco, CA
SP SPIE
DE Ultrafast dynamics; quantum dots; dots-in-a-well; ultrafast phenomena;
   semiconductor heterostructures
ID SEMICONDUCTOR NANOCRYSTALS; PHONON BOTTLENECK; RELAXATION; PERFORMANCE;
   DETECTOR; CAPTURE; DEVICES; LASERS; STATES
AB The incorporation of semiconductor quantum dots into different heterostructures for applications in nanoscale photodetection, lasing and amplification has been an active area of research in recent years. Here, we use ultrafast differential transmission spectroscopy to temporally and spectrally resolve density-and-temperature-dependent carrier dynamics in an InAs/InGaAs quantum dots-in-a-well (DWELL) heterostructure. In our experiments, electron-hole pairs are optically injected into the three dimensional GaAs barriers, after which we monitor carrier relaxation into the two dimensional InGaAs quantum wells and the zero dimensional InAs quantum dots by tuning the probe photon energy. We find that for low photoinjected carrier densities, carrier capture and relaxation are dominated by Auger carrier-carrier scattering at low temperatures, with thermal emission playing an increasing role with temperature. At low temperatures we also observe excitation-dependent shifts of the quantum dot energy levels. In contrast, high density measurements reveal an anomalous induced absorption at the quantum dot excited state that is correlated with quantum well population dynamics. Our experiments provide essential insight into carrier relaxation across multiple spatial dimensions and reveal unique Coulomb interaction-induced phenomena, with important implications for DWELL-based lasers and amplifiers.
C1 [Prasankumar, R. P.; Taylor, A. J.] Los Alamos Natl Lab, Ctr Integrated Nanotechnol, Los Alamos, NM 87545 USA.
RP Prasankumar, RP (reprint author), Los Alamos Natl Lab, Ctr Integrated Nanotechnol, POB 1663, Los Alamos, NM 87545 USA.
EM rpprasan@lanl.gov
NR 45
TC 0
Z9 0
U1 1
U2 2
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-8474-1
J9 PROC SPIE
PY 2011
VL 7937
AR 793707
DI 10.1117/12.872887
PG 12
WC Engineering, Electrical & Electronic; Nanoscience & Nanotechnology;
   Optics
SC Engineering; Science & Technology - Other Topics; Optics
GA BWD60
UT WOS:000293630900004
ER

PT J
AU Glaeser, RM
   McMullan, G
   Faruqi, AR
   Henderson, R
AF Glaeser, R. M.
   McMullan, G.
   Faruqi, A. R.
   Henderson, R.
TI Images of paraffin monolayer crystals with perfect contrast:
   Minimization of beam-induced specimen motion
SO ULTRAMICROSCOPY
LA English
DT Article
DE Tetratetracontane; 2D crystals; Beam-induced specimen motion; Radiation
   damage; Image contrast; Carbon support films; Medipix detector
ID TRANSMISSION ELECTRON-MICROSCOPY; RADIATION-DAMAGE; PHASE-CONTRAST;
   CRYOELECTRON MICROSCOPY; HIGH-RESOLUTION; CRYOMICROSCOPY; FILMS;
   TEMPERATURES; MICROGRAPHS; SUBSTRATE
AB Quantitative analysis of electron microscope images of organic and biological two-dimensional crystals has previously shown that the absolute contrast reached only a fraction of that expected theoretically from the electron diffraction amplitudes. The accepted explanation for this is that irradiation of the specimen causes beam-induced charging or movement, which in turn causes blurring of the image due to image or specimen movement. In this paper, we used three different approaches to try to overcome this image-blurring problem in monolayer crystals of paraffin. Our first approach was to use an extreme form of spotscan imaging, in which a single image was assembled on film by the successive illumination of up to 50,000 spots, each of a diameter of around 7 nm. The second approach was to use the Medipix II detector with its zero-noise readout to assemble a time-sliced series of images of the same area in which each frame from a movie with up to 400 frames had an exposure of only 500 electrons. In the third approach, we simply used a much thicker carbon support film to increase the physical strength and conductivity of the support. Surprisingly, the first two methods involving dose fractionation in space or time produced only partial improvements in contrast whereas the third approach produced many virtually perfect images, where the absolute contrast predicted from the electron diffraction amplitudes was observed in the images. We conclude that it is possible to obtain consistently almost perfect images of beam-sensitive specimens if they are attached to an appropriately strong and conductive support: however great care is needed in practice and the problem remains of how to best image ice-embedded biological structures in the absence of a strong, conductive support film. (C) 2010 Elsevier B.V. All rights reserved.
C1 [McMullan, G.; Faruqi, A. R.; Henderson, R.] MRC Lab Mol Biol, Cambridge CB2 0QH, England.
   [Glaeser, R. M.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
RP Henderson, R (reprint author), MRC Lab Mol Biol, Hills Road, Cambridge CB2 0QH, England.
EM rh15@mrc-lmb.cam.ac.uk
FU Medical Research Council, UK; US Department of Energy
   [DE-AC02-05CH11231]
FX We thank Shaoxia Chen for help with detector installation and electron
   microscope operation. This work was supported by funding from the
   Medical Research Council, UK and by the US Department of Energy under
   Contract DE-AC02-05CH11231, neither of whom influenced the design nor
   interpretation of the experiments. RMG prepared all the specimens and
   devised appropriate electron-optical conditions. RMG and RH carried out
   the electron microscopy. GM and RH carried out the data analysis. ARF
   installed the Medipix detector and developed it as a tool for electron
   microscopy.
NR 35
TC 30
Z9 30
U1 2
U2 17
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0304-3991
J9 ULTRAMICROSCOPY
JI Ultramicroscopy
PD JAN
PY 2011
VL 111
IS 2
BP 90
EP 100
DI 10.1016/j.ultramic.2010.10.010
PG 11
WC Microscopy
SC Microscopy
GA 710YF
UT WOS:000286552200002
PM 21185452
ER

PT B
AU Rugh, JP
   Bennion, K
   Brooker, A
   Langewisch, J
   Smith, K
   Meyer, J
AF Rugh, J. P.
   Bennion, K.
   Brooker, A.
   Langewisch, J.
   Smith, K.
   Meyer, J.
GP IMechE
TI PHEV/EV integrated vehicle thermal management - development of a KULI
   model to assess combined cooling loops
SO VEHICLE THERMAL MANAGEMENT SYSTEMS CONFERENCE AND EXHIBITION (VTMS 10)
LA English
DT Proceedings Paper
CT Conference on Vehicle Thermal Management Systems (VTMS)
CY MAY 15-19, 2011
CL Gaydon, ENGLAND
SP Inst Mech Engineers, Automobile Div, Inst Mech Engineers, Combust Engines & Fuels Grp, SAE Int
AB Electric drive vehicles (EDVs) must incorporate thermal management systems for powertrain-related subsystems, including the power electronics, electric motors, and energy storage system (ESS) as well as the passenger compartment. Multiple independent heating and cooling loops reduce the effectiveness of fuel-saving control strategies, increase weight and volume, and reduce all-electric range. Building on the National Renewable Energy Laboratory's (NREL's) extensive experience, integrated thermal management concepts in an overall vehicle context are being investigated. The initial results of the air conditioning (A/C), passenger compartment, and power electronics KULI models of an electric vehicle (EV) are described. Various concepts for combining the systems will be assessed and the performance compared to a baseline system.
C1 [Rugh, J. P.; Bennion, K.; Brooker, A.; Langewisch, J.; Smith, K.] Natl Renewable Energy Lab, Golden, CO 80401 USA.
   [Meyer, J.] Visteon, Grove City, OH USA.
RP Rugh, JP (reprint author), Natl Renewable Energy Lab, Golden, CO 80401 USA.
FU Vehicle Technologies Program of the U. S. Department of Energy's Office
   of Energy Efficiency and Renewable Energy
FX The authors gratefully acknowledge the support for this work provided by
   Lee Slezak, David Anderson, Susan Rogers, David Howell, and Patrick
   Davis in the Vehicle Technologies Program of the U. S. Department of
   Energy's Office of Energy Efficiency and Renewable Energy.
NR 13
TC 1
Z9 1
U1 0
U2 3
PU WOODHEAD PUBL LTD
PI CAMBRIDGE
PA ABINGTON HALL ABINGTON, CAMBRIDGE CB1 6AH, CAMBS, ENGLAND
BN 978-1-78063-048-9; 978-0-85709-172-7
PY 2011
BP 649
EP 660
PG 12
WC Engineering, Mechanical; Transportation Science & Technology
SC Engineering; Transportation
GA BB2XH
UT WOS:000342453400056
ER

PT J
AU Piccone, ME
   Segundo, FDS
   Kramer, E
   Rodriguez, LL
   de los Santos, T
AF Piccone, Maria E.
   Segundo, Fayna Diaz-San
   Kramer, Edward
   Rodriguez, Luis L.
   de los Santos, Teresa
TI Introduction of tag epitopes in the inter-AUG region of foot and mouth
   disease virus: Effect on the L protein
SO VIRUS RESEARCH
LA English
DT Article
DE Foot-and-mouth disease; Viral translation; Leader protein
ID TRANSLATION INITIATION SITES; LEADER PROTEINASE; PICORNAVIRUS IRESES; A
   VIRUS; RNA; GENE; CELLS; IDENTIFICATION; PURIFICATION; PARAMETERS
AB Foot-and-mouth disease virus (FMDV) initiates translation from two in-frame AUG codons producing two forms of the leader (L) proteinase, Lab (starting at the first AUG) and Lb (starting at second AUG). In a previous study, we have demonstrated that a cDNA-derived mutant FMDV (A24-L1123) containing a 57-nucleotide transposon (tn) insertion between the two AUG initiation codons (inter-AUG region) was completely attenuated in cattle, suggesting that this region is involved in viral pathogenesis. To investigate the potential role of the Lab protein in attenuation, we have introduced two epitope tags (Flag: DYKDDDK and HA: YPYDVPDYA) or a small tetracysteine motif (tc: CCGPCC) into the pA24-L1123 infectious DNA clone. Mutant viruses with a small plaque phenotype similar to the parental A24-L1123 were recovered after transfection of constructs encoding the Flag tag and the tc motif. However, expression of the Flag- or tc-tagged Lab protein was abolished or greatly diminished in these viruses. Interestingly, the A24-L1123/Flag virus acquired an extra base in the inter-AUG region that resulted in new AUG codons in-frame with the second AUG, and produced a larger Lb protein. This N terminal extension of the Lb protein in mutant A24-L1123/Flag did not affect virus viability or L functions in cell culture. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Piccone, Maria E.; Segundo, Fayna Diaz-San; Kramer, Edward; Rodriguez, Luis L.; de los Santos, Teresa] ARS, Plum Isl Anim Dis Ctr, USDA, Greenport, NY 11944 USA.
   [Piccone, Maria E.] Univ Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA.
   [Segundo, Fayna Diaz-San] PIADC Res Program, Oak Ridge Inst Sci & Educ, Oak Ridge, TN USA.
RP Piccone, ME (reprint author), ARS, Plum Isl Anim Dis Ctr, USDA, POB 848, Greenport, NY 11944 USA.
EM maria.piccone@ars.usda.gov
NR 44
TC 9
Z9 13
U1 1
U2 3
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-1702
J9 VIRUS RES
JI Virus Res.
PD JAN
PY 2011
VL 155
IS 1
BP 91
EP 97
DI 10.1016/j.virusres.2010.09.004
PG 7
WC Virology
SC Virology
GA 716YV
UT WOS:000287010300013
PM 20849893
ER

PT B
AU Greenbaum, E
   Evans, BR
AF Greenbaum, Elias
   Evans, Barbara R.
BE Dagnelie, G
TI Synthetic Chromophores and Neural Stimulation of the Visual System
SO VISUAL PROSTHETICS: PHYSIOLOGY, BIOENGINEERING, REHABILITATION
LA English
DT Article; Book Chapter
ID PHOTOSYNTHETIC REACTION CENTERS; OPTICAL CONTROL; PHOTOSYSTEM-I;
   GREEN-ALGAE; MAMMALIAN-CELLS; EXCITABLE CELLS; REMOTE-CONTROL; ION
   CHANNELS; DRAGON FISH; LIGHT
AB This chapter presents an overview of optical stimulation of neural cells by synthetic chromophores and their potential use in the field of artificial sight. The chromophores and techniques that are discussed include azo chromophores, photo release of caged neurotransmitters, pore blockers and photoisomerization, the channelrhodopsins, melanopsin, and the Photosystem I reaction center of green plants.
C1 [Greenbaum, Elias; Evans, Barbara R.] Oak Ridge Natl Lab, Oak Ridge, TN 37831 USA.
RP Greenbaum, E (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37831 USA.
EM greenbaum@ornl.gov; evansb@ornl.gov
NR 42
TC 1
Z9 1
U1 0
U2 0
PU SPRINGER
PI NEW YORK
PA 233 SPRING STREET, NEW YORK, NY 10013, UNITED STATES
BN 978-1-4419-0753-0
PY 2011
BP 193
EP 206
DI 10.1007/978-1-4419-0754-7_10
D2 10.1007/978-1-4419-0754-7
PG 14
WC Engineering, Biomedical; Neurosciences; Ophthalmology
SC Engineering; Neurosciences & Neurology; Ophthalmology
GA BTZ08
UT WOS:000288483800010
ER

PT J
AU Marra, JE
   Palmer, RA
AF Marra, John E.
   Palmer, Ronald A.
BE Letcher, TM
   Vallero, DA
TI Radioactive Waste Management
SO WASTE: A HANDBOOK FOR MANAGEMENT
LA English
DT Article; Book Chapter
C1 [Marra, John E.] Savannah River Natl Lab, Aiken, SC 29802 USA.
   [Palmer, Ronald A.] Mississippi State Univ, Inst Clean Energy Technol, Starkville, MS 39762 USA.
RP Marra, JE (reprint author), Savannah River Natl Lab, Aiken, SC 29802 USA.
NR 13
TC 1
Z9 1
U1 0
U2 0
PU ELSEVIER ACADEMIC PRESS INC
PI SAN DIEGO
PA 525 B STREET, SUITE 1900, SAN DIEGO, CA 92101-4495 USA
BN 978-0-12-381476-0
PY 2011
BP 101
EP 108
DI 10.1016/B978-0-12-381475-3.10007-5
PG 8
WC Engineering, Environmental
SC Engineering
GA BET35
UT WOS:000318016300009
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Waste Forms Technology and Performance FINAL REPORT Executive Summary
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Editorial Material; Book Chapter
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 1
EP 2
PG 2
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900002
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Waste Forms Technology and Performance FINAL REPORT Findings and
   Recommendations
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Article; Book Chapter
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 0
TC 0
Z9 0
U1 1
U2 1
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 3
EP 14
PG 12
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900003
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Waste Forms Technology and Performance FINAL REPORT Preface
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Editorial Material; Book Chapter
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP VII
EP VIII
PG 2
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900001
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Waste Forms Technology and Performance FINAL REPORT Background and Study
   Task
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Editorial Material; Book Chapter
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 23
TC 0
Z9 0
U1 1
U2 1
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 15
EP 28
PG 14
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900004
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Waste Forms
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Article; Book Chapter
ID IRON PHOSPHATE-GLASSES; LEVEL NUCLEAR-WASTE; DECAY-INDUCED
   AMORPHIZATION; SEPARATED PLUTONIUM STOCKS; MURATAITE-BASED CERAMICS;
   RICH TITANATE CERAMICS; X-RAY PHOTOELECTRON; RADIOACTIVE-WASTES; WEAPONS
   PLUTONIUM; TOXIC METALS
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 298
TC 0
Z9 0
U1 1
U2 4
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 29
EP 85
PG 57
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900005
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Waste Processing and Waste Form Production
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Article; Book Chapter
ID NUCLEAR-WASTE; IMMOBILIZATION; DISSOLUTION; FILMS
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 60
TC 0
Z9 0
U1 0
U2 0
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 87
EP 118
PG 32
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900006
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Waste Form Testing
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Article; Book Chapter
ID KINETIC CONSTRAINTS; GLASS DISSOLUTION; AQUEOUS-SOLUTIONS;
   REACTION-RATES; RATE LAW; MINERALS
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 58
TC 0
Z9 0
U1 0
U2 0
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 119
EP 152
PG 34
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900007
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Waste Forms and Disposal Environments
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Article; Book Chapter
ID NUCLEAR-FUEL; PLUTONIUM; WATER; FIELD; REPOSITORY; MIGRATION; TRANSPORT;
   BEHAVIOR; FATE; SOIL
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 35
TC 0
Z9 0
U1 0
U2 0
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 153
EP 174
PG 22
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900008
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Waste Form Performance in Disposal Systems
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Article; Book Chapter
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 36
TC 0
Z9 0
U1 0
U2 0
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 175
EP 195
PG 21
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900009
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Legal and Regulatory Factors for Waste Form Performance
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Article; Book Chapter
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 23
TC 0
Z9 0
U1 0
U2 0
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 197
EP 217
PG 21
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900010
ER

PT J
AU Levenson, M
   Ewing, R
AF Levenson, Milt
   Ewing, Rod
GP Natl Res Council
TI Possible Opportunities in Waste Form Science and Technology
SO WASTE FORMS TECHNOLOGY AND PERFORMANCE: FINAL REPORT
LA English
DT Article; Book Chapter
ID MESOPOROUS MOLECULAR-SIEVES; SELF-ASSEMBLED MONOLAYERS; NUCLEAR-WASTE;
   FULLERENE TOPOLOGIES; SILICATE MELTS; IMMOBILIZATION; DESIGN;
   SIMULATIONS; FRAMEWORKS; GLASSES
C1 [Levenson, Milt] Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
   [Levenson, Milt] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Levenson, Milt] Elect Power Res Inst, Palo Alto, CA USA.
   [Levenson, Milt] Bechtel, San Francisco, CA USA.
   [Levenson, Milt] Amer Nucl Soc, La Grange Pk, IL USA.
   [Levenson, Milt] Amer Inst Chem Engineers, New York, NY USA.
   [Levenson, Milt] Natl Acad Studies, Washington, DC USA.
   [Ewing, Rod] Univ Michigan, Dept Nucl Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Radiol Sci, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ Michigan, Dept Mat Sci & Engn, Geol Sci, Ann Arbor, MI 48109 USA.
   [Ewing, Rod] Univ New Mexico, Dept Earth & Planetary Sci, Albuquerque, NM 87131 USA.
   [Ewing, Rod] Amer Assoc Advancement Sci, Washington, DC USA.
   [Ewing, Rod] Geol Soc Amer, New York, NY USA.
   [Ewing, Rod] Mineral Soc Amer, New York, NY USA.
   [Ewing, Rod] Int Union Mat Res Soc, McKeesport, PA USA.
RP Levenson, M (reprint author), Oak Ridge Natl Lab, Oak Ridge, TN 37830 USA.
NR 67
TC 0
Z9 0
U1 0
U2 0
PU NATL ACADEMIES PRESS
PI WASHINGTON
PA 2101 CONSTITUTION AVE, WASHINGTON, DC 20418 USA
BN 978-0-309-18733-6
PY 2011
BP 219
EP 240
PG 22
WC Energy & Fuels; Nuclear Science & Technology
SC Energy & Fuels; Nuclear Science & Technology
GA BC7IS
UT WOS:000354900900011
ER

PT J
AU Wakelin, S
   Page, D
   Dillon, P
   Pavelic, P
   Abell, GCJ
   Gregg, AL
   Brodie, E
   DeSantis, TZ
   Goldfarb, KC
   Anderson, G
AF Wakelin, S.
   Page, D.
   Dillon, P.
   Pavelic, P.
   Abell, G. C. J.
   Gregg, A. L.
   Brodie, E.
   DeSantis, T. Z.
   Goldfarb, K. C.
   Anderson, G.
TI Microbial community structure of a slow sand filter schmutzdecke: a
   phylogenetic snapshot based on rRNA sequence analysis
SO WATER SCIENCE AND TECHNOLOGY-WATER SUPPLY
LA English
DT Article
DE Archaea; bacteria; Eukarya; PhyloChip; schmutzdecke; slow sand filter;
   SSU rRNA
AB Slow sand filters (SSF) are widely used to treat water for potable use. The process is dependent on the activities of complex microbial communities in the biofilm (schmutzdecke) layer. In this study, we generated a comprehensive view of three-domain microbiological complexity within a model SSF. DNA was analysed using a high-density microarray (PhyloChip) and rRNA library analysis. The Eukaryotic community was dominated by Cercozoa (Ebridd-type protists); these are likely to be involved in predation of other organisms in the schmutzdecke layer, thus proving opportunity for successional development. Ciliate protozoa, green microalgae, stramenopiles, amoeboid protozoa and fungi in the Phylum Ascomycota and the deep-branching Chytridiomycota were also detected. The Archaeal community was dominated by Euryarchaeota, and most were Halobacteriales. These organisms may contribute to filter function through removal of dissolved organic carbon, a primary treatment goal of these filters. Given that the Eukaryotic and Archaeal communities were examined using clone libraries, the expected richness of taxa present is expected to be greater than detected here and dependent on sampling effort (library size). The bacterial community was rich in taxa (21 Phyla) but was not dominated by any phylogenetic group. The successful function of SSF's relies on interactions between taxa (e. g. grazing of Cercozoa protists on bacteria), and removal of dissolved organic matter from the influent. Understanding the taxa and functions in these systems will aid in monitoring and managing SSF for optimal water quality.
C1 [Wakelin, S.] AgResearch Ltd, Lincoln Res Ctr, Christchurch 8140, New Zealand.
   [Wakelin, S.; Page, D.; Dillon, P.; Pavelic, P.; Gregg, A. L.] CSIRO, Water Hlth Country Flagship, Glen Osmond, SA, Australia.
   [Pavelic, P.] Int Crops Res Inst Semi Arid Trop, IWMI, Patancheru 502324, Andhra Pradesh, India.
   [Abell, G. C. J.] CSIRO, Marine & Atmospher Sci, Hobart, Tas 7001, Australia.
   [Brodie, E.; DeSantis, T. Z.; Goldfarb, K. C.; Anderson, G.] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Dept Ecol, Div Earth Sci, Berkeley, CA 94720 USA.
RP Wakelin, S (reprint author), AgResearch Ltd, Lincoln Res Ctr, Private Bag 4749, Christchurch 8140, New Zealand.
EM steve.wakelin@agresearch.co.nz
RI Page, Declan/F-2566-2011; Abell, Guy/A-1767-2010; Brodie,
   Eoin/A-7853-2008; 
OI Page, Declan/0000-0002-4902-3911; Brodie, Eoin/0000-0002-8453-8435;
   Wakelin, Steve/0000-0002-1167-8699
FU CSIRO Water for a Healthy Country Programme; ACIAR [LWR/2003/006]; CSIRO
   Julius Award; US DOE Berkeley labs
FX The authors thank Mr Antoine Chassange, Ms Karren Barry and Dr Hartmut
   Hollander for help with experimental work at the Urrbrae wetlands. This
   work was supported by CSIRO Water for a Healthy Country Programme and
   ACIAR project LWR/2003/006 'Enhancing production in the Philippines by
   sustainable use of shallow groundwater'. S.A. Wakelin was supported by a
   CSIRO Julius Award (funding for travel to US DOE Berkeley labs for
   PhyloChip analysis).
NR 44
TC 8
Z9 8
U1 1
U2 13
PU IWA PUBLISHING
PI LONDON
PA ALLIANCE HOUSE, 12 CAXTON ST, LONDON SW1H0QS, ENGLAND
SN 1606-9749
J9 WATER SCI TECH-W SUP
JI Water Sci. Technol.-Water Supply
PY 2011
VL 11
IS 4
BP 426
EP 436
DI 10.2166/ws.2011.063
PG 11
WC Engineering, Environmental; Environmental Sciences; Water Resources
SC Engineering; Environmental Sciences & Ecology; Water Resources
GA V33UH
UT WOS:000209043200006
ER

PT S
AU Moody, DI
   Brumby, SP
   Myers, KL
   Pawley, NH
AF Moody, Daniela I.
   Brumby, Steven P.
   Myers, Kary L.
   Pawley, Norma H.
BE Papadakis, M
   VanDeVille, D
   Goyal, VK
TI Radio Frequency (RF) Transient Classification using Sparse
   Representations over Learned Dictionaries
SO WAVELETS AND SPARSITY XIV
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Wavelets and Sparsity XIV
CY AUG 21-24, 2011
CL San Diego, CA
SP SPIE
DE RF classification; sparse representation; dictionary learning; K-SVD
   algorithm; Hebbian learning algorithm
ID PURSUIT
AB Automatic classification of transitory or pulsed radio frequency (RF) signals is of particular interest in persistent surveillance and remote sensing applications. Such transients are often acquired in noisy, cluttered environments, and may be characterized by complex or unknown analytical models, making feature extraction and classification difficult. We propose a fast, adaptive classification approach based on non-analytical dictionaries learned from data. We compare two dictionary learning methods from the image analysis literature, the K-SVD algorithm and Hebbian learning, and extend them for use with RF data. Both methods allow us to learn discriminative RF dictionaries directly from data without relying on analytical constraints or additional knowledge about the expected signal characteristics. We then use a pursuit search over the learned dictionaries to generate sparse classification features in order to identify time windows that contain a target pulse. In this paper we compare the two dictionary learning methods and discuss how their performance changes as a function of dictionary training parameters. We demonstrate that learned dictionary techniques are suitable for pulsed RF analysis and present results with varying background clutter and noise levels.
C1 [Moody, Daniela I.; Brumby, Steven P.; Myers, Kary L.; Pawley, Norma H.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Moody, DI (reprint author), Los Alamos Natl Lab, POB 1663, Los Alamos, NM 87545 USA.
EM brumby@lanl.gov
OI Moody, Daniela/0000-0002-4452-8208; Myers, Kary/0000-0002-5642-959X
NR 11
TC 0
Z9 0
U1 1
U2 4
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-81948-748-3
J9 PROC SPIE
PY 2011
VL 8138
AR 81381S
DI 10.1117/12.898894
PG 8
WC Engineering, Electrical & Electronic; Optics; Physics, Applied
SC Engineering; Optics; Physics
GA BXX99
UT WOS:000297583100047
ER

PT S
AU Qiao, HA
   Anheier, NC
   Musgraves, JD
   Richardson, K
   Hewak, DW
AF Qiao, Hong A.
   Anheier, Norm C.
   Musgraves, J. David
   Richardson, Kathleen
   Hewak, Daniel W.
BE Tustison, RW
TI Measurement of Chalcogenide Glass Optical Dispersion Using a
   Mid-Infrared Prism Coupler
SO WINDOW AND DOME TECHNOLOGIES AND MATERIALS XII
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on Window and Dome Technologies and Materials XII
CY APR 27-28, 2011
CL Orlando, FL
SP SPIE
DE mid-infrared; optical index; prism coupling; chalcogenide glass; dn/dT
ID INDEX
AB Physical properties of chalcogenide glass, including broadband infrared transparency, high refractive index, low glass transition temperature, and nonlinear properties, make them attractive candidates for advanced mid-infrared (3 to 12 mu m) optical designs. Efforts focused at developing new chalcogenide glass formulations and processing methods require rapid quantitative evaluation of their optical constants to guide the materials research. However, characterization of important optical parameters such as optical dispersion and thermal coefficient remains a slow and costly process, generally with limited accuracy. The recent development of a prism coupler at the Pacific Northwest National Laboratory (PNNL) now enables rapid, high precision measurement of refractive indices at discrete wavelengths from the visible to the mid-infrared. Optical dispersion data of several chalcogenide glass families were collected using this method. Variations in the optical dispersion were correlated to glass composition and compared against measurements using other methods. While this work has been focused on facilitating chalcogenide glass synthesis, mid-infrared prism coupler analysis has broader applications to other mid-infrared optical material development efforts, including oxide glasses and crystalline materials.
C1 [Qiao, Hong A.; Anheier, Norm C.] Pacific NW Natl Lab, Richland, WA 99352 USA.
RP Qiao, HA (reprint author), Pacific NW Natl Lab, Richland, WA 99352 USA.
EM amy.qiao@pnnl.gov
RI Richardson, Kathleen/A-6012-2011
NR 16
TC 2
Z9 2
U1 0
U2 3
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-81948-590-8
J9 PROC SPIE
PY 2011
VL 8016
AR 80160F
DI 10.1117/12.884320
PG 10
WC Optics; Physics, Condensed Matter
SC Optics; Physics
GA BWW03
UT WOS:000295118800013
ER

PT J
AU Lichty, MG
   Janowitz, IL
   Rempel, DM
AF Lichty, Monica G.
   Janowitz, Ira L.
   Rempel, David M.
TI Ergonomic evaluation of ten single-channel pipettes
SO WORK-A JOURNAL OF PREVENTION ASSESSMENT & REHABILITATION
LA English
DT Article
DE Laboratory; usability testing; tool design; biotechnology
ID HAND
AB Repetitive pipetting is a task that is associated with work-related musculoskeletal disorders of the hand and arm.
   Objective: The purpose of this study was to evaluate the usability and ergonomic performance of commercially available pipettes as determined by user ratings and objective measurements.
   Participants: Participants were laboratory technicians and scientists at the Lawrence Berkeley National Laboratory with experience performing pipetting tasks.
   Methods: Twenty-one experienced pipette users completed a standardized pipetting task with 5 manual and 5 electronic pipettes. After using each pipette, the user rated it for attributes of comfort and usability.
   Results: Although no single pipette was rated significantly better than all of the others for every attribute tested, some significant differences were found between pipettes. The Rainin Pipet-Lite received the highest overall quality score among manual pipettes, while the Thermo Scientific Finnpipette Novus was the top-ranked electronic pipette. Features correlated with greater hand and arm comfort were lower tip ejection force, lower blowout force, and pipette balance in the hand.
   Conclusions: The findings, when considered with participant comments, provide insights into desirable pipette features and emphasize the value of user testing and the importance of the interactions between task, workplace layout, and pipette design.
C1 [Lichty, Monica G.] Battelle Ctr Human Performance & Safety, Seattle, WA 98109 USA.
   [Janowitz, Ira L.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Environm Hlth & Safety, Berkeley, CA 94720 USA.
   [Rempel, David M.] Univ Calif Berkeley, Ergon Program, Berkeley, CA 94720 USA.
   [Rempel, David M.] Univ Calif San Francisco, Div Occupat & Environm Med, Richmond, CA USA.
RP Lichty, MG (reprint author), Battelle Ctr Human Performance & Safety, 1100 Dexter Ave N,Ste 400, Seattle, WA 98109 USA.
EM lichtym@battelle.org
RI Rempel, David/E-8424-2013
NR 6
TC 3
Z9 3
U1 0
U2 6
PU IOS PRESS
PI AMSTERDAM
PA NIEUWE HEMWEG 6B, 1013 BG AMSTERDAM, NETHERLANDS
SN 1051-9815
J9 WORK
JI Work
PY 2011
VL 39
IS 2
SI SI
BP 177
EP 185
DI 10.3233/WOR-2011-1164
PG 9
WC Public, Environmental & Occupational Health
SC Public, Environmental & Occupational Health
GA 789PD
UT WOS:000292526900011
PM 21673445
ER

PT J
AU Rempel, P
   Janowitz, I
   Alexandre, M
   Lee, DL
   Rempel, D
AF Rempel, Paul
   Janowitz, Ira
   Alexandre, Melanie
   Lee, David L.
   Rempel, David
TI The effect of two alternative arm supports on shoulder and upper back
   muscle loading during pipetting
SO WORK-A JOURNAL OF PREVENTION ASSESSMENT & REHABILITATION
LA English
DT Article
DE Electromyography (EMG); musculoskeletal disorders (MSD); ergonomics
ID FOREARM SUPPORT; DISCOMFORT; DISORDERS; WORK
AB Objective: Pipetting involves static upper arm positions with the pipette held away from the body for sustained periods of time, putting increased musculoskeletal load on the shoulder and upper back. This study explores the effect of using two alternative arm supports while pipetting on muscle loading in the shoulder/neck region.
   Participants: 15 experienced pipette users participated in this study.
   Methods: In a repeated-measures design, participants performed simulated pipetting in a laboratory setting under three arm support conditions: (1) a gel pad on the work surface, (2) a freely-moving counter-balanced forearm support, and (3) no support (control). Surface electromyography (EMG) of the anterior deltoid and upper trapezius muscles were recorded, as well as productivity and subjective usability.
   Results: Both arm support conditions resulted in significantly lower mean muscle activity of the anterior deltoid and upper trapezius muscles (p < 0.001) and significantly higher subjective comfort ratings (p < 0.001) compared to the control condition. The freely moving forearm support resulted in significantly lower peak muscle activity in the anterior deltoid compared to the control condition (p < 0.001). Productivity was not affected by the arm supports. These findings suggest that arm support may be beneficial in reducing muscle loading and improving comfort in the shoulder and upper back during pipetting. Future studies are needed to measure the impact of these arm supports in the workplace.
C1 [Rempel, Paul] Univ Calif Berkeley, Berkeley, CA 94720 USA.
   [Alexandre, Melanie] Univ Calif Berkeley, Lawrence Berkeley Lab, Joint Genome Inst, Berkeley, CA 94720 USA.
   [Lee, David L.; Rempel, David] Univ Calif San Francisco, Dept Med, San Francisco, CA USA.
RP Rempel, D (reprint author), Univ Calif San Francisco, Dept Med, 1301 S 46th St,UC RFS Bldg 163, Richmond, CA 94804 USA.
EM david.rempel@ucsf.edu
RI Rempel, David/E-8424-2013
NR 9
TC 5
Z9 5
U1 0
U2 2
PU IOS PRESS
PI AMSTERDAM
PA NIEUWE HEMWEG 6B, 1013 BG AMSTERDAM, NETHERLANDS
SN 1051-9815
J9 WORK
JI Work
PY 2011
VL 39
IS 2
SI SI
BP 195
EP 200
DI 10.3233/WOR-2011-1166
PG 6
WC Public, Environmental & Occupational Health
SC Public, Environmental & Occupational Health
GA 789PD
UT WOS:000292526900013
PM 21673447
ER

PT S
AU Clementson, J
AF Clementson, Joel
BE Dunn, J
   Klisnick, A
TI Spectral modeling of Fe XVII pumped by a free-electron x-ray laser
SO X-RAY LASERS AND COHERENT X-RAY SOURCES: DEVELOPMENT AND APPLICATIONS IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on X-ray Lasers and Coherent X-ray Sources - Development and
   Applications IX
CY AUG 23-25, 2011
CL San Diego, CA
SP SPIE
DE atomic spectra; x-ray pumping; laboratory astrophysics; free-electron
   laser
ID BEAM ION-TRAP; LABORATORY MEASUREMENTS; ATOMIC DATA; RELATIVE INTENSITY;
   IRON; LINES; PHOTOIONIZATION; TRANSITIONS; SOLAR; RECOMBINATION
AB The atomic structure and x-ray pumping of neonlike Fe XVII have been calculated and modeled under free-electron laser excitation conditions using the Flexible Atomic Code. Specifically, pumping of the (2p(3/2)3s(1/2))(2,1), (2p(1/2)3s(1/2))(1), (2p(3/2)3d(5/2))(1), and (2p(1/2)3d(3/2))(1) levels that connect with the ground state (2s(2)2p(6))(0) by the so-called M2, 3G, 3F, 3D, and 3C transitions have been studied. In addition, the spectrum of sodiumlike Fe XVI has been modeled to account for possible line coincidences with the neonlike spectrum. The calculations include oscillator strengths, radiative lifetimes, autoionization rates, non-resonant photoionization cross sections, and line emissivities.
C1 Lawrence Livermore Natl Lab, Livermore, CA 94550 USA.
RP Clementson, J (reprint author), Lawrence Livermore Natl Lab, Livermore, CA 94550 USA.
EM clementson@llnl.gov
NR 50
TC 0
Z9 0
U1 0
U2 1
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-8750-6
J9 PROC SPIE
PY 2011
VL 8140
AR 81401C
DI 10.1117/12.896956
PG 11
WC Engineering, Electrical & Electronic; Optics; Physics, Applied
SC Engineering; Optics; Physics
GA BXY65
UT WOS:000297632800034
ER

PT S
AU Dunn, J
   Shepherd, R
   Graf, A
   Steel, A
   Park, J
   Moon, SJ
   Lee, RW
   Audebert, P
   Levy, A
   Gauthier, M
   Fuchs, J
   Fritz, DM
   Cammarata, M
   Milathianaki, D
   Lee, HJ
   Nagler, B
   Fourment, C
   Deneuville, F
   Williams, G
   Fajardo, M
   Gaudin, J
   Vinko, S
   Ciricosta, O
   Wark, J
   Chung, HK
AF Dunn, J.
   Shepherd, R.
   Graf, A.
   Steel, A.
   Park, J.
   Moon, S. J.
   Lee, R. W.
   Audebert, P.
   Levy, A.
   Gauthier, M.
   Fuchs, J.
   Fritz, D. M.
   Cammarata, M.
   Milathianaki, D.
   Lee, H. J.
   Nagler, B.
   Fourment, C.
   Deneuville, F.
   Williams, G.
   Fajardo, M.
   Gaudin, J.
   Vinko, S.
   Ciricosta, O.
   Wark, J.
   Chung, H. K.
BE Dunn, J
   Klisnick, A
TI Spectroscopic studies of hard x-ray free-electron laser-heated foils at
   10(16) Wcm(-2) irradiances
SO X-RAY LASERS AND COHERENT X-RAY SOURCES: DEVELOPMENT AND APPLICATIONS IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on X-ray Lasers and Coherent X-ray Sources - Development and
   Applications IX
CY AUG 23-25, 2011
CL San Diego, CA
SP SPIE
DE Free electron laser; hard x-ray; x-ray crystal spectroscopy; warm dense
   matter; high energy density; plasmas
ID OPERATION; SPECTRUM
AB We report a recent experiment where the first hard x-ray beam line, X-ray Pump Probe (XPP) instrument using the SLAC National Accelerator Laboratory's Linac Coherent Light Source (LCLS) free electron laser, was used to heat thin foils to high energy densities similar to 10(7) J/cm(3). An intense 9 keV, 60 fs (FWHM) duration beam with energy of 2 - 4 mJ at the XPP beam line was focused using beryllium lenses to an irradiance approaching 10(16) Wcm(-2). Targets of 0.5 - 3.5 mu m thick foils of Ag and Cu were studied using a suite of diagnostics including Fourier Domain Interferometry, energy calorimetry and grating and crystal spectrometers. The experimental details and spectroscopic results from the campaign will be described. Preliminary results indicate that the target is heated relatively uniformly to a temperature lower than 20 eV.
C1 [Dunn, J.; Shepherd, R.; Graf, A.; Steel, A.; Park, J.; Moon, S. J.; Lee, R. W.] Lawrence Livermore Natl Lab, Livermore, CA 94551 USA.
RP Dunn, J (reprint author), Lawrence Livermore Natl Lab, Livermore, CA 94551 USA.
RI Vinko, Sam/I-4845-2013; gauthier, Maxence/K-2578-2014; Fajardo,
   Marta/A-4608-2012
OI Vinko, Sam/0000-0003-1016-0975; gauthier, Maxence/0000-0001-6608-9325;
   Fajardo, Marta/0000-0003-2133-2365
NR 10
TC 1
Z9 1
U1 1
U2 6
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-8750-6
J9 PROC SPIE
PY 2011
VL 8140
AR 81400O
DI 10.1117/12.895264
PG 8
WC Engineering, Electrical & Electronic; Optics; Physics, Applied
SC Engineering; Optics; Physics
GA BXY65
UT WOS:000297632800018
ER

PT S
AU Nilsen, J
   Rohringer, N
AF Nilsen, Joseph
   Rohringer, Nina
BE Dunn, J
   Klisnick, A
TI Using the X-FEL to photo-pump X-ray laser transitions in He-like Ne
SO X-RAY LASERS AND COHERENT X-RAY SOURCES: DEVELOPMENT AND APPLICATIONS IX
SE Proceedings of SPIE
LA English
DT Proceedings Paper
CT Conference on X-ray Lasers and Coherent X-ray Sources - Development and
   Applications IX
CY AUG 23-25, 2011
CL San Diego, CA
SP SPIE
DE X-ray laser; X-FEL; Photo-pumping
AB Nearly four decades ago H-like and He-like resonantly photo-pumped laser schemes were proposed for producing X-ray lasers. However, demonstrating these schemes in the laboratory has proved to be elusive because of the difficulty of finding a strong resonant pump line. With the advent of the X-ray free electron laser (X-FEL) at the SLAC Linac Coherent Light Source (LCLS) we now have a tunable X-ray laser source that can be used to replace the pump line in previously proposed laser schemes and allow researchers to study the physics and feasibility of resonantly photo-pumped laser schemes. In this paper we use the X-FEL at 1174 eV to photo-pump the singly excited 1s2p state of He-like Ne to the doubly excited 2p3p state and model gain on the 2p3p-2p2s transition at 175 eV and the 2p3p-1s3p transition at 1017 eV. One motivation for studying this scheme is to explore possible quenching of the gain due to strong non-linear coupling effects from the intense X-FEL beam. We compare this scheme with photo-pumping the He-like Ne ground state to the 1s3p singly excited state followed by lasing on the 3p-2s and 3d-2p transitions at 158 and 151 eV. Experiments are being planned at LCLS to study these laser processes and coherent quantum effects.
C1 [Nilsen, Joseph] Lawrence Livermore Natl Lab, Livermore, CA 94551 USA.
RP Nilsen, J (reprint author), Lawrence Livermore Natl Lab, Livermore, CA 94551 USA.
RI Rohringer, Nina/N-3238-2014
OI Rohringer, Nina/0000-0001-7905-3567
NR 5
TC 0
Z9 0
U1 0
U2 5
PU SPIE-INT SOC OPTICAL ENGINEERING
PI BELLINGHAM
PA 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227-0010 USA
SN 0277-786X
BN 978-0-8194-8750-6
J9 PROC SPIE
PY 2011
VL 8140
AR 814003
DI 10.1117/12.893589
PG 8
WC Engineering, Electrical & Electronic; Optics; Physics, Applied
SC Engineering; Optics; Physics
GA BXY65
UT WOS:000297632800003
ER

PT S
AU de Teramond, GF
   Brodsky, SJ
AF de Teramond, Guy F.
   Brodsky, Stanley J.
GP IOP
TI Light-Front Quantization and AdS/QCD: An overview
SO XIV MEXICAN SCHOOL ON PARTICLES AND FIELDS
SE Journal of Physics Conference Series
LA English
DT Proceedings Paper
CT 14th Mexican School on Particles and Fields (MSPF)
CY NOV 04-12, 2010
CL Morelia, MEXICO
SP Mexican Phys Soc, Div Particles & Fields, Estado Michoacan, Consejo Estatal Ciencia & Tecnologico (COECyT), Univ Michoacana San Nicolas Hidalgo, Univ Sonora, Univ Nacl Autonoma Mexico, Univ Guanajuato, Univ Sinaloa, Centro Investigaciones Estudios Avanzados IPN (CINVESTAV), Consejo Nacl Ciencia & Tecnologia (CONACyT), Acad Mexicana Ciencias, Red Nacl Fisica Altas Energias
ID GAUGE/GRAVITY DUALITY; FORM-FACTORS; SPIN FIELDS; QCD; HOLOGRAPHY;
   SPECTROSCOPY; SUPERGRAVITY; THRESHOLD; MASSLESS; BARYONS
AB We give an overview of the light front holographic approach to strongly coupled QCD, whereby a confining gauge theory quantized on the light front is mapped to a higher-dimensional anti de Sitter (AdS) space incorporating the AdS/CFT correspondence as a useful guide. One can start from the Hamiltonian equation of motion in physical space time by studying the off-shell dynamics of the bound state wavefunctions as a function of the invariant mass of the constituents. To a first semiclassical approximation, where quantum loops and quark masses are not included, this leads to a light-front Hamiltonian equation which describes the bound state dynamics of light hadrons in terms of an invariant impact variable zeta, which measures the separation of the partons within the hadron at equal light-front time. Alternatively, one can start from the gravity side by studying the propagation of hadronic modes in a fixed effective gravitational background which encodes salient properties of the QCD dual theory, such as the ultraviolet conformal limit at the AdS boundary at z -> 0,as well as modifications of the background geometry in the large z infrared region to describe confinement. In the semi classical approximation both approaches are equivalent. This allows us to identify the holographic variable z in AdS space with the impact variable zeta. Light-front holography also allows a precise mapping of transition amplitudes from AdS to physical space-time. In contrast with the usual AdS/QCD framework, in light front holography the internal structure of hadrons is explicitly introduced and the angular momentum of the constituents plays a key role.
C1 [de Teramond, Guy F.] Univ Costa Rica, San Jose, Costa Rica.
   [Brodsky, Stanley J.] Stanford Univ, SLAC, Natl Accelerator Lab, Stanford, CA 94305 USA.
RP de Teramond, GF (reprint author), Univ Costa Rica, San Jose, Costa Rica.
FU Department of Energy [DE-AC02-76SF00515];  [SLAC-PUB-14393]
FX This research was supported by the Department of Energy contract
   DE-AC02-76SF00515. yySLAC-PUB-14393.
NR 60
TC 6
Z9 6
U1 0
U2 1
PU IOP PUBLISHING LTD
PI BRISTOL
PA DIRAC HOUSE, TEMPLE BACK, BRISTOL BS1 6BE, ENGLAND
SN 1742-6588
J9 J PHYS CONF SER
PY 2011
VL 287
AR 012007
DI 10.1088/1742-6596/287/1/012007
PG 12
WC Physics, Particles & Fields
SC Physics
GA BDC24
UT WOS:000312559800007
ER

PT S
AU Hernandez-Garcia, C
   Napsuciale, M
AF Hernandez-Garcia, C.
   Napsuciale, M.
GP IOP
TI Prospects for an Accelerator Program in Mexico Focused on Photon Science
SO XIV MEXICAN SCHOOL ON PARTICLES AND FIELDS
SE Journal of Physics Conference Series
LA English
DT Proceedings Paper
CT 14th Mexican School on Particles and Fields (MSPF)
CY NOV 04-12, 2010
CL Morelia, MEXICO
SP Mexican Phys Soc, Div Particles & Fields, Estado Michoacan, Consejo Estatal Ciencia & Tecnologico (COECyT), Univ Michoacana San Nicolas Hidalgo, Univ Sonora, Univ Nacl Autonoma Mexico, Univ Guanajuato, Univ Sinaloa, Centro Investigaciones Estudios Avanzados IPN (CINVESTAV), Consejo Nacl Ciencia & Tecnologia (CONACyT), Acad Mexicana Ciencias, Red Nacl Fisica Altas Energias
AB Recent interest in developing Mexican expertise in Accelerator Science and Technology has resulted in several actions by the Division of Particles and Fields in Mexico, and by the electron accelerator community in the United States. We report on the very encouraging activities over the past two years which were aimed at developing a light source as the most effective starting point. We present a number of possibilities to initiate and grow an accelerator science program and present a path that would lead to building, commissioning and operating a third or fourth generation light source in Mexico.
C1 [Hernandez-Garcia, C.] Jefferson Lab, 12000 Jefferson Ave,Suite 19, Newport News, VA 23606 USA.
   [Napsuciale, M.] Univ Guanajuato Campus Leon, Dept Fis, Guanajuato 37150, Mexico.
RP Hernandez-Garcia, C (reprint author), Jefferson Lab, 12000 Jefferson Ave,Suite 19, Newport News, VA 23606 USA.
EM chgarcia@jlab.org
NR 2
TC 0
Z9 0
U1 0
U2 0
PU IOP PUBLISHING LTD
PI BRISTOL
PA DIRAC HOUSE, TEMPLE BACK, BRISTOL BS1 6BE, ENGLAND
SN 1742-6588
J9 J PHYS CONF SER
PY 2011
VL 287
AR 012008
DI 10.1088/1742-6596/287/1/012008
PG 8
WC Physics, Particles & Fields
SC Physics
GA BDC24
UT WOS:000312559800008
ER

PT S
AU Escher, JE
   Burke, JT
   Dietrich, FS
   Scielzo, ND
   Ressler, JJ
AF Escher, J. E.
   Burke, J. T.
   Dietrich, F. S.
   Scielzo, N. D.
   Ressler, J. J.
BE BarronPalos, L
   Bijker, R
TI Nuclear reactions for astrophysics and other applications
SO XXXIV SYMPOSIUM ON NUCLEAR PHYSICS
SE Journal of Physics Conference Series
LA English
DT Proceedings Paper
CT 34th Symposium on Nuclear Physics
CY JAN 04-07, 2011
CL Cocoyoc, MEXICO
SP Instituto de Ciencias Nucleares, UNAM, Instituto de Fisica, UNAM, Instituto Nacional de Investigaciones Nucleares, Division de Fisica Nuclear de la SMF, Centro Latinoamericano de Fisica
ID FISSION CROSS-SECTIONS; NEUTRON; ELEMENTS; PROGRESS; STARS
AB Cross sections for compound-nuclear reactions are required for many applications. The surrogate nuclear reactions method provides an indirect approach for determining cross sections for reactions on unstable isotopes, which are difficult or impossible to measure otherwise. Current implementations of the method provide useful cross sections for (n,f) reactions, but need to be improved upon for applications to capture reactions.
C1 [Escher, J. E.; Burke, J. T.; Dietrich, F. S.; Scielzo, N. D.; Ressler, J. J.] Lawrence Livermore Natl Lab, Livermore, CA 94550 USA.
RP Escher, JE (reprint author), Lawrence Livermore Natl Lab, Livermore, CA 94550 USA.
EM escher1@llnl.gov
RI Escher, Jutta/E-1965-2013; Burke, Jason/I-4580-2012
NR 29
TC 0
Z9 0
U1 0
U2 4
PU IOP PUBLISHING LTD
PI BRISTOL
PA DIRAC HOUSE, TEMPLE BACK, BRISTOL BS1 6BE, ENGLAND
SN 1742-6588
J9 J PHYS CONF SER
PY 2011
VL 322
AR 012006
DI 10.1088/1742-6596/322/1/012006
PG 8
WC Physics, Nuclear; Physics, Particles & Fields
SC Physics
GA BYJ87
UT WOS:000299059000006
ER

PT J
AU Bokov, AA
   Rodriguez, BJ
   Zhao, XH
   Ko, JH
   Jesse, S
   Long, XF
   Qu, WG
   Kim, TH
   Budai, JD
   Morozovska, AN
   Kojima, S
   Tan, XL
   Kalinin, SV
   Ye, ZG
AF Bokov, Alexei A.
   Rodriguez, Brian J.
   Zhao, Xiaohui
   Ko, Jae-Hyeon
   Jesse, Stephen
   Long, Xifa
   Qu, Weiguo
   Kim, Tae Hyun
   Budai, John D.
   Morozovska, Anna N.
   Kojima, Seiji
   Tan, Xiaoli
   Kalinin, Sergei V.
   Ye, Zuo-Guang
TI Compositional disorder, polar nanoregions and dipole dynamics in
   Pb(Mg1/3Nb2/3)O-3-based relaxor ferroelectrics
SO ZEITSCHRIFT FUR KRISTALLOGRAPHIE
LA English
DT Article
DE Relaxor ferroelectrics; Compositional disorder; Lead magnesium niobate;
   Dielectric relaxation; Domain structure
ID SINGLE-CRYSTALS; PBMG1/3NB2/3O3; PEROVSKITES; TRANSITION; CLUSTERS;
   DOMAINS; OXIDES; ORDER
AB The complex structure of relaxor ferroelectrics comprises polar nanoregions (PNRs) which appear upon cooling below the Burns temperature and quenched compositional (chemical) disorder. The relation between the polar nanostructure and compositionally ordered regions (CORs) often observed in relaxors has been the subject of extensive theoretical investigations; however, the experimental data, especially concerning Pb(B'B-1/3 ''(2/3))O-3-type complex perovskite relaxors, are rather limited. In this paper, we analyse and discuss the results of our recent investigations of the morphology of CORs and the dynamics of PNRs in Pb(Mg1/3Nb2/3)O-3-based solid solutions in which the degree of compositional disorder was varied by means of changing the composition and/or by means of high-temperature annealing. The samples were characterised using X-ray diffraction, transmission electron microscopy, piezoresponse force microscopy, Brillouin light scattering, dielectric spectroscopy, as well as by measuring pyroelectric effect and ferroelectric hysteresis loops. No influence of the size of CORs on the PNRs relaxation in the ergodic relaxor phase is found. Instead, the CORs size influences significantly the diffuseness of the transition from the field-induced ferroelectric phase to the ergodic relaxor state. The results are interpreted in the framework of a model suggesting the coexistence of static and dynamic PNRs in the ergodic relaxor phase.
C1 [Bokov, Alexei A.; Long, Xifa; Ye, Zuo-Guang] Simon Fraser Univ, Dept Chem, Burnaby, BC V5A 1A6, Canada.
   [Bokov, Alexei A.; Long, Xifa; Ye, Zuo-Guang] Simon Fraser Univ, LABS 4D, Burnaby, BC V5A 1A6, Canada.
   [Rodriguez, Brian J.] Univ Coll Dublin, Dublin 4, Ireland.
   [Zhao, Xiaohui; Qu, Weiguo; Tan, Xiaoli] Iowa State Univ, Dept Mat Sci & Engn, Ames, IA 50011 USA.
   [Ko, Jae-Hyeon; Kim, Tae Hyun] Hallym Univ, Dept Phys, Chunchon 200702, Gangwondo, South Korea.
   [Jesse, Stephen; Budai, John D.; Kalinin, Sergei V.] Oak Ridge Natl Lab, Oak Ridge, TN 37831 USA.
   [Morozovska, Anna N.] Natl Acad Sci Ukraine, V Lashkaryov Inst Semicond Phys, UA-03028 Kiev, Ukraine.
   [Kojima, Seiji] Univ Tsukuba, Inst Mat Sci, Tsukuba, Ibaraki 3058573, Japan.
RP Bokov, AA (reprint author), Simon Fraser Univ, Dept Chem, Burnaby, BC V5A 1A6, Canada.
EM abokov@sfu.ca; zye@sfu.ca
RI Bokov, Alexei/C-6924-2008; Kalinin, Sergei/I-9096-2012; Tan,
   Xiaoli/C-3376-2013; Qu, Weiguo/D-9875-2013; Rodriguez,
   Brian/A-6253-2009; Jesse, Stephen/D-3975-2016; Kojima,
   Seiji/L-9006-2016; Budai, John/R-9276-2016
OI Bokov, Alexei/0000-0003-1126-3378; Kalinin, Sergei/0000-0001-5354-6152;
   Tan, Xiaoli/0000-0002-4182-663X; Qu, Weiguo/0000-0001-7925-7340;
   Rodriguez, Brian/0000-0001-9419-2717; Jesse,
   Stephen/0000-0002-1168-8483; Kojima, Seiji/0000-0003-1933-9269; Budai,
   John/0000-0002-7444-1306
FU U.S. Office of Naval Research; Natural Science & Engineering Research
   Council of Canada; National Science Foundation [DMR-0346819]; National
   Research Foundation of Korea [2010-0010497]; Division of Scientific User
   Facilities, US DOE, through the Center for Nanophase Materials Sciences
   at ORNL
FX The work was supported by the U.S. Office of Naval Research and the
   Natural Science & Engineering Research Council of Canada (AAB, ZGY),
   National Science Foundation (DMR-0346819, XT), the National Research
   Foundation of Korea (2010-0010497, JHK) and Division of Scientific User
   Facilities, US DOE, through the Center for Nanophase Materials Sciences
   at ORNL (BJR, SJ, SVK).
NR 39
TC 19
Z9 19
U1 2
U2 48
PU WALTER DE GRUYTER GMBH
PI BERLIN
PA GENTHINER STRASSE 13, D-10785 BERLIN, GERMANY
SN 0044-2968
J9 Z KRISTALLOGR
JI Z. Kristall.
PY 2011
VL 226
IS 2
BP 99
EP 107
DI 10.1524/zkri.2011.1299
PG 9
WC Crystallography
SC Crystallography
GA 731JS
UT WOS:000288102900002
ER

PT J
AU Thimmaiah, S
   Han, MK
   Miller, GJ
AF Thimmaiah, Srinivasa
   Han, Mi-Kyung
   Miller, Gordon J.
TI Zn-13(CrxAl1-x)(27) (x=0.34-0.37): a new intermetallic phase containing
   icosahedra as building units
SO ZEITSCHRIFT FUR KRISTALLOGRAPHIE
LA English
DT Article
DE Intermetallic compound; I3 cluster; Single crystal structure analysis;
   Powder diffraction analysis; X-ray diffraction; Complex
ID CR-ZN SYSTEM; QUASI-CRYSTAL; THERMODYNAMIC ASSESSMENT; METALLIC PHASE;
   APPROXIMANT; ALLOY; 460-DEGREES-C; MAGNETISM; AL-4(CR; CLUSTER
AB The title compounds Zn-13(CrxAl1 (-) (x))(27) (x = 0.34-0.37) were obtained by melting the pure elements at 923 K, and followed by a heat treatment at 723 K in a tantalum container. According to single crystal structural analysis, the title compounds crystallize in the rhombohedral system, adopting a new structure type (R (3) over barm, a = 7.5971(8), c = 36.816(6), for crystal I). Single crystal X-ray structural analysis reveals a statistical mixing of Cr/Al in their crystallographic positions. Single crystal and powder X-ray diffraction as well as energy dispersive X-ray analyses suggested the title phase to have a narrow homogeneity range. The substructure of Zn-13(CrxAl1 (-) (x))(27) shows close resemblance with the Mn3Al10 structure type. A bonding analysis, through crystal orbital Hamiltonian populations (COHPs), of "Cr9Al18Zn13" as a representative composition indicated that both homo- and heteronuclear interactions are important for the stability of this new phase.
C1 [Thimmaiah, Srinivasa] Iowa State Univ, Ames, IA 50011 USA.
   US DOE, Ames Lab, Ames, IA 50011 USA.
RP Thimmaiah, S (reprint author), Iowa State Univ, Ames, IA 50011 USA.
EM srini@iastate.edu
RI Thimmaiah, Srinivasa/H-1049-2012
FU Iowa State University [DE-AC02-07CH11358]; Materials Sciences Division
   of the Office of Basic Energy Sciences of the U.S. Department of Energy
FX This work was carried out at the Ames Laboratory, which is operated for
   the U.S. Department of Energy by Iowa State University under Contract
   No. DE-AC02-07CH11358. This work was supported by the Materials Sciences
   Division of the Office of Basic Energy Sciences of the U.S. Department
   of Energy.
NR 55
TC 3
Z9 3
U1 0
U2 0
PU WALTER DE GRUYTER GMBH
PI BERLIN
PA GENTHINER STRASSE 13, D-10785 BERLIN, GERMANY
SN 0044-2968
J9 Z KRISTALLOGR
JI Z. Kristall.
PY 2011
VL 226
IS 7
BP 557
EP 567
DI 10.1524/zkri.2011.1376
PG 11
WC Crystallography
SC Crystallography
GA 789PE
UT WOS:000292527000003
ER

PT J
AU Lake, CH
   Toby, BH
AF Lake, Charles H.
   Toby, Brian H.
TI Recent developments targeting new and experienced users in EXPGUI, an
   open source Rietveld analysis interface
SO ZEITSCHRIFT FUR KRISTALLOGRAPHIE
LA English
DT Article
DE EXPGUI; Rietveld refinement; GSAS
ID POWDER DIFFRACTION; CHEMICAL REASONABLENESS; CIF APPLICATIONS;
   CRYSTALLOGRAPHY; PDCIF
AB EXPGUI is an open source interface that supplements the GSAS program package, which together provide a powerful set of tools for structure refinement, especially Rietveld Analysis. The combined GSAS-EXPGUI packages are freely distributed and are ideal for both new and experienced users. The latest EXPGUI version includes many new intuitive features including methods of implementing distance restraints, fixing coordinates, advanced searching and viewing of interatomic distances and angles as well as improved user friendliness and much more.
C1 [Lake, Charles H.] Indiana Univ Penn, Indiana, PA 15705 USA.
   [Toby, Brian H.] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
RP Lake, CH (reprint author), Indiana Univ Penn, Indiana, PA 15705 USA.
EM lake@iup.edu
RI Toby, Brian/F-3176-2013
OI Toby, Brian/0000-0001-8793-8285
FU U.S. DOE [DE-AC02-06CH11357]; APS
FX Use of the Advanced Photon Source, an Office of Science User Facility
   operated for the U.S. Department of Energy (DOE) Office of Science by
   Argonne National Laboratory, was supported by the U.S. DOE under
   Contract No. DE-AC02-06CH11357. The APS Visitor Program provided partial
   funds to support CHL's sabbatical at the APS.
NR 18
TC 0
Z9 0
U1 1
U2 18
PU OLDENBOURG VERLAG
PI MUNICH
PA LEKTORAT MINT, POSTFACH 80 13 60, D-81613 MUNICH, GERMANY
SN 0044-2968
J9 Z KRISTALLOGR
JI Z. Kristall.
PY 2011
VL 226
IS 12
BP 892
EP 897
DI 10.1524/zkri.2011.1378
PG 6
WC Crystallography
SC Crystallography
GA 866ER
UT WOS:000298363800005
ER

PT J
AU Tian, P
   Billinge, SJL
AF Tian, Peng
   Billinge, Simon J. L.
TI Testing different methods for estimating uncertainties on Rietveld
   refined parameters using SrRietveld
SO ZEITSCHRIFT FUR KRISTALLOGRAPHIE
LA English
DT Article
DE Rietveld refinement; Error estimation; Monte Carlo; Subset sampling
ID NEUTRON POWDER-DIFFRACTION; PROFILE
AB The advent of fast computing allows more computationally expensive, though possibly more accurate, approaches for estimating uncertainties on Rietveld refined parameters. Here we compare three such methods, using two different refinement programs, FullProf and GSAS. This is facilitated by the use of a new Rietveld refinement package, SrRietveld, that provides Python wrappers for FullProf and GSAS. The refined values on the parameters from two different refinement engines match each other very well. The uncertainty estimates determined using the different methods are also consistent, though FullProf and GSAS estimate the parameter uncertainties slightly differently from each other, which is discussed. More importantly, we find that the refined results are very sensitive to the statistical weights used in the least squares equation. Different weights, for example from uncertain or incorrectly propagated random errors on the data, lead to significantly different refined values. This means that uncertainty estimates on refined parameters should be increased when the random errors on the data are not well known, as for example in many cases where area detectors are used, and care should be taken to propagate errors correctly in any data preprocessing such as normalization by a smoothed spectrum. The computationally expensive bootstrap error estimation methods are facilitated by the use of SrRietveld, but are not required in most cases though may be useful in some cases, for example if the random errors on the data are not well known.
C1 [Billinge, Simon J. L.] Columbia Univ, Dept Appl Phys & Appl Math, New York, NY 10027 USA.
   [Tian, Peng] Michigan State Univ, Dept Phys & Astron, E Lansing, MI 48824 USA.
   [Billinge, Simon J. L.] Brookhaven Natl Lab, Condensed Matter Phys & Mat Sci Dept, Upton, NY 11973 USA.
RP Billinge, SJL (reprint author), Columbia Univ, Dept Appl Phys & Appl Math, 500 W 120th St, New York, NY 10027 USA.
EM sb2896@columbia.edu
FU NSF [DMR-0520547, DMR 0703940]; DOE [W-7405-ENG-36]
FX We thank Robert B. Von Dreele and Juan Rodriguez-Carvajal for their
   helpful discussions. We also thank Thomas Proffen for providing standard
   data from NPDF that is used in this study. SrRietveld was developed
   under NSF award DMR-0520547. PT acknowledges support from the NSF
   through grant DMR 0703940. This work has benefited from the use of NPDF
   at the Lujan Center at Los Alamos Neutron Science Center, funded by DOE
   through Contract No. W-7405-ENG-36.
NR 16
TC 4
Z9 4
U1 2
U2 9
PU OLDENBOURG VERLAG
PI MUNICH
PA LEKTORAT MINT, POSTFACH 80 13 60, D-81613 MUNICH, GERMANY
SN 0044-2968
J9 Z KRISTALLOGR
JI Z. Kristall.
PY 2011
VL 226
IS 12
BP 898
EP 904
DI 10.1524/zkri.2011.1421
PG 7
WC Crystallography
SC Crystallography
GA 866ER
UT WOS:000298363800006
ER

PT J
AU Ge, MH
   Corbett, JD
AF Ge, Ming-Hui
   Corbett, John D.
TI Crystal structure of triytterbium pentastannide, Sn5Yb3
SO ZEITSCHRIFT FUR KRISTALLOGRAPHIE-NEW CRYSTAL STRUCTURES
LA English
DT Article
ID ZINTL PHASE; SOLID-STATE; ANIONS; CLUSTERS; BA3PB5; LA3IN5; TIN
AB Sn5Yb3, orthorhombic, Cmcm (no. 63), a = 10.193(2) angstrom, b = 8.168(2) angstrom, c = 10.375(2) angstrom, V = 863.7 angstrom(3), Z = 4, R-gt(F) = 0.032, wR(ref)(F-2) = 0.081, T = 293 K.
C1 [Ge, Ming-Hui] Beijing Inst Petrochem Technol, Coll Chem Engn, Beijing 102617, Peoples R China.
   [Corbett, John D.] Iowa State Univ, Ames Lab, DOE & Dept Chem, Ames, IA 50010 USA.
RP Ge, MH (reprint author), Beijing Inst Petrochem Technol, Coll Chem Engn, Beijing 102617, Peoples R China.
EM mhge@bipt.edu.en
FU DOE by Iowa State University [DE-AC02-07CH11358]; Beijing Institute of
   Petrochemical Engineering
FX This research was supported by the Ames Laboratory operated for DOE by
   Iowa State University (contract no. DE-AC02-07CH11358) and the fund for
   Young Scholars from Beijing Institute of Petrochemical Engineering.
NR 13
TC 2
Z9 2
U1 2
U2 3
PU OLDENBOURG VERLAG
PI MUNICH
PA LEKTORAT MINT, POSTFACH 80 13 60, D-81613 MUNICH, GERMANY
SN 1433-7266
J9 Z KRIST-NEW CRYST ST
JI Z. Krist.-New Cryst. Struct.
PY 2011
VL 226
IS 4
BP 445
EP 446
DI 10.1524/ncrs.2011.0199
PG 2
WC Crystallography
SC Crystallography
GA 882TV
UT WOS:000299587700006
ER

PT J
AU Kasper, T
   Lucassen, A
   Jasper, AW
   Li, WJ
   Westmoreland, PR
   Kohse-Hoinghaus, K
   Yang, B
   Wang, J
   Cool, TA
   Hansen, N
AF Kasper, Tina
   Lucassen, Arnas
   Jasper, Ahren W.
   Li, Wenjun
   Westmoreland, Phillip R.
   Kohse-Hoeinghaus, Katharina
   Yang, Bin
   Wang, Juan
   Cool, Terrill A.
   Hansen, Nils
TI Identification of Tetrahydrofuran Reaction Pathways in Premixed Flames
SO ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH
   IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS
LA English
DT Article
DE Combustion Chemistry; Laminar Flames; Molecular Beam Mass Spectrometry;
   Tetrahydrofuran; Biofuel
ID PHOTOIONIZATION MASS-SPECTROMETRY; DIMETHYL ETHER FLAMES; GAS-PHASE
   OXIDATION; LOW-PRESSURE FLAMES; FUEL-RICH FLAMES; THERMAL-REACTIONS;
   HIGH-TEMPERATURES; REFLECTED SHOCKS; CYCLIC ETHERS; COMBUSTION CHEMISTRY
AB Premixed low-pressure tetrahydrofuran/oxygen/argon flames are investigated by photoionization molecular-beam mass spectrometry using vacuum-ultraviolet synchrotron radiation. For two equivalence ratios (phi = 1.00 and 1.75), mole fractions are measured as a function of distance from the burner for almost 60 intermediates with molar masses ranging from 2 (H(2)) to 88 (C(4)H(6)O(2)), providing a broad database for flame modeling studies. The isomeric composition is resolved by comparisons between experimental photoionization efficiency data and theoretical simulations, based on calculated ionization energies and Franck-Condon factors. Special emphasis is put on the resolution of the first reaction steps in the fuel destruction. The photoionization experiments are complemented by electron-ionization molecular-beam mass-spectrometry measurements that provide data with high mass resolution. For three additional flames with intermediate equivalence ratios (phi = 1.20, 1.40 and 1.60), mole fractions of major species and photoionization efficiency spectra of intermediate species are reported, extending the database for the development of chemical kinetic models.
C1 [Kasper, Tina; Jasper, Ahren W.; Hansen, Nils] Sandia Natl Labs, Combust Res Facil, Livermore, CA 94551 USA.
   [Lucassen, Arnas; Kohse-Hoeinghaus, Katharina] Univ Bielefeld, Dept Chem, D-33615 Bielefeld, Germany.
   [Li, Wenjun; Westmoreland, Phillip R.] N Carolina State Univ, Dept Chem & Biomol Engn, Raleigh, NC 27695 USA.
   [Yang, Bin; Wang, Juan; Cool, Terrill A.] Cornell Univ, Sch Appl & Engn Phys, Ithaca, NY 14853 USA.
RP Kasper, T (reprint author), Univ Duisburg Essen, Fac Engn, Inst Combust & Gasdynam, Duisburg, Germany.
EM tina.kasper@uni-due.de
RI Kohse-Hoinghaus, Katharina/A-3867-2012; Hansen, Nils/G-3572-2012;
   Lucassen, Arnas/G-3803-2013; Yang, Bin/A-7158-2008; Jasper,
   Ahren/A-5292-2011; Kasper, Tina/A-2975-2017
OI Lucassen, Arnas/0000-0003-2967-2030; Yang, Bin/0000-0001-7333-0017;
   Kasper, Tina/0000-0003-3993-5316
FU Office of Basic Energy Sciences (BES), U.S. Department of Energy (DOE)
   [DE-FG02-01ER1518 (TAC), DE-FG02-91ER14192 (PRW)]; DFG [KO 1363/18-3];
   MIWF of the state of North Rhine Westphalia, Germany; U.S. DOE, Office
   of Basic Energy Sciences under the Energy Frontier Research Center for
   Combustion Science [DE-SC0001198]; NNSA [DE-AC04-94-AL85000]; DOE/BES
   [DE-AC02-05CH11231]
FX We thank Paul Fugazzi and Sarah Ferrell for technical assistance. This
   work was supported by the Office of Basic Energy Sciences (BES), U.S.
   Department of Energy (DOE), under grants DE-FG02-01ER1518 (TAC) and
   DE-FG02-91ER14192 (PRW) and by the DFG under KO 1363/18-3 (KKH). TK is
   supported by MIWF of the state of North Rhine Westphalia, Germany. NH
   and BY are supported by the U.S. DOE, Office of Basic Energy Sciences
   under the Energy Frontier Research Center for Combustion Science (Grant
   No. DE-SC0001198). Sandia is a multi-program laboratory operated by
   Sandia Corporation for NNSA under contract DE-AC04-94-AL85000. The
   Advanced Light Source is supported by DOE/BES under DE-AC02-05CH11231.
NR 52
TC 24
Z9 24
U1 7
U2 50
PU OLDENBOURG VERLAG
PI MUNICH
PA LEKTORAT MINT, POSTFACH 80 13 60, D-81613 MUNICH, GERMANY
SN 0942-9352
J9 Z PHYS CHEM
JI Z. Phys. Chemie-Int. J. Res. Phys. Chem. Chem. Phys.
PY 2011
VL 225
IS 11-12
SI SI
BP 1237
EP 1270
DI 10.1524/zpch.2011.0163
PG 34
WC Chemistry, Physical
SC Chemistry
GA 880GQ
UT WOS:000299393700007
ER

PT J
AU Kappler, C
   Zador, J
   Welz, O
   Fernandes, RX
   Olzmann, M
   Taatjes, CA
AF Kappler, Claudia
   Zador, Judit
   Welz, Oliver
   Fernandes, Ravi X.
   Olzmann, Matthias
   Taatjes, Craig A.
TI Competing Channels in the Propene plus OH Reaction: Experiment and
   Validated Modeling over a Broad Temperature and Pressure Range
SO ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH
   IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS
LA English
DT Article
DE Reaction Kinetics; Combustion Chemistry; Unimolecular Dissociation;
   Laser Induced Fluorescence; High Pressure
ID HYDROXYL RADICAL REACTIONS; KINETIC-DATA EVALUATION; REACTION-PATH
   DYNAMICS; GAS-PHASE KINETICS; RATE CONSTANTS; ATMOSPHERIC CHEMISTRY;
   LASER FLUORESCENCE; IUPAC SUBCOMMITTEE; REACTION-RATES; C3H6
AB Although the propene + OH reaction has been in the center of interest of numerous experimental and theoretical studies, rate coefficients have never been determined experimentally between similar to 600 and similar to 750 K, where the reaction is governed by the complex interaction of addition, back-dissociation and abstraction. In this work OH time-profiles are measured in two independent laboratories over a wide temperature region (200-950 K) and are analyzed incorporating recent theoretical results. The datasets are consistent both with each other and with the calculated rate coefficients. We present a simplified set of reactions validated over a broad temperature and pressure range, that can be used in smaller combustion models for propene + OH. In addition, the experimentally observed kinetic isotope effect for the abstraction is rationalized using ab initio calculations and variational transition-state theory. We recommend the following approximate description of the OH + C(3)H(6) reaction:
   C(3)H(6) + OH reversible arrow C(3)H(6)OH (R1a,R-1a)
   C(3)H(6) + OH -> C(3)H(5) + H(2)O (R1b)
   k(1a)(200 K <= T <= 950 K; 1 bar <= P) = 1.45 x 10(-11) (T/K)(-0.18)e(460 K/T) cm(3) molecule(-1) s(-1)
   k(-1a)(200 K <= T <= 950 K; 1 bar <= P) = 5.74 x 10(12) e(-12690 K/T) s(-1)
   k(1b)(200 K <= T <= 950 K) = 1.63 x 10(-18) (T/K)(2.36)e(-725 K/T) cm(3) molecule(-1) s(-1)
C1 [Zador, Judit; Welz, Oliver; Fernandes, Ravi X.; Taatjes, Craig A.] Sandia Natl Labs, Combust Res Facil, Livermore, CA 94551 USA.
   [Kappler, Claudia; Olzmann, Matthias] Karlsruher Inst Technol KIT, Inst Phys Chem, D-76131 Karlsruhe, Germany.
RP Zador, J (reprint author), Sandia Natl Labs, Combust Res Facil, Mail Stop 9055, Livermore, CA 94551 USA.
EM jzador@sandia.gov; matthias.olzmann@kit.edu
RI Welz, Oliver/C-1165-2013; Olzmann, Matthias/A-3718-2017
OI Welz, Oliver/0000-0003-1978-2412; Olzmann, Matthias/0000-0002-9932-4261
FU Division of Chemical Sciences, Geosciences, and Biosciences, the Office
   of Basic Energy Sciences, the U.S. Department of Energy; Sandia National
   Laboratories; Lockheed Martin Company; United States Department of
   Energy [DE-AC04-94AL85000]; Cluster of Excellence "Tailor-Made Fuels
   from Biomass"; Excellence Initiative of the German federal and state
   governments to promote science and research at German universities;
   Argonne-Sandia Consortium on High-Pressure Combustion Chemistry [2009
   ANL 59044]; Deutsche Forschungsgemeinschaft [SFB 606]
FX Work at Sandia by R. X. F., J. Z., and C. A. T. was supported by the
   Division of Chemical Sciences, Geosciences, and Biosciences, the Office
   of Basic Energy Sciences, the U.S. Department of Energy and by the
   Laboratory Directed Research and Development program at Sandia National
   Laboratories, a multiprogram laboratory operated by Sandia Corporation,
   a Lockheed Martin Company, for the United States Department of Energy,
   under contract DE-AC04-94AL85000. R. X. F. also acknowledges support at
   RWTH Aachen from Cluster of Excellence "Tailor-Made Fuels from Biomass",
   which is funded by the Excellence Initiative of the German federal and
   state governments to promote science and research at German
   universities. O. W. was supported as part of the Argonne-Sandia
   Consortium on High-Pressure Combustion Chemistry (FWP# 2009 ANL 59044).
   C. K. and M. O. thank the Deutsche Forschungsgemeinschaft for financial
   support within SFB 606, "Non-stationary Combustion: Transport Phenomena,
   Chemical Reactions, Technical Systems".
NR 44
TC 8
Z9 8
U1 0
U2 33
PU OLDENBOURG VERLAG
PI MUNICH
PA LEKTORAT MINT, POSTFACH 80 13 60, D-81613 MUNICH, GERMANY
SN 0942-9352
J9 Z PHYS CHEM
JI Z. Phys. Chemie-Int. J. Res. Phys. Chem. Chem. Phys.
PY 2011
VL 225
IS 11-12
SI SI
BP 1271
EP 1291
DI 10.1524/zpch.2011.0165
PG 21
WC Chemistry, Physical
SC Chemistry
GA 880GQ
UT WOS:000299393700008
ER

PT J
AU Yang, B
   Westbrook, CK
   Cool, TA
   Hansen, N
   Kohse-Hoinghaus, K
AF Yang, Bin
   Westbrook, Charles K.
   Cool, Terrill A.
   Hansen, Nils
   Kohse-Hoeinghaus, Katharina
TI The Effect of Carbon-Carbon Double Bonds on the Combustion Chemistry of
   Small Fatty Acid Esters
SO ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH
   IN PHYSICAL CHEMISTRY & CHEMICAL PHYSICS
LA English
DT Article
DE Unsaturated Esters; C4H6O2; Combustion; Molecular Beam Mass
   Spectrometry; Modeling
ID PHOTOIONIZATION CROSS-SECTIONS; LOW-PRESSURE FLAMES; METHYL BUTANOATE;
   PREMIXED FLAMES; BIODIESEL FUELS; MASS-SPECTROMETRY; ETHYL PROPANOATE;
   DIESEL-ENGINES; ALKYL ESTERS; DECOMPOSITION
AB Environmentally friendly biodiesel is a mixture of saturated and unsaturated methyl (or ethyl) esters of long-chain fatty acids. To experimentally examine the effect of C=C double bonds on the combustion chemistry of fatty acid esters, low-pressure premixed laminar flames of four small esters have been studied using flame-sampling molecular-beam mass spectrometry. Mole fraction profiles of reactants, products, and well-identified stable and reactive combustion intermediates in flames of the saturated species methyl propanoate (CH3CH3COOCH3) and its isomer ethyl acetate (CH3COOCH2CH3) have been compared with results from flames of the unsaturated fuels methyl propenoate (CH2CHCOOCH3) and vinyl acetate (CH3COOCHCH2) flames. A total of eight flames have been studied, with two fuel-rich flame conditions investigated (fuel-equivalence ratios phi = 1.2 and 1.56) for each fuel. In addition, the underlying oxidation chemistry at these premixed flame conditions has been investigated using a detailed chemical kinetic reaction mechanism, which is largely based on a previously proposed model for saturated esters [B. Yang et al., Phys. Chem. Chem. Phys. 13 (2011) 7205]. The combined results provide a detailed understanding of the similarities and differences between the combustion of saturated vs. unsaturated esters. Meanwhile, the isomeric and stoichiometric effects on their combustion chemistry are also addressed. In this paper, experimental and modeling details are discussed with a special focus on the different reaction pathways.
C1 [Westbrook, Charles K.] Lawrence Livermore Natl Lab, Livermore, CA 94550 USA.
   [Yang, Bin; Cool, Terrill A.] Cornell Univ, Sch Appl & Engn Phys, Ithaca, NY 14853 USA.
   [Hansen, Nils] Sandia Natl Labs, Combust Res Facil, Livermore, CA 94551 USA.
   [Kohse-Hoeinghaus, Katharina] Univ Bielefeld, Dept Chem, D-33615 Bielefeld, Germany.
RP Westbrook, CK (reprint author), Lawrence Livermore Natl Lab, Livermore, CA 94550 USA.
EM westbrook1@llnl.gov; tac13@cornell.edu
RI Kohse-Hoinghaus, Katharina/A-3867-2012; Hansen, Nils/G-3572-2012; Yang,
   Bin/A-7158-2008
OI Yang, Bin/0000-0001-7333-0017
FU Office of Basic Energy Sciences (BES), U. S. Department of Energy
   (USDOE) at Cornell University (TAC) [DE-FG02-01ER1518]; Office of Basic
   Energy Sciences (BES), U. S. Department of Energy (USDOE) at the
   Lawrence Livermore National Laboratory (CKW) [DE-AC52-07NA27344];
   Deutsche Forschungsgemeinschaft [KO 1363/18-3]; Sandia Corporation for
   NNSA [DE-AC04-94-AL85000]; USDOE, Office of Basic Energy Sciences under
   the Energy Frontier Research Center for Combustion Science
   [DE-SC0001198]; Office of Science, BES/USDOE [DE-AC02-05CH11231]
FX We thank Paul Fugazzi and Sarah Ferrell for expert technical assistance
   and Juan Wang, Tina Kasper, Patrick Osswald and Wenjun Li for
   experimental assistance. This work is supported by the Office of Basic
   Energy Sciences (BES), U. S. Department of Energy (USDOE), under grant
   DE-FG02-01ER1518 at Cornell University (TAC), under contract
   DE-AC52-07NA27344 at the Lawrence Livermore National Laboratory (CKW),
   by the Deutsche Forschungsgemeinschaft under KO 1363/18-3 (KKH) and by
   the Sandia Corporation for NNSA under contract DE-AC04-94-AL85000. BY
   and NH are also supported by the USDOE, Office of Basic Energy Sciences
   under the Energy Frontier Research Center for Combustion Science (Grant
   No. DE-SC0001198). The Advanced Light Source is supported by the
   Director, Office of Science, BES/USDOE under Contract No.
   DE-AC02-05CH11231.
NR 47
TC 13
Z9 13
U1 7
U2 36
PU OLDENBOURG VERLAG
PI MUNICH
PA LEKTORAT MINT, POSTFACH 80 13 60, D-81613 MUNICH, GERMANY
SN 0942-9352
J9 Z PHYS CHEM
JI Z. Phys. Chemie-Int. J. Res. Phys. Chem. Chem. Phys.
PY 2011
VL 225
IS 11-12
SI SI
BP 1293
EP 1314
DI 10.1524/zpch.2011.0167
PG 22
WC Chemistry, Physical
SC Chemistry
GA 880GQ
UT WOS:000299393700009
ER

PT J
AU Li, N
   Carter, JJ
   Misra, A
   Shao, L
   Wang, H
   Zhang, X
AF Li, Nan
   Carter, J. J.
   Misra, A.
   Shao, L.
   Wang, H.
   Zhang, X.
TI The influence of interfaces on the formation of bubbles in
   He-ion-irradiated Cu/Mo nanolayers
SO PHILOSOPHICAL MAGAZINE LETTERS
LA English
DT Article
DE ion irradiation; Cu; Mo multilayers; He bubbles; interfaces
ID HELIUM IMPLANTED COPPER; GRAIN-BOUNDARIES; PURE METALS; DAMAGE;
   COMPOSITES; NUCLEATION; ACCUMULATION; MECHANISMS; EVOLUTION; LANSCE
AB The role of immiscible Cu/Mo interfaces on the formation of helium (He) bubbles in ion-irradiated Cu/Mo 5 nm multilayers is examined. Interfaces significantly enhance the critical He concentration above which bubbles, approximately 1 nm in diameter, are detected via through-focus imaging in a transmission electron microscope. He-to-vacancy ratio affects the formation and distribution of He bubbles. The diameter of He bubbles in Cu appears to be slightly larger than that in Mo.
C1 [Li, Nan; Zhang, X.] Texas A&M Univ, Dept Mech Engn, College Stn, TX 77843 USA.
   [Li, Nan; Zhang, X.] Texas A&M Univ, Mat Sci & Engn Program, College Stn, TX 77843 USA.
   [Carter, J. J.; Shao, L.] Texas A&M Univ, Dept Nucl Engn, College Stn, TX 77843 USA.
   [Li, Nan; Misra, A.] Los Alamos Natl Lab, Mat Phys & Applicat Div, Los Alamos, NM 87545 USA.
   [Wang, H.] Texas A&M Univ, Dept Elect & Comp Engn, College Stn, TX 77843 USA.
RP Zhang, X (reprint author), Texas A&M Univ, Dept Mech Engn, College Stn, TX 77843 USA.
EM zhangx@tamu.edu
RI Li, Nan /F-8459-2010; Misra, Amit/H-1087-2012; Wang, Haiyan/P-3550-2014
OI Li, Nan /0000-0002-8248-9027; Wang, Haiyan/0000-0002-7397-1209
FU US Army Research Office - Materials Science Division [W911NF-09-1-0223];
   LANL Lab Directed RD (LDRD); DOE, Office of Basic Energy Sciences,
   Energy Frontier Research Center
FX The authors at TAMU acknowledge funding by the US Army Research Office -
   Materials Science Division, under contract no. W911NF-09-1-0223. NL and
   AM at LANL acknowledge support from LANL Lab Directed R&D (LDRD) and
   DOE, Office of Basic Energy Sciences, Energy Frontier Research Center.
   The authors are grateful for discussions with M.J. Demkowicz (MIT) and
   Q.M. Wei (at LANL).
NR 40
TC 25
Z9 25
U1 4
U2 32
PU TAYLOR & FRANCIS LTD
PI ABINGDON
PA 4 PARK SQUARE, MILTON PARK, ABINGDON OX14 4RN, OXON, ENGLAND
SN 0950-0839
EI 1362-3036
J9 PHIL MAG LETT
JI Philos. Mag. Lett.
PY 2011
VL 91
IS 1
BP 19
EP 29
AR PII 927461278
DI 10.1080/09500839.2010.522210
PG 11
WC Materials Science, Multidisciplinary; Metallurgy & Metallurgical
   Engineering; Physics, Applied; Physics, Condensed Matter
SC Materials Science; Metallurgy & Metallurgical Engineering; Physics
GA 678XH
UT WOS:000284116300002
ER

PT J
AU Bozzolo, G
   Mosca, HO
   Yacout, AM
   Hofman, GL
AF Bozzolo, G.
   Mosca, H. O.
   Yacout, A. M.
   Hofman, G. L.
TI Lanthanides migration in U-Zr based nuclear fuels
SO JOURNAL OF NUCLEAR MATERIALS
LA English
DT Article
AB Atomistic modeling using the BFS method for alloys is performed to study the formation of lanthanide-rich precipitates in U-Zr fuel and the segregation patterns of all constituents to the surface. Surface energies for all elements were computed and, together with the underlying concepts of the BFS method, the migration of lanthanides to the surface region in U-Zr fuels is explained. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Bozzolo, G.; Yacout, A. M.; Hofman, G. L.] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Mosca, H. O.] CNEA, Buenos Aires, DF, Argentina.
RP Bozzolo, G (reprint author), Argonne Natl Lab, 9700 S Cass Av, Argonne, IL 60439 USA.
EM guille_bozzolo@yahoo.com
FU US Department of Energy [DE-AC02-06CH11357]
FX Fruitful discussions with N. Bozzolo are gratefully acknowledged. This
   work was supported under US Department of Energy Contract
   DE-AC02-06CH11357.
NR 5
TC 7
Z9 7
U1 0
U2 21
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0022-3115
J9 J NUCL MATER
JI J. Nucl. Mater.
PD DEC 31
PY 2010
VL 407
IS 3
BP 228
EP 231
DI 10.1016/j.jnucmat.2010.10.001
PG 4
WC Materials Science, Multidisciplinary; Nuclear Science & Technology
SC Materials Science; Nuclear Science & Technology
GA 701XT
UT WOS:000285859200014
ER

PT J
AU Jian, LK
   Russell, CT
   Luhmann, JG
   Anderson, BJ
   Boardsen, SA
   Strangeway, RJ
   Cowee, MM
   Wennmacher, A
AF Jian, L. K.
   Russell, C. T.
   Luhmann, J. G.
   Anderson, B. J.
   Boardsen, S. A.
   Strangeway, R. J.
   Cowee, M. M.
   Wennmacher, A.
TI Observations of ion cyclotron waves in the solar wind near 0.3 AU
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID PICK-UP; INTERSTELLAR HYDROGEN; HELIUM
AB Using 2 Hz magnetic field data from the MESSENGER mission, we have investigated more than 300 strong narrowband ion cyclotron wave (ICW) events at a heliocentric distance of about 0.3 AU during 31 May to 9 June 2008. These nearly circularly polarized transverse waves are observed extensively and discretely in the solar wind, with a median duration of 21 s. They are preferentially observed when the magnetic field is more radial than the ambient solar wind. The waves appear both left-handed and right-handed in the spacecraft frame. Their wave frequencies in the spacecraft frame are generally larger than the local proton cyclotron frequency (f(pc)), with a median of 1.44 f(pc). The wave power spectra do not cutoff at the local f(pc). On the basis of their wave characteristics, we conclude that they are intrinsically left-handed in the solar wind frame and they are generated closer to the Sun and carried out to the spacecraft by the super Alfvenic solar wind. After removing the Doppler shift, the wave frequencies in the solar wind frame are all below the local f(pc), with a median of 0.35 f(pc). The ICWs propagate nearly parallel to the magnetic field, and the median wave amplitude is about 0.73 nT, 3% of the background magnetic field. We compare these observations with earlier Helios observations at 0.3 AU in 1976 and contemporary 1 AU observations.
C1 [Jian, L. K.; Russell, C. T.; Strangeway, R. J.] Univ Calif Los Angeles, Inst Geophys & Planetary Phys, Los Angeles, CA 90095 USA.
   [Luhmann, J. G.] Univ Calif Berkeley, Space Sci Lab, Berkeley, CA 94720 USA.
   [Anderson, B. J.] Johns Hopkins Univ, Appl Phys Lab, Baltimore, MD 20723 USA.
   [Boardsen, S. A.] NASA, Goddard Space Flight Ctr, Heliophys Sci Div, Greenbelt, MD 20771 USA.
   [Boardsen, S. A.] Univ Maryland, Goddard Earth Sci & Technol Ctr, Baltimore, MD 21201 USA.
   [Cowee, M. M.] Los Alamos Natl Lab, Space Sci & Applicat ISR 1, Los Alamos, NM 87545 USA.
   [Wennmacher, A.] Univ Cologne, Inst Geophys & Meteorol, D-50923 Cologne, Germany.
RP Jian, LK (reprint author), Univ Calif Los Angeles, Inst Geophys & Planetary Phys, Los Angeles, CA 90095 USA.
EM jlan@igpp.ucla.edu
RI Anderson, Brian/I-8615-2012; Russell, Christopher/E-7745-2012; Jian,
   Lan/B-4053-2010
OI Russell, Christopher/0000-0003-1639-8298; Jian, Lan/0000-0002-6849-5527
FU NASA [NAS5-03131]
FX This work is supported by NASA's STEREO program through grant NAS5-03131
   administered by University of California-Berkeley. We thank all the PIs
   for making the data available. We appreciate Fritz Neubauer, Peter Gary,
   and Philip Isenberg for their useful discussions.
NR 30
TC 25
Z9 25
U1 0
U2 4
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0148-0227
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 31
PY 2010
VL 115
AR A12115
DI 10.1029/2010JA015737
PG 11
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 701RJ
UT WOS:000285839900003
ER

PT J
AU Kim, JH
   Byun, TS
   Hoelzer, DT
AF Kim, Jeoung Han
   Byun, Thak Sang
   Hoelzer, D. T.
TI Tensile fracture characteristics of nanostructured ferritic alloy 14YWT
SO JOURNAL OF NUCLEAR MATERIALS
LA English
DT Article
ID MECHANICAL-PROPERTIES; STEELS; DEFORMATION
AB High temperature tensile fracture behavior has been characterized for the nanostructured ferritic alloy 14YWT (SM10 heat). Uniaxial tensile tests were performed at temperatures ranging from room temperature to 1000 degrees C in vacuum at a nominal strain rate of 10(-3) s(-1). Comparing with the existing oxide dispersion strengthened (ODS) steels such as Eurofer 97 and PM2000, the nanostructured alloy showed much higher yield and tensile strength, but with lower elongation. Microstructural characterization for the tested specimens was focused on the details of fracture morphology and mechanism to provide a feedback for process improvement. Below 600 degrees C, the fracture surfaces exhibited a quasi-brittle behavior presented by a mixture of dimples and cleavage facets. At or above 600 degrees C, however, the fracture surfaces were fully covered with fine dimples. Above 700 degrees C dimple formation occurred by sliding and decohesion of grain boundaries. It was notable that numerous microcracks were observed on the side surface of broken specimens. Formation of these microcracks is believed to be the main origin of the poor ductility of 14YWT alloy. It is suggested that a grain boundary strengthening measure is essential to improve the fracture property of the alloy. Published by Elsevier B.V.
C1 [Byun, Thak Sang; Hoelzer, D. T.] Oak Ridge Natl Lab, Div Mat Sci & Technol, Oak Ridge, TN 37830 USA.
   [Kim, Jeoung Han] Korea Inst Mat Sci, Special Alloys Grp, Chang Won, South Korea.
RP Byun, TS (reprint author), Oak Ridge Natl Lab, Div Mat Sci & Technol, Oak Ridge, TN 37830 USA.
EM byunts@ornl.gov
RI Hoelzer, David/L-1558-2016
FU Korea Ministry of Knowledge with the US Department of Energy [IAN:
   168642601]; US Department of Energy, Office of Nuclear Energy with
   UT-Battelle, LLC [DE-AC05-00OR22725]
FX This research was performed at the Oak Ridge National Laboratory,
   Materials Science and Technology Division and sponsored by the Korea
   Ministry of Knowledge, Visiting Scientists Program, under IAN:
   168642601, with the US Department of Energy. This research was also
   sponsored by US Department of Energy, Office of Nuclear Energy under
   Contract DE-AC05-00OR22725 with UT-Battelle, LLC. The authors would like
   to express special thanks to Drs. J.T. Busby and L. Tan for their
   technical reviews and thoughtful comments.
NR 21
TC 28
Z9 28
U1 3
U2 16
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0022-3115
J9 J NUCL MATER
JI J. Nucl. Mater.
PD DEC 31
PY 2010
VL 407
IS 3
BP 143
EP 150
DI 10.1016/j.jnucmat.2010.09.054
PG 8
WC Materials Science, Multidisciplinary; Nuclear Science & Technology
SC Materials Science; Nuclear Science & Technology
GA 701XT
UT WOS:000285859200002
ER

PT J
AU Fu, EG
   Misra, A
   Wang, H
   Shao, L
   Zhang, X
AF Fu, E. G.
   Misra, A.
   Wang, H.
   Shao, Lin
   Zhang, X.
TI Interface enabled defects reduction in helium ion irradiated Cu/V
   nanolayers
SO JOURNAL OF NUCLEAR MATERIALS
LA English
DT Article
ID AUSTENITIC STAINLESS-STEELS; RADIATION-DAMAGE PRODUCTION; STACKING-FAULT
   TETRAHEDRA; RESEARCH-AND-DEVELOPMENT; ENERGETIC HEAVY-IONS;
   EQUATION-OF-STATE; MECHANICAL-PROPERTIES; GRAIN-SIZE; FCC METALS;
   FERRITIC/MARTENSITIC STEELS
AB Sputter-deposited Cu/V nanolayer films with individual layer thickness, h, varying from 1 to 200 nm were subjected to helium (He) ion irradiation at room temperature. At a peak dose level of 6 displacements per atom (dpa), the average helium bubble density and lattice expansion decrease significantly with decreasing h. The magnitude of radiation hardening decreases with decreasing individual layer thickness, and becomes negligible when h is 2.5 nm or less. This study indicates that nearly immiscible Cu/V interfaces spaced a few nm apart can effectively reduce the concentration of radiation induced point defects. Consequently, Cu/V nanolayers possess enhanced radiation tolerance, i.e., reduction of swelling and suppression of radiation hardening, compared to monolithic Cu or V. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Fu, E. G.; Zhang, X.] Texas A&M Univ, Dept Mech Engn, Mat Sci & Engn Program, College Stn, TX 77843 USA.
   [Fu, E. G.; Misra, A.] Los Alamos Natl Lab, Mat Phys & Applicat Div, Los Alamos, NM 87545 USA.
   [Wang, H.] Texas A&M Univ, Dept Elect & Comp Engn, College Stn, TX 77843 USA.
   [Shao, Lin] Texas A&M Univ, Dept Nucl Engn, College Stn, TX 77843 USA.
RP Zhang, X (reprint author), Texas A&M Univ, Dept Mech Engn, Mat Sci & Engn Program, College Stn, TX 77843 USA.
EM zhangx@tamu.edu
RI Misra, Amit/H-1087-2012; Zhang, Xinghang/H-6764-2013; Wang,
   Haiyan/P-3550-2014
OI Zhang, Xinghang/0000-0002-8380-8667; Wang, Haiyan/0000-0002-7397-1209
FU US Army Research Office - Materials Science Division [W911NF-09-1-0223];
   US DOE, Office of Science, Office of Basic Energy Sciences; Center for
   Integrated Nanotechnologies (CINT); Consortium for Nanomaterials for
   Aerospace Commerce and Technology (CONTACT) program from Texas; Air
   Force
FX XZ acknowledges financial support by US Army Research Office - Materials
   Science Division, under Contract No. W911NF-09-1-0223. AM acknowledges
   support by the US DOE, Office of Science, Office of Basic Energy
   Sciences. The authors also acknowledge discussions with Drs. J.P. Hirth
   and R.G. Hoagland. Support by Center for Integrated Nanotechnologies
   (CINT) under user agreement at Los Alamos National Laboratory is also
   acknowledged. The authors thank Dr. J. Carter and Drs. J.G. Swadener and
   Y.Q. Wang for conducting the He ion irradiation experiments at Texas A&M
   University and Los Alamos National Laboratory for reproducibility
   studies. E.G. Fu acknowledges the support from Consortium for
   Nanomaterials for Aerospace Commerce and Technology (CONTACT) program
   from Texas and the Air Force. We also acknowledge the usage of
   microscopes at the Microscopy and Imaging Center at Texas A&M
   University, and Mr. K. Baldwin and O. Anderoglu for their assistance in
   sputter-deposition of nanolayers.
NR 90
TC 71
Z9 74
U1 4
U2 44
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0022-3115
EI 1873-4820
J9 J NUCL MATER
JI J. Nucl. Mater.
PD DEC 31
PY 2010
VL 407
IS 3
BP 178
EP 188
DI 10.1016/j.jnucmat.2010.10.011
PG 11
WC Materials Science, Multidisciplinary; Nuclear Science & Technology
SC Materials Science; Nuclear Science & Technology
GA 701XT
UT WOS:000285859200007
ER

PT J
AU Bock, J
   Fukuyo, Y
   Kang, S
   Phipps, ML
   Alexandrov, LB
   Rasmussen, KO
   Bishop, AR
   Rosen, ED
   Martinez, JS
   Chen, HT
   Rodriguez, G
   Alexandrov, BS
   Usheva, A
AF Bock, Jonathan
   Fukuyo, Yayoi
   Kang, Sona
   Phipps, M. Lisa
   Alexandrov, Ludmil B.
   Rasmussen, Kim O.
   Bishop, Alan R.
   Rosen, Evan D.
   Martinez, Jennifer S.
   Chen, Hou-Tong
   Rodriguez, George
   Alexandrov, Boian S.
   Usheva, Anny
TI Mammalian Stem Cells Reprogramming in Response to Terahertz Radiation
SO PLOS ONE
LA English
DT Article
ID GENE-EXPRESSION; TRANSCRIPTION INITIATION; NUCLEAR RECEPTOR;
   BINDING-PROTEIN; DNA; ADIPOGENESIS; SPECTROSCOPY; ACTIVATION; DYNAMICS;
   MODEL
AB We report that extended exposure to broad-spectrum terahertz radiation results in specific changes in cellular functions that are closely related to DNA-directed gene transcription. Our gene chip survey of gene expression shows that whereas 89% of the protein coding genes in mouse stem cells do not respond to the applied terahertz radiation, certain genes are activated, while other are repressed. RT-PCR experiments with selected gene probes corresponding to transcripts in the three groups of genes detail the gene specific effect. The response was not only gene specific but also irradiation conditions dependent. Our findings suggest that the applied terahertz irradiation accelerates cell differentiation toward adipose phenotype by activating the transcription factor peroxisome proliferator-activated receptor gamma (PPARG). Finally, our molecular dynamics computer simulations indicate that the local breathing dynamics of the PPARG promoter DNA coincides with the gene specific response to the THz radiation. We propose that THz radiation is a potential tool for cellular reprogramming.
C1 [Bock, Jonathan; Fukuyo, Yayoi; Kang, Sona; Alexandrov, Ludmil B.; Rosen, Evan D.; Usheva, Anny] Harvard Univ, Beth Israel Deaconess Med Ctr, Sch Med, Dept Med, Boston, MA 02215 USA.
   [Phipps, M. Lisa; Martinez, Jennifer S.; Chen, Hou-Tong; Rodriguez, George] Los Alamos Natl Lab, Ctr Integrated Nanotechnol, Los Alamos, NM USA.
   [Rasmussen, Kim O.; Bishop, Alan R.; Alexandrov, Boian S.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM USA.
RP Bock, J (reprint author), Harvard Univ, Beth Israel Deaconess Med Ctr, Sch Med, Dept Med, Boston, MA 02215 USA.
EM ausheva@bidmc.harvard.edu
RI Rasmussen, Kim/B-5464-2009; Chen, Hou-Tong/C-6860-2009; Alexandrov,
   Boian/D-2488-2010; Alexandrov, Ludmil/B-6582-2014; Rodriguez,
   George/G-7571-2012
OI Rasmussen, Kim/0000-0002-4029-4723; Chen, Hou-Tong/0000-0003-2014-7571;
   Alexandrov, Boian/0000-0001-8636-4603; Alexandrov,
   Ludmil/0000-0003-3596-4515; Rodriguez, George/0000-0002-6044-9462
FU U.S. Department of Energy, Office of Basic Energy Sciences [DE-
   AC52-06NA25396]; Sandia National Laboratories [DE- AC04-94AL85000]; NIH
   [R01GM73911]; Richard and Susan Smith Family Foundation [ADA
   1-08-PPG-02]; NIH ARRA supplement [3R01GM73911-4S1]
FX This work was performed, in part, at the Center for Integrated
   Nanotechnologies, U.S. Department of Energy, Office of Basic Energy
   Sciences user facility at Los Alamos National Laboratory (Contract DE-
   AC52-06NA25396) and Sandia National Laboratories (Contract DE-
   AC04-94AL85000); NIH grants R01GM73911; NIH ARRA supplement
   (3R01GM73911-4S1); Richard and Susan Smith Family Foundation Pinnacle
   Award ADA 1-08-PPG-02. The funders had no role in study design, data
   collection and analysis, decision to publish, or preparation of the
   manuscript.
NR 35
TC 40
Z9 43
U1 1
U2 31
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 185 BERRY ST, STE 1300, SAN FRANCISCO, CA 94107 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 31
PY 2010
VL 5
IS 12
AR e15806
DI 10.1371/journal.pone.0015806
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 701RA
UT WOS:000285838900036
PM 21209821
ER

PT J
AU Liu, KJ
   Gary, SP
   Winske, D
AF Liu, Kaijun
   Gary, S. Peter
   Winske, Dan
TI Heliosheath fluctuations near the perpendicular termination shock:
   Two-dimensional hybrid simulations
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID CYCLOTRON ANISOTROPY INSTABILITIES; NUMBER PLASMA INTERACTIONS;
   INTERSTELLAR PICKUP IONS; BOUNDARY EXPLORER IBEX; SOLAR-WIND;
   COLLISIONLESS SHOCKS; MAGNETIC-FIELDS; MAGNETOSHEATH; ACCELERATION;
   DOWNSTREAM
AB The two-dimensional Los Alamos hybrid simulation code is used to study the excitation of fluctuations and the associated ion dynamics at the high Alfven-Mach heliospheric termination shock and in the near-shock heliosheath. This simulation represents the electrons as a zero-mass fluid, addresses only a perpendicular shock, and considers the upstream ions to consist of a cool solar wind component and a more energetic pickup component. The shock yields two strongly heated downstream components: the more dense thermals and the more tenuous suprathermals, each with strong T(perpendicular to) > T(parallel to) anisotropies. In the downstream, relatively homogeneous sheath plasma, linear dispersion theory predicts that each component anisotropy drives both the Alfven-cyclotron instability and the proton mirror instability. The simulation demonstrates that Alfven-cyclotron modes dominate mirror-like modes in the downstream, in contrast to earlier two-dimensional hybrid simulations of high-Mach quasi-perpendicular shocks without pickup ions, in which the Alfven-cyclotron and mirror modes were excited to comparable intensities. A hypothesis is presented that the presence of pickup ions implies a relatively low magnetosonic Mach number at termination shocks, thereby favoring the excitation of the Alfven-cyclotron instability. The primary consequence of wave-particle interactions from this instability is pitch angle scattering, so the energetic part of the ion perpendicular velocity distribution in the heliosheath is depleted by comparison with the distribution computed from a comparable one-dimensional hybrid simulation.
C1 [Liu, Kaijun; Gary, S. Peter; Winske, Dan] Los Alamos Natl Lab, Grp ISR 1, Los Alamos, NM 87545 USA.
RP Liu, KJ (reprint author), Los Alamos Natl Lab, Grp ISR 1, Mail Stop D466, Los Alamos, NM 87545 USA.
EM kaijun@lanl.gov; pgary@lanl.gov; winske@lanl.gov
RI Dong, Li/F-4931-2010
FU U.S. Department of Energy (DOE); National Aeronautics and Space
   Administration
FX This work was performed under the auspices of the U.S. Department of
   Energy (DOE). It was supported by the Solar and Heliospheric Physics
   SR&T Program of the National Aeronautics and Space Administration.
NR 50
TC 2
Z9 2
U1 1
U2 4
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0148-0227
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 30
PY 2010
VL 115
AR A12114
DI 10.1029/2010JA015694
PG 12
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 701RF
UT WOS:000285839400002
ER

PT J
AU McLerran, L
AF McLerran, Larry
TI STRONGLY INTERACTING MATTER AT HIGH ENERGY DENSITY
SO INTERNATIONAL JOURNAL OF MODERN PHYSICS A
LA English
DT Review
ID GAUGE VECTOR-MESONS; GLUON DISTRIBUTION-FUNCTIONS; HEAVY-ION COLLISIONS;
   GROUND-STATE ENERGY; FINITE TEMPERATURE; NUCLEAR COLLISIONS; QUARK
   LIBERATION; MONTE-CARLO; TRANSVERSE-MOMENTUM; SMALL-X
AB This lecture concerns the properties of strongly interacting matter (which is described by Quantum Chromodynamics) at very high energy density. I review the properties of matter at high temperature, discussing the deconfinement phase transition. At high baryon density and low temperature, large N(c) arguments are developed which suggest that high baryonic density matter is a third form of matter, Quarkyonic Matter, that is distinct from confined hadronic matter and deconfined matter. I finally discuss the Color Glass Condensate which controls the high energy limit of QCD, and forms the low x part of a hadron wave function. The Glasma is introduced as matter formed by the Color Glass Condensate which eventually thermalizes into a Quark Gluon Plasma.
C1 [McLerran, Larry] Brookhaven Natl Lab, Riken Brookhaven Ctr, Upton, NY 11973 USA.
   [McLerran, Larry] Brookhaven Natl Lab, Dept Phys, Upton, NY 11973 USA.
RP McLerran, L (reprint author), Brookhaven Natl Lab, Riken Brookhaven Ctr, Upton, NY 11973 USA.
FU US Department of Energy [DE-AC02-98CH0886]
FX This manuscript has been authorized under Contract No. DE-AC02-98CH0886
   with the US Department of Energy.
NR 73
TC 6
Z9 6
U1 0
U2 2
PU WORLD SCIENTIFIC PUBL CO PTE LTD
PI SINGAPORE
PA 5 TOH TUCK LINK, SINGAPORE 596224, SINGAPORE
SN 0217-751X
J9 INT J MOD PHYS A
JI Int. J. Mod. Phys. A
PD DEC 30
PY 2010
VL 25
IS 32
BP 5847
EP 5864
DI 10.1142/S0217751X10051335
PG 18
WC Physics, Nuclear; Physics, Particles & Fields
SC Physics
GA 735PL
UT WOS:000288429300003
ER

PT J
AU Kimball, DFJ
   Boyd, A
   Budker, D
AF Kimball, D. F. Jackson
   Boyd, Alec
   Budker, D.
TI Constraints on anomalous spin-spin interactions from spin-exchange
   collisions
SO PHYSICAL REVIEW A
LA English
DT Article
ID FOREIGN GAS NUCLEI; ENERGY CURVES; CP INVARIANCE; TORSION; SEARCH; HE;
   POTENTIALS; PARTICLE; GRAVITY; SYSTEMS
AB A comparison between existing measurements and calculated cross sections for spin exchange between alkali-metal atoms and noble gases (specifically sodium and helium) is used to constrain anomalous spin-dependent forces between nuclei at the atomic scale (similar to 10(-8) cm). Combined with existing stringent limits on anomalous short-range, spin-dependent couplings of the proton, the dimensionless coupling constant for an axial vector interaction of the neutron arising from exchange of a boson of mass less than or similar to 100 eV is constrained to be g(A)(n)/root 4 pi(h) over barc < 2 x 10(-3). Constraints are established for a velocity-and spin-dependent interaction alpha (I . v)(K . v), where I and K are the nuclear spins of He and Na, respectively, and v is the relative velocity of the atoms. Constraints on torsion gravity are also considered.
C1 [Kimball, D. F. Jackson] Calif State Univ E Bay, Dept Phys, Hayward, CA 94542 USA.
   [Boyd, Alec] Pomona Coll, Dept Phys & Astron, Claremont, CA 91711 USA.
   [Budker, D.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Budker, D.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Nucl Sci, Berkeley, CA 94720 USA.
RP Kimball, DFJ (reprint author), Calif State Univ E Bay, Dept Phys, Hayward, CA 94542 USA.
EM derek.jacksonkimball@csueastbay.edu
RI Budker, Dmitry/F-7580-2016
OI Budker, Dmitry/0000-0002-7356-4814
FU National Science Foundation [PHY-0652824, PHY-0969666]; California State
   University-East Bay
FX The authors are grateful for enlightening conversations with Thad
   Walker, Micah Ledbetter, and Timur Tscherbul. This work has been
   supported by Grants PHY-0652824 and PHY-0969666 from the National
   Science Foundation and Faculty Support Grants from California State
   University-East Bay.
NR 50
TC 8
Z9 8
U1 0
U2 6
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2469-9926
EI 2469-9934
J9 PHYS REV A
JI Phys. Rev. A
PD DEC 30
PY 2010
VL 82
IS 6
AR 062714
DI 10.1103/PhysRevA.82.062714
PG 5
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 713OP
UT WOS:000286747600004
ER

PT J
AU Deng, SHM
   Vane, CR
   Bannister, ME
   Fogle, M
AF Deng, S. H. M.
   Vane, C. R.
   Bannister, M. E.
   Fogle, M.
TI Electron-impact dissociation of ozone cations O-3(+)
SO PHYSICAL REVIEW A
LA English
DT Article
ID CROSS-SECTIONS; PHOTOELECTRON-SPECTROSCOPY; IONS; IONIZATION;
   PHOTOIONIZATION; COLLISIONS; ENERGY; STATES; O3+
AB Absolute cross sections for electron-impact dissociation of O-3(+) ions yielding O+ and O-2(+) fragment ions have been measured using a crossed electron-ion beams method for energies from about 3 eV to 100 eV. While the O-2(+) channel dominates the dissociation cross section over the measured energy range, a strong enhancement is observed in the O+ channel at low energy.
C1 [Deng, S. H. M.; Vane, C. R.; Bannister, M. E.] Oak Ridge Natl Lab, Div Phys, Oak Ridge, TN 37831 USA.
   [Fogle, M.] Auburn Univ, Dept Phys, Auburn, AL 36849 USA.
RP Deng, SHM (reprint author), Oak Ridge Natl Lab, Div Phys, Oak Ridge, TN 37831 USA.
RI Deng, Shihu/H-8053-2012; 
OI Bannister, Mark E./0000-0002-9572-8154
FU Office of Fusion Energy Sciences; Division of Chemical Sciences,
   Geosciences, and Biosciences, Office of Basic Energy Sciences of the US
   Department of Energy; Auburn University Office of the Vice President for
   Research, College of Science and Mathematics and Department of Physics;
   ORNL
FX This research was supported in part by the Office of Fusion Energy
   Sciences and the Division of Chemical Sciences, Geosciences, and
   Biosciences, Office of Basic Energy Sciences of the US Department of
   Energy. One of the authors (S.D.) gratefully acknowledges support from
   the ORNL Postdoctoral Research Associates Program administered jointly
   by the Oak Ridge Institute for Science and Education and Oak Ridge
   National Laboratory. M. F. would like to acknowledge support from the
   Auburn University Office of the Vice President for Research, College of
   Science and Mathematics and Department of Physics.
NR 31
TC 3
Z9 3
U1 2
U2 11
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1050-2947
J9 PHYS REV A
JI Phys. Rev. A
PD DEC 30
PY 2010
VL 82
IS 6
AR 062715
DI 10.1103/PhysRevA.82.062715
PG 4
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 713OP
UT WOS:000286747600005
ER

PT J
AU Wang, LJ
   Exarhos, GJ
AF Wang, Lisa J.
   Exarhos, Gregory J.
TI Persistent conductivity in post-growth doped ZnO films following pulsed
   UV laser irradiation
SO THIN SOLID FILMS
LA English
DT Article; Proceedings Paper
CT 37th International Conference on Metallurgical Coatings and Thin Films
CY APR 26-30, 2010
CL San Diego, CA
SP Amer Vacuum Soc, Adv Surface Engn Div
DE Laser irradiation; ZnO; TCO film; Conductivity; Raman spectroscopy
ID ZINC-OXIDE; THIN-FILMS; TRANSPARENT; SINGLE; LAYER; RAMAN
AB Solution and rf sputter deposited doped ZnO films were subjected to cumulative 4-ns pulses of 355 nm light from a pulsed Nd:YAG laser at fluences between 5 and 150 mJ/cm(2). Film densification, change in refractive index, and an increase in conductivity were observed following room temperature irradiation in air, a carbon monoxide reducing environment, or under vacuum. At fluences between 20 and 80 mJ/cm(2), the films did not damage catastrophically under irradiation and high visible transparency persisted. The increase in conductivity is attributed to creation of oxygen vacancies and subsequent promotion of free carriers into the conduction band. Effects were most pronounced for films treated in vacuum. All treated films became insulating again upon equilibration in air at room temperature after several days. Films were characterized by means of UV-VIS-NIR transmission spectroscopy, Raman spectroscopy, and Hall measurements. Analysis of interference fringes in measured transmission spectra allowed evaluation of optical properties. Raman measurements showed an increase of LO mode intensity with respect to TO mode intensity as the films became more conducting in accord with previous work. Results of this study are not only important for continued development of transparent conducting oxides, but also provide compelling evidence for the role of free carriers as initiators of laser damage in wide bandgap metal oxide films. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Exarhos, Gregory J.] Pacific NW Natl Lab, Chem & Mat Sci Div, Richland, WA 99352 USA.
   [Wang, Lisa J.] Carleton Coll, Dept Chem, Northfield, MN 55057 USA.
RP Exarhos, GJ (reprint author), Pacific NW Natl Lab, Chem & Mat Sci Div, Richland, WA 99352 USA.
EM greg.exarhos@pnl.gov
NR 41
TC 3
Z9 3
U1 2
U2 12
PU ELSEVIER SCIENCE SA
PI LAUSANNE
PA PO BOX 564, 1001 LAUSANNE, SWITZERLAND
SN 0040-6090
J9 THIN SOLID FILMS
JI Thin Solid Films
PD DEC 30
PY 2010
VL 519
IS 5
SI SI
BP 1495
EP 1500
DI 10.1016/j.tsf.2010.04.118
PG 6
WC Materials Science, Multidisciplinary; Materials Science, Coatings &
   Films; Physics, Applied; Physics, Condensed Matter
SC Materials Science; Physics
GA 707SA
UT WOS:000286305100003
ER

PT J
AU Deng, XY
   Lee, J
   Wang, CJ
   Matranga, C
   Aksoy, F
   Liu, Z
AF Deng, Xingyi
   Lee, Junseok
   Wang, Congjun
   Matranga, Christopher
   Aksoy, Funda
   Liu, Zhi
TI Reactivity Differences of Nanocrystals and Continuous Films of
   alpha-Fe2O3 on Au(111) Studied with In Situ X-ray Photoelectron
   Spectroscopy
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID WATER-GAS-SHIFT; REACTION-MECHANISM; SURFACE-CHEMISTRY; CATALYSTS;
   ADSORPTION; CO; NANOPARTICLES; GROWTH; OXIDATION; REACTANT
AB The interaction of CO with nanocrystals and continuous films of alpha-Fe2O3 grown on Au(111) was investigated using in situ X-ray photoelectron spectroscopy (XPS) at near ambient pressure (200 mTorr) and scanning tunneling microscopy (STM). Adsorbed CO was detected by XPS when alpha-Fe2O3 nanocrystals (6-7 nm) grown on Au( Ill) were exposed to 200 mTorr of the gas at room temperature. Under a low H2O background, surface bound hydroxyl groups (adsorbed OH) were also noted on these alpha-Fe2O3 nanocrystals as a result of H2O dissociation on the edges of the particles. Adsorbed formate (HCOO-) was detected during heating to 373 K and believed to originate from the reaction of adsorbed CO with the OH groups. The adsorbed formate desorbed or decomposed above 473 K. Continuous alpha-Fe2O3 thin films on Au(111) were inert under the same conditions studied for nanocrystalline alpha-Fe2O3. Specifically, neither adsorbed CO nor OH groups were observed for the continuous films of alpha-Fe2O3. This reactivity difference can be explained by the presence of alpha-Fe2O3 crystal edges and the interface which exists between the alpha-Fe2O3 nanocrystals and the Au(111) substrate. These edges and interfaces are present for the nanocrystalline alpha-Fe2O3/Au(111) system but are not present in significant amounts for the continuous films of alpha-Fe2O3. The implications of these experimental results for the water-gas shift reaction will be also discussed.
C1 [Deng, Xingyi; Lee, Junseok; Wang, Congjun; Matranga, Christopher] US DOE, Natl Energy Technol Lab, Pittsburgh, PA 15236 USA.
   [Deng, Xingyi; Lee, Junseok; Wang, Congjun] URS, South Pk, PA 15129 USA.
   [Aksoy, Funda; Liu, Zhi] Univ Calif Berkeley, Lawrence Berkeley Lab, Adv Light Source, Berkeley, CA 94720 USA.
   [Aksoy, Funda] Cukurova Univ, Dept Phys, TR-01330 Adana, Turkey.
RP Deng, XY (reprint author), US DOE, Natl Energy Technol Lab, POB 10940, Pittsburgh, PA 15236 USA.
EM Xingyi.Deng@netl.doe.gov
RI Wang, Congjun/A-9608-2010; Liu, Zhi/B-3642-2009; Matranga,
   Christopher/E-4741-2015; 
OI Liu, Zhi/0000-0002-8973-6561; Matranga, Christopher/0000-0001-7082-5938;
   Deng, Xingyi/0000-0001-9109-1443
FU National Energy Technology Laboratory under RES [DE-FE0000400]; Office
   of Science, Office of Basic Energy Sciences, of the US Department of
   Energy [DE-AC02-05CH11231]
FX This technical effort was performed in support of the National Energy
   Technology Laboratory's ongoing research under the RES contract
   DE-FE0000400. The Advanced Light Source is supported by the Director,
   Office of Science, Office of Basic Energy Sciences, of the US Department
   of Energy under Contract No. DE-AC02-05CH11231. Reference in this work
   to any specific commercial product is to facilitate understanding and
   does not necessarily imply endorsement by the US Department of Energy.
NR 34
TC 18
Z9 19
U1 2
U2 35
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 30
PY 2010
VL 114
IS 51
BP 22619
EP 22623
DI 10.1021/jp1085697
PG 5
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 696NB
UT WOS:000285447000035
ER

PT J
AU Tang, M
   Carter, WC
   Belak, JF
   Chiang, YM
AF Tang, Ming
   Carter, W. Craig
   Belak, James F.
   Chiang, Yet-Ming
TI Modeling the competing phase transition pathways in nanoscale olivine
   electrodes
SO ELECTROCHIMICA ACTA
LA English
DT Article
DE Lithium-ion battery cathodes; Olivines; Amorphization; Overpotential;
   Diffuse-interface model
ID RECHARGEABLE LITHIUM BATTERIES; MISCIBILITY GAP; TRANSFORMATION;
   TEMPERATURE; SIZE; LIXFEPO4; CATHODES; STORAGE; ALLOYS; ENERGY
AB Recent experimental developments reveal that nanoscale lithium iron phosphate (LiFePO4) olivine particles exhibit very different phase transition behavior from the bulk olivine phase. A crystalline-to-amorphous phase transition has been observed in nanosized particles in competition with the equilibrium phase transition between the lithium-rich and lithium-poor olivine phases. Here we apply a diffuse-interface (phase-field) model to study the kinetics of the different phase transition pathways in nanosized LiFePO4 particles upon delithiation. We find that the nucleation and growth kinetics of the crystalline-to-crystalline and crystalline-to-amorphous phase transformations are sensitive to the applied electrical overpotential and particle size, which collectively determine the preferred phase transition pathway. While the crystalline-to-crystalline phase transition is favored by either faster nucleation or growth kinetics at low or high overpotentials, particle amorphization dominates at intermediate overpotentials. Decreasing particle size expands the overpotential region in which amorphization is preferred. The asymmetry in the nucleation energy barriers for amorphization and recrystallization results in a phase transition hysteresis that should promote the accumulation of the amorphous phase in electrodes after repeated electrochemical cycling. The predicted overpotential- and size-dependent phase transition behavior of nanoscale LiFePO4 particles is consistent with experimental observations. Published by Elsevier Ltd.
C1 [Tang, Ming; Belak, James F.] Lawrence Livermore Natl Lab, Condensed Matter & Mat Div, Livermore, CA 94550 USA.
   [Carter, W. Craig; Chiang, Yet-Ming] MIT, Dept Mat Sci & Engn, Cambridge, MA 02139 USA.
RP Tang, M (reprint author), Lawrence Livermore Natl Lab, Condensed Matter & Mat Div, Livermore, CA 94550 USA.
EM tang25@llnl.gov
RI Carter, W/K-2406-2012
FU U.S. Department of Energy by Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; Lawrence Postdoctoral Fellowship; U.S. Department
   of Energy [DE-SC0002626]
FX The research work of MT and JFB was performed under the auspices of the
   U.S. Department of Energy by Lawrence Livermore National Laboratory
   under Contract No. DE-AC52-07NA27344. MT is grateful for the financial
   support by the Lawrence Postdoctoral Fellowship. WCC and YMC acknowledge
   the financial support of U.S. Department of Energy Grant No.
   DE-SC0002626. We thank Nonglak Meethong and Yu-Hua Kao for many helpful
   discussions. We also acknowledge helpful comments from the anonymous
   reviewers.
NR 40
TC 26
Z9 26
U1 2
U2 56
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0013-4686
EI 1873-3859
J9 ELECTROCHIM ACTA
JI Electrochim. Acta
PD DEC 30
PY 2010
VL 56
IS 2
BP 969
EP 976
DI 10.1016/j.electacta.2010.09.027
PG 8
WC Electrochemistry
SC Electrochemistry
GA 692TL
UT WOS:000285177900047
ER

PT J
AU Scovazzi, G
   Love, E
AF Scovazzi, G.
   Love, E.
TI A generalized view on Galilean invariance in stabilized compressible
   flow computations
SO INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS
LA English
DT Article; Proceedings Paper
CT 15th International Conference on Finite Elements in Flow Problems
CY APR 01-03, 2009
CL Tokyo, JAPAN
DE variational multi-scale methods; stabilized methods; SUPG methods;
   Galilean transformations; invariance
ID FINITE-ELEMENT FORMULATION; NAVIER-STOKES EQUATIONS; VARIATIONAL
   MULTISCALE METHOD; LARGE-EDDY SIMULATION; INCOMPRESSIBLE FLOWS;
   FLUID-DYNAMICS; CONSERVATION VARIABLES; WAVE-EQUATION; GALERKIN; EULER
AB This article presents a generalized analysis on the significance of Galilean invariance in compressible flow computations with stabilized and variational multi-scale methods. The understanding of the key issues and the development of general approaches to Galilean-invariant stabilization are facilitated by the use of a matrix-operator description of Galilean transformations. The analysis of invariance for discontinuity capturing operators is also included. Published in 2010 by John Wiley & Sons, Ltd.
C1 [Scovazzi, G.; Love, E.] Sandia Natl Labs, Computat Shock & Multiphys Dept 1431, Albuquerque, NM 87185 USA.
RP Scovazzi, G (reprint author), Sandia Natl Labs, Computat Shock & Multiphys Dept 1431, POB 5800,MS 1319, Albuquerque, NM 87185 USA.
EM gscovaz@sandia.gov
NR 35
TC 11
Z9 11
U1 0
U2 5
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0271-2091
J9 INT J NUMER METH FL
JI Int. J. Numer. Methods Fluids
PD DEC 30
PY 2010
VL 64
IS 10-12
BP 1065
EP 1083
DI 10.1002/fld.2417
PG 19
WC Computer Science, Interdisciplinary Applications; Mathematics,
   Interdisciplinary Applications; Mechanics; Physics, Fluids & Plasmas
SC Computer Science; Mathematics; Mechanics; Physics
GA 693YN
UT WOS:000285261400002
ER

PT J
AU Lin, PT
   Shadid, JN
   Tuminaro, RS
   Sala, M
   Hennigan, GL
   Pawlowski, RP
AF Lin, Paul T.
   Shadid, John N.
   Tuminaro, Raymond S.
   Sala, Marzio
   Hennigan, Gary L.
   Pawlowski, Roger P.
TI A parallel fully coupled algebraic multilevel preconditioner applied to
   multiphysics PDE applications: Drift-diffusion, flow/transport/reaction,
   resistive MHD
SO INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS
LA English
DT Article; Proceedings Paper
CT 15th International Conference on Finite Elements in Flow Problems
CY APR 01-03, 2009
CL Tokyo, JAPAN
DE multilevel preconditioners; algebraic multigrid; finite element methods;
   Newton-Krylov; Schwarz domain decomposition preconditioners; graph
   partitioning
ID DOMAIN DECOMPOSITION PRECONDITIONERS; NEWTON-KRYLOV METHODS;
   STABILIZATION PARAMETERS; SMOOTHED AGGREGATION; INCOMPRESSIBLE-FLOW;
   SYSTEMS; PERFORMANCE; FORMULATION; EQUATIONS; COMPUTATIONS
AB This study considers the performance of a fully coupled algebraic multilevel preconditioner for Newton-Krylov solution methods. The performance of the preconditioner is demonstrated on a set of challenging multiphysics partial differential equation (PDE) applications: a drift-diffusion approximation for semiconductor devices; a low Mach number formulation for the simulation of coupled flow, transport and non-equilibrium chemical reactions; and a low Mach number formulation for visco-resistive magnetohydrodynamics (MHD) systems. These systems contain multiple physical mechanisms that are strongly coupled, highly nonlinear, non-symmetric and produce solutions with multiple length-and time-scales. In the context of this study the governing PDEs for these systems are discretized in space by a stabilized finite element (FE) method that collocates all unknowns at each node of the FE mesh. The algebraic multilevel preconditioner is based on an aggressive-coarsening graph-partitioning of the non-zero block structure of the Jacobian matrix. The performance of the algebraic multilevel preconditioner is compared with a standard variable overlap additive Schwarz domain decomposition preconditioner. Representative performance and parallel scaling results are presented for a set of direct-to-steady-state and fully implicit transient solutions. The performance studies include parallel weak scaling studies on up to 4096 cores and also includes the solution of systems as large as two billion unknowns carried out on 24 000 cores of a Cray XT3/4. In general, the results of this study indicate that on this reasonably diverse set of challenging multiphysics applications the algebraic multilevel preconditioner performs very well. Copyright (C) 2010 John Wiley & Sons, Ltd.
C1 [Lin, Paul T.; Shadid, John N.; Hennigan, Gary L.; Pawlowski, Roger P.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
   [Tuminaro, Raymond S.] Sandia Natl Labs, Livermore, CA 94551 USA.
   [Sala, Marzio] BMW Sauber, Hinwil, Switzerland.
RP Lin, PT (reprint author), Sandia Natl Labs, POB 5800,MS 0316, Albuquerque, NM 87185 USA.
EM ptlin@sandia.gov
NR 69
TC 12
Z9 12
U1 0
U2 11
PU WILEY-BLACKWELL
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN 07030-5774, NJ USA
SN 0271-2091
EI 1097-0363
J9 INT J NUMER METH FL
JI Int. J. Numer. Methods Fluids
PD DEC 30
PY 2010
VL 64
IS 10-12
BP 1148
EP 1179
DI 10.1002/fld.2402
PG 32
WC Computer Science, Interdisciplinary Applications; Mathematics,
   Interdisciplinary Applications; Mechanics; Physics, Fluids & Plasmas
SC Computer Science; Mathematics; Mechanics; Physics
GA 693YN
UT WOS:000285261400006
ER

PT J
AU Li, FY
   Ramaswamy, V
   Ginoux, P
   Broccoli, AJ
   Delworth, T
   Zeng, FR
AF Li, Fuyu
   Ramaswamy, V.
   Ginoux, Paul
   Broccoli, Anthony J.
   Delworth, Thomas
   Zeng, Fanrong
TI Toward understanding the dust deposition in Antarctica during the Last
   Glacial Maximum: Sensitivity studies on plausible causes
SO JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES
LA English
DT Article
ID C ICE-CORE; EAST ANTARCTICA; DOME-C; ATMOSPHERIC CO2; CLIMATE-CHANGE;
   MODEL; CIRCULATION; SIMULATION; VOSTOK; RECORD
AB Understanding the plausible causes for the observed high dust concentrations in Antarctic ice cores during the Last Glacial Maximum (LGM) is crucial for interpreting the Antarctic dust records in the past climates and could provide insights into dust variability in future climates. Using the Geophysical Fluid Dynamics Laboratory (GFDL) General Circulation Models, we conduct an investigation into the various factors modulating dust emission, transport, and deposition, with a view toward an improved quantification of the LGM dust enhancements in the Antarctic ice cores. The model simulations show that the expansion of source areas and changes in the Antarctic ice accumulation rates together can account for most of the observed increase of dust concentrations in the Vostok, Dome C, and Taylor Dome cores, but there is an overestimate of the LGM/present ratio in the case of the Byrd core. The source expansion due to the lowering of sea level yields a factor of 2-3 higher contribution than that due to the reduction of continental vegetation. The changes in other climate parameters (e.g., SH precipitation change) are estimated to be relatively less important within the context of this sensitivity study, while the model-simulated LGM surface winds yield a 20%-30% reduction rather than an increase in dust deposition in Antarctica. This research yields insights toward a fundamental understanding of the causes for the significant enhancement of the dust deposition in the Antarctic ice cores during the LGM.
C1 [Li, Fuyu] Princeton Univ, Program Atmospher & Ocean Sci, Princeton, NJ 08544 USA.
   [Ramaswamy, V.; Ginoux, Paul; Delworth, Thomas] NOAA, Geophys Fluid Dynam Lab, Princeton, NJ 08452 USA.
   [Broccoli, Anthony J.] Rutgers State Univ, Ctr Environm Predict, New Brunswick, NJ 08901 USA.
   [Broccoli, Anthony J.] Rutgers State Univ, Dept Environm Sci, New Brunswick, NJ 08901 USA.
RP Li, FY (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, 1 Cyclotron Rd,Mail Stop 90R1116, Berkeley, CA 94720 USA.
EM fli@lbl.gov
RI Ginoux, Paul/C-2326-2008; Li, Fuyu/B-9055-2013; Delworth,
   Thomas/C-5191-2014; Broccoli, Anthony/D-9186-2014
OI Ginoux, Paul/0000-0003-3642-2988; Broccoli, Anthony/0000-0003-2619-1434
FU NASA Headquarters [NESSF07]
FX This work was supported by NASA Headquarters under the Earth and Space
   Science Fellowship Program (NESSF07).
NR 49
TC 6
Z9 6
U1 0
U2 14
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-897X
EI 2169-8996
J9 J GEOPHYS RES-ATMOS
JI J. Geophys. Res.-Atmos.
PD DEC 30
PY 2010
VL 115
AR D24120
DI 10.1029/2010JD014791
PG 14
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA 701QO
UT WOS:000285837500004
ER

PT J
AU Juodagalvis, A
   Langanke, K
   Hix, WR
   Martinez-Pinedo, G
   Sampaio, JM
AF Juodagalvis, A.
   Langanke, K.
   Hix, W. R.
   Martinez-Pinedo, G.
   Sampaio, J. M.
TI Improved estimate of electron capture rates on nuclei during stellar
   core collapse
SO NUCLEAR PHYSICS A
LA English
DT Article
DE Electron capture rates; Supernova simulations
ID WEAK-INTERACTION RATES; BOLTZMANN NEUTRINO TRANSPORT;
   RANDOM-PHASE-APPROXIMATION; INTERMEDIATE-MASS NUCLEI; SD-SHELL NUCLEI;
   SHOCK SUPERNOVA MECHANISM; EQUATION-OF-STATE; RATE TABLES; STATISTICAL
   EQUILIBRIUM; POSTBOUNCE EVOLUTION
AB Electron captures on nuclei play an important role in the dynamics of the collapsing core of a massive star that leads to a supernova explosion. Recent calculations of these capture rates were based on microscopic models which account for relevant degrees of freedom. Due to computational restrictions such calculations were limited to a modest number of nuclei, mainly in the mass range A = 45-110. Recent supernova simulations show that this pool of nuclei, however, omits the very neutron-rich and heavy nuclei which dominate the nuclear composition during the last phase of the collapse before neutrino trapping. Assuming that the composition is given by Nuclear Statistical Equilibrium we present here electron capture rates for collapse conditions derived from individual rates for roughly 2700 individual nuclei. For those nuclei which dominate in the early stage of the collapse, the individual rates are derived within the framework of microscopic models, while for the nuclei which dominate at high densities we have derived the rates based on the Random Phase Approximation with a global parametrization of the single particle occupation numbers. In addition, we have improved previous rate evaluations by properly including screening corrections to the reaction rates into account. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Juodagalvis, A.] VU ITPA, LT-01108 Vilnius, Lithuania.
   [Langanke, K.; Martinez-Pinedo, G.] GSI Helmholtzzentrum Schwerionenforsch, D-64291 Darmstadt, Germany.
   [Langanke, K.] Tech Univ Darmstadt, Inst Kernphys, D-64291 Darmstadt, Germany.
   [Langanke, K.] Frankfurt Inst Adv Studies, D-60438 Frankfurt, Germany.
   [Hix, W. R.] Oak Ridge Natl Lab, Div Phys, Oak Ridge, TN 37831 USA.
   [Sampaio, J. M.] CFNUL, P-1649003 Lisbon, Portugal.
RP Juodagalvis, A (reprint author), VU ITPA, A Gostauto St 12, LT-01108 Vilnius, Lithuania.
EM andrius.juodagalvis@tfai.vu.lt
RI Hix, William/E-7896-2011; Martinez-Pinedo, Gabriel/A-1915-2013; Sampaio,
   Jorge/M-4750-2013
OI Hix, William/0000-0002-9481-9126; Martinez-Pinedo,
   Gabriel/0000-0002-3825-0131; Sampaio, Jorge/0000-0003-4359-493X
FU US DOE; EU [FP6-FP7]; Deutsche Forschungsgemeinschaft [SFB 634]; ExtreMe
   Matter Institute EMMI; Helmholtz International Center for FAIR; Office
   of Nuclear Physics, US Department of Energy
FX At the early stage of the project A.J.'s work was partly supported by
   the US DOE through the SciDAC programme "Terascale Supernova Initiative"
   during his stay at GSI, Germany, hospitality of which is appreciated.
   A.J. acknowledges support from the EU FP6-FP7 project "BalticGrid".
   G.M.P. and K.L. acknowledge support by the Deutsche
   Forschungsgemeinschaft through contract SFB 634, by the ExtreMe Matter
   Institute EMMI and by the Helmholtz International Center for FAIR.
   W.R.H. acknowledges support from the Office of Nuclear Physics, US
   Department of Energy. Discussions with Eduardo Bravo about the treatment
   of screening corrections are acknowledged. The computer-net BalticGrid
   infrastructure was used to calculate this huge number of rates and
   spectra.
NR 66
TC 55
Z9 55
U1 0
U2 10
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0375-9474
EI 1873-1554
J9 NUCL PHYS A
JI Nucl. Phys. A
PD DEC 30
PY 2010
VL 848
IS 3-4
BP 454
EP 478
DI 10.1016/j.nuclphysa.2010.09.012
PG 25
WC Physics, Nuclear
SC Physics
GA 696HK
UT WOS:000285432300012
ER

PT J
AU Adare, A
   Afanasiev, S
   Aidala, C
   Ajitanand, NN
   Akiba, Y
   Al-Bataineh, H
   Alexander, J
   Al-Ta'ani, H
   Angerami, A
   Aoki, K
   Apadula, N
   Aphecetche, L
   Aramaki, Y
   Asai, J
   Atomssa, ET
   Averbeck, R
   Awes, TC
   Azmoun, B
   Babintsev, V
   Bai, M
   Baksay, G
   Baksay, L
   Baldisseri, A
   Barish, KN
   Barnes, PD
   Bassalleck, B
   Basye, AT
   Bathe, S
   Batsouli, S
   Baublis, V
   Baumann, C
   Bazilevsky, A
   Belikov, S
   Belmont, R
   Bennett, R
   Berdnikov, A
   Berdnikov, Y
   Bhom, JH
   Bickley, AA
   Blau, DS
   Boissevain, JG
   Bok, JS
   Borel, H
   Borggren, N
   Boyle, K
   Brooks, ML
   Buesching, H
   Bumazhnov, V
   Bunce, G
   Butsyk, S
   Camacho, CM
   Campbell, S
   Caringi, A
   Chang, BS
   Chang, WC
   Charvet, JL
   Chen, CH
   Chernichenko, S
   Chi, CY
   Chiu, M
   Choi, IJ
   Choi, JB
   Choudhury, RK
   Christiansen, P
   Chujo, T
   Chung, P
   Churyn, A
   Chvala, O
   Cianciolo, V
   Citron, Z
   Cole, BA
   del Valle, ZC
   Connors, M
   Constantin, P
   Csanad, M
   Csorgo, T
   Dahms, T
   Dairaku, S
   Danchev, I
   Das, K
   Datta, A
   David, G
   Dayananda, MK
   Denisov, A
   d'Enterria, D
   Deshpande, A
   Desmond, EJ
   Dharmawardane, KV
   Dietzsch, O
   Dion, A
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   Esumi, S
   Eyser, KO
   Fadem, B
   Fields, DE
   Finger, M
   Finger, M
   Fleuret, F
   Fokin, SL
   Fraenkel, Z
   Frantz, JE
   Franz, A
   Frawley, AD
   Fujiwara, K
   Fukao, Y
   Fusayasu, T
   Garishvili, I
   Glenn, A
   Gong, H
   Gonin, M
   Gosset, J
   Goto, Y
   de Cassagnac, RG
   Grau, N
   Greene, SV
   Grim, G
   Perdekamp, MG
   Gunji, T
   Gustafsson, HA
   Henni, AH
   Haggerty, JS
   Hahn, KI
   Hamagaki, H
   Hamblen, J
   Hanks, J
   Han, R
   Hartouni, EP
   Haruna, K
   Haslum, E
   Hayano, R
   Heffner, M
   Hemmick, TK
   Hester, T
   He, X
   Hill, JC
   Hohlmann, M
   Holzmann, W
   Homma, K
   Hong, B
   Horaguchi, T
   Hornback, D
   Huang, S
   Ichihara, T
   Ichimiya, R
   Iinuma, H
   Ikeda, Y
   Imai, K
   Imrek, J
   Inaba, M
   Isenhower, D
   Ishihara, M
   Isobe, T
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   Isupov, A
   Ivanischev, D
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   Jacak, BV
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   Joo, KS
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   Jumper, DS
   Kajihara, F
   Kametani, S
   Kamihara, N
   Kamin, J
   Kang, JH
   Kapustinsky, J
   Karatsu, K
   Kasai, M
   Kawall, D
   Kawashima, M
   Kazantsev, AV
   Kempel, T
   Khanzadeev, A
   Kijima, KM
   Kikuchi, J
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   Kim, BI
   Kim, DH
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   Kim, EJ
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   Kiss, A
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   Klay, J
   Klein-Boesing, C
   Kochenda, L
   Komkov, B
   Konno, M
   Koster, J
   Kozlov, A
   Kral, A
   Kravitz, A
   Kunde, GJ
   Kurita, K
   Kurosawa, M
   Kweon, MJ
   Kwon, Y
   Kyle, GS
   Lacey, R
   Lai, YS
   Lajoie, JG
   Layton, D
   Lebedev, A
   Lee, DM
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   Lee, KB
   Lee, KS
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   Leitch, MJ
   Leite, MAL
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   Lichtenwalner, P
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   Manko, VI
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   Masui, H
   Matathias, F
   McCumber, M
   McGaughey, PL
   Means, N
   Meredith, B
   Miake, Y
   Mibe, T
   Mignerey, AC
   Mikes, P
   Miki, K
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   Mishra, M
   Mitchell, JT
   Mohanty, AK
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   Nakamiya, Y
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   Park, IH
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AF Adare, A.
   Afanasiev, S.
   Aidala, C.
   Ajitanand, N. N.
   Akiba, Y.
   Al-Bataineh, H.
   Alexander, J.
   Al-Ta'ani, H.
   Angerami, A.
   Aoki, K.
   Apadula, N.
   Aphecetche, L.
   Aramaki, Y.
   Asai, J.
   Atomssa, E. T.
   Averbeck, R.
   Awes, T. C.
   Azmoun, B.
   Babintsev, V.
   Bai, M.
   Baksay, G.
   Baksay, L.
   Baldisseri, A.
   Barish, K. N.
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   Bassalleck, B.
   Basye, A. T.
   Bathe, S.
   Batsouli, S.
   Baublis, V.
   Baumann, C.
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   Belikov, S.
   Belmont, R.
   Bennett, R.
   Berdnikov, A.
   Berdnikov, Y.
   Bhom, J. H.
   Bickley, A. A.
   Blau, D. S.
   Boissevain, J. G.
   Bok, J. S.
   Borel, H.
   Borggren, N.
   Boyle, K.
   Brooks, M. L.
   Buesching, H.
   Bumazhnov, V.
   Bunce, G.
   Butsyk, S.
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   Chang, B. S.
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   Constantin, P.
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   Dietzsch, O.
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   D'Orazio, L.
   Drapier, O.
   Drees, A.
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   Dubey, A. K.
   Durham, J. M.
   Durum, A.
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   Dzhordzhadze, V.
   Edwards, S.
   Efremenko, Y. V.
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   Hong, B.
   Horaguchi, T.
   Hornback, D.
   Huang, S.
   Ichihara, T.
   Ichimiya, R.
   Iinuma, H.
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   Imrek, J.
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   Ishihara, M.
   Isobe, T.
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   Kametani, S.
   Kamihara, N.
   Kamin, J.
   Kang, J. H.
   Kapustinsky, J.
   Karatsu, K.
   Kasai, M.
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   Kazantsev, A. V.
   Kempel, T.
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   Kijima, K. M.
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   Klay, J.
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   Kochenda, L.
   Komkov, B.
   Konno, M.
   Koster, J.
   Kozlov, A.
   Kral, A.
   Kravitz, A.
   Kunde, G. J.
   Kurita, K.
   Kurosawa, M.
   Kweon, M. J.
   Kwon, Y.
   Kyle, G. S.
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   Liebing, P.
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   Liska, T.
   Litvinenko, A.
   Liu, H.
   Liu, M. X.
   Li, X.
   Love, B.
   Lynch, D.
   Maguire, C. F.
   Makdisi, Y. I.
   Malakhov, A.
   Malik, M. D.
   Manko, V. I.
   Mannel, E.
   Mao, Y.
   Masek, L.
   Masui, H.
   Matathias, F.
   McCumber, M.
   McGaughey, P. L.
   Means, N.
   Meredith, B.
   Miake, Y.
   Mibe, T.
   Mignerey, A. C.
   Mikes, P.
   Miki, K.
   Milov, A.
   Mishra, M.
   Mitchell, J. T.
   Mohanty, A. K.
   Moon, H. J.
   Morino, Y.
   Morreale, A.
   Morrison, D. P.
   Moukhanova, T. V.
   Mukhopadhyay, D.
   Murakami, T.
   Murata, J.
   Nagamiya, S.
   Nagle, J. L.
   Naglis, M.
   Nagy, M. I.
   Nakagawa, I.
   Nakamiya, Y.
   Nakamura, K. R.
   Nakamura, T.
   Nakano, K.
   Nam, S.
   Newby, J.
   Nguyen, M.
   Nihashi, M.
   Niita, T.
   Nouicer, R.
   Nyanin, A. S.
   Oakley, C.
   O'Brien, E.
   Oda, S. X.
   Ogilvie, C. A.
   Okada, K.
   Oka, M.
   Onuki, Y.
   Oskarsson, A.
   Ouchida, M.
   Ozawa, K.
   Pak, R.
   Palounek, A. P. T.
   Pantuev, V.
   Papavassiliou, V.
   Park, I. H.
   Park, J.
   Park, S. K.
   Park, W. J.
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   Pei, H.
   Peng, J. -C.
   Pereira, H.
   Peresedov, V.
   Peressounko, D. Yu.
   Petti, R.
   Pinkenburg, C.
   Pisani, R. P.
   Proissl, M.
   Purschke, M. L.
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   Qu, H.
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CA PHENIX Collaboration
TI Measurement of transverse single-spin asymmetries for J/psi production
   in polarized p plus p collisions at root s=200 GeV
SO PHYSICAL REVIEW D
LA English
DT Article
ID QUANTUM CHROMODYNAMICS; PION-PRODUCTION; ANALYZING POWER; SCATTERING;
   MOMENTUM; NUCLEON; TARGET
AB We report the first measurement of transverse single-spin asymmetries in J/psi production from transversely polarized p + p collisions at root s = 200 GeV with data taken by the PHENIX experiment in 2006 and 2008. The measurement was performed over the rapidity ranges 1.2 < vertical bar y vertical bar < 2.2 and vertical bar y vertical bar < 0.35 for transverse momenta up to 6 GeV/c. J/psi production at the Relativistic Heavy Ion Collider is dominated by processes involving initial-state gluons, and transverse single-spin asymmetries of the J/psi can provide access to gluon dynamics within the nucleon. Such asymmetries may also shed light on the long-standing question in QCD of the J/psi production mechanism. Asymmetries were obtained as a function of J/psi transverse momentum and Feynman-x, with a value of -0.086 +/- 0.026(stat) +/- 0.003(syst) in the forward region. This result suggests possible nonzero trigluon correlation functions in transversely polarized protons and, if well defined in this reaction, a nonzero gluon Sivers distribution function.
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RP Adare, A (reprint author), Univ Colorado, Boulder, CO 80309 USA.
EM jacak@skipper.physics.sunysb.edu
RI Sorensen, Soren /K-1195-2016; Yokkaichi, Satoshi/C-6215-2017; Mignerey,
   Alice/D-6623-2011; seto, richard/G-8467-2011; Csanad, Mate/D-5960-2012;
   Wei, Feng/F-6808-2012; Csorgo, Tamas/I-4183-2012; Tomasek,
   Lukas/G-6370-2014; Blau, Dmitry/H-4523-2012; En'yo, Hideto/B-2440-2015;
   Hayano, Ryugo/F-7889-2012; HAMAGAKI, HIDEKI/G-4899-2014; Durum,
   Artur/C-3027-2014; Taketani, Atsushi/E-1803-2017; Semenov,
   Vitaliy/E-9584-2017
OI Sorensen, Soren /0000-0002-5595-5643; Tomasek,
   Lukas/0000-0002-5224-1936; Hayano, Ryugo/0000-0002-1214-7806; Taketani,
   Atsushi/0000-0002-4776-2315; 
FU Office of Nuclear Physics in the Office of Science of the Department of
   Energy; National Science Foundation; Renaissance Technologies LLC;
   Abilene Christian University Research Council; Research Foundation of
   SUNY; College of Arts and Sciences; Vanderbilt University (USA);
   Ministry of Education, Culture, Sports, Science, and Technology; Japan
   Society for the Promotion of Science (Japan); Conselho Nacional de
   Desenvolvimento Cientifico e Tecnologico; Fundacao de Amparo a Pesquisa
   do Estado de Sao Paulo (Brazil); Natural Science Foundation of China
   (People's Republic of China); Ministry of Education, Youth and Sports
   (Czech Republic); Centre National de la Recherche Scientifique;
   Commissariat a l'Energie Atomique; Institut National de Physique
   Nucleaire et de Physique des Particules (France); Ministry of Industry,
   Science and Tekhnologies; Bundesministerium fur Bildung und Forschung;
   Deutscher Akademischer Austausch Dienst; Alexander von Humboldt Stiftung
   (Germany); Hungarian National Science Fund; OTKA (Hungary); Department
   of Atomic Energy (India); Israel Science Foundation (Israel); National
   Research Foundation; Ministry Education Science and Technology (Korea);
   Ministry of Education and Science; Russia Academy of Sciences; Federal
   Agency of Atomic Energy (Russia); VR; Wallenberg Foundation (Sweden);
   U.S. Civilian Research and Development Foundation for the Independent
   States of the Former Soviet Union; US-Hungarian Fulbright Foundation for
   Educational Exchange; US-Israel Binational Science Foundation
FX We thank the staff of the Collider-Accelerator and Physics Departments
   at Brookhaven National Laboratory and the staff of the other PHENIX
   participating institutions for their vital contributions. We also thank
   Feng Yuan, Jianwei Qiu, Zhongbo Kang, Yuji Koike, Kazuhiro Tanaka, and
   Jian Zhou for helpful discussions. We acknowledge support from the
   Office of Nuclear Physics in the Office of Science of the Department of
   Energy, the National Science Foundation, a sponsored research grant from
   Renaissance Technologies LLC, Abilene Christian University Research
   Council, Research Foundation of SUNY, and Dean of the College of Arts
   and Sciences, Vanderbilt University (USA); Ministry of Education,
   Culture, Sports, Science, and Technology and the Japan Society for the
   Promotion of Science (Japan); Conselho Nacional de Desenvolvimento
   Cientifico e Tecnologico and Fundacao de Amparo a Pesquisa do Estado de
   Sao Paulo (Brazil), Natural Science Foundation of China (People's
   Republic of China); Ministry of Education, Youth and Sports (Czech
   Republic); Centre National de la Recherche Scientifique, Commissariat a
   l'Energie Atomique, and Institut National de Physique Nucleaire et de
   Physique des Particules (France); Ministry of Industry, Science and
   Tekhnologies, Bundesministerium fur Bildung und Forschung, Deutscher
   Akademischer Austausch Dienst, and Alexander von Humboldt Stiftung
   (Germany); Hungarian National Science Fund, OTKA (Hungary); Department
   of Atomic Energy (India); Israel Science Foundation (Israel); National
   Research Foundation and WCU Program of the Ministry Education Science
   and Technology (Korea); Ministry of Education and Science, Russia
   Academy of Sciences, and Federal Agency of Atomic Energy (Russia); VR
   and the Wallenberg Foundation (Sweden); the U.S. Civilian Research and
   Development Foundation for the Independent States of the Former Soviet
   Union; the US-Hungarian Fulbright Foundation for Educational Exchange;
   and the US-Israel Binational Science Foundation.
NR 47
TC 17
Z9 17
U1 6
U2 29
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 30
PY 2010
VL 82
IS 11
AR 112008
DI 10.1103/PhysRevD.82.112008
PG 13
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711HP
UT WOS:000286578000002
ER

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   Sawatzky, B
   Segal, J
   Shabestari, M
   Shahinyan, A
   Shestakov, Y
   Singh, J
   Sirca, S
   Souder, P
   Stepanyan, S
   Stibunov, V
   Sulkosky, V
   Tajima, S
   Tobias, WA
   Udias, JM
   Urciuoli, GM
   Vlahovic, B
   Voskanyan, H
   Wang, K
   Wesselmann, FR
   Vignote, JR
   Wood, SA
   Wright, J
   Yao, H
   Zhu, X
AF Riordan, S.
   Abrahamyan, S.
   Craver, B.
   Kelleher, A.
   Kolarkar, A.
   Miller, J.
   Cates, G. D.
   Liyanage, N.
   Wojtsekhowski, B.
   Acha, A.
   Allada, K.
   Anderson, B.
   Aniol, K. A.
   Annand, J. R. M.
   Arrington, J.
   Averett, T.
   Beck, A.
   Bellis, M.
   Boeglin, W.
   Breuer, H.
   Calarco, J. R.
   Camsonne, A.
   Chen, J. P.
   Chudakov, E.
   Coman, L.
   Crowe, B.
   Cusanno, F.
   Day, D.
   Degtyarenko, P.
   Dolph, P. A. M.
   Dutta, C.
   Ferdi, C.
   Fernandez-Ramirez, C.
   Feuerbach, R.
   Fraile, L. M.
   Franklin, G.
   Frullani, S.
   Fuchs, S.
   Garibaldi, F.
   Gevorgyan, N.
   Gilman, R.
   Glamazdin, A.
   Gomez, J.
   Grimm, K.
   Hansen, J-O
   Herraiz, J. L.
   Higinbotham, D. W.
   Holmes, R.
   Holmstrom, T.
   Howell, D.
   de Jager, C. W.
   Jiang, X.
   Jones, M. K.
   Katich, J.
   Kaufman, L. J.
   Khandaker, M.
   Kelly, J. J.
   Kiselev, D.
   Korsch, W.
   LeRose, J.
   Lindgren, R.
   Markowitz, P.
   Margaziotis, D. J.
   Beck, S. May-Tal
   Mayilyan, S.
   McCormick, K.
   Meziani, Z-E
   Michaels, R.
   Moffit, B.
   Nanda, S.
   Nelyubin, V.
   Ngo, T.
   Nikolenko, D. M.
   Norum, B.
   Pentchev, L.
   Perdrisat, C. F.
   Piasetzky, E.
   Pomatsalyuk, R.
   Protopopescu, D.
   Puckett, A. J. R.
   Punjabi, V. A.
   Qian, X.
   Qiang, Y.
   Quinn, B.
   Rachek, I.
   Ransome, R. D.
   Reimer, P. E.
   Reitz, B.
   Roche, J.
   Ron, G.
   Rondon, O.
   Rosner, G.
   Saha, A.
   Sargsian, M. M.
   Sawatzky, B.
   Segal, J.
   Shabestari, M.
   Shahinyan, A.
   Shestakov, Yu.
   Singh, J.
   Sirca, S.
   Souder, P.
   Stepanyan, S.
   Stibunov, V.
   Sulkosky, V.
   Tajima, S.
   Tobias, W. A.
   Udias, J. M.
   Urciuoli, G. M.
   Vlahovic, B.
   Voskanyan, H.
   Wang, K.
   Wesselmann, F. R.
   Vignote, J. R.
   Wood, S. A.
   Wright, J.
   Yao, H.
   Zhu, X.
TI Measurements of the Electric Form Factor of the Neutron up to Q(2)=3.4
   GeV2 Using the Reaction (3)(He)over-right-arrowe((e)over-right-arrow, e
   ' n)pp
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID GENERALIZED PARTON DISTRIBUTIONS; POLARIZATION TRANSFER; SCATTERING;
   NUCLEON; (GEV/C)(2); HE-3
AB The electric form factor of the neutron was determined from studies of the reaction (3)(He) over right arrowe((e) over right arrow, e ' n)pp in quasielastic kinematics in Hall A at Jefferson Lab. Longitudinally polarized electrons were scattered off a polarized target in which the nuclear polarization was oriented perpendicular to the momentum transfer. The scattered electrons were detected in a magnetic spectrometer in coincidence with neutrons that were registered in a large-solid-angle detector. More than doubling the Q(2) range over which it is known, we find G(E)(n) = 0.0236 +/- 0.0017(stat) +/- 0.0026(syst), 0.0208 +/- 0. 0024 +/- 0.0019, and 0.0147 +/- 0.0020 +/- 0.0014 for Q(2) = 1.72, 2.48, and 3.41 GeV2, respectively.
C1 [Wojtsekhowski, B.; Beck, A.; Camsonne, A.; Chen, J. P.; Chudakov, E.; Degtyarenko, P.; Feuerbach, R.; Gilman, R.; Gomez, J.; Hansen, J-O; Higinbotham, D. W.; de Jager, C. W.; Jones, M. K.; LeRose, J.; Beck, S. May-Tal; Michaels, R.; Nanda, S.; Reitz, B.; Roche, J.; Saha, A.; Segal, J.; Wood, S. A.] Thomas Jefferson Natl Accelerator Facil, Newport News, VA 23606 USA.
   [Riordan, S.; Bellis, M.; Franklin, G.; Quinn, B.] Carnegie Mellon Univ, Pittsburgh, PA 15213 USA.
   [Riordan, S.; Craver, B.; Cates, G. D.; Liyanage, N.; Day, D.; Dolph, P. A. M.; Lindgren, R.; Nelyubin, V.; Norum, B.; Rondon, O.; Shabestari, M.; Singh, J.; Tajima, S.; Tobias, W. A.; Wang, K.] Univ Virginia, Charlottesville, VA 22903 USA.
   [Riordan, S.; Kaufman, L. J.] Univ Massachusetts, Amherst, MA 01003 USA.
   [Abrahamyan, S.; Gevorgyan, N.; Mayilyan, S.; Shahinyan, A.; Voskanyan, H.] Yerevan Phys Inst, Yerevan 375036, Armenia.
   [Kelleher, A.; Averett, T.; Feuerbach, R.; Fuchs, S.; Grimm, K.; Holmstrom, T.; Katich, J.; Moffit, B.; Pentchev, L.; Perdrisat, C. F.; Sulkosky, V.] Coll William & Mary, Williamsburg, VA 23187 USA.
   [Kolarkar, A.; Allada, K.; Dutta, C.; Korsch, W.] Univ Kentucky, Lexington, KY 40506 USA.
   [Miller, J.; Breuer, H.; Kelly, J. J.] Univ Maryland, College Pk, MD 20742 USA.
   [Acha, A.; Boeglin, W.; Coman, L.; Markowitz, P.; Sargsian, M. M.] Florida Int Univ, Miami, FL 33199 USA.
   [Anderson, B.] Kent State Univ, Kent, OH 44242 USA.
   [Aniol, K. A.; Margaziotis, D. J.; Ngo, T.] Calif State Univ Los Angeles, Los Angeles, CA 90032 USA.
   [Annand, J. R. M.; Protopopescu, D.; Rosner, G.] Univ Glasgow, Glasgow G12 8QQ, Lanark, Scotland.
   [Arrington, J.; Reimer, P. E.] Argonne Natl Lab, Div Phys, Argonne, IL 60439 USA.
   [Beck, A.; Beck, S. May-Tal; Puckett, A. J. R.; Qiang, Y.; Sirca, S.; Zhu, X.] MIT, Cambridge, MA 02139 USA.
   [Calarco, J. R.] Univ New Hampshire, Durham, NH 03824 USA.
   [Crowe, B.; Vlahovic, B.] N Carolina Cent Univ, Durham, NC 27707 USA.
   [Cusanno, F.; Frullani, S.; Garibaldi, F.; Urciuoli, G. M.] Ist Nazl Fis Nucl, Grp Sanita Coll, Sez Roma, Rome, Italy.
   [Cusanno, F.; Frullani, S.; Garibaldi, F.; Urciuoli, G. M.] Ist Super Sanita, I-00161 Rome, Italy.
   [Ferdi, C.] Univ Clermont Ferrand, IN2P3, F-63177 Clermont Ferrand, France.
   [Fernandez-Ramirez, C.; Fraile, L. M.; Herraiz, J. L.; Udias, J. M.] Univ Complutense Madrid, Madrid, Spain.
   [Gilman, R.; Jiang, X.; Ransome, R. D.] Rutgers State Univ, Piscataway, NJ 08854 USA.
   [Glamazdin, A.; Pomatsalyuk, R.] Kharkov Phys & Technol Inst, UA-61108 Kharkov, Ukraine.
   [Holmes, R.; Souder, P.] Syracuse Univ, Syracuse, NY 13244 USA.
   [Howell, D.] Univ Illinois, Urbana, IL 61801 USA.
   [Khandaker, M.; Punjabi, V. A.; Wesselmann, F. R.] Norfolk State Univ, Norfolk, VA 23504 USA.
   [Kiselev, D.] Univ Basel, CH-4056 Basel, Switzerland.
   [McCormick, K.; Wright, J.] Old Dominion Univ, Norfolk, VA 23529 USA.
   [Meziani, Z-E; Sawatzky, B.; Yao, H.] Temple Univ, Philadelphia, PA 19122 USA.
   [Nikolenko, D. M.; Rachek, I.; Shestakov, Yu.] Budker Inst Nucl Phys, Novosibirsk 630090, Russia.
   [Piasetzky, E.; Ron, G.] Tel Aviv Univ, IL-69978 Tel Aviv, Israel.
   [Qian, X.] Duke Univ, Durham, NC 27708 USA.
   [Qian, X.] TUNL, Durham, NC 27708 USA.
   [Stepanyan, S.] Kyungpook Natl Univ, Taegu 702701, South Korea.
   [Stibunov, V.] Inst Nucl Phys, Tomsk 634050, Russia.
   [Vignote, J. R.] Inst Estruct Mat, E-28006 Madrid, Spain.
RP Wojtsekhowski, B (reprint author), Thomas Jefferson Natl Accelerator Facil, Newport News, VA 23606 USA.
EM bogdanw@jlab.org
RI Day, Donal/C-5020-2015; LOPEZ HERRAIZ, JOAQUIN/E-9234-2010; Quinn,
   Brian/N-7343-2014; Singh, Jaideep/H-2346-2013; Higinbotham,
   Douglas/J-9394-2014; Franklin, Gregg/N-7743-2014; Fernandez Ramirez,
   Cesar/E-9213-2010; Fraile, Luis/B-8668-2011; Udias, Jose/A-7523-2010;
   Arrington, John/D-1116-2012; Protopopescu, Dan/D-5645-2012; Rondon
   Aramayo, Oscar/B-5880-2013; Reimer, Paul/E-2223-2013
OI Day, Donal/0000-0001-7126-8934; LOPEZ HERRAIZ,
   JOAQUIN/0000-0001-7208-8863; Quinn, Brian/0000-0003-2800-986X; Singh,
   Jaideep/0000-0002-4810-4824; Higinbotham, Douglas/0000-0003-2758-6526;
   Franklin, Gregg/0000-0003-4176-1378; Fernandez Ramirez,
   Cesar/0000-0001-8979-5660; Fraile, Luis/0000-0002-6281-3635; Udias,
   Jose/0000-0003-3714-764X; Arrington, John/0000-0002-0702-1328; 
FU National Science Foundation; U.S. Department of Energy; United Kingdom
   Engineering and Physical Science Research Council; U.S. DOE
   [DE-AC05-060R23177]
FX We thank the Jefferson Lab Hall A technical staff for their outstanding
   support. This work was supported in part by the National Science
   Foundation, the U.S. Department of Energy and the United Kingdom
   Engineering and Physical Science Research Council. Jefferson Science
   Associates, LLC, operates Jefferson Lab for the U.S. DOE under U.S. DOE
   Contract No. DE-AC05-060R23177.
NR 47
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 30
PY 2010
VL 105
IS 26
AR 262302
DI 10.1103/PhysRevLett.105.262302
PG 5
WC Physics, Multidisciplinary
SC Physics
GA 713VZ
UT WOS:000286766800001
PM 21231649
ER

PT J
AU Fehl, DL
   Chandler, GA
   Stygar, WA
   Olson, RE
   Ruiz, CL
   Hohlfelder, JJ
   Mix, LP
   Biggs, F
   Berninger, M
   Frederickson, PO
   Frederickson, R
AF Fehl, D. L.
   Chandler, G. A.
   Stygar, W. A.
   Olson, R. E.
   Ruiz, C. L.
   Hohlfelder, J. J.
   Mix, L. P.
   Biggs, F.
   Berninger, M.
   Frederickson, P. O.
   Frederickson, R.
TI Characterization and error analysis of an N X N unfolding procedure
   applied to filtered, photoelectric x-ray detector arrays. II. Error
   analysis and generalization
SO PHYSICAL REVIEW SPECIAL TOPICS-ACCELERATORS AND BEAMS
LA English
DT Article
ID LINEAR INVERSE PROBLEMS; GROSS EARTH DATA; DISCRETE-DATA; PLASMAS;
   SPECTROMETER; POWER
AB A five-channel, filtered-x-ray-detector (XRD) array has been used to measure time-dependent, soft-x-ray flux emitted by z-pinch plasmas at the Z pulsed-power accelerator (Sandia National Laboratories, Albuquerque, New Mexico, USA). The preceding, companion paper [D. L. Fehl et al., Phys. Rev. ST Accel. Beams 13, 120402 (2010)] describes an algorithm for spectral reconstructions (unfolds) and spectrally integrated flux estimates from data obtained by this instrument. The unfolded spectrum S-unfold(E, t) is based on (N = 5) first-order B-splines (histograms) in contiguous unfold bins j = 1, ... ,N; the recovered x-ray flux F-unfold(t) is estimated as integral S-unfold(E, t)dE, where E is x-ray energy and t is time. This paper adds two major improvements to the preceding unfold analysis: (a) Error analysis.-Both data noise and response-function uncertainties are propagated into S-unfold(E, t) and F-unfold(t). Noise factors nu are derived from simulations to quantify algorithm-induced changes in the noise-to-signal ratio (NSR) for S-unfold in each unfold bin j and for F-unfold (nu equivalent to NSRoutput/NSRinput): for S-unfold, 1 less than or similar to nu(j) less than or similar to 30, an outcome that is strongly spectrally dependent; for F-unfold, 0.6 less than or similar to nu(F) less than or similar to 1, a result that is less spectrally sensitive and corroborated independently. For nominal z-pinch experiments, the combined uncertainty (noise and calibrations) in F-unfold(t) at peak is estimated to be similar to 15%. (b) Generalization of the unfold method.-Spectral sensitivities (called here passband functions) are constructed for Sunfold and Funfold. Predicting how the unfold algorithm reconstructs arbitrary spectra is thereby reduced to quadratures. These tools allow one to understand and quantitatively predict algorithmic distortions (including negative artifacts), to identify potentially troublesome spectra, and to design more useful response functions.
C1 [Fehl, D. L.; Chandler, G. A.; Stygar, W. A.; Olson, R. E.; Ruiz, C. L.; Hohlfelder, J. J.; Mix, L. P.; Biggs, F.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
   [Berninger, M.; Frederickson, P. O.; Frederickson, R.] Natl Secur Technol LLC, Los Alamos, NM 87544 USA.
RP Fehl, DL (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
FU United States Department of Energy [DE-AC04-94AL85000]
FX This work was performed by Sandia National Laboratories. Sandia is a
   multiprogram laboratory operated by Sandia Corporation, a Lockheed
   Martin Company, for the United States Department of Energy under
   Contract No. DE-AC04-94AL85000. We also wish to thank the reviewers of
   this article for their patience, insights, and helpful suggestions.
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SN 1098-4402
J9 PHYS REV SPEC TOP-AC
JI Phys. Rev. Spec. Top.-Accel. Beams
PD DEC 30
PY 2010
VL 13
IS 12
AR 120403
DI 10.1103/PhysRevSTAB.13.120403
PG 20
WC Physics, Nuclear; Physics, Particles & Fields
SC Physics
GA 701DB
UT WOS:000285793400002
ER

PT J
AU Fehl, DL
   Chandler, GA
   Stygar, WA
   Olson, RE
   Ruiz, CL
   Hohlfelder, JJ
   Mix, LP
   Biggs, F
   Berninger, M
   Frederickson, PO
   Frederickson, R
AF Fehl, D. L.
   Chandler, G. A.
   Stygar, W. A.
   Olson, R. E.
   Ruiz, C. L.
   Hohlfelder, J. J.
   Mix, L. P.
   Biggs, F.
   Berninger, M.
   Frederickson, P. O.
   Frederickson, R.
TI Characterization and error analysis of an N X N unfolding procedure
   applied to filtered, photoelectric x-ray detector arrays. I. Formulation
   and testing
SO PHYSICAL REVIEW SPECIAL TOPICS-ACCELERATORS AND BEAMS
LA English
DT Article
ID FREDHOLM INTEGRAL-EQUATIONS; INERTIAL CONFINEMENT FUSION; LINEAR INVERSE
   PROBLEMS; LASER-PRODUCED PLASMAS; Z-PINCH EXPERIMENTS; GROSS EARTH DATA;
   DISCRETE-DATA; RADIATION; SPECTROMETER; TEMPERATURES
AB An algorithm for spectral reconstructions (unfolds) and spectrally integrated flux estimates from data obtained by a five-channel, filtered x-ray-detector array (XRD) is described in detail and characterized. This diagnostic is a broad-channel spectrometer, used primarily to measure time-dependent soft x-ray flux emitted by z-pinch plasmas at the Z pulsed-power accelerator (Sandia National Laboratories, Albuquerque, New Mexico, USA), and serves as both a plasma probe and a gauge of accelerator performance. The unfold method, suitable for online analysis, arises naturally from general assumptions about the x-ray source and spectral properties of the channel responses; a priori constraints control the ill-posed nature of the inversion. The unfolded spectrum is not assumed to be Planckian. This study is divided into two consecutive papers. This paper considers three major issues: (a) Formulation of the unfold method.-The mathematical background, assumptions, and procedures leading to the algorithm are described: the spectral reconstruction S-unfold(E,t)-five histogram x-ray bins j over the x-ray interval, 137 <= E <= 2300 eV at each time step t-depends on the shape and overlap of the calibrated channel responses and on the maximum electrical power delivered to the plasma. The x-ray flux F-unfold is estimated as integral S-unfold(E, t)dE. (b) Validation with simulations.-Tests of the unfold algorithm with known static and time-varying spectra are described. These spectra included-but were not limited to-Planckian spectra S-bb(E, T) (25 <= T <= 250 eV), from which noise-free channel data were simulated and unfolded. For Planckian simulations with 125 <= T <= 250 eV and typical responses, the binwise unfold values S-j and the corresponding binwise averages < S-bb >(j) agreed to similar to 20%, except where S-bb << max{S-bb}. Occasionally, unfold values S-j less than or similar to 0 (artifacts) were encountered. The algorithm recovered greater than or similar to 90% of the x-ray flux over the wider range, 75 <= T <= 250 eV. For lower T, the test and unfolded spectra increasingly diverged as larger fractions of S-bb(E, T) fell below the detection threshold (similar to 137 eV) of the diagnostic. (c) Comparison with other analyses and diagnostics.-The results of the histogram algorithm are compared with other analyses, including a test with data acquired by the DANTE filtered-XRD array at the NOVA laser facility. Overall, the histogram algorithm is found to be most useful for x-ray flux estimates, as opposed to spectral details. The following companion paper [D. L. Fehl et al., Phys. Rev. ST Accel. Beams 13, 120403 (2010)] considers (a) uncertainties in S-unfold and F-unfold induced by both data noise and calibrational errors in the response functions; and (b) generalization of the algorithm to arbitrary spectra. These techniques apply to other diagnostics with analogous channel responses and supported by unfold algorithms of invertible matrix form.
C1 [Fehl, D. L.; Chandler, G. A.; Stygar, W. A.; Olson, R. E.; Ruiz, C. L.; Hohlfelder, J. J.; Mix, L. P.; Biggs, F.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
   [Berninger, M.; Frederickson, P. O.; Frederickson, R.] Natl Secur Technol LLC, Los Alamos, NM 87544 USA.
RP Fehl, DL (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
FU United States Department of Energy [DE-AC04-94AL85000]
FX It is a pleasure to note the contributions of Harry Kornblum (Lawrence
   Livermore Laboratories), Tom Tunnel (NSTech), Ray Dukart, Jim Bailey,
   and especially Ray Leeper. We are also grateful to our reviewers for
   their comments and for additional references. This work was performed by
   Sandia National Laboratories. Sandia is a multiprogram laboratory
   operated by Sandia Corporation, a Lockheed Martin Company, for the
   United States Department of Energy under Contract No. DE-AC04-94AL85000.
NR 122
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-4402
J9 PHYS REV SPEC TOP-AC
JI Phys. Rev. Spec. Top.-Accel. Beams
PD DEC 30
PY 2010
VL 13
IS 12
AR 120402
DI 10.1103/PhysRevSTAB.13.120402
PG 26
WC Physics, Nuclear; Physics, Particles & Fields
SC Physics
GA 701DB
UT WOS:000285793400001
ER

PT J
AU Zhao, X
   Geng, RL
   Tyagi, PV
   Hayano, H
   Kato, S
   Nishiwaki, M
   Saeki, T
   Sawabe, M
AF Zhao, Xin
   Geng, Rong-Li
   Tyagi, P. V.
   Hayano, Hitoshi
   Kato, Shigeki
   Nishiwaki, Michiru
   Saeki, Takayuki
   Sawabe, Motoaki
TI Surface characterization of Nb samples electropolished with real
   superconducting rf accelerator cavities
SO PHYSICAL REVIEW SPECIAL TOPICS-ACCELERATORS AND BEAMS
LA English
DT Article
ID FIELD-EMISSION; NIOBIUM
AB We report the results of surface characterizations of niobium (Nb) samples electropolished together with a single cell superconducting radio-frequency accelerator cavity. These witness samples were located in three regions of the cavity, namely at the equator, the iris, and the beam pipe. Auger electron spectroscopy was utilized to probe the chemical composition of the topmost four atomic layers. Scanning electron microscopy with energy dispersive x ray for elemental analysis was used to observe the surface topography and chemical composition at the micrometer scale. A few atomic layers of sulfur (S) were found covering the samples nonuniformly. Niobium oxide granules with a sharp geometry were observed on every sample. Some Nb-O granules appeared to also contain sulfur.
C1 [Zhao, Xin; Geng, Rong-Li] Thomas Jefferson Natl Accelerator Facil, Newport News, VA 23606 USA.
   [Tyagi, P. V.; Kato, Shigeki] Grad Univ Adv Studies, Sch Adv Sci GUAS AS, Ibaraki, Japan.
   [Hayano, Hitoshi; Kato, Shigeki; Nishiwaki, Michiru; Saeki, Takayuki; Sawabe, Motoaki] High Energy Accelerator Res Org KEK, Ibaraki, Japan.
RP Zhao, X (reprint author), Thomas Jefferson Natl Accelerator Facil, Newport News, VA 23606 USA.
EM xinzhao@jlab.org
FU U.S. DOE [DE-AC05-06OR23177]
FX We acknowledge Dr. Seo Kang of Norfolk State University for his support
   on AES experiments. We thank the College of William & Mary for the
   support on SEM experiments. This manuscript has been sponsored by
   Jefferson Science Associates, LLC under U.S. DOE Contract No.
   DE-AC05-06OR23177.
NR 11
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-4402
J9 PHYS REV SPEC TOP-AC
JI Phys. Rev. Spec. Top.-Accel. Beams
PD DEC 30
PY 2010
VL 13
IS 12
AR 124702
DI 10.1103/PhysRevSTAB.13.124702
PG 7
WC Physics, Nuclear; Physics, Particles & Fields
SC Physics
GA 701DB
UT WOS:000285793400003
ER

PT J
AU Trabert, E
   Clementson, J
   Beiersdorfer, P
   Santana, JA
   Ishikawa, Y
AF Traebert, Elmar
   Clementson, Joel
   Beiersdorfer, Peter
   Santana, Juan A.
   Ishikawa, Yasuyuki
TI Extreme-ultraviolet spectra of highly charged Pt ions with several
   valence-shell electrons: Observation and accurate calculations
SO PHYSICAL REVIEW A
LA English
DT Article
ID ZN-LIKE IONS; X-RAY-SPECTRA; CU-LIKE IONS; ENERGY-LEVELS; NA-LIKE;
   LI-LIKE; TRANSITION-PROBABILITIES; 2S(1/2)-2P(3/2) LEVELS; LAMB SHIFT;
   EBIT DATA
AB Previous observations of Cu- through Ge-like high-Z ions have demonstrated that accurate measurements and theory agree well for ions with a single valence electron but that additional electrons in the valence shell cause progressively worsening computational problems. We have obtained highly resolved euv spectra of Pt (Z = 78) ions in an electron-beam ion trap. The measured wavelengths are compared to the results of a number of recent large-scale calculations, including our own multireference Moller-Plesset computations. The latter calculations match the best for Cu- and Zn-like ions and represent an order-of-magnitude improvement in predictive accuracy for Ga- and Ge-like ions.
C1 [Traebert, Elmar; Clementson, Joel; Beiersdorfer, Peter] Lawrence Livermore Natl Lab, Div Phys, Livermore, CA 94550 USA.
   [Traebert, Elmar] Ruhr Univ Bochum, Fak Phys & Astron, Astron Inst, D-44780 Bochum, Germany.
   [Santana, Juan A.; Ishikawa, Yasuyuki] Univ Puerto Rico, Dept Chem, San Juan, PR 00931 USA.
   [Santana, Juan A.; Ishikawa, Yasuyuki] Univ Puerto Rico, Chem Phys Program, San Juan, PR 00931 USA.
RP Trabert, E (reprint author), Lawrence Livermore Natl Lab, Div Phys, Livermore, CA 94550 USA.
EM traebert@astro.rub.de
RI Santana, Juan A./G-4329-2011
OI Santana, Juan A./0000-0003-2349-6312
FU Deutsche Forschungsgemeinschaft (DFG); US Department of Energy by
   Lawrence Livermore National Laboratory [DE-AC52-07NA27344]
FX E. T. acknowledges support by the Deutsche Forschungsgemeinschaft (DFG).
   Some of this work was performed under the auspices of the US Department
   of Energy by Lawrence Livermore National Laboratory under Contract No.
   DE-AC52-07NA27344.
NR 58
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PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1050-2947
J9 PHYS REV A
JI Phys. Rev. A
PD DEC 29
PY 2010
VL 82
IS 6
AR 062519
DI 10.1103/PhysRevA.82.062519
PG 6
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 713OI
UT WOS:000286746900005
ER

PT J
AU Zou, RQ
   Zhong, RQ
   Han, SB
   Xu, HW
   Burrell, AK
   Henson, N
   Cape, JL
   Hickmott, DD
   Timofeeva, TV
   Larson, TE
   Zhao, YS
AF Zou, Ruqiang
   Zhong, Ruiqin
   Han, Songbai
   Xu, Hongwu
   Burrell, Anthony K.
   Henson, Neil
   Cape, Jonathan L.
   Hickmott, Donald D.
   Timofeeva, Tatiana V.
   Larson, Toti E.
   Zhao, Yusheng
TI A Porous Metal-Organic Replica of alpha-PbO2 for Capture of Nerve Agent
   Surrogate
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID ZEOLITIC IMIDAZOLATE FRAMEWORKS; SPACE GAUSSIAN PSEUDOPOTENTIALS;
   COORDINATION POLYMERS; SURFACE-AREAS; ADSORPTION; TOPOLOGIES; STRATEGY;
   DESIGN; SITES; ACID
AB A novel metal-organic replica of alpha-PbO2 exhibits high capacity for capture of nerve agent surrogate.
C1 [Zou, Ruqiang] Peking Univ, Dept Adv Mat & Nanotechnol, Dept Energy & Resources Engn, Coll Engn, Beijing 100871, Peoples R China.
   [Zou, Ruqiang; Zhong, Ruiqin; Xu, Hongwu; Burrell, Anthony K.; Henson, Neil; Cape, Jonathan L.; Hickmott, Donald D.; Larson, Toti E.; Zhao, Yusheng] Los Alamos Natl Lab, Div Earth & Environm Sci, Los Alamos Neutron Sci Ctr, Mat Phys & Applicat Div, Los Alamos, NM 87545 USA.
   [Zou, Ruqiang; Zhong, Ruiqin; Xu, Hongwu; Burrell, Anthony K.; Henson, Neil; Cape, Jonathan L.; Hickmott, Donald D.; Larson, Toti E.; Zhao, Yusheng] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM USA.
   [Han, Songbai] China Inst Atom Energy, Neutron Scattering Lab, Beijing 102413, Peoples R China.
   [Timofeeva, Tatiana V.] New Mexico Highlands Univ, Dept Chem, Las Vegas, NM 87701 USA.
RP Zou, RQ (reprint author), Peking Univ, Dept Adv Mat & Nanotechnol, Dept Energy & Resources Engn, Coll Engn, Beijing 100871, Peoples R China.
EM rzou@pku.edu.cn; tlarson@lanl.gov; yzhao@lanl.gov
RI Hickmott, Donald/C-2886-2011; Lujan Center, LANL/G-4896-2012; zou,
   ruqiang/N-8803-2013; 
OI Larson, Toti/0000-0002-2291-5979; Xu, Hongwu/0000-0002-0793-6923;
   Henson, Neil/0000-0002-1842-7884; Zou, Ruqiang/0000-0003-0456-4615
FU National Basic Research Program of China [2009CB939902]; LANL
   [20080780PRD2]
FX This work was financially supported by the National Basic Research
   Program of China (No. 2009CB939902) and LANL Director's funded
   postdoctoral LDRD Project # 20080780PRD2. We also would like to express
   our sincere thanks to the reviewers for their comments and constructive
   suggestions.
NR 34
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U2 52
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 29
PY 2010
VL 132
IS 51
BP 17996
EP 17999
DI 10.1021/ja101440z
PG 4
WC Chemistry, Multidisciplinary
SC Chemistry
GA 701LF
UT WOS:000285818700007
PM 21138256
ER

PT J
AU Campbell, PG
   Abbey, ER
   Neiner, D
   Grant, DJ
   Dixon, DA
   Liu, SY
AF Campbell, Patrick G.
   Abbey, Eric R.
   Neiner, Doinita
   Grant, Daniel J.
   Dixon, David A.
   Liu, Shih-Yuan
TI Resonance Stabilization Energy of 1,2-Azaborines: A Quantitative
   Experimental Study by Reaction Calorimetry
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID HOMOGENEOUS HYDROGENATION; SUBSTITUTED 1,2-DIHYDRO-1,2-AZABORINES;
   ELECTRON DELOCALIZATION; C-C; B-N; AROMATICITY; OLEFINS; ACETYLENES;
   BENZENE; SYSTEMS
AB Aromatic and single-olefin six-membered BN heterocycles were synthesized, and the heats of hydrogenation were measured calorimetrically. A comparison of the hydrogenation enthalpies of these compounds revealed that 1,2-azaborines have a resonance stabilization energy of 16.6 +/- 1.3 kcal/mol, in good agreement with calculated values.
C1 [Campbell, Patrick G.; Abbey, Eric R.; Liu, Shih-Yuan] Univ Oregon, Dept Chem, Eugene, OR 97403 USA.
   [Neiner, Doinita] Pacific NW Natl Lab, Fundamental Sci Div, Richland, WA 99352 USA.
   [Grant, Daniel J.; Dixon, David A.] Univ Alabama, Dept Chem, Tuscaloosa, AL 35487 USA.
RP Liu, SY (reprint author), Univ Oregon, Dept Chem, Eugene, OR 97403 USA.
EM lsy@uoregon.edu
RI Liu, Shih-Yuan/J-7813-2012; 
OI Liu, Shih-Yuan/0000-0003-3148-9147; Campbell,
   Patrick/0000-0003-0167-4624
FU U.S. Department of Energy [DE-FG36-08GO18143]; Department of Energy,
   Office of Energy Efficiency and Renewable Energy [DE-PS36-03GO93013]
FX The calorimetric measurements were made at Pacific Northwest National
   Laboratory (PNNL). We thank Dr. Tom Autrey, Dr. John Linehan, Dr. Abhi
   Karkamkar, and Dr. Kshitij Parab at PNNL for their help with the
   calorimetric measurements. Support for this work was provided by the
   U.S. Department of Energy (DE-FG36-08GO18143). Funding was provided in
   part by the Department of Energy, Office of Energy Efficiency and
   Renewable Energy, under the Hydrogen Storage Grand Challenge
   (Solicitation DE-PS36-03GO93013). This work was done as part of the
   Chemical Hydrogen Storage Center. D.A.D. is indebted to the Robert
   Ramsay Endowment of the University of Alabama. Dr. Monica Valiliu is
   thanked for computational data collection.
NR 40
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U1 3
U2 17
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 29
PY 2010
VL 132
IS 51
BP 18048
EP 18050
DI 10.1021/ja109596m
PG 3
WC Chemistry, Multidisciplinary
SC Chemistry
GA 701LF
UT WOS:000285818700022
PM 21141893
ER

PT J
AU Harman, WH
   Harris, TD
   Freedman, DE
   Fong, H
   Chang, A
   Rinehart, JD
   Ozarowski, A
   Sougrati, MT
   Grandjean, F
   Long, GJ
   Long, JR
   Chang, CJ
AF Harman, W. Hill
   Harris, T. David
   Freedman, Danna E.
   Fong, Henry
   Chang, Alicia
   Rinehart, Jeffrey D.
   Ozarowski, Andrew
   Sougrati, Moulay T.
   Grandjean, Fernande
   Long, Gary J.
   Long, Jeffrey R.
   Chang, Christopher J.
TI Slow Magnetic Relaxation in a Family of Trigonal Pyramidal Iron(II)
   Pyrrolide Complexes
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID SINGLE-MOLECULE MAGNETS; ELECTRON-PARAMAGNETIC-RESONANCE; ORBITAL
   ANGULAR-MOMENTUM; TRANSITION-METAL IONS; HIGH-SPIN MOLECULES;
   HIGH-VALENT IRON; SPECTROSCOPIC CHARACTERIZATION; 3-COORDINATE NICKEL;
   IMIDO COMPLEXES; NITRIDO COMPLEX
AB We present a family of trigonal pyramidal iron(II) complexes supported by tris(pyrrolyl-alpha-methyl)amine ligands of the general formula [M(solv)(n)][(tpa(R))Fe] (M = Na, R = tert-butyl (1), phenyl (4); M = K, R = mesityl (2), 2,4,6-triisopropylphenyl (3), 2,6-difluorophenyl (5)) and their characterization by X-ray crystallography, Mossbauer spectroscopy, and high-field EPR spectroscopy. Expanding on the discovery of slow magnetic relaxation in the recently reported mesityl derivative 2, this homologous series of high-spin iron(II) complexes enables an initial probe of how the ligand field influences the static and dynamic magnetic behavior. Magnetization experiments reveal large, uniaxial zero-field splitting parameters of D = -48, -44, -30, -26, and -6.2 cm(-1) for 1-5, respectively, demonstrating that the strength of axial magnetic anisotropy scales with increasing ligand field strength at the iron(II) center. In the case of 2,6-difluorophenyl substituted 5, high-field EPR experiments provide an independent determination of the zero-field splitting parameter (D = -4.397(9) cm(-1)) that is in reasonable agreement with that obtained from fits to magnetization data. Ac magnetic susceptibility measurements indicate field-dependent, thermally activated spin reversal barriers in complexes 1, 2, and 4 of U-eff = 65, 42, and 25 cm(-1), respectively, with the barrier of 1 constituting the highest relaxation barrier yet observed for a mononuclear transition metal complex. In addition, in the case of 1, the large range of temperatures in which slow relaxation is observed has enabled us to fit the entire Arrhenius curve simultaneously to three distinct relaxation processes. Finally, zero-field Mossbauer spectra collected for 1 and 4 also reveal the presence of slow magnetic relaxation, with two independent relaxation barriers in 4 corresponding to the barrier obtained from ac susceptibility data and to the 3D energy gap between the M-S = +/- 2 and +/- 1 levels, respectively.
C1 [Long, Gary J.] Univ Missouri, Missouri Univ Sci & Technol, Dept Chem, Rolla, MO 65409 USA.
   [Harman, W. Hill; Harris, T. David; Freedman, Danna E.; Fong, Henry; Chang, Alicia; Rinehart, Jeffrey D.; Long, Jeffrey R.; Chang, Christopher J.] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
   [Chang, Christopher J.] Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USA.
   [Harman, W. Hill; Chang, Christopher J.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Chem Sci, Berkeley, CA 94720 USA.
   [Sougrati, Moulay T.; Grandjean, Fernande] Univ Liege, Dept Phys, B-4000 Sart Tilman Par Liege, Belgium.
   [Ozarowski, Andrew] Florida State Univ, Natl High Magnet Field Lab, Tallahassee, FL 32310 USA.
RP Long, GJ (reprint author), Univ Missouri, Missouri Univ Sci & Technol, Dept Chem, Rolla, MO 65409 USA.
EM glong@mst.edu; jrlong@berkeley.edu; chrischang@berkeley.edu
RI Harris, David/M-9204-2014; Sougrati, Moulay Tahar/B-6283-2011; 
OI Harris, David/0000-0003-4144-900X; Sougrati, Moulay
   Tahar/0000-0003-3740-2807; Freedman, Danna/0000-0002-2579-8835
FU Packard foundation; DOE/LBNL [403801]; NSF [CHE-0617063, DMR-0654118];
   FNRS-Belgium [9.456595, 1.5.064.05]; Arkema; Tyco Electronics; State of
   Florida; DOE
FX We thank the Packard foundation (C.J.C.), DOE/LBNL (403801 to C.J.C.),
   the NSF (CHE-0617063 to J.R.L.), and the FNRS-Belgium (9.456595 and
   1.5.064.05 to F.G.) for funding this work. We also thank Arkema (W.H.H.)
   as well as Tyco Electronics (T.D.H. and D.E.F.) for graduate fellowship
   support. C.J.C. is an Investigator with the Howard Hughes Medical
   Institute. The NHMFL is funded by the NSF through the Cooperative
   Agreement No. DMR-0654118, the State of Florida, and the DOE. F.G.
   thanks Prof. R. Cloots for the use of his controlled atmosphere glove
   box.
NR 102
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U1 10
U2 94
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 29
PY 2010
VL 132
IS 51
BP 18115
EP 18126
DI 10.1021/ja105291x
PG 12
WC Chemistry, Multidisciplinary
SC Chemistry
GA 701LF
UT WOS:000285818700030
PM 21141856
ER

PT J
AU Tinberg, CE
   Tonzetich, ZJ
   Wang, HX
   Do, LH
   Yoda, Y
   Cramer, SP
   Lippard, SJ
AF Tinberg, Christine E.
   Tonzetich, Zachary J.
   Wang, Hongxin
   Do, Loi H.
   Yoda, Yoshitaka
   Cramer, Stephen P.
   Lippard, Stephen J.
TI Characterization of Iron Dinitrosyl Species Formed in the Reaction of
   Nitric Oxide with a Biological Rieske Center
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID THIOL-CONTAINING LIGANDS; RESONANCE VIBRATIONAL SPECTROSCOPY;
   ELECTRON-SPIN RESONANCE; DNA-REPAIR RESPONSE; ESCHERICHIA-COLI; NITROSYL
   COMPLEXES; 2FE-2S CLUSTERS; MITOCHONDRIAL ACONITASES; ACTIVATED
   MACROPHAGES; SULFUR CLUSTERS
AB Reactions of nitric oxide with cysteine-ligated iron-sulfur cluster proteins typically result in disassembly of the iron-sulfur core and formation of dinitrosyl iron complexes (DNICs). Here we report the first evidence that DNICs also form in the reaction of NO with Rieske-type [2Fe-2S] clusters. Upon treatment of a Rieske protein, component C of toluene/o-xylene monooxygenase from Pseudomonas sp. OX1, with an excess of NO(g) or NO-generators S-nitroso-N-acetyl-D,L-pencillamine and diethylamine NONOate, the absorbance bands of the [2Fe-2S] cluster are extinguished and replaced by a new feature that slowly grows in at 367 nm. Analysis of the reaction products by electron paramagnetic resonance, Mossbauer, and nuclear resonance vibrational spectroscopy reveals that the primary product of the reaction is a thiolate-bridged diiron tetranitrosyl species, [Fe(2)(mu-SCys)(2)(NO)(4)], having a Roussin's red ester (RRE) formula, and that mononuclear DNICs account for only a minor fraction of nitrosylated iron. Reduction of this RRE reaction product with sodium dithionite produces the one-electron-reduced ARE, having absorptions at 640 and 960 nm. These results demonstrate that NO reacts readily with a Rieske center in a protein and suggest that dinuclear RRE species, not mononuclear DNICs, may be the primary iron dinitrosyl species responsible for the pathological and physiological effects of nitric oxide in such systems in biology.
C1 [Tinberg, Christine E.; Tonzetich, Zachary J.; Do, Loi H.; Lippard, Stephen J.] MIT, Dept Chem, Cambridge, MA 02139 USA.
   [Wang, Hongxin; Cramer, Stephen P.] Univ Calif Berkeley, Lawrence Berkeley Lab, Phys Biosci Div, Berkeley, CA 94720 USA.
   [Yoda, Yoshitaka] Japan Synchrotron Radiat Res Inst, Sayo, Hyogo 6795198, Japan.
   [Cramer, Stephen P.] Univ Calif Davis, Dept Appl Sci, Davis, CA 95616 USA.
RP Lippard, SJ (reprint author), MIT, Dept Chem, Cambridge, MA 02139 USA.
EM lippard@mit.edu
OI Tonzetich, Zachary/0000-0001-7010-8007
FU National Science Foundation; National Institute of General Medical
   Sciences (NIGMS) [GM032134, GM065440, T32 GM08334, 1 F32 GM082031-03];
   Department of Energy (DOE OBER); JST (CREST)
FX This work was funded by the National Science Foundation and grant
   GM032134 from the National Institute of General Medical Sciences
   (NIGMS). S.P.C. thanks the Department of Energy (DOE OBER) and the NIGMS
   (GM065440) for financial support. C.E.T. received partial support from
   the NIGMS under Interdepartmental Biotechnology Training Grant T32
   GM08334. Z.J.T. thanks the NIGMS for a postdoctoral fellowship (1 F32
   GM082031-03). The high-resolution monochromator at SPring-8 was upgraded
   with funding from JST (CREST).
NR 71
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U1 0
U2 39
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 29
PY 2010
VL 132
IS 51
BP 18168
EP 18176
DI 10.1021/ja106290p
PG 9
WC Chemistry, Multidisciplinary
SC Chemistry
GA 701LF
UT WOS:000285818700035
PM 21133361
ER

PT J
AU Owen, JS
   Chan, EM
   Liu, HT
   Alivisatos, AP
AF Owen, Jonathan S.
   Chan, Emory M.
   Liu, Haitao
   Alivisatos, A. Paul
TI Precursor Conversion Kinetics and the Nucleation of Cadmium Selenide
   Nanocrystals
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID SILVER-HALIDE PARTICLES; CDSE QUANTUM DOTS; SEMICONDUCTOR NANOCRYSTALS;
   II-VI; EXTINCTION COEFFICIENT; LIQUID PARAFFIN; GROWTH-KINETICS;
   IDENTIFICATION; CHEMISTRY; RODS
AB The kinetics of cadmium selenide (CdSe) nanocrystal formation was studied using UV-visible absorption spectroscopy integrated with an automated, high-throughput synthesis platform. Reaction of anhydrous cadmium octadecylphosphonate (Cd-ODPA) with alkylphosphine selenides (1, tri-n-octylphosphine selenide; 2, di-n-butylphenylphosphine selenide; 3, n-butyldiphenylphosphine selenide) in recrystallized tri-n-octylphosphine oxide was monitored by following the absorbance of CdSe at lambda = 350 nm, where the extinction coefficient is independent of size, and the disappearance of the selenium precursor using {(1)H}(31)P NMR spectroscopy. Our results indicate that precursor conversion limits the rate of nanocrystal nucleation and growth. The initial precursor conversion rate (Q(o)) depends linearly on [1] (Q(0)(1) = 3.0-36 mu M/s) and decreases as the number of aryl groups bound to phosphorus increases (1 > 2 > 3). Changes to Q(o) influence the final number of nanocrystals and thus control particle size. Using similar methods, we show that changing [ODPA] has a negligible influence on precursor reactivity while increasing the growth rate of nuclei, thereby decreasing the final number of nanocrystals. These results are interpreted in light of a mechanism where the precursors react in an irreversible step that supplies the reaction medium with a solute form of the semiconductor.
C1 [Alivisatos, A. Paul] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
RP Alivisatos, AP (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
EM alivis@berkeley.edu
RI Alivisatos , Paul /N-8863-2015; 
OI Alivisatos , Paul /0000-0001-6895-9048; Owen,
   Jonathan/0000-0001-5502-3267
FU American Chemical Society; Office of Science, Office of Basic Energy
   Sciences of the U.S. Department of Energy [DE-AC02-78105CH11231];
   Physical Chemistry of Semiconductor Nanocrystals Program; Office of
   Science, Office of Basic Energy Sciences, Materials Sciences and
   Engineering Division of the U.S. Department of Energy
   [DE-AC02-05CH11231]
FX We are grateful to Symyx Technologies, now Freeslate Inc., for the
   design and construction of the high-throughput reactor used in this
   work. J.S.O. thanks William Buhro, Dmitri Talapin, Michael Clark, and
   Sanat Kumar for helpful discussions. E.M.C. thanks Delia Milliron for
   helpful discussions. J.S.O. acknowledges the donors of the American
   Chemical Society Petroleum Research Fund for their partial support of
   this research. High-throughput kinetics measurements were performed by
   J.S.O. and E.M.C. at the Molecular Foundry, supported by the Office of
   Science, Office of Basic Energy Sciences of the U.S. Department of
   Energy, under Contract No. DE-AC02-78105CH11231. All other kinetics
   studies were performed by J.S.O. and H.L. and funded by the Physical
   Chemistry of Semiconductor Nanocrystals Program, supported by the
   Director, Office of Science, Office of Basic Energy Sciences, Materials
   Sciences and Engineering Division of the U.S. Department of Energy,
   under Contract No. DE-AC02-05CH11231.
NR 62
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U1 11
U2 112
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 29
PY 2010
VL 132
IS 51
BP 18206
EP 18213
DI 10.1021/ja106777j
PG 8
WC Chemistry, Multidisciplinary
SC Chemistry
GA 701LF
UT WOS:000285818700039
PM 21128655
ER

PT J
AU Kang, J
   Wei, SH
   Kim, YH
AF Kang, Joongoo
   Wei, Su-Huai
   Kim, Yong-Hyun
TI Origin of the Diverse Melting Behaviors of Intermediate-Size
   Nanoclusters: Theoretical Study of Al-N (N=51-58, 64)
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID AUGMENTED-WAVE METHOD; GLOBAL OPTIMIZATION; ATOMIC CLUSTERS; FINITE
   SYSTEMS; METAL-CLUSTERS; ARGON CLUSTERS; COEXISTENCE; NANOPARTICLES;
   REACTIVITY
AB Microscopic understanding of thermal behaviors of metal nanoparticles is important for nanoscale catalysis and thermal energy storage applications. However, it is a challenge to obtain a structural interpretation at the atomic level from measured thermodynamic quantities such as heat capacity. Using first-principles molecular dynamics simulations, we reproduce the size-sensitive heat capacities of Al-N clusters with N around 55, which exhibit several distinctive shapes associated with diverse melting behaviors of the clusters. We reveal a clear correlation of the diverse melting behaviors with cluster core symmetries. For the Al-N clusters with N = 51-58 and 64, we identify several competing structures with widely different degree of symmetry. The conceptual link between the degree of symmetry (e.g., T-d, D-2d, and C-s) and solidity of atomic clusters is quantitatively demonstrated through the analysis of the configuration entropy. The size-dependent, diverse melting behaviors of Al clusters originate from the reduced symmetry (T-d -> D-2d -> C-s) with increasing the cluster size. In particular, the sudden drop of the melting temperature and appearance of the dip at N = 56 are due to the T-d-to-D-2d symmetry change, triggered by the surface saturation of the tetrahedral Al-55 with the T-d symmetry.
C1 [Kang, Joongoo; Wei, Su-Huai] Natl Renewable Energy Lab, Golden, CO 80401 USA.
   [Kim, Yong-Hyun] Korea Adv Inst Sci & Technol, Grad Sch Nanosci & Technol WCU, Taejon 305701, South Korea.
RP Kang, J (reprint author), Natl Renewable Energy Lab, Golden, CO 80401 USA.
EM Joongoo.Kang@nrel.gov; Yong.Hyun.Kim@kaist.ac.kr
RI Kim, Yong-Hyun/C-2045-2011
OI Kim, Yong-Hyun/0000-0003-4255-2068
FU U.S. DOE [DE-AC36-08GO28308]; Office of Science of the U.S. Department
   of Energy [DE-AC02-05CH11231]; Office of Energy Efficiency and Renewable
   Energy of the U.S. Department of Energy [DE-AC36-08GO28308]; Ministry of
   Education, Science and Technology [R31-2008-000-10071-0]
FX This work was funded by the U.S. DOE EERE CSP and NREL LDRD programs
   under Contract No. DE-AC36-08GO28308. This research used resources of
   the National Energy Research Scientific Computing Center, which is
   supported by the Office of Science of the U.S. Department of Energy
   under Contract No. DE-AC02-05CH11231. This research also used
   capabilities of the National Renewable Energy Laboratory Computational
   Sciences Center, which is supported by the Office of Energy Efficiency
   and Renewable Energy of the U.S. Department of Energy under Contact No.
   DE-AC36-08GO28308. Y.-H. Kim was also supported by WCU (World Class
   University) program through the National Research Foundation of Korea
   funded by the Ministry of Education, Science and Technology
   (R31-2008-000-10071-0). We thank A. K. Starace for discussions and for
   reading the manuscript.
NR 35
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U1 1
U2 15
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 29
PY 2010
VL 132
IS 51
BP 18287
EP 18291
DI 10.1021/ja107683m
PG 5
WC Chemistry, Multidisciplinary
SC Chemistry
GA 701LF
UT WOS:000285818700048
PM 21141857
ER

PT J
AU Yazyev, OV
   Moore, JE
   Louie, SG
AF Yazyev, Oleg V.
   Moore, Joel E.
   Louie, Steven G.
TI Spin Polarization and Transport of Surface States in the Topological
   Insulators Bi2Se3 and Bi2Te3 from First Principles
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID SELF-CONSISTENT THEORY; SINGLE DIRAC CONE; DIELECTRIC RESPONSE;
   ELECTRONIC STATES; ORBIT INTERACTION; SEMICONDUCTORS; NANORIBBONS;
   MAGNETISM; GRAPHENE; LIMIT
AB We investigate the band dispersion and the spin texture of topologically protected surface states in the bulk topological insulators Bi2Se3 and Bi2Te3 by first-principles methods. Strong spin-orbit entanglement in these materials reduces the spin polarization of the surface states to similar to 50% in both cases; this reduction is absent in simple models but of important implications to essentially any spintronic application. We propose a way of controlling the magnitude of spin polarization associated with a charge current in thin films of topological insulators by means of an external electric field. The proposed dual-gate device configuration provides new possibilities for electrical control of spin.
C1 [Yazyev, Oleg V.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
RP Yazyev, OV (reprint author), Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
RI Yazyev, Oleg/A-4073-2008; li, yuan/B-4627-2011; Moore, Joel/O-4959-2016
OI Yazyev, Oleg/0000-0001-7281-3199; Moore, Joel/0000-0002-4294-5761
FU NSF [DMR07-05941, DMR08-04413]; Office of Science, Office of Basic
   Energy Sciences, Division of Materials Sciences and Engineering
   Division, U.S. Department of Energy [DE-AC02-05CH11231]; Swiss NSF
   [PBELP2-123086]
FX We would like to thank E. Kioupakis, J. Orenstein, and C. Jozwiak for
   discussions. This work was supported by NSF Grants No. DMR07-05941 (S.
   G. L.) and No. DMR08-04413 (J. E. M.) and by the Director, Office of
   Science, Office of Basic Energy Sciences, Division of Materials Sciences
   and Engineering Division, U.S. Department of Energy under Contract No.
   DE-AC02-05CH11231 (O. V. Y.). O. V. Y. received partial support from the
   Swiss NSF (Grant No. PBELP2-123086). Computational resources have been
   provided by TeraGrid.
NR 43
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Z9 255
U1 18
U2 148
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 29
PY 2010
VL 105
IS 26
AR 266806
DI 10.1103/PhysRevLett.105.266806
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713VT
UT WOS:000286766200008
PM 21231702
ER

PT J
AU Kim, SH
   Yeon, J
   Sefat, AS
   Mandrus, DG
   Halasyamani, PS
AF Kim, Sang-Hwan
   Yeon, Jeongho
   Sefat, Athena S.
   Mandrus, David G.
   Halasyamani, P. Shiv
TI Stereo-Active Lone-Pair Control on the Ferromagnetic Behavior in
   VO(SeO2OH)(2): A New Acentric Ferromagnetic Material
SO CHEMISTRY OF MATERIALS
LA English
DT Article
ID SPIN-EXCHANGE INTERACTIONS; BOND-VALENCE PARAMETERS; CRYSTAL-STRUCTURE;
   MAGNETIC-PROPERTIES; DIMER; STEREOCHEMISTRY; SEMICONDUCTORS; INSULATORS;
   DISTORTION; VOSE2O5
AB A new acentric ferromagnetic material, VO(SeO2OH)(2), has been synthesized and characterized by single crystal X-ray diffraction, second harmonic generation (SHG), and magnetization measurements. The crystal structure of VO(SeO2OH)(2) consists of linear chains of corner-shared V4+O6 octahedra that are connected by SeO2OH groups. The material exhibits a weak SHG efficiency, comparable to alpha-SiO2, and a ferromagnetic transition (T-C) at similar to 2.5 K with a saturated magnetic moment of l.09.0 mu(B) per formula unit (mu(B)/FU). The origin of the ferromagnetism is explained by the suppression of the antiferromagnetic superexchange (SE) and supersuper-exchange (SSE) interactions in the intro-chain and inter-chain magnetic interactions, respectively. In addition, using first principles density functional theory (DFT) calculations, we show that the SSE interactions depend on the O(2)-Se4+-O(3) angle. As we demonstrate, the stereoactive lone-pair on See(4+) is the driving force for the inter-chain ferromagnetic interactions.
C1 [Kim, Sang-Hwan; Yeon, Jeongho; Halasyamani, P. Shiv] Univ Houston, Dept Chem, Houston, TX 77204 USA.
   [Sefat, Athena S.] Oak Ridge Natl Lab, Mat Sci & Technol Div, Oak Ridge, TN 37831 USA.
   [Mandrus, David G.] Univ Tennessee, Dept Mat Sci & Engn, Knoxville, TN 37996 USA.
RP Halasyamani, PS (reprint author), Univ Houston, Dept Chem, 136 Fleming Bldg, Houston, TX 77204 USA.
EM psh@uh.edu
RI Halasyamani, P. Shiv/A-8620-2009; Mandrus, David/H-3090-2014;
   Halasyamani, Shiv/J-3438-2014; Sefat, Athena/R-5457-2016
OI Halasyamani, Shiv/0000-0003-1787-1040; Sefat, Athena/0000-0002-5596-3504
FU Robert A. Welch Foundation [E-1457]; ACS [PRF 47345-AC10]; NSF
   [DMR-0652150]; Division of Materials Sciences and Engineering, Office of
   Basic Energy Sciences, U.S. Department of Energy
FX We thank the Robert A. Welch Foundation (Grant E-1457), the ACS PRF
   47345-AC10, and the NSF (DMR-0652150) for support. Research is partly
   sponsored by the Division of Materials Sciences and Engineering, Office
   of Basic Energy Sciences, U.S. Department of Energy.
NR 52
TC 8
Z9 8
U1 0
U2 5
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0897-4756
EI 1520-5002
J9 CHEM MATER
JI Chem. Mat.
PD DEC 28
PY 2010
VL 22
IS 24
BP 6665
EP 6672
DI 10.1021/cm102659w
PG 8
WC Chemistry, Physical; Materials Science, Multidisciplinary
SC Chemistry; Materials Science
GA 696GD
UT WOS:000285429000019
ER

PT J
AU Leventis, N
   Sotiriou-Leventis, C
   Chandrasekaran, N
   Mulik, S
   Larimore, ZJ
   Lu, HB
   Churu, G
   Mang, JT
AF Leventis, Nicholas
   Sotiriou-Leventis, Chariklia
   Chandrasekaran, Naveen
   Mulik, Sudhir
   Larimore, Zachary J.
   Lu, Hongbing
   Churu, Gitogo
   Mang, Joseph T.
TI Multifunctional Polyurea Aerogels from Isocyanates and Water. A
   Structure-Property Case Study
SO CHEMISTRY OF MATERIALS
LA English
DT Article
ID SMALL-ANGLE SCATTERING; DYNAMIC COMPRESSIVE RESPONSE; MECHANICALLY
   STRONG AEROGELS; CORE-SHELL SUPERSTRUCTURES; OPEN-PORE POLYURETHANE;
   ORGANIC AEROGELS; FORMALDEHYDE AEROGELS; NEUTRON-SCATTERING; SILICA
   AEROGELS; CARBON
AB It is well-known that isocyanates and water yield polyureas; however, that reaction is not generally associated with the synthesis of the latter, being used instead for environmental curing of films baring free NCO groups or for foaming polyurethanes. Here we report that careful control of the relative isocyanate/water/catalyst (Et3N) ratio in acetone, acetonitrile, or DMSO prevents precipitation, yielding instead polyurea (PUA) gels convertible to highly porous (up to 98.6% v/v) aerogels over a very wide density range (0.016-0.55 g cm(-3)). The method has been implemented successfully with several aliphatic and aromatic di and triisocyanates. PUA aerogels have been studied at the molecular level (C-13 NM R, IR, XRD), the elementary nanoparticle level (SANS/USANS), and the microscopic level (SEM). Their porous structure has been probed with N-2-sorption porosimetry. Despite that the nanomorphology varies with density from fibrous at the low density end to particulate at the high density end, all samples consist of similarly sized primary particles assembled differently, probably via a reaction-limited cluster cluster aggregation mechanism at the low density end, which changes into diffusion-limited aggregation as the isocyanate concentration increases. Higher density PUA aerogels (>0.3 g cm(-3)) are mechanically strong enough to tolerate the capillary forces of evaporating low surface tension solvents (e.g., pentane) and can be dried under ambient pressure; under compression, they can absorb energy (up to 90 J g(-1) at 0.55 g cm(-3)) at levels observed only with polyurea-cross-linked silica and vanadia aerogels (50-190 J g(-1) at similar densities). At cryogenic temperatures (-173 degrees C) PUA aerogels remain relatively ductile, a fact attributed to sintering effects and their entangled fibrous nanomorphology. Upon pyrolysis (>500 degrees C, Ar), PUA aerogels from aromatic isocyanates are converted to carbon aerogels in high yields (similar to 60% w/w). Those properties, considered together with the simple synthetic protocol, render PUA aerogels attractive multifunctional materials.
C1 [Leventis, Nicholas; Sotiriou-Leventis, Chariklia; Chandrasekaran, Naveen; Mulik, Sudhir] Missouri Univ Sci & Technol, Dept Chem, Rolla, MO 65409 USA.
   [Larimore, Zachary J.] Missouri Univ Sci & Technol, Dept Mech Engn, Rolla, MO 65409 USA.
   [Lu, Hongbing; Churu, Gitogo] Univ Texas Dallas, Dept Mech Engn, Richardson, TX 75080 USA.
   [Mang, Joseph T.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Leventis, N (reprint author), Missouri Univ Sci & Technol, Dept Chem, Rolla, MO 65409 USA.
RI Lu, Hongbing/A-1312-2011
FU National Science Foundation [CHE-0809562, DMR-0907291, CMMI-0653970,
   CMMI-0653919, DMR-0454672]; Army Research Office [W911NF-10-1-0476]; DOE
   office of Basic Energy Sciences; National Institute of Standards and
   Technology, U.S. Department of Commerce
FX For financial support we thank the National Science Foundation under
   Agreement Nos. CHE-0809562 (N.L., C.S.-L.), DMR-0907291 (N.L., H.L.),
   CMMI-0653970 (N.L., C.S.-L.), and CMMI-0653919 (H.L.) and the Army
   Research Office under Award No. W911NF-10-1-0476 (N.L., C.S.-L.). We
   also acknowledge the Materials Research Center of Missouri S&T for
   support in sample characterization (SEM, XRD). Solids NMR work was
   conducted at the University of Missouri Columbia by Dr. Wei Wycoff. This
   work benefited tremendously from the use of the SANS instrument, LQD at
   the Manuel Lujan, Jr. Neutron Scattering Center of the Los Alamos
   National Laboratory, supported by the DOE office of Basic Energy
   Sciences and utilized facilities supported in part by the National
   Science Foundation under Agreement No. DMR-0454672. We also acknowledge
   the support of the National Institute of Standards and Technology, U.S.
   Department of Commerce, in providing additional neutron research
   facilities used in this work. Finally, we thank Bayer Corporation USA
   for their generous supply of isocyanates.
NR 70
TC 53
Z9 54
U1 6
U2 101
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0897-4756
J9 CHEM MATER
JI Chem. Mat.
PD DEC 28
PY 2010
VL 22
IS 24
BP 6692
EP 6710
DI 10.1021/cm102891d
PG 19
WC Chemistry, Physical; Materials Science, Multidisciplinary
SC Chemistry; Materials Science
GA 696GD
UT WOS:000285429000022
ER

PT J
AU Wang, QF
   Keffer, DJ
   Nicholson, DM
   Thomas, JB
AF Wang, Qifei
   Keffer, David J.
   Nicholson, Donald M.
   Thomas, J. Brock
TI Coarse-Grained Molecular Dynamics Simulation of Polyethylene
   Terephthalate (PET)
SO MACROMOLECULES
LA English
DT Article
ID AMORPHOUS POLY(ETHYLENE-TEREPHTHALATE); POLYMER MELTS; POLY(ETHYLENE
   ISOPHTHALATE); POLYSTYRENE; EQUATION; BEHAVIOR; CHAINS; ENTANGLEMENT;
   RELAXATION; DIMENSIONS
AB A coarse grained (CG) model of poly(ethylene terephthalate) (PET) was developed and implemented in CG molecular dynamics (MD) simulations of PET chains with degree of polymerization up to 50 The CG potential is parametrized to structural distribution functions obtained from atomistic simulations [J Phys Chem B 2010, 114, 786] using an inversion procedure based on the Ornstein-Zernike equation with the Percus-Yevick approximation (OZPY) [ Phys Rev E2010, 81,061204] The CGMD simulation of PET chains satisfactorily reproduces the structural and dynamic properties from atomistic MD simulation of the same systems We report the average chain end-to end distance and radius of gyration, relaxation time, self diffusivity, and zero shear-rate viscosity s dependence on degree of polymerization For the longest chains, we find the scaling exponents of 0 51 0 50, and -2 00 for average chain end-to end distance, radius of gyration and self-diffusivity, respectively The exponents are very close to the theoretical values of entangled polymer melt systems (0 50, 0 50 and -2 0) The study of entanglement in the longer chains shows that the tube diameter, number of monomers between entanglement points and interentanglement strand length are in close agreement with the reported values for an entangled PET melt
C1 [Wang, Qifei; Keffer, David J.] Univ Tennessee, Dept Chem & Biomol Engn, Knoxville, TN 37996 USA.
   [Nicholson, Donald M.] Oak Ridge Natl Lab, Comp Sci & Math Div, Oak Ridge, TN 37830 USA.
   [Thomas, J. Brock] Eastman Chem Co, Kingsport, TN 37662 USA.
RP Keffer, DJ (reprint author), Univ Tennessee, Dept Chem & Biomol Engn, Knoxville, TN 37996 USA.
RI Keffer, David/C-5133-2014
OI Keffer, David/0000-0002-6246-0286
FU Eastman Chemical Company; National Science Foundation [DGE 0801470, OCI
   07-11134 5]; U S Department of Energy, Office of Basic Energy Sciences,
   Division of Materials Sciences and Engineering
FX This research was supported by the Eastman Chemical Company and by a
   grant from the National Science Foundation (DGE 0801470) and by the U S
   Department of Energy, Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering This research project used resources
   of the National Institute for Computational Sciences (NICS) supported by
   NSF under agreement number OCI 07-11134 5
NR 68
TC 19
Z9 19
U1 4
U2 41
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0024-9297
EI 1520-5835
J9 MACROMOLECULES
JI Macromolecules
PD DEC 28
PY 2010
VL 43
IS 24
BP 10722
EP 10734
DI 10.1021/ma102084a
PG 13
WC Polymer Science
SC Polymer Science
GA 696GH
UT WOS:000285429400071
ER

PT J
AU Bai, Y
   Nelson, AE
AF Bai, Yang
   Nelson, Ann E.
TI CP violating contribution to Delta Gamma in the B-s system from mixing
   with a hidden pseudoscalar
SO PHYSICAL REVIEW D
LA English
DT Article
AB Recent evidence for a CP violating asymmetry in the semileptonic decays of B-s mesons cannot be accommodated within the standard model. Such an asymmetry can be explained by new physics contributions to Delta B 2 components of either the mass matrix or the decay matrix. We show that mixing with a hidden pseudoscalar meson with a mass around 5 GeV can result in a new CP violating contribution to the mixing and can resolve several anomalies in this system including the width difference, the average width and the charge asymmetry. We also discuss the effects of the hidden meson on other b physics observables, and present viable decay modes for the hidden meson. We make predictions for new decay channels of B hadrons, which can be tested at the Tevatron, the LHC and B-factories.
C1 [Bai, Yang] Fermilab Natl Accelerator Lab, Dept Theoret Phys, Batavia, IL 60510 USA.
   [Nelson, Ann E.] Univ Washington, Dept Phys, Seattle, WA 98195 USA.
RP Bai, Y (reprint author), Fermilab Natl Accelerator Lab, Dept Theoret Phys, Batavia, IL 60510 USA.
FU DOE [DE-FGO3-96-ER40956]; United States Department of Energy
   [DE-AC02-07CH11359]
FX We would like to thank Bogdan Dobrescu, Patrick Fox, Elvira Gamiz, Yuval
   Grossman, Roni Harnik, Alex Kagan, Adam Martin, Michele Papucci and
   Andrew Wagner for useful discussions. We also thank the Aspen Center of
   Physics where part of this work was finished. This work (A. N.) was
   partially supported by the DOE under Contract No. DE-FGO3-96-ER40956.
   Fermilab is operated by Fermi Research Alliance, LLC, under Contract No.
   DE-AC02-07CH11359 with the United States Department of Energy.
NR 33
TC 22
Z9 22
U1 0
U2 2
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 28
PY 2010
VL 82
IS 11
AR 114027
DI 10.1103/PhysRevD.82.114027
PG 10
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711HM
UT WOS:000286577700002
ER

PT J
AU Davoudiasl, H
   McElmurry, T
   Soni, A
AF Davoudiasl, Hooman
   McElmurry, Thomas
   Soni, Amarjit
TI Promising diphoton signals of the little radion at hadron colliders
SO PHYSICAL REVIEW D
LA English
DT Article
ID RANDALL-SUNDRUM MODEL; PHOTON PAIR PRODUCTION; BULK FIELDS; MODULUS;
   SECTOR
AB In little Randall-Sundrum models, the bulk couplings of the radion to massless gauge fields can yield a greatly enhanced diphoton signal at hadron colliders. We examine the implications of the Tevatron data for the little radion and also show that the 7 TeV run at the Large Hadron Collider will have an impressive reach in this channel. The diphoton signal is crucial in the search for a light radion, or the dual dilaton, and can potentially probe the ultraviolet scale of the theory.
C1 [Davoudiasl, Hooman; McElmurry, Thomas; Soni, Amarjit] Brookhaven Natl Lab, Dept Phys, Upton, NY 11973 USA.
RP Davoudiasl, H (reprint author), Brookhaven Natl Lab, Dept Phys, Upton, NY 11973 USA.
FU U.S. DOE [DE-AC02-98CH10886]
FX We thank Y. Bai for conversations on dilaton couplings, S. Dawson, J.
   Hubisz, and M. Toharia for discussions, and J.-P. Guillet for assistance
   with DIPHOX. This work is supported in part by the U.S. DOE Grant No.
   DE-AC02-98CH10886.
NR 43
TC 21
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U1 0
U2 2
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 28
PY 2010
VL 82
IS 11
AR 115028
DI 10.1103/PhysRevD.82.115028
PG 5
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711HM
UT WOS:000286577700004
ER

PT J
AU Kondo, T
   Khasanov, R
   Karpinski, J
   Kazakov, SM
   Zhigadlo, ND
   Bukowski, Z
   Shi, M
   Bendounan, A
   Sassa, Y
   Chang, J
   Pailhes, S
   Mesot, J
   Schmalian, J
   Keller, H
   Kaminski, A
AF Kondo, Takeshi
   Khasanov, R.
   Karpinski, J.
   Kazakov, S. M.
   Zhigadlo, N. D.
   Bukowski, Z.
   Shi, M.
   Bendounan, A.
   Sassa, Y.
   Chang, J.
   Pailhes, S.
   Mesot, J.
   Schmalian, J.
   Keller, H.
   Kaminski, A.
TI Anomalies in the Fermi Surface and Band Dispersion of
   Quasi-One-Dimensional CuO Chains in the High-Temperature Superconductor
   YBa2Cu4O8
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID COPPER-OXIDE SUPERCONDUCTORS; MAGNETIC EXCITATIONS; T-C; CROSSOVER;
   BI2SR2CACU2O8+DELTA; LUTTINGER; PRESSURE; LIQUIDS
AB We have investigated the electronic states in quasi-one-dimensional CuO chains by microprobe angle resolved photoemission spectroscopy. We find that the quasiparticle Fermi surface consists of six disconnected segments, consistent with recent theoretical calculations that predict the formation of narrow, elongated Fermi surface pockets for coupled CuO chains. In addition, we find a strong renormalization effect with a significant kink structure in the band dispersion. The properties of this latter effect [energy scale (similar to 40 meV), temperature dependence, and behavior with Zn-doping] are identical to those of the bosonic mode observed in CuO2 planes of high-temperature superconductors, indicating they have a common origin.
C1 [Kondo, Takeshi; Schmalian, J.; Kaminski, A.] Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
   [Kondo, Takeshi; Schmalian, J.; Kaminski, A.] Iowa State Univ, Dept Phys & Astron, Ames, IA 50011 USA.
   [Khasanov, R.] Paul Scherrer Inst, Lab Muon Spin Spect, CH-5232 Villigen, Switzerland.
   [Karpinski, J.; Kazakov, S. M.; Zhigadlo, N. D.; Bukowski, Z.] ETH, Solid State Phys Lab, CH-8093 Zurich, Switzerland.
   [Shi, M.] Paul Scherrer Inst, Swiss Light Source, CH-5232 Villigen, Switzerland.
   [Bendounan, A.; Sassa, Y.; Chang, J.; Pailhes, S.; Mesot, J.] Swiss Fed Inst Technol, Neutron Scattering Lab, CH-5232 Villigen, Switzerland.
   [Keller, H.] Univ Zurich, Inst Phys, CH-8057 Zurich, Switzerland.
RP Kondo, T (reprint author), Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
RI Schmalian, Joerg/H-2313-2011; Kazakov, Sergey/A-4139-2014; Chang,
   Johan/F-1506-2014; Kondo, Takeshi/H-2680-2016; Sassa,
   Yasmine/F-3362-2017
OI Kazakov, Sergey/0000-0002-0553-7881; Chang, Johan/0000-0002-4655-1516; 
FU Director's Office for Basic Energy Sciences, US DOE; Swiss NCCR MaNEP;
   Iowa State University [W-7405-ENG-82]; NSF [DMR 9212658]; Swiss National
   Science Foundation; K. Alex Muller Foundation
FX We thank C. Berthod and T. Giamarchi for discussions and Fig. 1(e). This
   work was supported by the Director's Office for Basic Energy Sciences,
   US DOE and the Swiss NCCR MaNEP. The Ames Laboratory is operated for the
   US DOE by Iowa State University under Contract No. W-7405-ENG-82. The
   Synchrotron Radiation Center is supported by NSF DMR 9212658. R. K.
   gratefully acknowledges the support of the Swiss National Science
   Foundation and the K. Alex Muller Foundation.
NR 32
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U1 2
U2 23
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 28
PY 2010
VL 105
IS 26
AR 267003
DI 10.1103/PhysRevLett.105.267003
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713VJ
UT WOS:000286765200009
PM 21231707
ER

PT J
AU Steffen, JH
   Upadhye, A
   Baumbaugh, A
   Chou, AS
   Mazur, PO
   Tomlin, R
   Weltman, A
   Wester, W
AF Steffen, J. H.
   Upadhye, A.
   Baumbaugh, A.
   Chou, A. S.
   Mazur, P. O.
   Tomlin, R.
   Weltman, A.
   Wester, W.
TI Laboratory Constraints on Chameleon Dark Energy and Power-Law Fields
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
AB We report results from a search for chameleon particles created via photon-chameleon oscillations within a magnetic field. This experiment is sensitive to a wide class of unexplored chameleon power-law and dark energy models. These results exclude 5 orders of magnitude in the coupling of chameleons to photons covering a range of 4 orders of magnitude in chameleon effective mass and, for individual models, exclude between 4 and 12 orders of magnitude in chameleon couplings to matter.
C1 [Steffen, J. H.; Baumbaugh, A.; Chou, A. S.; Mazur, P. O.; Tomlin, R.; Wester, W.] Fermilab Natl Accelerator Lab, Batavia, IL 60510 USA.
   [Upadhye, A.] Univ Chicago, Kavli Inst Cosmol Phys, Chicago, IL 60637 USA.
   [Weltman, A.] Univ Cape Town, Astrophys Cosmol & Grav Ctr, ZA-7700 Rondebosch, South Africa.
RP Steffen, JH (reprint author), Fermilab Natl Accelerator Lab, POB 500, Batavia, IL 60510 USA.
FU U.S. Department of Energy [DE-AC02-07CH11359]; Kavli Institute for
   Cosmological Physics (NSF) [PHY-0114422]
FX We thank the staff at Fermilab in the Technical Division Test and
   Instrumentation Department, the Particle Physics Division mechanical
   design and electrical engineering groups, the Accelerator Division
   vacuum experts, the U.S. Department of Energy (Contract No.
   DE-AC02-07CH11359) and the Kavli Institute for Cosmological Physics (NSF
   Contract PHY-0114422).
NR 20
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U1 1
U2 1
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 28
PY 2010
VL 105
IS 26
AR 261803
DI 10.1103/PhysRevLett.105.261803
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713VJ
UT WOS:000286765200004
PM 21231645
ER

PT J
AU Gao, HC
   Wang, XH
   Yang, ZMK
   Chen, JR
   Liang, YL
   Chen, HJ
   Palzkill, T
   Zhou, JZ
AF Gao, Haichun
   Wang, Xiaohu
   Yang, Zamin K.
   Chen, Jingrong
   Liang, Yili
   Chen, Haijiang
   Palzkill, Timothy
   Zhou, Jizhong
TI Physiological Roles of ArcA, Crp, and EtrA and Their Interactive Control
   on Aerobic and Anaerobic Respiration in Shewanella oneidensis
SO PLOS ONE
LA English
DT Article
ID GLOBAL TRANSCRIPTOME ANALYSIS; ESCHERICHIA-COLI; PUTREFACIENS MR-1;
   REGULATORY NETWORKS; PROTEIN-PHOSPHORYLATION; ELECTRON-TRANSPORT; CARBON
   METABOLISM; RECEPTOR PROTEIN; GENE-EXPRESSION; SHOCK RESPONSE
AB In the genome of Shewanella oneidensis, genes encoding the global regulators ArcA, Crp, and EtrA have been identified. All these proteins deviate from their counterparts in E. coli significantly in terms of functionality and regulon. It is worth investigating the involvement and relationship of these global regulators in aerobic and anaerobic respiration in S. oneidensis. In this study, the impact of the transcriptional factors ArcA, Crp, and EtrA on aerobic and anaerobic respiration in S. oneidensis were assessed. While all these proteins appeared to be functional in vivo, the importance of individual proteins in these two major biological processes differed. The ArcA transcriptional factor was critical in aerobic respiration while the Crp protein was indispensible in anaerobic respiration. Using a newly developed reporter system, it was found that expression of arcA and etrA was not influenced by growth conditions but transcription of crp was induced by removal of oxygen. An analysis of the impact of each protein on transcription of the others revealed that Crp expression was independent of the other factors whereas ArcA repressed both etrA and its own transcription while EtrA also repressed arcA transcription. Transcriptional levels of arcA in the wild type, crp, and etrA strains under either aerobic or anaerobic conditions were further validated by quantitative immunoblotting with a polyclonal antibody against ArcA. This extensive survey demonstrated that all these three global regulators are functional in S. oneidensis. In addition, the reporter system constructed in this study will facilitate in vivo transcriptional analysis of targeted promoters.
C1 [Gao, Haichun; Chen, Haijiang] Zhejiang Univ, Inst Microbiol, Hangzhou 310003, Zhejiang, Peoples R China.
   [Gao, Haichun; Chen, Haijiang] Zhejiang Univ, Coll Life Sci, Hangzhou 310003, Zhejiang, Peoples R China.
   [Gao, Haichun; Chen, Jingrong; Liang, Yili; Zhou, Jizhong] Univ Oklahoma, Dept Bot & Microbiol, Norman, OK 73019 USA.
   [Gao, Haichun; Chen, Jingrong; Liang, Yili; Zhou, Jizhong] Univ Oklahoma, Inst Environm Genom, Norman, OK 73019 USA.
   [Wang, Xiaohu; Palzkill, Timothy] Baylor Coll Med, Dept Pharmacol, Houston, TX 77030 USA.
   [Wang, Xiaohu; Palzkill, Timothy] Baylor Coll Med, Dept Mol Virol & Microbiol, Houston, TX 77030 USA.
   [Yang, Zamin K.] Oak Ridge Natl Lab, Div Environm Sci, Oak Ridge, TN 37831 USA.
RP Gao, HC (reprint author), Zhejiang Univ, Inst Microbiol, Hangzhou 310003, Zhejiang, Peoples R China.
EM haichung@zju.edu.cn; jzhou@rccc.ou.edu
RI Gao, Haichun/A-2160-2014; Chen, Haijiang/D-1893-2009
FU Major State Basic Research Development Program (973 Program)
   [2010CB833803]; National Natural Science Foundation of China [30870032];
   U.S. Department of Energy through Shewanella Federation, Office of
   Biological and Environmental Research, Office of Science
FX This research was supported by Major State Basic Research Development
   Program (973 Program: 2010CB833803) and National Natural Science
   Foundation of China (30870032) to HG. This research was also supported
   by The U.S. Department of Energy under the Genomics: GTL Program through
   Shewanella Federation, Office of Biological and Environmental Research,
   Office of Science. The funders had no role in study design, data
   collection and analysis, decision to publish, or preparation of the
   manuscript.
NR 49
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U1 2
U2 22
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 185 BERRY ST, STE 1300, SAN FRANCISCO, CA 94107 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 28
PY 2010
VL 5
IS 12
AR e15295
DI 10.1371/journal.pone.0015295
PG 11
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 701CS
UT WOS:000285792500028
PM 21203399
ER

PT J
AU Liu, LV
   Bell, CB
   Wong, SD
   Wilson, SA
   Kwak, Y
   Chow, MS
   Zhao, JY
   Hodgson, KO
   Hedman, B
   Solomon, EI
AF Liu, Lei V.
   Bell, Caleb B., III
   Wong, Shaun D.
   Wilson, Samuel A.
   Kwak, Yeonju
   Chow, Marina S.
   Zhao, Jiyong
   Hodgson, Keith O.
   Hedman, Britt
   Solomon, Edward I.
TI Definition of the intermediates and mechanism of the anticancer drug
   bleomycin using nuclear resonance vibrational spectroscopy and related
   methods
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
   AMERICA
LA English
DT Article
DE nonheme iron; structure/reactivity
ID ACTIVATED BLEOMYCIN; NONHEME IRON; ELECTRONIC-STRUCTURE;
   CRYSTAL-STRUCTURE; FERRIC BLEOMYCIN; CESIUM ALUMS; Q-BAND; DNA; COMPLEX;
   OXYGEN
AB Bleomycin (BLM) is a glycopeptide anticancer drug capable of effecting single- and double-strand DNA cleavage. The last detectable intermediate prior to DNA cleavage is a low spin Fe-III peroxy level species, termed activated bleomycin (ABLM). DNA strand scission is initiated through the abstraction of the C-4' hydrogen atom of the deoxyribose sugar unit. Nuclear resonance vibrational spectroscopy (NRVS) aided by extended X-ray absorption fine structure spectroscopy and density functional theory (DFT) calculations are applied to define the natures of (FeBLM)-B-III and ABLM as (BLM)Fe-III-OH and (BLM)Fe-III-(eta(1)-OOH) species, respectively. The NRVS spectra of (FeBLM)-B-III and ABLM are strikingly different because in ABLM the delta Fe-O-O bending mode mixes with, and energetically splits, the doubly degenerate, intense O-Fe-N-ax transaxial bends. DFT calculations of the reaction of ABLM with DNA, based on the species defined by the NRVS data, show that the direct H-atom abstraction by ABLM is thermodynamically favored over other proposed reaction pathways.
C1 [Liu, Lei V.; Bell, Caleb B., III; Wong, Shaun D.; Wilson, Samuel A.; Kwak, Yeonju; Chow, Marina S.; Hodgson, Keith O.; Solomon, Edward I.] Stanford Univ, Dept Chem, Stanford, CA 94305 USA.
   [Zhao, Jiyong] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
   [Hodgson, Keith O.; Hedman, Britt; Solomon, Edward I.] Stanford Univ, SLAC Natl Accelerator Lab, Stanford Synchrotron Radiat Lightsource, Menlo Pk, CA 94025 USA.
RP Solomon, EI (reprint author), Stanford Univ, Dept Chem, Stanford, CA 94305 USA.
EM edward.solomon@stanford.edu
RI Liu, Lei/H-4942-2011
FU National Institutes of Health (NIH) [GM 40392, RR-001209]; National
   Science Foundation [MCB 0919027]; Department of Energy (Office of Basic
   Energy Science); NIH; National Center for Research Resources; Department
   of Energy (DOE), Office of Biological and Environmental Research; DOE,
   Office of Science, Office of Basic Energy Sciences [DE-AC02-06CH11357];
   DOE, Office of Basic Energy Sciences [DE-AC02-76SF00515]; Environmental
   Protection Agency [SU833912]; Larry Yung Stanford Graduate Fellowship
FX Financial support was provided by the National Institutes of Health
   (NIH) (Grants GM 40392 to E. I. S., and RR-001209 to K.O.H.) and
   National Science Foundation (Grant MCB 0919027 to E. I. S.). SSRL
   operations are funded by the Department of Energy (Office of Basic
   Energy Science). The Structural Molecular Biology program at SSRL is
   funded by the NIH, National Center for Research Resources, Biomedical
   Technology Program and the Department of Energy (DOE), Office of
   Biological and Environmental Research. Use of the Advanced Photon Source
   at Argonne National Laboratory was supported by the DOE, Office of
   Science, Office of Basic Energy Sciences, under Contract
   DE-AC02-06CH11357. This work was made possible [in part] by the
   computational resources of the Stanford Institute for Materials and
   Energy Science supported by the DOE, Office of Basic Energy Sciences
   under contract DE-AC02-76SF00515. Travel funds were provided by
   Environmental Protection Agency (Grant SU833912). L. V. L. is supported
   by a Larry Yung Stanford Graduate Fellowship.
NR 43
TC 28
Z9 28
U1 1
U2 15
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 28
PY 2010
VL 107
IS 52
BP 22419
EP 22424
DI 10.1073/pnas.1016323107
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 699SX
UT WOS:000285684200017
PM 21149675
ER

PT J
AU Hu, YY
   Rawal, A
   Schmidt-Rohr, K
AF Hu, Y. -Y.
   Rawal, A.
   Schmidt-Rohr, K.
TI Strongly bound citrate stabilizes the apatite nanocrystals in bone
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
   AMERICA
LA English
DT Article
DE nanocrystal stabilization; nanocomposite; organic-inorganic interface;
   bone composition; solid-state NMR
ID SOLID-STATE NMR; CITRIC-ACID; MINERAL INTERFACE; CALCIUM-CARBONATE;
   HYDROXYAPATITE; SPECTROSCOPY; PRECIPITATION; BIOMOLECULES; COMPOSITES;
   DYNAMICS
AB Nanocrystals of apatitic calcium phosphate impart the organic-inorganic nanocomposite in bone with favorable mechanical properties. So far, the factors preventing crystal growth beyond the favorable thickness of ca. 3 nm have not been identified. Here we show that the apatite surfaces are studded with strongly bound citrate molecules, whose signals have been identified unambiguously by multinuclear magnetic resonance (NMR) analysis. NMR reveals that bound citrate accounts for 5.5 wt% of the organic matter in bone and covers apatite at a density of about 1 molecule per (2 nm)(2), with its three carboxylate groups at distances of 0.3 to 0.45 nm from the apatite surface. Bound citrate is highly conserved, being found in fish, avian, and mammalian bone, which indicates its critical role in interfering with crystal thickening and stabilizing the apatite nanocrystals in bone.
C1 [Schmidt-Rohr, K.] Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
   Iowa State Univ, Dept Chem, Ames, IA 50011 USA.
RP Schmidt-Rohr, K (reprint author), Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
EM srohr@iastate.edu
RI Hu, Yan-Yan/A-1795-2015
OI Hu, Yan-Yan/0000-0003-0677-5897
FU Department of Energy, Office of Basic Energy Science, Division of
   Materials Sciences and Engineering, at the Ames Laboratory
   [DE-AC02-07CH11358]
FX This work was supported by the Department of Energy, Office of Basic
   Energy Science, Division of Materials Sciences and Engineering, at the
   Ames Laboratory, under Contract No. DE-AC02-07CH11358.
NR 42
TC 142
Z9 143
U1 5
U2 75
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 28
PY 2010
VL 107
IS 52
BP 22425
EP 22429
DI 10.1073/pnas.1009219107
PG 5
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 699SX
UT WOS:000285684200018
PM 21127269
ER

PT J
AU Miao, YC
   Liu, CJ
AF Miao, Yu-Chen
   Liu, Chang-Jun
TI ATP-binding cassette-like transporters are involved in the transport of
   lignin precursors across plasma and vacuolar membranes
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
   AMERICA
LA English
DT Article
ID INSIDE-OUT; SECONDARY METABOLITES; ARABIDOPSIS-THALIANA; SEED COAT;
   BIOSYNTHESIS; VESICLES; DIFFERENTIATION; RESISTANCE; MUTANT; XYLEM
AB Lignin is a complex biopolymer derived primarily from the condensation of three monomeric precursors, the monolignols. The synthesis of monolignols occurs in the cytoplasm. To reach the cell wall where they are oxidized and polymerized, they must be transported across the cell membrane. However, the molecular mechanisms underlying the transport process are unclear. There are conflicting views about whether the transport of these precursors occurs by passive diffusion or is an energized active process; further, we know little about what chemical forms are required. Using isolated plasma and vacuolar membrane vesicles prepared from Arabidopsis, together with applying different transporter inhibitors in the assays, we examined the uptake of monolignols and their derivatives by these native membrane vesicles. We demonstrate that the transport of lignin precursors across plasmalemma and their sequestration into vacuoles are ATP-dependent primary-transport processes, involving ATP-binding cassette-like transporters. Moreover, we show that both plasma and vacuolar membrane vesicles selectively transport different forms of lignin precursors. In the presence of ATP, the inverted plasma membrane vesicles preferentially take up monolignol aglycones, whereas the vacuolar vesicles are more specific for glucoconjugates, suggesting that the different ATP-binding cassette-like transporters recognize different chemical forms in conveying them to distinct sites, and that glucosylation of monolignols is necessary for their vacuolar storage but not required for direct transport into the cell wall in Arabidopsis.
C1 [Miao, Yu-Chen; Liu, Chang-Jun] Brookhaven Natl Lab, Dept Biol, Upton, NY 11973 USA.
RP Liu, CJ (reprint author), Brookhaven Natl Lab, Dept Biol, Upton, NY 11973 USA.
EM cliu@bnl.gov
FU Division of Chemical Sciences, Geosciences, and Biosciences, Office of
   Basic Energy Sciences of the US Department of Energy (DOE)
   [DEAC0298CH10886]; Office of Biological and Environmental Research of
   DOE [BO148]
FX This work was supported by the Division of Chemical Sciences,
   Geosciences, and Biosciences, Office of Basic Energy Sciences of the US
   Department of Energy (DOE) through Grant DEAC0298CH10886 to C.-J. L.
   Initially, this work was also partially supported by the Office of
   Biological and Environmental Research of DOE through the pilot project
   of biofuel Scientific Focus Area program (BO148).
NR 43
TC 69
Z9 72
U1 3
U2 52
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 28
PY 2010
VL 107
IS 52
BP 22728
EP 22733
DI 10.1073/pnas.1007747108
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 699SX
UT WOS:000285684200070
PM 21149736
ER

PT J
AU Schauer, MM
   Danielson, JR
   Feldbaum, D
   Rahaman, MS
   Wang, LB
   Zhang, J
   Zhao, X
   Torgerson, JR
AF Schauer, M. M.
   Danielson, J. R.
   Feldbaum, D.
   Rahaman, M. S.
   Wang, L. -B.
   Zhang, J.
   Zhao, X.
   Torgerson, J. R.
TI Isotope-selective trapping of doubly charged Yb ions
SO PHYSICAL REVIEW A
LA English
DT Article
ID ULTRAVIOLET; EXCITATION; LIFETIMES; SPACE; GAS
AB We report isotope-selective loading and trapping of doubly ionized ytterbium into an rf quadrupole trap. Isotopically pure clouds of Yb-174(+) ions were first loaded into the rf trap via a multistage photoionization process. The Yb2+ ions were then produced by electron impact ionization of the trapped Yb+ ions. The Yb2+ ions were subsequently detected by rf excitation of their secular motion in the trap, which led to sympathetic heating and changes in the fluorescence of the laser-cooled Yb+ ions. The presence of doubly charged Yb ions was further verified by the appearance of a dark band in the center of Yb+ ion cloud after electron impact ionization. We discuss the possible formation of Yb2+ H and similar compounds and the schemes for the direct optical detection of the Yb2+ ions.
C1 [Schauer, M. M.; Danielson, J. R.; Feldbaum, D.; Rahaman, M. S.; Wang, L. -B.; Zhang, J.; Zhao, X.; Torgerson, J. R.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Schauer, MM (reprint author), Los Alamos Natl Lab, POB 1663, Los Alamos, NM 87545 USA.
OI Zhao, Xinxin/0000-0001-8128-2561
FU NNSA US Department of Energy [DE-AC52-06NA25396]
FX This work was supported by the Laboratory Directed Research and
   Development program at Los Alamos National Laboratory, operated by Los
   Alamos National Security, LLC, for the NNSA US Department of Energy
   under Contract No. DE-AC52-06NA25396.
NR 24
TC 6
Z9 6
U1 0
U2 4
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1050-2947
J9 PHYS REV A
JI Phys. Rev. A
PD DEC 27
PY 2010
VL 82
IS 6
AR 062518
DI 10.1103/PhysRevA.82.062518
PG 6
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 713NR
UT WOS:000286745200007
ER

PT J
AU Fu, H
   Zou, M
   Singh, NK
AF Fu, H.
   Zou, M.
   Singh, Niraj K.
TI Modification of magnetic and magnetocaloric properties of Dy-Co-Al bulk
   metallic glass introduced by hydrogen
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID ENTROPY CHANGE; TEMPERATURE; ANISOTROPY; TB
AB Dy(53.8)Co(17.3)Al(28.9) bulk metallic glass with a diameter of 3 mm exhibits spin-glass behavior and large coercivity and remanence. Hydrogenation of Dy(53.8)Co(17.3)Al(28.9) suppresses the magnetic transition temperature and removes coercivity and remanence because of the expansion of average interatomic distance. The advantage of large magnetic entropy changes (17.5 and 9.5 J/kg K for the field changes from 0 to 50, and from 0 to 20 kOe, respectively) without any hysteresis loss makes Dy(53.8)Co(17.3)Al(28.9) H(170.6) alloy a promising magnetic refrigerant. (C) 2010 American Institute of Physics. [doi: 10.1063/1.3534794]
C1 [Fu, H.] Univ Elect Sci & Technol China, Dept Appl Phys, Chengdu 610054, Peoples R China.
   [Fu, H.; Zou, M.; Singh, Niraj K.] Iowa State Univ, Ames Lab, US DOE, Ames, IA 50011 USA.
RP Fu, H (reprint author), Univ Elect Sci & Technol China, Dept Appl Phys, Chengdu 610054, Peoples R China.
EM fuhao@uestc.edu.cn
FU U.S. Department of Energy [DE-AC02-07CH11358]; China Scholarship
   Council; National Natural Science Foundation of China [50901013]
FX The Ames Laboratory is operated by Iowa State University of Science and
   Technology for the U.S. Department of Energy under Contract No.
   DE-AC02-07CH11358. H. Fu's work at the Ames Laboratory was also
   supported by the China Scholarship Council and the National Natural
   Science Foundation of China (Grant No. 50901013). We acknowledge Dr. K.
   A. Gshneidner, Jr. and Dr. V. K. Pecharsky for their support in sample
   preparation and characterization.
NR 12
TC 5
Z9 5
U1 3
U2 13
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 27
PY 2010
VL 97
IS 26
AR 262509
DI 10.1063/1.3534794
PG 3
WC Physics, Applied
SC Physics
GA 700TV
UT WOS:000285768100054
ER

PT J
AU Gao, P
   Chen, HY
   Tyson, TA
   Liu, ZX
   Bai, JM
   Wang, LP
   Choi, YJ
   Cheong, SW
AF Gao, P.
   Chen, H. Y.
   Tyson, T. A.
   Liu, Z. X.
   Bai, J. M.
   Wang, L. P.
   Choi, Y. J.
   Cheong, S. -W.
TI Observation of anomalous phonons in orthorhombic rare-earth manganites
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID PHASE; POLARIZATION
AB We observe the appearance of a phonon near the lock-in temperature in orthorhombic REMnO3 (RE denotes rare earth) (RE: Lu and Ho) and anomalous phonon hardening in orthorhombic LuMnO3. The anomalous phonon occurs at the onset of spontaneous polarization. No such changes were found in incommensurate orthorhombic DyMnO3. These observations directly reveal different electric polarization mechanisms in the E-type and incommensurate-type orthorhombic REMnO3. (C) 2010 American Institute of Physics. [doi: 10.1063/1.3533022]
C1 [Gao, P.; Chen, H. Y.; Tyson, T. A.] New Jersey Inst Technol, Dept Phys, Newark, NJ 07102 USA.
   [Tyson, T. A.; Choi, Y. J.; Cheong, S. -W.] Rutgers State Univ, Dept Phys & Astron, Piscataway, NJ 08854 USA.
   [Tyson, T. A.; Choi, Y. J.; Cheong, S. -W.] Rutgers State Univ, Rutgers Ctr Emergent Mat, Piscataway, NJ 08854 USA.
   [Liu, Z. X.] Carnegie Inst Sci, Geophys Lab, Washington, DC 20015 USA.
   [Bai, J. M.] Oak Ridge Natl Lab, Oak Ridge, TN 37831 USA.
   [Wang, L. P.] SUNY Stony Brook, Inst Mineral Phys, Stony Brook, NY 11794 USA.
RP Gao, P (reprint author), New Jersey Inst Technol, Dept Phys, Newark, NJ 07102 USA.
EM pg35@njit.edu; tyson@adm.njit.edu
RI Chen, Haiyan/C-8109-2012; Bai, Jianming/O-5005-2015
FU DOE [DE-FG02-07ER46402, DE-FG02-07ER46382]; U.S. Department of Energy,
   Office of Science, Office of Basic Energy Sciences [DE-AC02-98CH10886];
   COMPRES, Consortium for Materials Properties Research in Earth Sciences
   under NSF [EAR01-35554]
FX This research was funded by DOE Grant Nos. DE-FG02-07ER46402 (NJIT) and
   DE-FG02-07ER46382 (Rutgers). The U2A beam line at the National
   Synchrotron Light Source is supported by COMPRES, the Consortium for
   Materials Properties Research in Earth Sciences under NSF Cooperative
   Agreement No. EAR01-35554, U.S. Department of Energy (DOE-BES and
   NNSA/CDAC). The use of the NSLS at Brookhaven National Laboratory was
   supported by the U.S. Department of Energy, Office of Science, Office of
   Basic Energy Sciences, under Contract No. DE-AC02-98CH10886.
NR 25
TC 1
Z9 1
U1 3
U2 16
PU AMER INST PHYSICS
PI MELVILLE
PA 1305 WALT WHITMAN RD, STE 300, MELVILLE, NY 11747-4501 USA
SN 0003-6951
EI 1077-3118
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 27
PY 2010
VL 97
IS 26
AR 262905
DI 10.1063/1.3533022
PG 3
WC Physics, Applied
SC Physics
GA 700TV
UT WOS:000285768100059
ER

PT J
AU Jones, WA
   Barnes, PN
   Mullins, MJ
   Baca, FJ
   Emergo, RLS
   Wu, J
   Haugan, TJ
   Clem, JR
AF Jones, W. A.
   Barnes, P. N.
   Mullins, M. J.
   Baca, F. J.
   Emergo, R. L. S.
   Wu, J.
   Haugan, T. J.
   Clem, J. R.
TI Impact of edge-barrier pinning in superconducting thin films
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID CRITICAL-CURRENT-DENSITY; CRITICAL CURRENTS; YBA2CU3O7-DELTA; FLUX;
   STRIPS
AB It has been suggested that edge-barrier pinning might cause the critical current density (J(c)) in bridged superconducting films to increase. Subsequent work indicated that this edge-barrier effect does not impact bridges larger than 1 mu m. However, we provide a theoretical assessment with supporting experimental data suggesting edge-barrier pinning can significantly enhance J(c) for bridges of a few microns or even tens of microns thus skewing any comparisons among institutions. As such, when reporting flux pinning and superconductor processing improvements for J(c) comparisons, the width of the sample has to be taken into consideration as is currently done with film thickness. (C) 2010 American Institute of Physics. [doi:10.1063/1.3529945]
C1 [Jones, W. A.; Mullins, M. J.] Univ Dayton, Dayton, OH 45469 USA.
   [Jones, W. A.; Barnes, P. N.; Mullins, M. J.; Baca, F. J.; Haugan, T. J.] USAF, Res Lab, Wright Patterson AFB, OH 45433 USA.
   [Baca, F. J.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Emergo, R. L. S.; Wu, J.] Univ Kansas, Dept Phys & Astron, Lawrence, KS 66045 USA.
   [Clem, J. R.] Iowa State Univ, Dept Phys & Astron, Ames, IA 50011 USA.
   [Clem, J. R.] Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
RP Jones, WA (reprint author), Univ Dayton, Dayton, OH 45469 USA.
EM wesley.jones@wpafb.af.mil
FU Air Force Office of Scientific Research; U.S. Department of Energy,
   Office of Basic Energy Science, Division of Materials Sciences and
   Engineering [DE-AC02-07CH11358]
FX The Air Force Office of Scientific Research supported this work. We
   thank R. L. Dunning and J. A. Connors for their help. The University of
   Kansas thanks the National Science Foundation and the Department of
   Energy. Theoretical work at the Ames Laboratory, Iowa State University,
   was supported by the U.S. Department of Energy, Office of Basic Energy
   Science, Division of Materials Sciences and Engineering, under Contract
   No. DE-AC02-07CH11358.
NR 25
TC 9
Z9 9
U1 3
U2 14
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 27
PY 2010
VL 97
IS 26
AR 262503
DI 10.1063/1.3529945
PG 3
WC Physics, Applied
SC Physics
GA 700TV
UT WOS:000285768100048
ER

PT J
AU Ihlefeld, JF
   Folkman, CM
   Baek, SH
   Brennecka, GL
   George, MC
   Carroll, JF
   Eom, CB
AF Ihlefeld, J. F.
   Folkman, C. M.
   Baek, S. H.
   Brennecka, G. L.
   George, M. C.
   Carroll, J. F., III
   Eom, C. B.
TI Effect of domain structure on dielectric nonlinearity in epitaxial
   BiFeO3 films
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID THIN-FILMS; FERROELECTRIC PROPERTIES; PIEZOELECTRIC CERAMICS;
   PERMITTIVITY
AB Rayleigh analysis has been used to investigate dielectric nonlinearity in epitaxial (001)-oriented BiFeO3 films with engineered domain structures from single-to four-variant and stripe domain samples with 71 and 109 domain walls. Single-domain variant films display minimal irreversible contributions, whereas the ratio of irreversible to reversible contributions increases by approximately one order of magnitude as the number of variants increases to two-and four-variants, respectively. These measurements indicate that the density of domain walls and degree of domain wall complexity influence the number and strength of domain wall pinning sites. (C) 2010 American Institute of Physics. [doi: 10.1063/1.3533017]
C1 [Ihlefeld, J. F.; Brennecka, G. L.; George, M. C.; Carroll, J. F., III] Sandia Natl Labs, Albuquerque, NM 87185 USA.
   [Folkman, C. M.; Baek, S. H.; Eom, C. B.] Univ Wisconsin, Dept Mat Sci & Engn, Madison, WI 53706 USA.
RP Ihlefeld, JF (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
EM jihlefe@sandia.gov
RI Ihlefeld, Jon/B-3117-2009; Brennecka, Geoff/J-9367-2012; Baek,
   Seung-Hyub/B-9189-2013; Eom, Chang-Beom/I-5567-2014
OI Brennecka, Geoff/0000-0002-4476-7655; 
FU Army Research Office [W911NF-10-1-0362]; National Science Foundation
   [ECCS-0708759]; David and Lucile Packard Fellowship; United States
   Department of Energy's National Nuclear Security Administration
   [DE-AC04-94AL85000]
FX The authors gratefully acknowledge the financial support of Army
   Research Office under Grant No. W911NF-10-1-0362, the National Science
   Foundation under Grant No. ECCS-0708759, and David and Lucile Packard
   Fellowship (UW-M). Sandia is a multiprogram laboratory operated by
   Sandia Corporation, a Lockheed Martin Co., for the United States
   Department of Energy's National Nuclear Security Administration under
   Contract No. DE-AC04-94AL85000.
NR 19
TC 11
Z9 11
U1 0
U2 26
PU AMER INST PHYSICS
PI MELVILLE
PA 1305 WALT WHITMAN RD, STE 300, MELVILLE, NY 11747-4501 USA
SN 0003-6951
EI 1077-3118
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 27
PY 2010
VL 97
IS 26
AR 262904
DI 10.1063/1.3533017
PG 3
WC Physics, Applied
SC Physics
GA 700TV
UT WOS:000285768100058
ER

PT J
AU Lo, CF
   Kang, TS
   Liu, L
   Chang, CY
   Pearton, SJ
   Kravchenko, II
   Laboutin, O
   Johnson, JW
   Ren, F
AF Lo, C. F.
   Kang, T. S.
   Liu, L.
   Chang, C. Y.
   Pearton, S. J.
   Kravchenko, I. I.
   Laboutin, O.
   Johnson, J. W.
   Ren, F.
TI Isolation blocking voltage of nitrogen ion-implanted AlGaN/GaN high
   electron mobility transistor structure
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID GAN; HEMTS; IRRADIATION; PERFORMANCE; BREAKDOWN; LAYERS; MBE
AB Nitrogen ion-implanted AlGaN/GaN high electron mobility transistor structures showed an isolation blocking voltage of 900 V with a leakage current at 1 mu A/mm across an implanted isolation-gap of 10 mu m between two Ohmic pads. The effect of implanted gap distance (1.7, 5, or 10 mu m) between two Ohmic contact pads was evaluated. The isolation current density was determined to be solely dependent on the applied field between the contact pads. A model using a combination of resistive current and Poole-Frenkel current is consistent with the experimental data. The resistance of the isolation implantation region significantly decreased after the sample was annealed at temperatures above 600 degrees C. (C) 2010 American Institute of Physics. [doi:10.1063/1.3533381]
C1 [Lo, C. F.; Kang, T. S.; Liu, L.; Ren, F.] Univ Florida, Dept Chem Engn, Gainesville, FL 32611 USA.
   [Chang, C. Y.; Pearton, S. J.] Univ Florida, Dept Mat Sci & Engn, Gainesville, FL 32611 USA.
   [Kravchenko, I. I.] Oak Ridge Natl Lab, Ctr Nanophase Mat Sci, Oak Ridge, TN 37830 USA.
   [Laboutin, O.; Johnson, J. W.] Kopin Corp, Taunton, MA 02780 USA.
RP Lo, CF (reprint author), Univ Florida, Dept Chem Engn, Gainesville, FL 32611 USA.
EM fren@che.ufl.edu
RI LIU, LU/H-2307-2013; Kravchenko, Ivan/K-3022-2015
OI LIU, LU/0000-0001-7256-3775; Kravchenko, Ivan/0000-0003-4999-5822
FU AFOSR MURI; Scientific User Facilities Division, U.S. Department of
   Energy
FX The work performed at UF is supported by an AFOSR MURI monitored by
   Gregg Jessen and Kitt Reinhardt. Part of the work conducted at the
   Center for Nanophase Materials Science in Oak Ridge National Laboratory
   was sponsored by the Scientific User Facilities Division, U.S.
   Department of Energy.
NR 20
TC 23
Z9 23
U1 2
U2 17
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 27
PY 2010
VL 97
IS 26
AR 262116
DI 10.1063/1.3533381
PG 3
WC Physics, Applied
SC Physics
GA 700TV
UT WOS:000285768100042
ER

PT J
AU Vergniory, MG
   Granadino-Roldan, JM
   Garcia-Lekue, A
   Wang, LW
AF Vergniory, M. G.
   Granadino-Roldan, J. M.
   Garcia-Lekue, A.
   Wang, Lin-Wang
TI Molecular conductivity switching of two benzene rings under electric
   field
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID TRANSPORT; DENSITY
AB A molecular transistor based on torsion-angle conformation change driven by gate electric field is designed and studied using ab initio calculations. This transistor consists of a SH-C(6)H(2)F(CH(3))C(6)H(2)(CH(3))F-SH molecule sandwiched between two Au(111) electrodes, where the interaction between the molecular dipole and a gate voltage induced electric field will cause the molecule to twist along its c-axis, changing the quantum conductivity of the molecule. The effect of thermal fluctuation on the molecular conformation is studied, so is the ability of the transistor to shut off its current. The advantages and challenges of using such molecular conformation change as a mechanism for transistor gating are discussed. (C) 2010 American Institute of Physics. [doi:10.1063/1.3533383]
C1 [Vergniory, M. G.; Garcia-Lekue, A.] DIPC, Basque Country 20018, Spain.
   [Vergniory, M. G.; Wang, Lin-Wang] Univ Calif Berkeley, Lawrence Berkeley Lab, Computat Res Div, Berkeley, CA 94720 USA.
   [Granadino-Roldan, J. M.] Univ Jaen, Dept Phys & Analyt Chem, E-23071 Jaen, Spain.
RP Vergniory, MG (reprint author), DIPC, Basque Country 20018, Spain.
EM maiagv@gmail.com
RI Granadino-Roldan, Jose M./A-6557-2011; DONOSTIA INTERNATIONAL PHYSICS
   CTR., DIPC/C-3171-2014
OI Granadino-Roldan, Jose M./0000-0002-9527-1158; 
FU U.S. Department of Energy BES/SC [DE-AC02-05CH11231]; Consejeria de
   Innovacion Ciencia y Empresa, Junta de Andalucia [PAI-FQM 337,
   FQM-P06-01864]; Basque Departamento de Educacion; UPV/EHU; Diputacion
   Foral de Guipuzcoa; Spanish MICINN [FIS2010-19609-C02-02]
FX This work has been supported partially by the U.S. Department of Energy
   BES/SC under Contract No. DE-AC02-05CH11231, Consejeria de Innovacion
   Ciencia y Empresa, Junta de Andalucia (Contract Nos. PAI-FQM 337 and
   FQM-P06-01864), Basque Departamento de Educacion, UPV/EHU, the
   Diputacion Foral de Guipuzcoa, and the Spanish MICINN (Grant No.
   FIS2010-19609-C02-02). This research used the resource of the National
   Energy Research Scientific Computing Center (NERSC).
NR 21
TC 13
Z9 13
U1 2
U2 10
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 27
PY 2010
VL 97
IS 26
AR 262114
DI 10.1063/1.3533383
PG 3
WC Physics, Applied
SC Physics
GA 700TV
UT WOS:000285768100040
ER

PT J
AU Kato, Y
   Martin, I
   Batista, CD
AF Kato, Yasuyuki
   Martin, Ivar
   Batista, C. D.
TI Stability of the Spontaneous Quantum Hall State in the Triangular
   Kondo-Lattice Model
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID PHASE-TRANSITION; BERRY PHASE; MAGNETORESISTANCE; ANTIFERROMAGNET;
   FERROMAGNET
AB We study the behavior of the quarter-filled Kondo-lattice model on a triangular lattice by combining a zero-temperature variational approach and finite-temperature Monte Carlo simulations. For intermediate coupling between itinerant electrons and classical moments S(j), we find a thermodynamic phase transition into an exotic spin ordering with uniform scalar spin chirality and < S(j)> = 0. The state exhibits a spontaneous quantum Hall effect. We also study how its properties are affected by the application of an external magnetic field.
C1 [Kato, Yasuyuki; Martin, Ivar; Batista, C. D.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
RP Kato, Y (reprint author), Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
RI Batista, Cristian/J-8008-2016
FU NNSA of the U.S. DOE at LANL [DE-AC52-06NA25396]; LANL/LDRD Program
FX We thank S. Nakatsuji and Y. Motome for useful discussions. This work
   was carried out under the auspices of the NNSA of the U.S. DOE at LANL
   under Contract No. DE-AC52-06NA25396 and supported by the LANL/LDRD
   Program. This research used resources of the NERSC Center.
NR 26
TC 36
Z9 36
U1 4
U2 16
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 27
PY 2010
VL 105
IS 26
AR 266405
DI 10.1103/PhysRevLett.105.266405
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713UQ
UT WOS:000286763300005
PM 21231691
ER

PT J
AU McBride, RD
   Jennings, CA
   Vesey, RA
   Rochau, GA
   Savage, ME
   Stygar, WA
   Cuneo, ME
   Sinars, DB
   Jones, M
   LeChien, KR
   Lopez, MR
   Moore, JK
   Struve, KW
   Wagoner, TC
   Waisman, EM
AF McBride, R. D.
   Jennings, C. A.
   Vesey, R. A.
   Rochau, G. A.
   Savage, M. E.
   Stygar, W. A.
   Cuneo, M. E.
   Sinars, D. B.
   Jones, M.
   LeChien, K. R.
   Lopez, M. R.
   Moore, J. K.
   Struve, K. W.
   Wagoner, T. C.
   Waisman, E. M.
TI Displacement current phenomena in the magnetically insulated
   transmission lines of the refurbished Z accelerator
SO PHYSICAL REVIEW SPECIAL TOPICS-ACCELERATORS AND BEAMS
LA English
DT Article
ID Z-PINCHES; SIMULATIONS; GENERATION; IMPEDANCE; FLOW
AB Experimental data is presented that illustrates important displacement current phenomena in the magnetically insulated transmission lines (MITLs) of the refurbished Z accelerator [D. V. Rose et al., Phys. Rev. ST Accel. Beams 13, 010402 (2010)]. Specifically, we show how displacement current in the MITLs causes significant differences between the accelerator current measured at the vacuum-insulator stack (at a radial position of about 1.6 m from the Z axis of symmetry) and the accelerator current measured at the load (at a radial position of about 6 cm from the Z axis of symmetry). The importance of accounting for these differences was first emphasized by Jennings et al. [C. A. Jennings et al., IEEE Trans. Plasma Sci. 38, 529 (2010)], who calculated them using a full transmission-line-equivalent model of the four-level MITL system. However, in the data presented by Jennings et al., many of the interesting displacement current phenomena were obscured by parasitic current losses that occurred between the vacuum-insulator stack and the load (e.g., electron flow across the anode-cathode gap). By contrast, the data presented herein contain very little parasitic current loss, and thus for these low-loss experiments we are able to demonstrate that the differences between the current measured at the stack and the current measured at the load are due primarily to the displacement current that results from the shunt capacitance of the MITLs (about 8.41 nF total). Demonstrating this is important because displacement current is an energy storage mechanism, where energy is stored in the MITL electric fields and can later be used by the system. Thus, even for higher-loss experiments, the differences between the current measured at the stack and the current measured at the load are often largely due to energy storage and subsequent release, as opposed to being due solely to some combination of measurement error and current loss in the MITLs and/or double post-hole convolute. Displacement current also explains why the current measured downstream of the MITLs (i.e., the load current) often exceeds the current measured upstream of the MITLs (i.e., the stack current) at various times in the power pulse (this particular phenomenon was initially thought to be due to timing and/or calibration errors). To facilitate a better understanding of these phenomena, we also introduce and analyze a simple LC circuit model of the MITLs. This model is easily implemented as a simple drive circuit in simulation codes, which has now been done for the LASNEX code [G. B. Zimmerman and W. L. Kruer, Comments Plasma Phys. Controlled Fusion 2, 51 (1975)] at Sandia, as well as for simpler MATLAB (R)-based codes at Sandia. An example of this LC model used as a drive circuit will also be presented.
C1 [McBride, R. D.; Jennings, C. A.; Vesey, R. A.; Rochau, G. A.; Savage, M. E.; Stygar, W. A.; Cuneo, M. E.; Sinars, D. B.; Jones, M.; LeChien, K. R.; Lopez, M. R.; Struve, K. W.; Waisman, E. M.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
   [Moore, J. K.; Wagoner, T. C.] Ktech Corp Inc, Albuquerque, NM 87123 USA.
RP McBride, RD (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
FU United States Department of Energy's National Nuclear Security
   Administration [DE-AC04-94AL85000]
FX The authors would like to thank M. K. Matzen, M. C. Herrmann, and J. L.
   Porter for programmatic support, and the Z operations, diagnostics,
   engineering, load hardware, and target teams for their technical
   assistance. Sandia is a multiprogram laboratory operated by Sandia
   Corporation, a Lockheed-Martin company, for the United States Department
   of Energy's National Nuclear Security Administration, under Contract No.
   DE-AC04-94AL85000.
NR 40
TC 8
Z9 9
U1 0
U2 6
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-4402
J9 PHYS REV SPEC TOP-AC
JI Phys. Rev. Spec. Top.-Accel. Beams
PD DEC 27
PY 2010
VL 13
IS 12
AR 120401
DI 10.1103/PhysRevSTAB.13.120401
PG 9
WC Physics, Nuclear; Physics, Particles & Fields
SC Physics
GA 701DA
UT WOS:000285793300001
ER

PT J
AU Cook, BA
   Harringa, JL
   Anderegg, J
   Russell, AM
   Qu, J
   Blau, PJ
   Higdon, C
   Elmoursi, AA
AF Cook, Bruce A.
   Harringa, Joel L.
   Anderegg, James
   Russell, Alan M.
   Qu, Jun
   Blau, Peter J.
   Higdon, Clifton
   Elmoursi, Alaa A.
TI Analysis of wear mechanisms in low-friction AlMgB14-TiB2 coatings
SO SURFACE & COATINGS TECHNOLOGY
LA English
DT Article
DE Tribology; Boride; Coating; Auger spectroscopy; XPS; Wear
ID DIAMOND-LIKE CARBON; INDUCED PHASE-TRANSFORMATION; FILMS
AB Recent developments in coating science and technology offer new opportunities to enhance the energy-efficiency and performance of industrial machinery such as hydraulic fluid pumps and motors. The lubricated friction and wear characteristics of two wear-resistant coatings, diamond-like carbon and a nanocomposite material based on AlMgB14-50 vol.% TiB2, were compared in pin-on-disk tribotests using Mobil DTE-24 (TM) oil as the lubricant. In each case, the pins were fixed 9.53 mm diameter spheres of AISI 52100 steel, the load was 10 N, and the speed 0.5 m/s in all tests. Average steady-state friction coefficient values of 0.10 and 0.08 were measured for the DLC and nanocomposite, respectively. The coatings and their 52100 steel counterfaces were analyzed after the tests by X-ray photoelectron and Auger spectroscopy for evidence of material transfer or tribo-chemical reactions. The low-friction behavior of the boride nanocomposite coating is due to the formation of lubricative boric acid, B(OH)(3). In contrast, the low-friction behavior of the DLC coating is related to the relatively low dielectric constant of the oil-based lubricant, leading to desorption of surface hydrogen from the coating. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Cook, Bruce A.; Harringa, Joel L.; Anderegg, James] Iowa State Univ, Div Mat Sci & Engn, Ames Lab, Ames, IA 50011 USA.
   [Qu, Jun; Blau, Peter J.] Oak Ridge Natl Lab, Mat Sci & Technol Div, Oak Ridge, TN 37830 USA.
   [Higdon, Clifton; Elmoursi, Alaa A.] Eaton Corp, Innovat Ctr, Southfield, MI 48076 USA.
RP Cook, BA (reprint author), Iowa State Univ, Div Mat Sci & Engn, Ames Lab, Ames, IA 50011 USA.
EM cook@ameslab.gov
OI Qu, Jun/0000-0001-9466-3179; Russell, Alan/0000-0001-5264-0104
FU Iowa State University [DE-AC02-07CH11358]; U.S. Department of Energy; 
   [DE-AC05-00OR22725]
FX The Ames Laboratory is operated for the U.S. Department of Energy by
   Iowa State University under contract DE-AC02-07CH11358. Oak Ridge
   National Laboratory is operated under contract to UT-Battelle LLC under
   contract DE-AC05-00OR22725. This work was supported by the U.S.
   Department of Energy, EERE Industrial Technologies Program.
NR 19
TC 18
Z9 19
U1 1
U2 22
PU ELSEVIER SCIENCE SA
PI LAUSANNE
PA PO BOX 564, 1001 LAUSANNE, SWITZERLAND
SN 0257-8972
J9 SURF COAT TECH
JI Surf. Coat. Technol.
PD DEC 25
PY 2010
VL 205
IS 7
BP 2296
EP 2301
DI 10.1016/j.surfcoat.2010.09.007
PG 6
WC Materials Science, Coatings & Films; Physics, Applied
SC Materials Science; Physics
GA 708DY
UT WOS:000286343100068
ER

PT J
AU Jones, MK
   Zhang, L
   Catte, A
   Li, L
   Oda, MN
   Ren, G
   Segrest, JP
AF Jones, Martin K.
   Zhang, Lei
   Catte, Andrea
   Li, Ling
   Oda, Michael N.
   Ren, Gang
   Segrest, Jere P.
TI Assessment of the Validity of the Double Superhelix Model for
   Reconstituted High Density Lipoproteins A COMBINED
   COMPUTATIONAL-EXPERIMENTAL APPROACH
SO JOURNAL OF BIOLOGICAL CHEMISTRY
LA English
DT Article
ID GRADIENT GEL-ELECTROPHORESIS; MOLECULAR-DYNAMICS; ELECTRON-MICROSCOPY;
   PLASMA-LIPOPROTEINS; NEUTRON-SCATTERING; FORCE-FIELD; APOA-I; HDL;
   CHOLESTEROL; PHOSPHATIDYLCHOLINE
AB For several decades, the standard model for high density lipoprotein (HDL) particles reconstituted from apolipoprotein A-I (apoA-I) and phospholipid (apoA-I/HDL) has been a discoidal particle similar to 100 angstrom in diameter and the thickness of a phospholipid bilayer. Recently, Wu et al. (Wu, Z., Gogonea, V., Lee, X., Wagner, M. A., Li, X. M., Huang, Y., Undurti, A., May, R. P., Haertlein, M., Moulin, M., Gutsche, I., Zaccai, G., Didonato, J. A., and Hazen, S. L. (2009) J. Biol. Chem. 284, 3660536619) used small angle neutron scattering to develop a new model they termed double superhelix (DSH) apoA-I that is dramatically different from the standard model. Their model possesses an open helical shape that wraps around a prolate ellipsoidal type I hexagonal lyotropic liquid crystalline phase. Here, we used three independent approaches, molecular dynamics, EM tomography, and fluorescence resonance energy transfer spectroscopy (FRET) to assess the validity of the DSH model. (i) By using molecular dynamics, two different approaches, all-atom simulated annealing and coarse-grained simulation, show that initial ellipsoidal DSH particles rapidly collapse to discoidal bilayer structures. These results suggest that, compatible with current knowledge of lipid phase diagrams, apoA-I cannot stabilize hexagonal I phase particles of phospholipid. (ii) By using EM, two different approaches, negative stain and cryo-EM tomography, show that reconstituted apoA-I/HDL particles are discoidal in shape. (iii) By using FRET, reconstituted apoA-I/HDL particles show a 28 -34-angstrom intermolecular separation between terminal domain residues 40 and 240, a distance that is incompatible with the dimensions of the DSH model. Therefore, we suggest that, although novel, the DSH model is energetically unfavorable and not likely to be correct. Rather, we conclude that all evidence supports the likelihood that reconstituted apoA-I/HDL particles, in general, are discoidal in shape.
C1 [Jones, Martin K.; Catte, Andrea; Li, Ling; Segrest, Jere P.] Univ Alabama Birmingham, Dept Med, Birmingham, AL 35294 USA.
   [Jones, Martin K.; Catte, Andrea; Li, Ling; Segrest, Jere P.] Univ Alabama Birmingham, Atherosclerosis Res Unit, Birmingham, AL 35294 USA.
   [Jones, Martin K.; Catte, Andrea; Segrest, Jere P.] Univ Alabama Birmingham, Ctr Computat & Struct Dynam, Birmingham, AL 35294 USA.
   [Zhang, Lei; Ren, Gang] Univ Calif Berkeley, Lawrence Berkeley Lab, Mol Foundry, Berkeley, CA 94720 USA.
   [Zhang, Lei; Ren, Gang] Univ Calif San Francisco, Dept Biochem & Biophys, San Francisco, CA 94158 USA.
   [Oda, Michael N.] Childrens Hosp Oakland Res Inst, Oakland, CA 94609 USA.
RP Segrest, JP (reprint author), 1808 7th Ave S,BDB 630, Birmingham, AL 35294 USA.
EM segrest@uab.edu
RI Zhang, Lei/G-6427-2012
OI Zhang, Lei/0000-0002-4880-824X
FU National Institutes of Health [P01 HL-34343]; W. M. Keck Foundation
   [011808]
FX This work was supported, in whole or in part, by National Institutes of
   Health Grant P01 HL-34343 (to J. P. S.). This work was also supported by
   W. M. Keck Foundation (No. 011808, to G. R.).
NR 48
TC 32
Z9 32
U1 0
U2 10
PU AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3996 USA
SN 0021-9258
J9 J BIOL CHEM
JI J. Biol. Chem.
PD DEC 24
PY 2010
VL 285
IS 52
BP 41161
EP 41171
DI 10.1074/jbc.M110.187799
PG 11
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 696AN
UT WOS:000285414400078
PM 20974855
ER

PT J
AU Sirinupong, N
   Brunzelle, J
   Ye, J
   Pirzada, A
   Nico, L
   Yang, Z
AF Sirinupong, Nualpun
   Brunzelle, Joseph
   Ye, Jun
   Pirzada, Ali
   Nico, Lindsey
   Yang, Zhe
TI Crystal Structure of Cardiac-specific Histone Methyltransferase SmyD1
   Reveals Unusual Active Site Architecture
SO JOURNAL OF BIOLOGICAL CHEMISTRY
LA English
DT Article
ID TRANSCRIPTION FACTOR; FUNCTIONAL-ANALYSIS; ZEBRAFISH EMBRYOS;
   CANCER-CELLS; MYND DOMAIN; METHYLATION; PROTEIN; SET7/9; MECHANISM;
   SOFTWARE
AB SmyD1 is a cardiac-and muscle-specific histone methyltransferase that methylates histone H3 at lysine 4 and regulates gene transcription in early heart development. The unique domain structure characterized by a "split" SET domain, a conserved MYND zinc finger, and a novel C-terminal domain (CTD) distinguishes SmyD1 from other SET domain containing methyltransferases. Here we report the crystal structure of full-length SmyD1 in complex with the cofactor analog sinefungin at 2.3 angstrom. The structure reveals that SmyD1 folds into a wrench-shaped structure with two thick "grips" separated by a large, deep concave opening. Importantly, our structural and functional analysis suggests that SmyD1 appears to be regulated by an autoinhibition mechanism, and that unusually spacious target lysine-access channel and the presence of the CTD domain both negatively contribute to the regulation of this cardiovascularly relevant methyltransferase. Furthermore, our structure also provides a structural basis for the interaction between SmyD1 and cardiac transcription factor skNAC, and suggests that the MYND domain may primarily serve as a protein interaction module and cooperate SmyD1 with skNAC to regulate cardiomyocyte growth and maturation. Overall, our data provide novel insights into the mechanism of SmyD1 regulation, which would be helpful in further understanding the role of this protein in heart development and cardiovascular diseases.
C1 [Sirinupong, Nualpun; Ye, Jun; Pirzada, Ali; Nico, Lindsey; Yang, Zhe] Wayne State Univ, Dept Biochem & Mol Biol, Sch Med, Detroit, MI USA.
   [Brunzelle, Joseph] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
RP Yang, Z (reprint author), 540 E Canfield St, Detroit, MI 48201 USA.
EM zyang@med.wayne.edu
FU American Heart Association
FX This work was supported by the American Heart Association.
NR 31
TC 39
Z9 41
U1 1
U2 8
PU AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3996 USA
SN 0021-9258
J9 J BIOL CHEM
JI J. Biol. Chem.
PD DEC 24
PY 2010
VL 285
IS 52
DI 10.1074/jbc.M110.168187
PG 10
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 696AN
UT WOS:000285414400026
PM 20943667
ER

PT J
AU Urban, J
   Svec, F
   Frechet, JMJ
AF Urban, Jiri
   Svec, Frantisek
   Frechet, Jean M. J.
TI Hypercrosslinking: New approach to porous polymer monolithic capillary
   columns with large surface area for the highly efficient separation of
   small molecules
SO JOURNAL OF CHROMATOGRAPHY A
LA English
DT Article
DE Hypercrosslinked polymer monolith; Poly(styrene-co-vinylbenzyl
   chloride-co-divinylbenzene); Reversed phase chromatography;
   Size-exclusion chromatography; Small molecules
ID PERFORMANCE LIQUID-CHROMATOGRAPHY; SIZE-EXCLUSION CHROMATOGRAPHY;
   REVERSED-PHASE CHROMATOGRAPHY; STABLE FREE-RADICALS; STATIONARY PHASES;
   MACROPOROUS POLY(STYRENE-CO-DIVINYLBENZENE); ORGANIC MONOLITHS; HYDROGEN
   STORAGE; PACKING MATERIAL; HPLC COLUMN
AB Monolithic polymers with an unprecedented surface area of over 600 m(2)/g have been prepared from a poly(styrene-co-vinylbenzyl chloride-co-divinylbenzene) precursor monolith that was swollen in 1,2-dichloroethane and hypercrosslinked via Friedel-Crafts reaction catalyzed by ferric chloride. Both the composition of the reaction mixture used for the preparation of the precursor monolith and the conditions of the hypercrosslinking reaction have been varied using mathematical design of experiments and the optimized system validated. Hypercrosslinked monolithic capillary columns contain an array of small pores that make the column ideally suited for the high efficiency isocratic separations of small molecules such as uracil and alkylbenzenes with column efficiencies reproducibly exceeding 80,000 plates/m for retained compounds. The separation process could be accelerated while also improving peak shape through the use of higher temperatures and a ternary mobile phase consisting of acetonitrile, tetrahydrofuran, and water. As a result, seven compounds were well separated in less than 2 min. These columns also facilitate separations of peptide mixtures such as a tryptic digest of cytochrome c using a gradient elution mode which affords a sequence coverage of 93%. A 65 cm long hypercrosslinked capillary column used in size exclusion mode with tetrahydrofuran as the mobile phase afforded almost baseline separation of toluene and five polystyrene standards. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Urban, Jiri; Frechet, Jean M. J.] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
   [Svec, Frantisek; Frechet, Jean M. J.] EO Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA.
RP Frechet, JMJ (reprint author), Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
EM frechet1@gmail.com
RI Urban, Jiri/D-1133-2014; 
OI Frechet, Jean /0000-0001-6419-0163
FU National Institute of Health [GM48364]; Office of Science, Office of
   Basic Energy Sciences, U.S. Department of Energy [DE-AC02-05CH11231]
FX Financial support of this research by a grant of the National Institute
   of Health (GM48364) is gratefully acknowledged. Analytical work
   performed at the Molecular Foundry, Lawrence Berkeley National
   Laboratory and F.S. were supported by the Office of Science, Office of
   Basic Energy Sciences, U.S. Department of Energy, under Contract No.
   DE-AC02-05CH11231.
NR 76
TC 97
Z9 98
U1 12
U2 121
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0021-9673
EI 1873-3778
J9 J CHROMATOGR A
JI J. Chromatogr. A
PD DEC 24
PY 2010
VL 1217
IS 52
BP 8212
EP 8221
DI 10.1016/j.chroma.2010.10.100
PG 10
WC Biochemical Research Methods; Chemistry, Analytical
SC Biochemistry & Molecular Biology; Chemistry
GA 702MS
UT WOS:000285899400017
PM 21092973
ER

PT J
AU Padgett, S
   Madurga, M
   Grzywacz, R
   Darby, IG
   Liddick, SN
   Paulauskas, SV
   Cartegni, L
   Bingham, CR
   Gross, CJ
   Rykaczewski, K
   Shapira, D
   Stracener, DW
   Mendez, AJ
   Winger, JA
   Ilyushkin, SV
   Korgul, A
   Krolas, W
   Zganjar, E
   Mazzocchi, C
   Liu, S
   Hamilton, JH
   Batchelder, JC
   Rajabali, MM
AF Padgett, S.
   Madurga, M.
   Grzywacz, R.
   Darby, I. G.
   Liddick, S. N.
   Paulauskas, S. V.
   Cartegni, L.
   Bingham, C. R.
   Gross, C. J.
   Rykaczewski, K.
   Shapira, D.
   Stracener, D. W.
   Mendez H, A. J.
   Winger, J. A.
   Ilyushkin, S. V.
   Korgul, A.
   Krolas, W.
   Zganjar, E.
   Mazzocchi, C.
   Liu, S.
   Hamilton, J. H.
   Batchelder, J. C.
   Rajabali, M. M.
TI beta decay of Zn-81 and migrations of states observed near the N=50
   closed shell
SO PHYSICAL REVIEW C
LA English
DT Article
ID NEUTRON-RICH ISOTOPES; STABILITY
AB The beta decay of the N = 51 nucleus Zn-81 was studied by means of beta-gamma spectroscopy and from isotopically pure beams produced at the Holifield Radioactive Ion Beam Facility (HRIBF). We observe several competing beta transitions populating Ga-81 that are interpreted as allowed Gamow-Teller decays to positive parity, core excited states, and first-forbidden decays to negative parity states. The measured beta-decay pattern suggests an assignment of I-pi = 5/2(+) for the Zn-81 ground state. The systematics of core excited states in N = 50 isotones indicate a strengthening of the N = 40 subshell gap near Ni-78.
C1 [Padgett, S.; Madurga, M.; Grzywacz, R.; Darby, I. G.; Liddick, S. N.; Paulauskas, S. V.; Cartegni, L.; Bingham, C. R.; Rajabali, M. M.] Univ Tennessee, Dept Phys & Astron, Knoxville, TN 37996 USA.
   [Gross, C. J.; Rykaczewski, K.; Shapira, D.; Stracener, D. W.; Mendez H, A. J.] Oak Ridge Natl Lab, Div Phys, Oak Ridge, TN 37830 USA.
   [Winger, J. A.; Ilyushkin, S. V.] Mississippi State Univ, Dept Phys & Astron, Mississippi State, MS 39762 USA.
   [Korgul, A.; Mazzocchi, C.] Univ Warsaw, Fac Phys, PL-00681 Warsaw, Poland.
   [Krolas, W.] Polish Acad Sci, Inst Nucl Phys, PL-31342 Krakow, Poland.
   [Zganjar, E.] Louisiana State Univ, Dept Phys & Astron, Baton Rouge, LA 70803 USA.
   [Mazzocchi, C.] Univ Milan, I-20133 I Milano, Italy.
   [Mazzocchi, C.] Ist Nazl Fis Nucl, Sez Milano, I-20133 I Milano, Italy.
   [Liu, S.; Hamilton, J. H.] Vanderbilt Univ, Dept Phys & Astron, Nashville, TN 37235 USA.
   [Batchelder, J. C.] Oak Ridge Associated Univ, UNIRIB, Oak Ridge, TN 37831 USA.
RP Padgett, S (reprint author), Univ Tennessee, Dept Phys & Astron, Knoxville, TN 37996 USA.
RI Krolas, Wojciech/N-9391-2013
FU Office of Science, US Department of Energy [DE-AC05-00OR22725,
   DE-FG02-96ER40983]
FX We thank the HRIBF operations staff for providing the excellent quality
   radioactive ion beams necessary for this work. We thank M. Hjorth-Jensen
   for supplying his N3LO nucleon-nucleon interactions and for the use of
   his shell-model calculation code. This research is sponsored by the
   Office of Science, US Department of Energy under Contract Nos.
   DE-AC05-00OR22725 (ORNL) and DE-FG02-96ER40983 (UTK).
NR 29
TC 18
Z9 18
U1 0
U2 7
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2469-9985
EI 2469-9993
J9 PHYS REV C
JI Phys. Rev. C
PD DEC 23
PY 2010
VL 82
IS 6
AR 064314
DI 10.1103/PhysRevC.82.064314
PG 9
WC Physics, Nuclear
SC Physics
GA 713MK
UT WOS:000286741900002
ER

PT J
AU Barone, V
   Melis, S
   Prokudin, A
AF Barone, Vincenzo
   Melis, Stefano
   Prokudin, Alexei
TI Azimuthal asymmetries in unpolarized Drell-Yan processes and the
   Boer-Mulders distributions of antiquarks
SO PHYSICAL REVIEW D
LA English
DT Article
ID DEEP-INELASTIC SCATTERING; FINAL-STATE INTERACTIONS; SINGLE-SPIN
   ASYMMETRIES; ANGULAR-DISTRIBUTIONS; PARTON DISTRIBUTIONS;
   TRANSVERSE-MOMENTUM; ODD DISTRIBUTION; NEGATIVE PIONS; PAIRS;
   LEPTOPRODUCTION
AB Using a previous extraction of the quark Boer-Mulders distributions from semi-inclusive deep inelastic scattering data, we fit the unpolarized Drell-Yan data on the cos2 phi asymmetry, determining the antiquark Boer-Mulders distributions. A good agreement with the data is found in the region of low q(T), where the transverse-momentum factorization approach applies.
C1 [Barone, Vincenzo; Melis, Stefano] Univ Piemonte Orientale, DiSTA, I-15121 Alessandria, Italy.
   [Barone, Vincenzo; Melis, Stefano] Ist Nazl Fis Nucl, Grp Coll Alessandria, I-15121 Alessandria, Italy.
   [Prokudin, Alexei] Jefferson Lab, Newport News, VA 23606 USA.
RP Barone, V (reprint author), Univ Piemonte Orientale, DiSTA, I-15121 Alessandria, Italy.
OI Melis, Stefano/0000-0001-7316-4346
FU European Community [RII3-CT-2004-506078]; Italian Ministry of Education,
   University and Research; Helmholtz Association [VH-VI-231]; Regione
   Piemonte; DOE [DE-AC05-06OR23177]
FX We acknowledge support by the European Community-Research Infrastructure
   Activity under the FP6 Program "Structuring the European Research Area''
   (Hadron Physics, Contract No. RII3-CT-2004-506078), by the Italian
   Ministry of Education, University and Research (PRIN 2008) and by the
   Helmholtz Association through funds provided to the virtual institute
   "Spin and Strong QCD'' (VH-VI-231). The work of one of us (S. M.) is
   also supported by Regione Piemonte. This work was supported by DOE
   Contract No. DE-AC05-06OR23177, under which Jefferson Science
   Associates, LLC, operates Jefferson Laboratory.
NR 52
TC 20
Z9 20
U1 0
U2 1
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 23
PY 2010
VL 82
IS 11
AR 114025
DI 10.1103/PhysRevD.82.114025
PG 5
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711HI
UT WOS:000286577300003
ER

PT J
AU Boers, R
   de Haij, MJ
   Wauben, WMF
   Baltink, HK
   van Ulft, LH
   Savenije, M
   Long, CN
AF Boers, R.
   de Haij, M. J.
   Wauben, W. M. F.
   Baltink, H. Klein
   van Ulft, L. H.
   Savenije, M.
   Long, C. N.
TI Optimized fractional cloudiness determination from five ground-based
   remote sensing techniques
SO JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES
LA English
DT Article
ID SKY COVER
AB A 1 year record of fractional cloudiness at 10 min intervals was generated for the Cabauw Experimental Site for Atmospheric Research (CESAR) (51 degrees 58'N, 4 degrees 55'E) using an integrated assessment of five different observational methods. The five methods are based on active as well as passive systems and use either a hemispheric or column remote sensing technique. The 1 year instrumental cloudiness data were compared against a 30 year climatology of Observer data in the vicinity of CESAR (1971-2000). In the intermediate 2-6 octa range, most instruments, but especially the column methods, report lower frequency of occurrence of cloudiness than the absolute minimum values from the 30 year Observer climatology. At night, the Observer records fewer clouds in the 1-2 octa range than during the day, while the instrumental techniques registered more clouds. During daytime the Observer also records much more 7 octa cloudiness than the instruments. A reference algorithm was designed to derive a continuous and optimized record of fractional cloudiness. Output from individual instruments were weighted according to the cloud base height reported at the observation time; the larger the height, the lower the weight. The algorithm was able to provide fractional cloudiness observations every 10 min for 99.92% of the total period of 12 months (15 May 2008 to 14 May 2009).
C1 [Boers, R.; de Haij, M. J.; Wauben, W. M. F.; Baltink, H. Klein; van Ulft, L. H.; Savenije, M.] Royal Netherlands Meteorol Inst, NL-3730 AE De Bilt, Netherlands.
   [Long, C. N.] US DOE, Pacific NW Natl Lab, Richland, WA 99352 USA.
RP Boers, R (reprint author), Royal Netherlands Meteorol Inst, POB 201, NL-3730 AE De Bilt, Netherlands.
EM reinout.boers@knmi.nl
FU Climate Change Research Division of the U.S. Department of Energy
FX The Raman lidar data were kindly provided to us by A. Apituley from
   RIVM, Netherlands, who operates this system at CESAR. C.N. Long
   acknowledges the support of the Climate Change Research Division of the
   U.S. Department of Energy as part of the Atmospheric System Research
   (ASR) Program.
NR 23
TC 16
Z9 16
U1 0
U2 2
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-897X
EI 2169-8996
J9 J GEOPHYS RES-ATMOS
JI J. Geophys. Res.-Atmos.
PD DEC 23
PY 2010
VL 115
AR D24116
DI 10.1029/2010JD014661
PG 16
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA 699CT
UT WOS:000285642200007
ER

PT J
AU Stevens, WR
   Ruscic, B
   Baer, T
AF Stevens, William R.
   Ruscic, Branko
   Baer, Tomas
TI Heats of Formation of C6H5 center dot, C6H5+, and C6H5NO by Threshold
   Photoelectron Photoion Coincidence and Active Thermochemical Tables
   Analysis
SO JOURNAL OF PHYSICAL CHEMISTRY A
LA English
DT Article
ID BOND-DISSOCIATION ENERGIES; LOWER ELECTRONIC STATES; SET MODEL
   CHEMISTRY; DENSITY-FUNCTIONAL GEOMETRIES; UNIMOLECULAR DECAY-RATES;
   HIGH-PRESSURE PYROLYSIS; DEPENDENT MASS-SPECTRA; ZERO-POINT ENERGIES;
   DER-WAALS COMPLEXES; IONIZATION-POTENTIALS
AB Threshold photoelectron photoion coincidence has been used to prepare selected internal energy distributions of nitrosobenzene ions [C6H5NO+]. Dissociation to C6H5+ + NO products was measured over a range of internal energies and rate constants from 10(3) to 10(7) s(-1) and fitted with the statistical theory of unimolecular decay. A 0 K dissociative photoionization onset energy of 10.607 +/- 0.020 eV was derived by using the simplified statistical adiabatic channel model. The thermochemical network of Active Thermochemical Tables (ATcT) was expanded to include phenyl and phenylium, as well as nitrosobenzene. The current ATcT heats of formation of these three species at 0 K (298.15 K) are 350.6 (337.3) +/- 0.6, 1148.7 (1136.8) +/- 1.0, and 215.6 (198.6) +/- 1.5 kJ mol(-1), respectively. The resulting adiabatic ionization energy of phenyl is 8.272 +/- 0.010 eV. The new ATcT thermochemistry for phenyl entails a 0 K (298.15 K) C-H bond dissociation enthalpy of benzene of 465.9 (472.1) +/- 0.6 kJ mol(-1). Several related thermochemical quantities from ATcT, including the current enthalpies of formation of benzene, monohalobenzenes, and their ions, as well as interim ATcT values for the constituent atoms, are also given.
C1 [Ruscic, Branko] Argonne Natl Lab, Chem Sci & Engn Div, Argonne, IL 60439 USA.
   [Stevens, William R.; Baer, Tomas] Univ N Carolina, Dept Chem, Chapel Hill, NC 27517 USA.
   [Ruscic, Branko] Univ Chicago, Computat Inst, Chicago, IL 60637 USA.
RP Ruscic, B (reprint author), Argonne Natl Lab, Chem Sci & Engn Div, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM ruscic@anl.gov; baer@unc.edu
RI Ruscic, Branko/A-8716-2008
OI Ruscic, Branko/0000-0002-4372-6990
FU U.S. Department of Energy, Office of Basic Energy Sciences, Division of
   Chemical Sciences, Geosciences and Biosciences [DE-ACO2-06CH11357,
   DE-FG02-97ER14776]
FX This work was supported by the U.S. Department of Energy, Office of
   Basic Energy Sciences, Division of Chemical Sciences, Geosciences and
   Biosciences under Contract No. DE-ACO2-06CH11357 (at Argonne National
   Laboratory) and DE-FG02-97ER14776 (at UNC-Chapel Hill). We thank Andras
   Bodi of the Swiss Light Source for help in running the nitrosobenzene
   TPES. Portions of this research are related to the effort of the Task
   Group of the International Union of Pure and Applied Chemistry,
   "Selected Free Radicals and Critical Intermediates: Thermodynamic
   Properties from Theory and Experiment" (IUPAC Project 2003-024-1-100).
NR 141
TC 53
Z9 53
U1 0
U2 16
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1089-5639
J9 J PHYS CHEM A
JI J. Phys. Chem. A
PD DEC 23
PY 2010
VL 114
IS 50
BP 13134
EP 13145
DI 10.1021/jp107561s
PG 12
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 693PR
UT WOS:000285236500024
PM 21128587
ER

PT J
AU Cunsolo, A
   Orecchini, A
   Petrillo, C
   Sacchetti, F
AF Cunsolo, Alessandro
   Orecchini, Andrea
   Petrillo, Caterina
   Sacchetti, Francesco
TI Interplay between Microscopic Diffusion and Local Structure of Liquid
   Water
SO JOURNAL OF PHYSICAL CHEMISTRY B
LA English
DT Article
ID ELASTIC NEUTRON-SCATTERING; SUPERCOOLED WATER; LOW-TEMPERATURES;
   RELAXATIONAL DYNAMICS; DENSITY-FLUCTUATIONS; VISCOSITY; PRESSURE;
   BEHAVIOR; GLASS; TRANSITION
AB We present a quasielastic neutron scattering (QENS) study of single-particle dynamics in pure water, measured at temperatures between 256 and 293 K along an isobaric path at 200 MPa. A thorough analysis of the spectral line shapes reveals a departure from simple models of continuous or jump diffusion, with such an effect becoming stronger at lower temperatures. We show that such a diverging trend of dynamical quantities upon cooling closely resembles the divergent (anomalous) compressibility observed in water by small-angle diffraction. Such an analogy suggests an interesting interplay between single-particle diffusion and structural arrangements in liquid water, both bearing witness of the well-known water anomalies. In particular, a fit of dynamical parameters by a Vogel-Tammann-Fulcher law provides a critical temperature of about 220K, interestingly close to the hypothesized position of the second critical point of water and to the so-called Widom line.
C1 [Cunsolo, Alessandro] Brookhaven Natl Lab, Natl Synchrotron Light Source 2, Upton, NY 11973 USA.
   [Orecchini, Andrea] Inst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France.
   [Orecchini, Andrea; Petrillo, Caterina; Sacchetti, Francesco] Ctr Ric & Sviluppo SOFT, CNR INFM, I-00185 Rome, Italy.
   [Orecchini, Andrea; Petrillo, Caterina; Sacchetti, Francesco] Univ Perugia, Dipartimento Fis, I-06123 Perugia, Italy.
RP Cunsolo, A (reprint author), Brookhaven Natl Lab, Natl Synchrotron Light Source 2, POB 5000, Upton, NY 11973 USA.
RI Cunsolo, Alessandro/C-7617-2013
NR 41
TC 6
Z9 6
U1 0
U2 15
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1520-6106
J9 J PHYS CHEM B
JI J. Phys. Chem. B
PD DEC 23
PY 2010
VL 114
IS 50
BP 16713
EP 16717
DI 10.1021/jp1073768
PG 5
WC Chemistry, Physical
SC Chemistry
GA 693PT
UT WOS:000285236700005
PM 21114328
ER

PT J
AU Mamontov, E
   Faraone, A
   Hagaman, EW
   Han, KS
   Fratini, E
AF Mamontov, E.
   Faraone, A.
   Hagaman, E. W.
   Han, K. S.
   Fratini, E.
TI A Low-Temperature Crossover in Water Dynamics in an Aqueous LiCl
   Solution: Diffusion Probed by Neutron Spin-Echo and Nuclear Magnetic
   Resonance
SO JOURNAL OF PHYSICAL CHEMISTRY B
LA English
DT Article
ID STOKES-EINSTEIN RELATION; CONFINED WATER; SUPERCOOLED WATER;
   MOLECULAR-DYNAMICS; SILICA MATRICES; HYDRATION WATER; LIQUID WATER;
   SCATTERING; TRANSITION; SPECTROSCOPY
AB Aqueous solutions of lithium chloride are an excellent model system for studying the dynamics of water molecules down to low temperatures without freezing. The apparent dynamic crossover observed in an aqueous solution of LiCl at about 220 to 225 K [Mamontov, JPCB 2009, 113, 14073] is located practically at the same temperature as the crossover found for pure water confined in small hydrophilic pores. This finding suggests a strong similarity of water behavior in these two types of systems. At the same time, studies of solutions allow more effective explorations of the long-range diffusion dynamics, because the water molecules are not confined inside an impenetrable matrix. In contrast to the earlier incoherent quasielastic neutron scattering results obtained for the scattering momentum transfers of 0.3 angstrom(-1) <= Q <= 0.9 angstrom(-1), our present incoherent neutron spin-echo measurements at a lower Q of 0.1 angstrom(-1) exhibit no apparent crossover in the relaxation times down to 200 K. At the same time, our present nuclear magnetic resonance measurements of the diffusion coefficients clearly show a deviation at the lower temperatures from the non-Arrhenius law obtained at the higher temperatures. Our results are consistent with a scenario in which more than one relaxational component may exist below the temperature of the dynamic crossover in water.
C1 [Mamontov, E.] Oak Ridge Natl Lab, Neutron Scattering Sci Div, Oak Ridge, TN 37831 USA.
   [Faraone, A.] Natl Inst Stand & Technol, Ctr Neutron Res, Gaithersburg, MD 20899 USA.
   [Faraone, A.] Univ Maryland, Dept Mat Sci & Engn, College Pk, MD 20742 USA.
   [Hagaman, E. W.; Han, K. S.] Oak Ridge Natl Lab, Div Chem Sci, Oak Ridge, TN 37831 USA.
   [Fratini, E.] Univ Florence, Dept Chem, I-50019 Florence, Italy.
   [Fratini, E.] Univ Florence, CSGI, I-50019 Florence, Italy.
RP Mamontov, E (reprint author), Oak Ridge Natl Lab, Neutron Scattering Sci Div, Oak Ridge, TN 37831 USA.
EM mamontove@ornl.gov
RI Fratini, Emiliano/C-9983-2010; Mamontov, Eugene/Q-1003-2015; 
OI Fratini, Emiliano/0000-0001-7104-6530; Mamontov,
   Eugene/0000-0002-5684-2675; Han, Kee Sung/0000-0002-3535-1818
FU U.S. Department of Energy; Division of Chemical Sciences, Geosciences,
   and Biosciences, Office of Basic Energy Sciences, U.S. Department of
   Energy; National Science Foundation [DMR-0454672]; CSGI; MIUR
FX A part of this research performed at the Oak Ridge National Laboratory
   was supported by the U.S. Department of Energy. The work at the Chemical
   Sciences Division of the ORNL was sponsored by the Division of Chemical
   Sciences, Geosciences, and Biosciences, Office of Basic Energy Sciences,
   U.S. Department of Energy. We are thankful to A. P. Sokolov for valuable
   discussion. This work utilized facilities supported in part by the
   National Science Foundation under Agreement No. DMR-0454672. E. Fratini
   kindly acknowledges financial support from CSGI and MIUR.
NR 56
TC 19
Z9 19
U1 2
U2 18
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1520-6106
J9 J PHYS CHEM B
JI J. Phys. Chem. B
PD DEC 23
PY 2010
VL 114
IS 50
BP 16737
EP 16743
DI 10.1021/jp108497b
PG 7
WC Chemistry, Physical
SC Chemistry
GA 693PT
UT WOS:000285236700009
PM 21117619
ER

PT J
AU Gilbert, B
   Katz, JE
   Denlinger, JD
   Yin, YD
   Falcone, R
   Waychunas, GA
AF Gilbert, Benjamin
   Katz, Jordan E.
   Denlinger, Jonathan D.
   Yin, Yadong
   Falcone, Roger
   Waychunas, Glenn A.
TI Soft X-ray Spectroscopy Study of the Electronic Structure of Oxidized
   and Partially Oxidized Magnetite Nanoparticles
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID OXYGEN K-EDGE; IRON-OXIDES; ABSORPTION SPECTROSCOPY; VERWEY TRANSITION;
   NANOCRYSTALS; OXIDATION; GAMMA-FE2O3; SCATTERING; NANOSCALE; MINERALS
AB The crystal structure of magnetite nanoparticles may be transformed to maghemite by complete oxidation, but under many relevant conditions the oxidation is partial, creating a mixed-valence material with structural and electronic properties that are poorly characterized. We used X-ray diffraction, Fe K-edge extended X-ray absorption fine structure (EXAFS) spectroscopy, and soft X-ray absorption and emission spectroscopy to characterize the products of oxidizing uncoated and oleic acid-coated magnetite nanoparticles in air. The oxidization of uncoated magnetite nanoparticles creates a material that is structurally and electronically indistinguishable from maghemite. By contrast, while oxidized oleic acid-coated nanoparticles are also structurally indistinguishable from maghemite, Fe L-edge spectroscopy revealed the presence of interior reduced iron sites even after a 2-year period. We used X-ray emission spectroscopy at the O K-edge to study the valence bands (VB) of the iron oxide nanoparticles, using resonant excitation to remove the contributions from oxygen atoms in the ligands and from low-energy excitations that obscured the VB edge. The bonding in all nanoparticles was typical of maghemite, with no detectable VB states introduced by the long-lived, reduced-iron sites in the oleic acid-coated sample. However, O K-edge absorption spectroscopy observed a similar to 0.2 eV shift in the position of the lowest unoccupied states in the coated sample, indicating an increase in the semiconductor band gap relative to bulk stoichiometric maghemite that was also observed by optical absorption spectroscopy. The results show that the ferrous iron sites within ferric iron oxide nanoparticles coated by an organic ligand can persist under ambient conditions with no evidence of a distinct interior phase and can exert an effect on the global electronic and optical properties of the material. This phenomenon resembles the band gap enlargement caused by electron accumulation in the conduction band of TiO(2).
C1 [Gilbert, Benjamin; Katz, Jordan E.; Waychunas, Glenn A.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Earth Sci, Berkeley, CA 94720 USA.
   [Denlinger, Jonathan D.; Falcone, Roger] Univ Calif Berkeley, Lawrence Berkeley Lab, Adv Light Source, Berkeley, CA 94720 USA.
   [Yin, Yadong] Univ Calif Riverside, Dept Chem, Riverside, CA 92521 USA.
RP Gilbert, B (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Earth Sci, Berkeley, CA 94720 USA.
EM BGilbert@lbl.gov
RI Yin, Yadong/D-5987-2011; Gilbert, Benjamin/E-3182-2010; Katz,
   Jordan/J-5599-2016
OI Yin, Yadong/0000-0003-0218-3042; Katz, Jordan/0000-0002-6242-2124
FU Office of Science, Office of Basic Energy Sciences, of the U.S.
   Department of Energy (DOE) [DE-AC02-05CH11231]; Office of Science, of
   the U.S. Department of Energy [DE-AC02-05CH11231]
FX Soft X-ray spectroscopy was performed on beamlines 7 and 8 at the
   Advanced Light Source (ALS), and we thank Pers-Anders Glans and Jinghua
   Guo. X-ray diffraction was performed on beamline 11.3.3 at the ALS, and
   we thank Simon Teat. The ALS is supported by the Director, Office of
   Science, Office of Basic Energy Sciences, of the U.S. Department of
   Energy (DOE) under Contract DE-AC02-05CH11231. Iron K-edge absorption
   spectroscopy was performed at beamline 10-2 at the Stanford Synchrotron
   Radiation Lightsource (SSRL), a national user facility operated by
   Stanford University on behalf of the DOE Office of Basic Energy
   Sciences, and we thank Matthew Lattimer and Allyson Aranda. We thank
   Rebecca Mezler, Pupa Gilbert, and Jinghua Guo for the opportunity to
   acquire Fe L-edge data and Klaus Attenkofer and David Sherman for
   valuable discussions. This work was supported by the Director, Office of
   Science, of the U.S. Department of Energy under Contract
   DE-AC02-05CH11231.
NR 57
TC 23
Z9 23
U1 1
U2 51
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 23
PY 2010
VL 114
IS 50
BP 21994
EP 22001
DI 10.1021/jp106919a
PG 8
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 693PU
UT WOS:000285236800016
ER

PT J
AU Caldwell, MA
   Haynor, B
   Aloni, S
   Ogletree, DF
   Wong, HSP
   Urban, JJ
   Milliron, DJ
AF Caldwell, Marissa A.
   Haynor, Ben
   Aloni, Shaul
   Ogletree, D. Frank
   Wong, H-S. Philip
   Urban, Jeffrey J.
   Milliron, Delia J.
TI Spectroscopic Evidence for Exceptional Thermal Contribution to Electron
   Beam-Induced Fragmentation
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID TEMPERATURE-DEPENDENCE; NANOWIRE GROWTH; BAND-GAPS; CATHODOLUMINESCENCE;
   NANOCRYSTALS; MICROSCOPY; TRANSFORMATION; NANOPARTICLES; IRRADIATION;
   DYNAMICS
AB While electron beam-induced fragmentation (EBIF) has been reported to result in the formation of nanocrystals of various compositions, the physical forces driving this phenomenon are still poorly understood. We report EBIF to be a much more general phenomenon than previously appreciated, operative across a wide variety of metals, semiconductors, and insulators. In addition, we leverage the temperature dependent bandgap of several semiconductors, using in situ cathodoluminescence spectroscopy, to quantify the thermal contribution to EBIF and find extreme temperature rises upward of 1000 K.
C1 [Haynor, Ben; Aloni, Shaul; Ogletree, D. Frank; Urban, Jeffrey J.; Milliron, Delia J.] Univ Calif Berkeley, Lawrence Berkeley Lab, Mol Foundry, Berkeley, CA 94720 USA.
   [Caldwell, Marissa A.; Wong, H-S. Philip] Stanford Univ, Dept Chem, Stanford, CA 94305 USA.
   [Caldwell, Marissa A.; Wong, H-S. Philip] Stanford Univ, Dept Elect Engn, Stanford, CA 94305 USA.
   [Caldwell, Marissa A.; Wong, H-S. Philip] Stanford Univ, Ctr Integrated Syst, Stanford, CA 94305 USA.
RP Urban, JJ (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Mol Foundry, Berkeley, CA 94720 USA.
EM jjurban@lbl.gov; dmilliron@lbl.gov
RI Milliron, Delia/D-6002-2012; Ogletree, D Frank/D-9833-2016
OI Ogletree, D Frank/0000-0002-8159-0182
FU IBM; Non-Volatile Memory Technology Research Initiative (NMTRI) at
   Stanford University; Office of Science, Office of Basic Energy Sciences,
   of the U.S. Department of Energy [DE-AC02-05CH11231]
FX We thank R. Y. Wang for critical discussions. M.A.C. is supported in
   part by the IBM Ph.D. Fellowship. This work was supported in part by the
   member companies of the Non-Volatile Memory Technology Research
   Initiative (NMTRI) at Stanford University. Work at the Molecular Foundry
   was supported by the Office of Science, Office of Basic Energy Sciences,
   of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
NR 34
TC 3
Z9 3
U1 1
U2 3
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 23
PY 2010
VL 114
IS 50
BP 22064
EP 22068
DI 10.1021/jp1078086
PG 5
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 693PU
UT WOS:000285236800025
ER

PT J
AU Xu, P
   Jeon, SH
   Chen, HT
   Luo, HM
   Zou, GF
   Jia, QX
   Anghel, M
   Teuscher, C
   Williams, DJ
   Zhang, B
   Han, XJ
   Wang, HL
AF Xu, Ping
   Jeon, Sea-Ho
   Chen, Hou-Tong
   Luo, Hongmei
   Zou, Guifu
   Jia, Quanxi
   Anghel, Marian
   Teuscher, Christof
   Williams, Darrick J.
   Zhang, Bin
   Han, Xijiang
   Wang, Hsing-Lin
TI Facile Synthesis and Electrical Properties of Silver Wires through
   Chemical Reduction by Polyaniline
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID ENHANCED RAMAN-SCATTERING; CATALYTIC-PROPERTIES; METAL NANOPARTICLES;
   NONVOLATILE MEMORY; GROWTH-MECHANISM; NANOWIRES; DEPOSITION;
   SPECTROSCOPY; GOLD; DEFORMATION
AB We demonstrate here for the first time a facile fabrication of silver wire (SW) structures with a wide range of sizes and morphologies through direct chemical reduction by polyaniline (PANT). The synthesis of SW is mostly determined by the nature of the PANI dopant and silver nitrate concentration. Time-resolved optical microscopy allows monitoring the growth of SWs in real time and reveals the possible growth mechanism. Temperature-dependent resistance of a SW with 150 nm diameter by a four-probe method shows typical resistance behavior of silver metal, and the electrical conductivity is 2.1 x 10(5) S/cm at room temperature. The morphology-dependent electrical properties of these SWs are measured using a two-probe method. The wires comprised of self-assembled silver nanoparticles usually have lower electrical conductivities than those with smooth surfaces, due to the presence of growth defects and enhanced surface scattering. Current voltage (I-V) curve measurements in a wide potential range either break down or cause surface transformation of the SWs by a synergism of electromigration and surface diffusion. A SW network that shows surface transformation after I-V curve measurement displays a higher resistance. The study of the electrical stability of the SWs opens up a new view of the applicable feasibility of metal nanowires in nanoelectronic devices.
C1 [Xu, Ping; Jeon, Sea-Ho; Chen, Hou-Tong; Zou, Guifu; Jia, Quanxi; Anghel, Marian; Williams, Darrick J.; Wang, Hsing-Lin] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Xu, Ping; Zhang, Bin; Han, Xijiang] Harbin Inst Technol, Dept Chem, Harbin 150001, Peoples R China.
   [Luo, Hongmei] New Mexico State Univ, Dept Chem Engn, Las Cruces, NM 88003 USA.
   [Teuscher, Christof] Portland State Univ, Dept Elect & Comp Engn, Portland, OR 97201 USA.
RP Xu, P (reprint author), Los Alamos Natl Lab, POB 1663, Los Alamos, NM 87545 USA.
EM pxu@hit.edu.cn; hwang@lanl.gov
RI Chen, Hou-Tong/C-6860-2009; ZOU, GUIFU/C-8498-2011; Xu,
   Ping/I-1910-2013; Jia, Q. X./C-5194-2008
OI Chen, Hou-Tong/0000-0003-2014-7571; Xu, Ping/0000-0002-1516-4986; 
FU DOE; BES Office of Science; National Nanotechnology Enterprise
   Development Center (NNEDC); U.S. Department of Energy, Center for
   Integrated Nanotechnologies, at Los Alamos National Laboratory
   [DE-AC52-06NA25396]; Sandia National Laboratories [DE-AC04-94AL85000];
   Chinese Scholarship Council (CSC), NSF of China [20776032, 21071037];
   Harbin Technological Innovation [2010RFXXG012]
FX H.-L.W. acknowledges the financial support from Laboratory Directed
   Research and Development (LDRD) fund under the auspices of DOE, BES
   Office of Science, and the National Nanotechnology Enterprise
   Development Center (NNEDC). This work was performed in part at the U.S.
   Department of Energy, Center for Integrated Nanotechnologies, at Los
   Alamos National Laboratory (Contract DE-AC52-06NA25396) and Sandia
   National Laboratories (Contract DE-AC04-94AL85000). P.X. is thankful for
   the support from the Joint Educational Ph.D. Program of Chinese
   Scholarship Council (CSC), NSF of China (No. 20776032, 21071037), and
   Special Fund of Harbin Technological Innovation (2010RFXXG012).
NR 49
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Z9 26
U1 1
U2 34
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
EI 1932-7455
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 23
PY 2010
VL 114
IS 50
BP 22147
EP 22154
DI 10.1021/jp109207d
PG 8
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 693PU
UT WOS:000285236800036
ER

PT J
AU Rance, WL
   Rupert, BL
   Mitchell, WJ
   Kose, ME
   Ginley, DS
   Shaheen, SE
   Rumbles, G
   Kopidakis, N
AF Rance, William L.
   Rupert, Benjamin L.
   Mitchell, William J.
   Koese, Muhammet E.
   Ginley, David S.
   Shaheen, Sean E.
   Rumbles, Garry
   Kopidakis, Nikos
TI Conjugated Thiophene Dendrimer with an Electron-Withdrawing Core and
   Electron-Rich Dendrons: How the Molecular Structure Affects the
   Morphology and Performance of Dendrimer:Fullerene Photovoltaic Devices
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID HETEROJUNCTION SOLAR-CELLS; CONVERSION EFFICIENCY; CHARGE-CARRIERS;
   POLY(3-HEXYLTHIOPHENE); MOBILITY; POLYMER; FILMS; OLIGOTHIOPHENES;
   SEPARATION; KINETICS
AB The combination of electron-rich and electron-poor moieties in conjugated molecules is frequently utilized in order to red shift the absorption spectrum and improve photon harvesting in bulk heterojunction photovoltaic devices. In this study we characterize a conjugated thiophene dendrimer that has an electron-withdrawing core and electron-rich dendrons in order to investigate the effects of this design approach on the salient properties that influence the performance of photovoltaic devices with this dendrimer donor. Beside the absorption onset, these properties are the morphology of dendrimer:fullerene films and the dynamics of photoinduced carrier generation and loss. For comparison we also characterize a control dendrimer with the same structure but without the electron-withdrawing core. In addition to lowering the band gap by ca. 0.5 eV, the electron-withdrawing core also planarizes the dendrimer resulting in enhanced order in bulk heterojunction films. We observe longer photocarrier lifetimes in this ordered structure compared to the films of the predominantly amorphous control. The characterization of dendrimer:fullerene bulk heterojunction photovoltaic devices shows no voltage loss despite the decreased absorption onset. The properties of the device are consistent with the improved photocarrier lifetimes, but they are limited by a low short-circuit photocurrent density. We attribute this to electron confinement in the core that hinders transfer to the fullerene acceptor.
C1 [Rance, William L.] Colorado Sch Mines, Dept Phys, Golden, CO 80401 USA.
   [Rupert, Benjamin L.; Mitchell, William J.; Ginley, David S.; Rumbles, Garry; Kopidakis, Nikos] Natl Renewable Energy Lab, Golden, CO 80401 USA.
   [Koese, Muhammet E.] N Dakota State Univ, Dept Chem & Biochem, Fargo, ND 58108 USA.
   [Shaheen, Sean E.] Univ Denver, Dept Phys & Astron, Denver, CO 80208 USA.
RP Rance, WL (reprint author), Colorado Sch Mines, Dept Phys, 1500 Illinois St, Golden, CO 80401 USA.
EM wrance@mines.edu; nikos.kopidakis@nrel.gov
RI Rupert, Benjamin/E-1694-2011; Kose, Muhammet/C-7167-2012; Shaheen,
   Sean/M-7893-2013; Rumbles, Garry/A-3045-2014; Kopidakis,
   Nikos/N-4777-2015; 
OI Rumbles, Garry/0000-0003-0776-1462
FU U.S. Department of Energy [DE-AC36-08GO28308]; NREL; Division of
   Chemical Sciences, Geosciences, and Biosciences, Office of Basic Energy
   Sciences of the U.S. Department of Energ
FX This work was supported by the U.S. Department of Energy's Solar Energy
   Technologies Program under Contract No. DE-AC36-08GO28308 with NREL.
   G.R. gratefully acknowledges the Division of Chemical Sciences,
   Geosciences, and Biosciences, Office of Basic Energy Sciences of the
   U.S. Department of Energy for funding the development of the transient
   microwave conductivity measurement.
NR 34
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PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 23
PY 2010
VL 114
IS 50
BP 22269
EP 22276
DI 10.1021/jp106850f
PG 8
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 693PU
UT WOS:000285236800052
ER

PT J
AU Marois, C
   Zuckerman, B
   Konopacky, QM
   Macintosh, B
   Barman, T
AF Marois, Christian
   Zuckerman, B.
   Konopacky, Quinn M.
   Macintosh, Bruce
   Barman, Travis
TI Images of a fourth planet orbiting HR 8799
SO NATURE
LA English
DT Article
ID EXTRASOLAR GIANT PLANETS; DEBRIS DISK; BROWN DWARFS; SYSTEM;
   SPECTROSCOPY; STARS; LUMINOSITY
AB High-contrast near-infrared imaging of the nearby star HR 8799 has shown three giant planets(1). Such images were possible because of the wide orbits (>25 astronomical units, where 1 AU is the Earth-Sun distance) and youth (<100 Myr) of the imaged planets, which are still hot and bright as they radiate away gravitational energy acquired during their formation. An important area of contention in the exoplanet community is whether outer planets (>10 AU) more massive than Jupiter form by way of one-step gravitational instabilities(2) or, rather, through a two-step process involving accretion of a core followed by accumulation of a massive outer envelope composed primarily of hydrogen and helium(3). Here we report the presence of a fourth planet, interior to and of about the same mass as the other three. The system, with this additional planet, represents a challenge for current planet formation models as none of them can explain the in situ formation of all four planets. With its four young giant planets and known cold/warm debris belts(4), the HR 8799 planetary system is a unique laboratory in which to study the formation and evolution of giant planets at wide (>10 AU) separations.
C1 [Marois, Christian] Natl Res Council Canada, Herzberg Inst Astrophys, Victoria, BC V9E 2E7, Canada.
   [Zuckerman, B.] Univ Calif Los Angeles, Dept Phys & Astron, Los Angeles, CA 90095 USA.
   [Konopacky, Quinn M.; Macintosh, Bruce] Lawrence Livermore Natl Lab, Livermore, CA 94550 USA.
   [Barman, Travis] Lowell Observ, Flagstaff, AZ 86001 USA.
RP Marois, C (reprint author), Natl Res Council Canada, Herzberg Inst Astrophys, 5071 W Saanich Rd, Victoria, BC V9E 2E7, Canada.
EM christian.marois@nrc-cnrc.gc.ca
FU US Department of Energy by LLNL; NSF Center for Adaptive Optics; NASA
FX We thank the Keck staff, particularly H. Lewis, B. Goodrich and J. Lyke,
   for support with the follow-up observations. We thank G. Laughlin and D.
   C. Fabrycky for discussions. Portions of this research were performed
   under the auspices of the US Department of Energy by LLNL and also
   supported in part by the NSF Center for Adaptive Optics. We acknowledge
   support by NASA grants to UCLA, LLNL and Lowell Observatory. The data
   were obtained at the W. M. Keck Observatory. This publication makes use
   of data products from the Two Micron All Sky Survey and the SIMBAD
   database.
NR 30
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U2 22
PU NATURE PUBLISHING GROUP
PI LONDON
PA MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
SN 0028-0836
J9 NATURE
JI Nature
PD DEC 23
PY 2010
VL 468
IS 7327
BP 1080
EP 1083
DI 10.1038/nature09684
PG 4
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 697XT
UT WOS:000285553800053
PM 21150902
ER

PT J
AU Pelka, A
   Gregori, G
   Gericke, DO
   Vorberger, J
   Glenzer, SH
   Gunther, MM
   Harres, K
   Heathcote, R
   Kritcher, AL
   Kugland, NL
   Li, B
   Makita, M
   Mithen, J
   Neely, D
   Niemann, C
   Otten, A
   Riley, D
   Schaumann, G
   Schollmeier, M
   Tauschwitz, A
   Roth, M
AF Pelka, A.
   Gregori, G.
   Gericke, D. O.
   Vorberger, J.
   Glenzer, S. H.
   Guenther, M. M.
   Harres, K.
   Heathcote, R.
   Kritcher, A. L.
   Kugland, N. L.
   Li, B.
   Makita, M.
   Mithen, J.
   Neely, D.
   Niemann, C.
   Otten, A.
   Riley, D.
   Schaumann, G.
   Schollmeier, M.
   Tauschwitz, An.
   Roth, M.
TI Ultrafast Melting of Carbon Induced by Intense Proton Beams
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID RAY THOMSON SCATTERING; LIQUID-PHASE; PLASMAS; SOLIDS; URANUS
AB Laser-produced proton beams have been used to achieve ultrafast volumetric heating of carbon samples at solid density. The isochoric melting of carbon was probed by a scattering of x rays from a secondary laser-produced plasma. From the scattering signal, we have deduced the fraction of the material that was melted by the inhomogeneous heating. The results are compared to different theoretical approaches for the equation of state which suggests modifications from standard models.
C1 [Pelka, A.; Guenther, M. M.; Harres, K.; Otten, A.; Schaumann, G.; Schollmeier, M.; Roth, M.] Tech Univ Darmstadt, IKP, D-64289 Darmstadt, Germany.
   [Gregori, G.; Mithen, J.] Univ Oxford, Dept Phys, Oxford OX1 3PU, England.
   [Gregori, G.; Heathcote, R.; Li, B.; Neely, D.] Rutherford Appleton Lab, Cent Laser Facil, Didcot OX11 0QX, Oxon, England.
   [Gericke, D. O.; Vorberger, J.] Univ Warwick, Dept Phys, Ctr Fus Space & Astrophys, Coventry CV4 7AL, W Midlands, England.
   [Glenzer, S. H.; Kritcher, A. L.; Kugland, N. L.; Niemann, C.] Lawrence Livermore Natl Lab, Livermore, CA 94550 USA.
   [Kugland, N. L.; Niemann, C.] Univ Calif Los Angeles, Dept Phys, Los Angeles, CA 94550 USA.
   [Makita, M.; Riley, D.] Queens Univ Belfast, Dept Phys & Astron, Belfast BT7 1NN, Antrim, North Ireland.
   [Schollmeier, M.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
   [Tauschwitz, An.] Goethe Univ Frankfurt, D-60438 Frankfurt, Germany.
RP Pelka, A (reprint author), Tech Univ Darmstadt, IKP, Schlossgartenstr 9, D-64289 Darmstadt, Germany.
RI Schollmeier, Marius/H-1056-2012; Vorberger, Jan/D-9162-2015
OI Schollmeier, Marius/0000-0002-0683-022X; 
FU BMBF [06DA9043I, 06DA9044I, 05KS7SJ1]; STFC; John Fell Fund; EPSRC
   [EP/G007187/1, EP/D062837, EP/C001869/1]; LDRD [08-ERI-002]; U.S.
   Department of Energy by the Lawrence Livermore National Laboratory
   [DE-AC52-07NA27344]; U.S. DOE [DE-AC04-94AL85000]
FX We thank the CLF staff at RAL for their assistance. The work of A. P.,
   M. M. G., K. H., A. O., M. S., and M. R. was supported by the BMBF,
   support codes 06DA9043I, 06DA9044I, and 05KS7SJ1. The work of G. G., and
   B. L. was partially supported by the STFC. The work of J. M. was
   supported by the John Fell Fund. Support from EPSRC grants is
   acknowledged by G. G. (EP/G007187/1), D. G., J. V. (EP/D062837), and D.
   R., M. M. (EP/C001869/1). The work of N. L. K., A. L. K., and S. H. G.
   was supported by LDRD Grant No. 08-ERI-002 and was performed under the
   auspices of the U.S. Department of Energy by the Lawrence Livermore
   National Laboratory under Contract No. DE-AC52-07NA27344. We also
   acknowledge support from the LLNL Lawrence Scholar Program. Sandia is
   operated by Lockheed Martin Corp. for the U.S. DOE (Contract No.
   DE-AC04-94AL85000).
NR 32
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U1 0
U2 17
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 23
PY 2010
VL 105
IS 26
AR 265701
DI 10.1103/PhysRevLett.105.265701
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713UC
UT WOS:000286761900007
PM 21231678
ER

PT J
AU Gerstein, MB
   Lu, ZJ
   Van Nostrand, EL
   Cheng, C
   Arshinoff, BI
   Liu, T
   Yip, KY
   Robilotto, R
   Rechtsteiner, A
   Ikegami, K
   Alves, P
   Chateigner, A
   Perry, M
   Morris, M
   Auerbach, RK
   Feng, X
   Leng, J
   Vielle, A
   Niu, W
   Rhrissorrakrai, K
   Agarwal, A
   Alexander, RP
   Barber, G
   Brdlik, CM
   Brennan, J
   Brouillet, JJ
   Carr, A
   Cheung, MS
   Clawson, H
   Contrino, S
   Dannenberg, LO
   Dernburg, AF
   Desai, A
   Dick, L
   Dose, AC
   Du, JA
   Egelhofer, T
   Ercan, S
   Euskirchen, G
   Ewing, B
   Feingold, EA
   Gassmann, R
   Good, PJ
   Green, P
   Gullier, F
   Gutwein, M
   Guyer, MS
   Habegger, L
   Han, T
   Henikoff, JG
   Henz, SR
   Hinrichs, A
   Holster, H
   Hyman, T
   Iniguez, AL
   Janette, J
   Jensen, M
   Kato, M
   Kent, WJ
   Kephart, E
   Khivansara, V
   Khurana, E
   Kim, JK
   Kolasinska-Zwierz, P
   Lai, EC
   Latorre, I
   Leahey, A
   Lewis, S
   Lloyd, P
   Lochovsky, L
   Lowdon, RF
   Lubling, Y
   Lyne, R
   MacCoss, M
   Mackowiak, SD
   Mangone, M
   Mckay, S
   Mecenas, D
   Merrihew, G
   Miller, DM
   Muroyama, A
   Murray, JI
   Ooi, SL
   Pham, H
   Phippen, T
   Preston, EA
   Rajewsky, N
   Ratsch, G
   Rosenbaum, H
   Rozowsky, J
   Rutherford, K
   Ruzanov, P
   Sarov, M
   Sasidharan, R
   Sboner, A
   Scheid, P
   Segal, E
   Shin, HJ
   Shou, C
   Slack, FJ
   Slightam, C
   Smith, R
   Spencer, WC
   Stinson, EO
   Taing, S
   Takasaki, T
   Vafeados, D
   Voronina, K
   Wang, GL
   Washington, NL
   Whittle, CM
   Wu, BJ
   Yan, KK
   Zeller, G
   Zha, Z
   Zhong, M
   Zhou, XL
   Ahringer, J
   Strome, S
   Gunsalus, KC
   Micklem, G
   Liu, XS
   Reinke, V
   Kim, SK
   Hillier, LW
   Henikoff, S
   Piano, F
   Snyder, M
   Stein, L
   Lieb, JD
   Waterston, RH
AF Gerstein, Mark B.
   Lu, Zhi John
   Van Nostrand, Eric L.
   Cheng, Chao
   Arshinoff, Bradley I.
   Liu, Tao
   Yip, Kevin Y.
   Robilotto, Rebecca
   Rechtsteiner, Andreas
   Ikegami, Kohta
   Alves, Pedro
   Chateigner, Aurelien
   Perry, Marc
   Morris, Mitzi
   Auerbach, Raymond K.
   Feng, Xin
   Leng, Jing
   Vielle, Anne
   Niu, Wei
   Rhrissorrakrai, Kahn
   Agarwal, Ashish
   Alexander, Roger P.
   Barber, Galt
   Brdlik, Cathleen M.
   Brennan, Jennifer
   Brouillet, Jeremy Jean
   Carr, Adrian
   Cheung, Ming-Sin
   Clawson, Hiram
   Contrino, Sergio
   Dannenberg, Luke O.
   Dernburg, Abby F.
   Desai, Arshad
   Dick, Lindsay
   Dose, Andrea C.
   Du, Jiang
   Egelhofer, Thea
   Ercan, Sevinc
   Euskirchen, Ghia
   Ewing, Brent
   Feingold, Elise A.
   Gassmann, Reto
   Good, Peter J.
   Green, Phil
   Gullier, Francois
   Gutwein, Michelle
   Guyer, Mark S.
   Habegger, Lukas
   Han, Ting
   Henikoff, Jorja G.
   Henz, Stefan R.
   Hinrichs, Angie
   Holster, Heather
   Hyman, Tony
   Iniguez, A. Leo
   Janette, Judith
   Jensen, Morten
   Kato, Masaomi
   Kent, W. James
   Kephart, Ellen
   Khivansara, Vishal
   Khurana, Ekta
   Kim, John K.
   Kolasinska-Zwierz, Paulina
   Lai, Eric C.
   Latorre, Isabel
   Leahey, Amber
   Lewis, Suzanna
   Lloyd, Paul
   Lochovsky, Lucas
   Lowdon, Rebecca F.
   Lubling, Yaniv
   Lyne, Rachel
   MacCoss, Michael
   Mackowiak, Sebastian D.
   Mangone, Marco
   Mckay, Sheldon
   Mecenas, Desirea
   Merrihew, Gennifer
   Miller, David M., III
   Muroyama, Andrew
   Murray, John I.
   Ooi, Siew-Loon
   Pham, Hoang
   Phippen, Taryn
   Preston, Elicia A.
   Rajewsky, Nikolaus
   Raetsch, Gunnar
   Rosenbaum, Heidi
   Rozowsky, Joel
   Rutherford, Kim
   Ruzanov, Peter
   Sarov, Mihail
   Sasidharan, Rajkumar
   Sboner, Andrea
   Scheid, Paul
   Segal, Eran
   Shin, Hyunjin
   Shou, Chong
   Slack, Frank J.
   Slightam, Cindie
   Smith, Richard
   Spencer, William C.
   Stinson, E. O.
   Taing, Scott
   Takasaki, Teruaki
   Vafeados, Dionne
   Voronina, Ksenia
   Wang, Guilin
   Washington, Nicole L.
   Whittle, Christina M.
   Wu, Beijing
   Yan, Koon-Kiu
   Zeller, Georg
   Zha, Zheng
   Zhong, Mei
   Zhou, Xingliang
   Ahringer, Julie
   Strome, Susan
   Gunsalus, Kristin C.
   Micklem, Gos
   Liu, X. Shirley
   Reinke, Valerie
   Kim, Stuart K.
   Hillier, LaDeana W.
   Henikoff, Steven
   Piano, Fabio
   Snyder, Michael
   Stein, Lincoln
   Lieb, Jason D.
   Waterston, Robert H.
CA modENCODE Consortium
TI Integrative Analysis of the Caenorhabditis elegans Genome by the
   modENCODE Project
SO SCIENCE
LA English
DT Article
ID C. ELEGANS; NUCLEOSOME ORGANIZATION; TRANSCRIPTION FACTORS; RNA-SEQ;
   REVEALS; EXPRESSION; EMBRYOS; NETWORK; DNA; CHROMATIN
AB We systematically generated large-scale data sets to improve genome annotation for the nematode Caenorhabditis elegans, a key model organism. These data sets include transcriptome profiling across a developmental time course, genome-wide identification of transcription factor-binding sites, and maps of chromatin organization. From this, we created more complete and accurate gene models, including alternative splice forms and candidate noncoding RNAs. We constructed hierarchical networks of transcription factor-binding and microRNA interactions and discovered chromosomal locations bound by an unusually large number of transcription factors. Different patterns of chromatin composition and histone modification were revealed between chromosome arms and centers, with similarly prominent differences between autosomes and the X chromosome. Integrating data types, we built statistical models relating chromatin, transcription factor binding, and gene expression. Overall, our analyses ascribed putative functions to most of the conserved genome.
C1 [Gerstein, Mark B.; Lu, Zhi John; Cheng, Chao; Yip, Kevin Y.; Robilotto, Rebecca; Alves, Pedro; Auerbach, Raymond K.; Leng, Jing; Alexander, Roger P.; Habegger, Lukas; Lochovsky, Lucas; Rozowsky, Joel; Sboner, Andrea; Shou, Chong; Yan, Koon-Kiu] Yale Univ, Program Computat Biol & Bioinformat, New Haven, CT 06520 USA.
   [Gerstein, Mark B.; Lu, Zhi John; Cheng, Chao; Yip, Kevin Y.; Agarwal, Ashish; Alexander, Roger P.; Rozowsky, Joel; Sasidharan, Rajkumar; Sboner, Andrea; Yan, Koon-Kiu] Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA.
   [Gerstein, Mark B.; Agarwal, Ashish; Du, Jiang] Yale Univ, Dept Comp Sci, New Haven, CT 06511 USA.
   [Van Nostrand, Eric L.; Brdlik, Cathleen M.; Brouillet, Jeremy Jean; Kim, Stuart K.; Snyder, Michael] Stanford Univ, Med Ctr, Dept Genet, Stanford, CA 94305 USA.
   [Arshinoff, Bradley I.; Perry, Marc; Feng, Xin; Kephart, Ellen; Lloyd, Paul; Ruzanov, Peter; Zha, Zheng; Stein, Lincoln] Ontario Inst Canc Res, Toronto, ON M5G 0A3, Canada.
   [Arshinoff, Bradley I.; Stein, Lincoln] Univ Toronto, Dept Mol Genet, Toronto, ON M5S 1A1, Canada.
   [Liu, Tao; Shin, Hyunjin; Taing, Scott; Liu, X. Shirley] Dana Farber Canc Inst, Dept Biostat & Computat Biol, Boston, MA 02115 USA.
   [Liu, Tao; Shin, Hyunjin; Liu, X. Shirley] Harvard Univ, Sch Publ Hlth, Dept Biostat, Boston, MA 02115 USA.
   [Ikegami, Kohta; Brennan, Jennifer; Ercan, Sevinc; Jensen, Morten; Whittle, Christina M.; Zhou, Xingliang; Lieb, Jason D.] Univ N Carolina, Dept Biol, Chapel Hill, NC 27599 USA.
   [Ikegami, Kohta; Brennan, Jennifer; Ercan, Sevinc; Jensen, Morten; Whittle, Christina M.; Zhou, Xingliang; Lieb, Jason D.] Univ N Carolina, Carolina Ctr Genome Sci, Chapel Hill, NC 27599 USA.
   [Chateigner, Aurelien; Carr, Adrian; Contrino, Sergio; Gullier, Francois; Lyne, Rachel; Rutherford, Kim; Smith, Richard; Micklem, Gos] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England.
   [Chateigner, Aurelien; Carr, Adrian; Contrino, Sergio; Gullier, Francois; Lyne, Rachel; Rutherford, Kim; Smith, Richard; Micklem, Gos] Cambridge Syst Biol Ctr, Cambridge CB2 1QR, England.
   [Morris, Mitzi; Rhrissorrakrai, Kahn; Gutwein, Michelle; Khurana, Ekta; Mangone, Marco; Mecenas, Desirea; Scheid, Paul; Gunsalus, Kristin C.; Piano, Fabio] NYU, Dept Biol, Ctr Genom & Syst Biol, New York, NY 10003 USA.
   [Vielle, Anne; Cheung, Ming-Sin; Kolasinska-Zwierz, Paulina; Latorre, Isabel; Ahringer, Julie] Univ Cambridge, Wellcome Trust Canc Res UK Gurdon Inst, Cambridge CB2 1QN, England.
   [Niu, Wei; Euskirchen, Ghia; Zhong, Mei; Snyder, Michael] Yale Univ, Dept Mol Cellular & Dev Biol, New Haven, CT 06824 USA.
   [Niu, Wei; Janette, Judith; Wang, Guilin; Reinke, Valerie] Yale Univ, Sch Med, Dept Genet, New Haven, CT 06520 USA.
   Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA.
   [Dannenberg, Luke O.; Holster, Heather; Iniguez, A. Leo; Rosenbaum, Heidi] Roche NimbleGen, Madison, WI 53719 USA.
   [Dernburg, Abby F.; Dose, Andrea C.; Pham, Hoang] Univ Calif Berkeley, Howard Hughes Med Inst, Dept Mol & Cell Biol, Berkeley, CA 94720 USA.
   [Dernburg, Abby F.; Dose, Andrea C.; Pham, Hoang] Lawrence Berkeley Natl Lab, Div Life Sci, Berkeley, CA 94720 USA.
   [Desai, Arshad; Gassmann, Reto; Muroyama, Andrew; Voronina, Ksenia] Univ Calif San Diego, Ludwig Inst Canc Res, Dept Cellular & Mol Med, San Diego, CA 92093 USA.
   [Ewing, Brent; Green, Phil; Leahey, Amber; MacCoss, Michael; Merrihew, Gennifer; Murray, John I.; Preston, Elicia A.; Vafeados, Dionne; Hillier, LaDeana W.; Waterston, Robert H.] Univ Washington, Sch Med, Dept Genome Sci, Seattle, WA 98195 USA.
   [Feingold, Elise A.; Good, Peter J.; Guyer, Mark S.; Lowdon, Rebecca F.] NHGRI, Div Extramural Res, NIH, Bethesda, MD 20892 USA.
   [Feng, Xin] SUNY Stony Brook, Dept Biomed Engn, Stony Brook, NY 11794 USA.
   [Han, Ting; Khivansara, Vishal; Kim, John K.] Univ Michigan, Inst Life Sci, Dept Human Genet, Ann Arbor, MI 48109 USA.
   [Henikoff, Jorja G.; Ooi, Siew-Loon; Henikoff, Steven] Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA.
   [Raetsch, Gunnar; Zeller, Georg] Max Planck Gesell, Friedrich Miescher Lab, D-72076 Tubingen, Germany.
   [Hyman, Tony; Sarov, Mihail] Max Planck Inst Mol Cell Biol & Genet, D-01307 Dresden, Germany.
   [Miller, David M., III; Spencer, William C.] Vanderbilt Univ, Dept Cell & Dev Biol, Nashville, TN 37232 USA.
   [Kato, Masaomi; Slack, Frank J.] Yale Univ, Dept Mol Cellular & Dev Biol, New Haven, CT 06520 USA.
   [Henz, Stefan R.] Max Planck Inst Dev Biol, D-72076 Tubingen, Germany.
   [Lai, Eric C.] Sloan Kettering Inst, New York, NY 10065 USA.
   [Lewis, Suzanna; Stinson, E. O.; Washington, Nicole L.] Lawrence Berkeley Natl Lab, Genom Div, Berkeley, CA 94720 USA.
   [Lubling, Yaniv; Segal, Eran] Weizmann Inst Sci, Dept Comp Sci & Appl Math, IL-76100 Rehovot, Israel.
   [Mackowiak, Sebastian D.; Rajewsky, Nikolaus] Max Delbruck Ctr Mol Med, Div Syst Biol, D-13125 Berlin, Germany.
   [Mckay, Sheldon; Stein, Lincoln] Cold Spring Harbor Lab, Cold Spring Harbor, NY 11542 USA.
   [Slightam, Cindie; Wu, Beijing; Kim, Stuart K.] Stanford Univ, Med Ctr, Dept Dev Biol, Stanford, CA 94305 USA.
   [Zeller, Georg] European Mol Biol Lab, D-69117 Heidelberg, Germany.
   [Gunsalus, Kristin C.; Piano, Fabio] NYU, Abu Dhabi, U Arab Emirates.
   [Dick, Lindsay] Rockefeller Univ, David Rockefeller Grad Program, New York, NY 10065 USA.
RP Gerstein, MB (reprint author), Yale Univ, Program Computat Biol & Bioinformat, Bass 432,266 Whitney Ave, New Haven, CT 06520 USA.
EM modencode.worm.pi@gersteinlab.org
RI Alexander, Roger/A-8643-2008; NUI, WEI/B-8300-2011; Gassmann,
   Reto/M-6488-2013; Liu, Tao/G-3585-2010; Zeller, Georg/M-6484-2013;
   Hyman, Anthony/B-3917-2017; Sboner, Andrea/C-6487-2008; Spencer,
   William/E-8529-2010; yu, yan/C-2322-2012; Khurana, Ekta/C-4933-2013;
   Yan, Koon-Kiu/A-5940-2009; 
OI Alexander, Roger/0000-0002-2967-7395; Gassmann,
   Reto/0000-0002-0360-2977; Liu, Tao/0000-0002-8818-8313; Zeller,
   Georg/0000-0003-1429-7485; Hyman, Anthony/0000-0003-3664-154X; McKay,
   Sheldon/0000-0002-4011-3160; Sboner, Andrea/0000-0001-6915-3070;
   Rutherford, Kim/0000-0001-6277-726X; Micklem, Gos/0000-0002-6883-6168;
   Lewis, Suzanna/0000-0002-8343-612X; Liu, Tao/0000-0003-0446-9001; Lloyd,
   Paul/0000-0003-3508-5553; Segal, Eran/0000-0002-6859-1164; Hinrichs,
   Angie/0000-0002-1697-1130; Slack, Frank/0000-0001-8263-0409; Rozowsky,
   Joel/0000-0002-3565-0762; Dernburg, Abby/0000-0001-8037-1079; Mangone,
   Marco/0000-0001-7551-8793; Latorre, Isabel/0000-0003-0638-1783
FU NHGRI of the NIH [R01GM088565]; Muscular Dystrophy Association; Pew
   Charitable Trusts; Helmholtz-Alliance on Systems Biology (Max Delbruck
   Centrum Systems Biology Network); Wellcome Trust; William H. Gates III
   Endowed Chair of Biomedical Sciences
FX Funding for this work came from the NHGRI of the NIH as part of the
   modENCODE project, NIH (grant R01GM088565), Muscular Dystrophy
   Association, and the Pew Charitable Trusts (J.K.K.); the
   Helmholtz-Alliance on Systems Biology (Max Delbruck Centrum Systems
   Biology Network) (S.D.M.); the Wellcome Trust (J.A.); the William H.
   Gates III Endowed Chair of Biomedical Sciences (R.H.W.); and the A. L.
   Williams Professorship (M.B.G.). M. Snyder has an advisory role with
   DNANexus, a DNA sequence storage and analysis company. Transfer of
   GFP-tagged fosmids requires a Materials Transfer Agreement with the Max
   Planck Institute of Molecular Cell Biology and Genetics. Raw microarray
   data are available from the Gene Expression Omnibus archive, and raw
   sequencing data are available from the SRA archive (accessions are in
   table S18). We appreciate help from S. Anthony, K. Bell, C. Davis, C.
   Dieterich, Y. Field, A. S. Hammonds, J. Jo, N. Kaplan, A. Manrai, B.
   Mathey-Prevot, R. McWhirter, S. Mohr, S. Von Stetina, J. Watson, K.
   Watkins, C. Xue, and Y. Zhang, and B. Carpenter. We thank C. Jan and D.
   Bartel for sharing data on poly(A) sites before publication, WormBase
   curator G. Williams for assistance in quality checking and preparing the
   transcriptomics data sets for publication, as well as his fellow curator
   P. Davis for reviewing and hand-checking the list of pseudogenes.
NR 76
TC 458
Z9 462
U1 6
U2 90
PU AMER ASSOC ADVANCEMENT SCIENCE
PI WASHINGTON
PA 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA
SN 0036-8075
EI 1095-9203
J9 SCIENCE
JI Science
PD DEC 23
PY 2010
VL 330
IS 6012
BP 1775
EP 1787
DI 10.1126/science.1196914
PG 13
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 698OS
UT WOS:000285603700031
PM 21177976
ER

PT J
AU Roy, S
   Ernst, J
   Kharchenko, PV
   Kheradpour, P
   Negre, N
   Eaton, ML
   Landolin, JM
   Bristow, CA
   Ma, LJ
   Lin, MF
   Washietl, S
   Arshinoff, BI
   Ay, F
   Meyer, PE
   Robine, N
   Washington, NL
   Di Stefano, L
   Berezikov, E
   Brown, CD
   Candeias, R
   Carlson, JW
   Carr, A
   Jungreis, I
   Marbach, D
   Sealfon, R
   Tolstorukov, MY
   Will, S
   Alekseyenko, AA
   Artieri, C
   Booth, BW
   Brooks, AN
   Dai, Q
   Davis, CA
   Duff, MO
   Feng, X
   Gorchakov, AA
   Gu, TT
   Henikoff, JG
   Kapranov, P
   Li, RH
   MacAlpine, HK
   Malone, J
   Minoda, A
   Nordman, J
   Okamura, K
   Perry, M
   Powell, SK
   Riddle, NC
   Sakai, A
   Samsonova, A
   Sandler, JE
   Schwartz, YB
   Sher, N
   Spokony, R
   Sturgill, D
   van Baren, M
   Wan, KH
   Yang, L
   Yu, C
   Feingold, E
   Good, P
   Guyer, M
   Lowdon, R
   Ahmad, K
   Andrews, J
   Berger, B
   Brenner, SE
   Brent, MR
   Cherbas, L
   Elgin, SCR
   Gingeras, TR
   Grossman, R
   Hoskins, RA
   Kaufman, TC
   Kent, W
   Kuroda, MI
   Orr-Weaver, T
   Perrimon, N
   Pirrotta, V
   Posakony, JW
   Ren, B
   Russell, S
   Cherbas, P
   Graveley, BR
   Lewis, S
   Micklem, G
   Oliver, B
   Park, PJ
   Celniker, SE
   Henikoff, S
   Karpen, GH
   Lai, EC
   MacAlpine, DM
   Stein, LD
   White, KP
   Kellis, M
AF Roy, Sushmita
   Ernst, Jason
   Kharchenko, Peter V.
   Kheradpour, Pouya
   Negre, Nicolas
   Eaton, Matthew L.
   Landolin, Jane M.
   Bristow, Christopher A.
   Ma, Lijia
   Lin, Michael F.
   Washietl, Stefan
   Arshinoff, Bradley I.
   Ay, Ferhat
   Meyer, Patrick E.
   Robine, Nicolas
   Washington, Nicole L.
   Di Stefano, Luisa
   Berezikov, Eugene
   Brown, Christopher D.
   Candeias, Rogerio
   Carlson, Joseph W.
   Carr, Adrian
   Jungreis, Irwin
   Marbach, Daniel
   Sealfon, Rachel
   Tolstorukov, Michael Y.
   Will, Sebastian
   Alekseyenko, Artyom A.
   Artieri, Carlo
   Booth, Benjamin W.
   Brooks, Angela N.
   Dai, Qi
   Davis, Carrie A.
   Duff, Michael O.
   Feng, Xin
   Gorchakov, Andrey A.
   Gu, Tingting
   Henikoff, Jorja G.
   Kapranov, Philipp
   Li, Renhua
   MacAlpine, Heather K.
   Malone, John
   Minoda, Aki
   Nordman, Jared
   Okamura, Katsutomo
   Perry, Marc
   Powell, Sara K.
   Riddle, Nicole C.
   Sakai, Akiko
   Samsonova, Anastasia
   Sandler, Jeremy E.
   Schwartz, Yuri B.
   Sher, Noa
   Spokony, Rebecca
   Sturgill, David
   van Baren, Marijke
   Wan, Kenneth H.
   Yang, Li
   Yu, Charles
   Feingold, Elise
   Good, Peter
   Guyer, Mark
   Lowdon, Rebecca
   Ahmad, Kami
   Andrews, Justen
   Berger, Bonnie
   Brenner, Steven E.
   Brent, Michael R.
   Cherbas, Lucy
   Elgin, Sarah C. R.
   Gingeras, Thomas R.
   Grossman, Robert
   Hoskins, Roger A.
   Kaufman, Thomas C.
   Kent, William
   Kuroda, Mitzi I.
   Orr-Weaver, Terry
   Perrimon, Norbert
   Pirrotta, Vincenzo
   Posakony, James W.
   Ren, Bing
   Russell, Steven
   Cherbas, Peter
   Graveley, Brenton R.
   Lewis, Suzanna
   Micklem, Gos
   Oliver, Brian
   Park, Peter J.
   Celniker, Susan E.
   Henikoff, Steven
   Karpen, Gary H.
   Lai, Eric C.
   MacAlpine, David M.
   Stein, Lincoln D.
   White, Kevin P.
   Kellis, Manolis
CA modENCODE Consortium
TI Identification of Functional Elements and Regulatory Circuits by
   Drosophila modENCODE
SO SCIENCE
LA English
DT Article
ID PREDICTIVE CHROMATIN SIGNATURES; TRANSCRIPTION FACTORS; SOMATIC-CELLS;
   HUMAN GENOME; DNA-BINDING; RNA PATHWAY; MELANOGASTER; SEQUENCE; REGIONS;
   NETWORK
AB To gain insight into how genomic information is translated into cellular and developmental programs, the Drosophila model organism Encyclopedia of DNA Elements (modENCODE) project is comprehensively mapping transcripts, histone modifications, chromosomal proteins, transcription factors, replication proteins and intermediates, and nucleosome properties across a developmental time course and in multiple cell lines. We have generated more than 700 data sets and discovered protein-coding, noncoding, RNA regulatory, replication, and chromatin elements, more than tripling the annotated portion of the Drosophila genome. Correlated activity patterns of these elements reveal a functional regulatory network, which predicts putative new functions for genes, reveals stage-and tissue-specific regulators, and enables gene-expression prediction. Our results provide a foundation for directed experimental and computational studies in Drosophila and related species and also a model for systematic data integration toward comprehensive genomic and functional annotation.
C1 [Roy, Sushmita; Ernst, Jason; Kheradpour, Pouya; Bristow, Christopher A.; Lin, Michael F.; Washietl, Stefan; Ay, Ferhat; Meyer, Patrick E.; Di Stefano, Luisa; Candeias, Rogerio; Jungreis, Irwin; Marbach, Daniel; Sealfon, Rachel; Will, Sebastian; Berger, Bonnie; Kellis, Manolis] MIT, Comp Sci & Artificial Intelligence Lab, Cambridge, MA 02139 USA.
   [Roy, Sushmita; Ernst, Jason; Kheradpour, Pouya; Bristow, Christopher A.; Lin, Michael F.; Jungreis, Irwin; Marbach, Daniel; Sealfon, Rachel; Berger, Bonnie; Kellis, Manolis] MIT, Broad Inst, Cambridge, MA 02140 USA.
   [Roy, Sushmita; Ernst, Jason; Kheradpour, Pouya; Bristow, Christopher A.; Lin, Michael F.; Jungreis, Irwin; Marbach, Daniel; Sealfon, Rachel; Berger, Bonnie; Kellis, Manolis] Harvard Univ, Cambridge, MA 02140 USA.
   [Kharchenko, Peter V.; Tolstorukov, Michael Y.; Schwartz, Yuri B.; Park, Peter J.] Harvard Univ, Sch Med, Ctr Biomed Informat, Boston, MA 02115 USA.
   [Negre, Nicolas; Ma, Lijia; Brown, Christopher D.; Spokony, Rebecca; Grossman, Robert; White, Kevin P.] Univ Chicago, Inst Genom & Syst Biol, Dept Human Genet, Chicago, IL 60637 USA.
   [Eaton, Matthew L.; MacAlpine, Heather K.; Powell, Sara K.; MacAlpine, David M.] Duke Univ, Med Ctr, Dept Pharmacol & Canc Biol, Durham, NC 27710 USA.
   [Landolin, Jane M.; Carlson, Joseph W.; Booth, Benjamin W.; Minoda, Aki; Sandler, Jeremy E.; Wan, Kenneth H.; Yu, Charles; Hoskins, Roger A.; Celniker, Susan E.; Karpen, Gary H.] Lawrence Berkeley Natl Lab, Dept Genome Dynam, Berkeley, CA 94720 USA.
   [Arshinoff, Bradley I.] Univ Toronto, Dept Mol Genet, Toronto, ON M5S 1A1, Canada.
   [Robine, Nicolas; Dai, Qi; Henikoff, Jorja G.; Okamura, Katsutomo; Lai, Eric C.] Sloan Kettering Inst, New York, NY 10065 USA.
   [Washington, Nicole L.; Lewis, Suzanna] LBNL, Genome Sci Div, Berkeley, CA 94720 USA.
   [Carr, Adrian; Russell, Steven; Micklem, Gos] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England.
   [Carr, Adrian; Russell, Steven; Micklem, Gos] Univ Cambridge, Cambridge Syst Biol Ctr, Cambridge CB2 3EH, England.
   [Alekseyenko, Artyom A.; Gorchakov, Andrey A.; Kuroda, Mitzi I.] Harvard Univ, Brigham & Womens Hosp, Sch Med, Dept Med, Boston, MA 02115 USA.
   [Alekseyenko, Artyom A.; Gorchakov, Andrey A.; Kuroda, Mitzi I.] Harvard Univ, Brigham & Womens Hosp, Sch Med, Dept Genet, Boston, MA 02115 USA.
   [Artieri, Carlo; Malone, John; Sturgill, David; Oliver, Brian] NIDDK, Sect Dev Genom, Cellular & Dev Biol Lab, NIH, Bethesda, MD 20892 USA.
   [Davis, Carrie A.; Feng, Xin; Gingeras, Thomas R.] Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA.
   [Duff, Michael O.; Yang, Li; Graveley, Brenton R.] Univ Connecticut, Stem Cell Inst, Dept Genet & Dev Biol, Farmington, CT 06030 USA.
   [Gu, Tingting; Riddle, Nicole C.; Elgin, Sarah C. R.] Washington Univ, Dept Biol, St Louis, MO 63130 USA.
   [Kapranov, Philipp; Gingeras, Thomas R.] Affymetrix, Santa Clara, CA 95051 USA.
   [Li, Renhua; Feingold, Elise; Good, Peter; Guyer, Mark; Lowdon, Rebecca] NHGRI, Div Extramural Res, NIH, Bethesda, MD 20892 USA.
   [Arshinoff, Bradley I.; Feng, Xin; Perry, Marc; Stein, Lincoln D.] Ontario Inst Canc Res, Toronto, ON M5G 0A3, Canada.
   [Samsonova, Anastasia; Perrimon, Norbert] Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USA.
   [Samsonova, Anastasia; Perrimon, Norbert] Harvard Univ, Sch Med, Drosophila RNAi Screening Ctr, Boston, MA 02115 USA.
   [van Baren, Marijke; Brent, Michael R.] Washington Univ, Ctr Genome Sci, St Louis, MO 63108 USA.
   [Andrews, Justen; Cherbas, Lucy; Kaufman, Thomas C.; Cherbas, Peter] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA.
   [Nordman, Jared; Sher, Noa; Orr-Weaver, Terry] Whitehead Inst, Cambridge, MA 02142 USA.
   [Berezikov, Eugene] Royal Netherlands Acad Arts & Sci, Hubrecht Inst, Utrecht, Netherlands.
   [Berezikov, Eugene] Univ Med Ctr Utrecht, Utrecht, Netherlands.
   [Cherbas, Lucy; Cherbas, Peter] Indiana Univ, Ctr Genom & Bioinformat, Bloomington, IN 47405 USA.
   [Henikoff, Steven] Fred Hutchinson Canc Res Ctr, Div Basic Sci, Seattle, WA 98109 USA.
   [Posakony, James W.; Ren, Bing] Univ Calif San Diego, Sect Cell & Dev Biol, Div Biol Sci, La Jolla, CA 92093 USA.
   [Pirrotta, Vincenzo] Rutgers State Univ, Dept Mol Biol & Biochem, Piscataway, NJ 08854 USA.
   [Brooks, Angela N.; Brenner, Steven E.; Karpen, Gary H.] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA.
   [Sakai, Akiko; Ahmad, Kami] Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA.
   [Meyer, Patrick E.] Univ Libre Brussels, Machine Learning Grp, B-1050 Brussels, Belgium.
   [Di Stefano, Luisa] Harvard Univ, Sch Med, Massachusetts Gen Hosp, Ctr Canc, Charlestown, MA 02129 USA.
   [Brenner, Steven E.] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA.
   [Ay, Ferhat] Univ Florida, Gainesville, FL 32611 USA.
   [Kent, William] Univ Calif Santa Cruz, Sch Engn, Ctr Biomol Sci & Engn, Santa Cruz, CA 95064 USA.
   [Kent, William] Univ Calif Santa Cruz, Howard Hughes Med Inst, Santa Cruz, CA 95064 USA.
   [Feng, Xin] SUNY Stony Brook, Dept Biomed Engn, Stony Brook, NY 11794 USA.
RP Kellis, M (reprint author), MIT, Comp Sci & Artificial Intelligence Lab, 77 Massachusetts Ave, Cambridge, MA 02139 USA.
EM celniker@fruitfly.org; steveh@fhcrc.org; karpen@fruitfly.org;
   laie@mskcc.org; david.macalpine@duke.edu; lincoln.stein@gmail.com;
   kpwhite@uchicago.edu; manoli@mit.edu
RI Samsonova, Anastasia/Q-7591-2016; Minoda, Aki/D-5335-2017; Sakai,
   Akiko/A-8929-2010; Eaton, Matthew/C-4408-2011; jiang,
   lichun/F-3776-2012; White, Rob/G-4835-2012; Russell, Steve/A-4072-2011;
   Brooks, Angela/B-6173-2011; Graveley, Brenton/C-3108-2013; Hansen,
   Kasper/E-6094-2011; Berezikov, Eugene/D-3363-2013; Brenner,
   Steven/A-8729-2008; Venken, Koen/B-9909-2013; Gorchakov,
   Andrey/N-5840-2015
OI Samsonova, Anastasia/0000-0002-9353-9173; Minoda,
   Aki/0000-0002-2927-5791; Gingeras, Thomas/0000-0001-9106-3573;
   Washington, Nicole/0000-0001-8936-9143; Grossman,
   Robert/0000-0003-3741-5739; Graveley, Brenton/0000-0001-5777-5892;
   Rutherford, Kim/0000-0001-6277-726X; McKay, Sheldon/0000-0002-4011-3160;
   Micklem, Gos/0000-0002-6883-6168; Lewis, Suzanna/0000-0002-8343-612X;
   Meyer, Folker/0000-0003-1112-2284; Lloyd, Paul/0000-0003-3508-5553;
   Bellen, Hugo/0000-0001-5992-5989; Hinrichs, Angie/0000-0002-1697-1130;
   Negre, Nicolas/0000-0001-9727-3416; Robine, Nicolas/0000-0001-5698-8183;
   Brown, Christopher/0000-0002-3785-5008; jiang,
   lichun/0000-0003-2462-7636; Russell, Steve/0000-0003-0546-3031; Hansen,
   Kasper/0000-0003-0086-0687; Berezikov, Eugene/0000-0002-1145-2884;
   Brenner, Steven/0000-0001-7559-6185; Venken, Koen/0000-0003-0741-4698;
   Gorchakov, Andrey/0000-0003-2830-4236
FU National Human Genome Research Institute [RC2HG005639, U01HG004271,
   U01HG004258, U01HG004264, U01HG004279, U01HG004261, U01HG004274,
   U41HG004269]; LBNL [DE-AC02-05CH11231]; NSF [0937060, 0905968, 0644282];
   Natural Sciences and Engineering Research Council of Canada (NSERC);
   Japan Society for the Promotion of Science; Swedish Research Council;
   NIH National Research Service; National Defense Science and Engineering;
   Austrian Fonds zur Forderung der wissenschaftlichen Forschung; Leukemia
   and Lymphoma Society; Lilly-Life Sciences Research Foundation;
   Affymetrix; Swiss National Science Foundation; German Research
   Foundation [WI 3628/1-1]; HHMI; Indiana Genomics Initiative; NIDDK
   genomics core laboratory; NIH [R01HG004037]; Sloan Foundation
FX This work was supported by the National Human Genome Research Institute
   as part of the modENCODE project under RC2HG005639 (M.K.), U01HG004271
   (S.E.C.), U01HG004258 (G.H.K.), U01HG004264 (K.P.W.), U01HG004279
   (D.M.M.), U01HG004261 (E.L.), U01HG004274 (S.H.), and U41HG004269
   (L.S.). Awards to S.E.C. and G.H.K. were carried out at LBNL under
   contract no. DE-AC02-05CH11231. Additional support was provided by the
   NSF under grant 0937060 to the Computing Research Association for the
   CIFellows Project (S.R.) and under award no. 0905968 (J.E.), a Natural
   Sciences and Engineering Research Council of Canada (NSERC) fellowship
   (B.A.), T. Kahveci (F.A.), the Japan Society for the Promotion of
   Science (K.O.), the Swedish Research Council (Q.D.), a NIH National
   Research Service Award postdoctoral fellowship (C.A.B.), a National
   Defense Science and Engineering Graduate Fellowship (R.S.), an Erwin
   Schrodinger Fellowship of the Austrian Fonds zur Forderung der
   wissenschaftlichen Forschung (S.W.), a Leukemia and Lymphoma Society
   fellowship (S.W.), a Lilly-Life Sciences Research Foundation fellowship
   (C.D.B.), a NSERC postdoctoral fellowship (C. G. A.), Affymetrix
   (T.G.R.), a fellowship from the Swiss National Science Foundation
   (D.M.), a German Research Foundation grant WI 3628/1-1 (S.W.), a HHMI
   Damon Runyon Cancer Research fellowship (J.T.N.), the Indiana Genomics
   Initiative (T.C.K.), H. Smith and the NIDDK genomics core laboratory
   (B.O.), NIH R01HG004037, NSF CAREER award 0644282, and the Sloan
   Foundation (M.K.). A full list of author contributions is available in
   the SOM.
NR 69
TC 524
Z9 531
U1 17
U2 82
PU AMER ASSOC ADVANCEMENT SCIENCE
PI WASHINGTON
PA 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA
SN 0036-8075
J9 SCIENCE
JI Science
PD DEC 23
PY 2010
VL 330
IS 6012
BP 1787
EP 1797
DI 10.1126/science.1198374
PG 11
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 698OS
UT WOS:000285603700032
ER

PT J
AU Teolis, BD
   Jones, GH
   Miles, PF
   Tokar, RL
   Magee, BA
   Waite, JH
   Roussos, E
   Young, DT
   Crary, FJ
   Coates, AJ
   Johnson, RE
   Tseng, WL
   Baragiola, RA
AF Teolis, B. D.
   Jones, G. H.
   Miles, P. F.
   Tokar, R. L.
   Magee, B. A.
   Waite, J. H.
   Roussos, E.
   Young, D. T.
   Crary, F. J.
   Coates, A. J.
   Johnson, R. E.
   Tseng, W-L
   Baragiola, R. A.
TI Cassini Finds an Oxygen-Carbon Dioxide Atmosphere at Saturn's Icy Moon
   Rhea
SO SCIENCE
LA English
DT Article
ID CONDENSED O-2; SATELLITES; GANYMEDE; OZONE; CALLISTO; EUROPA; DIONE
AB The flyby measurements of the Cassini spacecraft at Saturn's moon Rhea reveal a tenuous oxygen (O(2))-carbon dioxide (CO(2)) atmosphere. The atmosphere appears to be sustained by chemical decomposition of the surface water ice under irradiation from Saturn's magnetospheric plasma. This in situ detection of an oxidizing atmosphere is consistent with remote observations of other icy bodies, such as Jupiter's moons Europa and Ganymede, and suggestive of a reservoir of radiolytic O(2) locked within Rhea's ice. The presence of CO(2) suggests radiolysis reactions between surface oxidants and organics or sputtering and/or outgassing of CO(2) endogenic to Rhea's ice. Observations of outflowing positive and negative ions give evidence for pickup ionization as a major atmospheric loss mechanism.
C1 [Teolis, B. D.; Miles, P. F.; Magee, B. A.; Waite, J. H.; Young, D. T.; Crary, F. J.] SW Res Inst, Space Sci & Engn Div, San Antonio, TX 78238 USA.
   [Jones, G. H.; Coates, A. J.] Univ Coll London, Mullard Space Sci Lab, Dept Space & Climate Phys, Dorking RH5 6NT, Surrey, England.
   [Jones, G. H.; Coates, A. J.] UCL Birkbeck, Ctr Planetary Sci, London WC1E 6BT, England.
   [Tokar, R. L.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Roussos, E.] Max Planck Inst Sonnensyst Forsch, D-37191 Katlenburg Lindau, Germany.
   [Johnson, R. E.; Tseng, W-L; Baragiola, R. A.] Univ Virginia, Dept Mat Sci & Engn, Charlottesville, VA 22903 USA.
RP Teolis, BD (reprint author), SW Res Inst, Space Sci & Engn Div, 6220 Culebra Rd, San Antonio, TX 78238 USA.
EM ben.teolis@swri.org
RI Roussos, Elias/H-2249-2011; Coates, Andrew/C-2396-2008; Jones,
   Geraint/C-1682-2008; 
OI Coates, Andrew/0000-0002-6185-3125; Jones, Geraint/0000-0002-5859-1136;
   Roussos, Elias/0000-0002-5699-0678
FU NASA under SwRI [1283095]; Jet Propulsion Laboratory under SwRI
   [1356497]; UK Science and Technology Facilities Council; NSF
   [AST0807830]
FX We thank E. Roussos, D. Mitchell, and the Cassini MIMI team for
   providing the MIMI data used in figs. S1 and S4 and N. G. Petrik, A. G.
   Kavetsky, and G. A. Kimmel at Pacific Northwest National Laboratory,
   Richland, Washington, USA, for contributing the O<INF>2</INF>
   electron-stimulated desorption measurements in fig. S9. The INMS and
   CAPS teams acknowledge support from NASA and the Jet Propulsion
   Laboratory under SwRI subcontracts 1283095 and 1356497, respectively.
   G.H.J. and A.J.C. acknowledge support for CAPS-ELS operations and
   analysis by the United Kingdom Space Agency, and G.H.J. was supported by
   a UK Science and Technology Facilities Council Advanced Fellowship.
   B.D.T. and R.A.B. acknowledge support by the NSF Astronomy and
   Astrophysics Program through grant AST0807830.
NR 23
TC 59
Z9 59
U1 5
U2 19
PU AMER ASSOC ADVANCEMENT SCIENCE
PI WASHINGTON
PA 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA
SN 0036-8075
J9 SCIENCE
JI Science
PD DEC 23
PY 2010
VL 330
IS 6012
BP 1813
EP 1815
DI 10.1126/science.1198366
PG 3
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 698OS
UT WOS:000285603700038
PM 21109635
ER

PT J
AU Helm, RF
   Jervis, J
   Ray, WK
   Willoughby, N
   Irvin, B
   Hastie, J
   Schell, DJ
   Nagle, N
AF Helm, Richard F.
   Jervis, Judith
   Ray, W. Keith
   Willoughby, Nicholas
   Irvin, Benjamin
   Hastie, Jessica
   Schell, Daniel J.
   Nagle, Nick
TI Mass Spectral Analyses of Corn Stover Prehydrolysates To Assess
   Conditioning Processes
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE Conditioning; corn stover; malate; mass spectrometry; oligosaccharides;
   limit xylodextrins
ID DILUTE-SULFURIC-ACID; STRAW LIGNIN POLYMER; FERMENTATION INHIBITORS;
   SACCHAROMYCES-CEREVISIAE; ALKALINE DETOXIFICATION; D-XYLOSE;
   SPECTROMETRY; PRETREATMENT; ETHANOL; ELUCIDATION
AB Flow injection electrospray (FIE) and LC-tandem mass spectrometry techniques were used to characterize corn stover acid hydrolysates before and after overliming and ammonia conditioning steps. Analyses were performed on samples without fractionation (dilution only) in an effort provide an inventory of ionizable substances. Statistical evaluation of the results indicates that the ammonia-treated and crude hydrolysates were more similar to one another than any other pairing, with conditioning leading to a decrease in malate levels. LC-tandem mass spectrometry studies were also developed to characterize the oligosaccharides present in each hydrolysate utilizing a hydrophilic interaction chromatographic separation method. Neutral and acidic pentose-based oligosaccharides (xylodextrins) with degrees of polymerization between 2 and 5 were quantified with 4-O-methyl glucuronic acid-containing dimer and trimers predominating. Conditioning had little effect on the quantified oligosaccharide pool.
C1 [Helm, Richard F.; Jervis, Judith; Ray, W. Keith; Willoughby, Nicholas; Irvin, Benjamin; Hastie, Jessica] Virginia Tech, Dept Biochem, Blacksburg, VA 24061 USA.
   [Schell, Daniel J.; Nagle, Nick] Natl Renewable Energy Lab, Golden, CO 80401 USA.
RP Helm, RF (reprint author), Virginia Tech, Dept Biochem, Blacksburg, VA 24061 USA.
EM helmrf@vt.edu
OI Helm, Richard/0000-0001-5317-0925
FU US Department of Energy through NREL [NDJ-7-77600]
FX This work was funded by the Biomass Program of the US Department of
   Energy through NREL Subcontract NDJ-7-77600 to Virginia Tech.
NR 39
TC 6
Z9 6
U1 2
U2 11
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD DEC 22
PY 2010
VL 58
IS 24
BP 12642
EP 12649
DI 10.1021/jf1031197
PG 8
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
   Technology
SC Agriculture; Chemistry; Food Science & Technology
GA 693PQ
UT WOS:000285236400010
PM 21080713
ER

PT J
AU Hakala, JA
   Chin, YP
AF Hakala, Jacqueline Alexandra
   Chin, Yu-Ping
TI Abiotic Reduction of Pendimethalin and Trifluralin in Controlled and
   Natural Systems Containing Fe(II) and Dissolved Organic Matter
SO JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
LA English
DT Article
DE Trifluralin; pendimethalin; dinitroaniline; Fe(II); dissolved organic
   matter; pore water; reduction; iron; pesticide; Pony Lake fulvic acid;
   Suwannee River fulvic acid; Old Woman Creek fulvic acid
ID NITROAROMATIC COMPOUNDS; DEGRADATION; IRON; PENTACHLORONITROBENZENE;
   TRANSFORMATION; PESTICIDES; COMPLEXES; WATERS; CARBON
AB The environmental fate of dinitroaniline herbicides is poorly understood, despite their classification as Persistent Bioaccumulative Toxins by the U.S. Environmental Protection Agency. This study investigated the abiotic reduction of pendimethalin and trifluralin in controlled laboratory systems in the presence of Fe(II) and fulvic acids isolated from various surface waters and in sediment pore waters containing naturally abundant levels of dissolved Fe(II) and dissolved organic matter (DOM). It was found that Fe(II) was necessary for pendimethalin and trifluralin reduction to occur in controlled systems and that higher concentrations of DOM slowed Fe(II)-mediated reactions. Pendimethalin and trifluralin reduction in natural pore waters was roughly an order of magnitude slower compared to controlled Fe(II) DOM solutions, indicating that the reactive Fe(II) species responsible for reduction are concentration-limited in natural pore waters relative to controlled systems. The results show that caution must be exercised when extrapolating results from controlled system reactions to natural systems and that abiotic reduction of both trifluralin and pendimethalin is observed within 3-7 days in anaerobic sedimentary pore waters containing high concentrations of both dissolved Fe(II) and DOM.
C1 [Hakala, Jacqueline Alexandra] Natl Energy Technol Lab, Geosci Div, Pittsburgh, PA 15236 USA.
   [Chin, Yu-Ping] Ohio State Univ, Sch Earth Sci, Mendenhall Lab 275, Columbus, OH 43210 USA.
RP Hakala, JA (reprint author), Natl Energy Technol Lab, Geosci Div, POB 10940, Pittsburgh, PA 15236 USA.
EM Jacqueline.Hakala@netl.doe.gov
NR 34
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Z9 9
U1 2
U2 26
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0021-8561
J9 J AGR FOOD CHEM
JI J. Agric. Food Chem.
PD DEC 22
PY 2010
VL 58
IS 24
BP 12840
EP 12846
DI 10.1021/jf102814b
PG 7
WC Agriculture, Multidisciplinary; Chemistry, Applied; Food Science &
   Technology
SC Agriculture; Chemistry; Food Science & Technology
GA 693PQ
UT WOS:000285236400038
PM 21087048
ER

PT J
AU Halford, AJ
   Fraser, BJ
   Morley, SK
AF Halford, A. J.
   Fraser, B. J.
   Morley, S. K.
TI EMIC wave activity during geomagnetic storm and nonstorm periods: CRRES
   results
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID ION-CYCLOTRON WAVES; PITCH-ANGLE SCATTERING; RING CURRENT; MAGNETIC
   STORMS; RADIATION-BELT; GEOSYNCHRONOUS ORBIT; MAGNETOSPHERE; PLASMA;
   DYNAMICS; TIME
AB Electromagnetic ion cyclotron (EMIC) waves have been observed during geomagnetic storms and are thought to contribute to ring current and radiation belt particle loss during the main phase. Ground-based storm time studies alternatively observe the majority of storm time Pc1-2 pulsations during the recovery phase. In this study we look at the occurrences of EMIC waves during 119 storms occurring throughout the CRRES mission. The storms were defined using the Sym-H index. The storm was divided into three phases: pre-onset, main, and recovery (80% of minimum Sym-H value). The majority, 56.25%, of storm time EMIC waves were found to occur during the main phase, while 35.57% were observed in the recovery phase. The recovery phase definition was then extended to 6 days after the minimum in order to compare with past ground studies. Although more EMIC waves were observed during this extended recovery phase, the maximum occurrence rate of EMIC waves remains in the main phase. A slight increase does appear in the 4-6 days after the minimum Sym-H value. The mean occurrence location of EMIC waves was at L = 6.07, MLT = 15.12. This suggests that EMIC waves may have been generated when the ring current and plasmasphere or plasma plume particle populations overlap, often observed during the main phase due to storm dynamics. The rise in the occurrence rate in the extended recovery phase potentially is dominated by the process of plasmaspheric expansion after the end of the storm.
C1 [Halford, A. J.; Fraser, B. J.] Univ Newcastle, Ctr Space Phys, Callaghan, NSW 2308, Australia.
   [Morley, S. K.] Los Alamos Natl Lab, Space Sci & Applicat ISR 1, Los Alamos, NM 87545 USA.
RP Halford, AJ (reprint author), Univ Newcastle, Ctr Space Phys, Callaghan, NSW 2308, Australia.
EM alexa.halford@gmail.com; brian.fraser@newcastle.edu.au; smorley@lanl.gov
RI Morley, Steven/A-8321-2008; 
OI Morley, Steven/0000-0001-8520-0199; Halford, Alexa/0000-0002-5383-4602
FU Australian Research Council [DP0772504, LX0882515]; University of
   Newcastle
FX This research was supported by Australian Research Council Project grant
   DP0772504 and Linkage International grant LX0882515. We would like to
   thank WDC for Geomagnetism, Kyoto for providing the Sym-H and Kp
   indices. A.J. Halford was supported by a University of Newcastle
   Postgraduate Research Scholarship.
NR 69
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Z9 56
U1 0
U2 5
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-9380
EI 2169-9402
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 22
PY 2010
VL 115
AR A12248
DI 10.1029/2010JA015716
PG 15
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 699BS
UT WOS:000285639500003
ER

PT J
AU Beeler, B
   Good, B
   Rashkeev, S
   Deo, C
   Baskes, M
   Okuniewski, M
AF Beeler, B.
   Good, B.
   Rashkeev, S.
   Deo, C.
   Baskes, M.
   Okuniewski, M.
TI First principles calculations for defects in U
SO JOURNAL OF PHYSICS-CONDENSED MATTER
LA English
DT Article
ID TOTAL-ENERGY CALCULATIONS; AUGMENTED-WAVE METHOD; ELECTRON-GAS; URANIUM;
   METALS; TEMPERATURES; STABILITY; PLUTONIUM; PHASE; MODEL
AB Uranium (U) exhibits a high temperature body-centered cubic (bcc) allotrope that is often stabilized by alloying with transition metals such as Zr, Mo, and Nb for technological applications. One such application involves U-Zr as nuclear fuel, where radiation damage and diffusion (processes heavily dependent on point defects) are of vital importance. Several systems of U are examined within a density functional theory framework utilizing projector augmented wave pseudopotentials. Two separate generalized gradient approximations of the exchange-correlation are used to calculate defect properties and are compared. The bulk modulus, the lattice constant, and the Birch-Murnaghan equation of state for the defect free bcc uranium allotrope are calculated. Defect parameters calculated include energies of formation of vacancies in the alpha and gamma allotropes, as well as self-interstitials, Zr interstitials, and Zr substitutional defects for the gamma allotrope. The results for vacancies agree very well with experimental and previous computational studies. The most probable self-interstitial site in gamma-U is the < 110 > dumbbell, and the most probable defect location for dilute Zr in. gamma-U is the substitutional site. This is the first detailed study of self-defects in the bcc allotrope of U and also the first comprehensive study of dilute Zr defects in. gamma-U.
C1 [Beeler, B.; Good, B.; Deo, C.] Georgia Inst Technol, Atlanta, GA 30318 USA.
   [Rashkeev, S.; Okuniewski, M.] Idaho Natl Lab, Idaho Falls, ID 83415 USA.
   [Baskes, M.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Baskes, M.] Univ Calif San Diego, La Jolla, CA 92093 USA.
RP Beeler, B (reprint author), Georgia Inst Technol, 770 State St, Atlanta, GA 30318 USA.
EM benbeeler@gatech.edu
FU DOE NERI-C [DEFG0714891]; INL [DE-AC07-05ID14517]; Office of Nuclear
   Energy of the US Department of Energy [DE-AC07-05ID14517]
FX We acknowledge support from DOE NERI-C Grant No. DEFG0714891 and INL
   subcontract DE-AC07-05ID14517. BB acknowledges computing resources
   provided by Idaho National Laboratory, which is supported by the Office
   of Nuclear Energy of the US Department of Energy under contract
   DE-AC07-05ID14517.
NR 28
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U1 4
U2 33
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 0953-8984
J9 J PHYS-CONDENS MAT
JI J. Phys.-Condes. Matter
PD DEC 22
PY 2010
VL 22
IS 50
AR 505703
DI 10.1088/0953-8984/22/50/505703
PG 7
WC Physics, Condensed Matter
SC Physics
GA 690ZK
UT WOS:000285049200016
PM 21406806
ER

PT J
AU Dunne, JF
   Fulton, DB
   Ellern, A
   Sadow, AD
AF Dunne, James F.
   Fulton, D. Bruce
   Ellern, Arkady
   Sadow, Aaron D.
TI Concerted C-N and C-H Bond Formation in a Magnesium-Catalyzed
   Hydroamination
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID UNPROTECTED AMINO OLEFINS; INTRAMOLECULAR HYDROAMINATION; ALKYL
   DERIVATIVES; INTERNAL ALKYNES; AMIDO BOND; COMPLEXES; INSERTION;
   MECHANISM; ALKENES; AMINOALKENES
AB Coordinatively saturated To(M)MgMe (1; To(M) = tris(4,4-dimethyl-2-oxazolinyl)phenylborate) is an active precatalyst for intramolecular hydroamination/cyclization at 50 degrees C. The empirical rate law of -d[substrate]/dt = K-obs[Mg](1)[substrate](1) and Michaelis-Menten-type kinetics are consistent with a mechanism involving reversible catalyst-substrate association prior to cyclization. The resting state of the catalyst, To(M)MgNHCH(2)CR(2)CH(2)CH=CH2 [R = Ph, Me, -(CH2)(5)-], is isolable, but isolated magnesium amidoalkene does not undergo unimolecular cyclization at 50 degrees C. However, addition of trace amounts of substrate allows cyclization to occur. Therefore, we propose a two-substrate, six-center transition state involving concerted C-N bond formation and N-H bond cleavage as the turnover-limiting step of the catalytic cycle.
C1 [Sadow, Aaron D.] Iowa State Univ, Dept Chem, Ames Lab, Ames, IA 50011 USA.
   Iowa State Univ, US DOE, Ames Lab, Ames, IA 50011 USA.
RP Sadow, AD (reprint author), Iowa State Univ, Dept Chem, Ames Lab, Ames, IA 50011 USA.
EM sadow@iastate.edu
FU U.S. DOE Office of Basic Energy Science [DE-AC02-07CH11358]; ACS Green
   Chemistry Institute-PRF; GAANN
FX We thank Dr. A. Bakac and Dr. K. Kristian for valuable mechanistic
   discussions. Mr. J. Engelkemier is thanked for preparation of
   3-d<INF>2</INF>. The U.S. DOE Office of Basic Energy Science
   (DE-AC02-07CH11358) and the ACS Green Chemistry Institute-PRF provided
   financial support. James F. Dunne is supported by a GAANN Fellowship.
   Aaron D. Sadow is an Alfred P. Sloan Fellow.
NR 38
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U1 2
U2 21
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 22
PY 2010
VL 132
IS 50
BP 17680
EP 17683
DI 10.1021/ja108881s
PG 4
WC Chemistry, Multidisciplinary
SC Chemistry
GA 696GL
UT WOS:000285429800013
PM 21117645
ER

PT J
AU Wang, LY
   Wang, X
   Luo, J
   Wanjala, BN
   Wang, CM
   Chernova, NA
   Engelhard, MH
   Liu, Y
   Bae, IT
   Zhong, CJ
AF Wang, Lingyan
   Wang, Xin
   Luo, Jin
   Wanjala, Bridgid N.
   Wang, Chongmin
   Chernova, Natasha A.
   Engelhard, Mark H.
   Liu, Yao
   Bae, In-Tae
   Zhong, Chuan-Jian
TI Core-Shell-Structured Magnetic Ternary Nanocubes
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID MNZN-FERRITE NANOPARTICLES; AU NANOPARTICLES; OXIDE; FE; NANOCRYSTALS;
   MICROEMULSIONS
AB We report a novel core-shell-structured ternary nanocube of MnZn ferrite synthesized by controlling the reaction temperature and composition in the absence of conventionally used reducing agents. The highly monodispersed core-shell structure consists of an Fe(3)O(4) core and an MnZn Ferrite shell. The observation of a Moire pattern indicates that the core and the shell are two highly crystalline materials with slightly different lattice constants that are rotated relative to each other by a small angle. The ternary core-shell nanocubes display magnetic properties regulated by a combination of the core-shell composition and exhibit an increased coercivity and field-cooled/zero-field-cooled characteristics drastically different from those of regular MnZn ferrite nanoparticles. The ability to engineer the spatial nanostructures of ternary magnetic nanoparticles in terms of shape and composition offers atomic-level versatility in fine-tuning the nanoscale magnetic properties.
C1 [Wang, Lingyan; Wang, Xin; Luo, Jin; Wanjala, Bridgid N.; Chernova, Natasha A.; Liu, Yao; Bae, In-Tae; Zhong, Chuan-Jian] SUNY Binghamton, Dept Chem, Binghamton, NY 13902 USA.
   [Wang, Chongmin; Engelhard, Mark H.] Pacific NW Natl Lab, EMSL, Richland, WA 99352 USA.
RP Zhong, CJ (reprint author), SUNY Binghamton, Dept Chem, Binghamton, NY 13902 USA.
EM cjzhong@binghamton.edu
RI Engelhard, Mark/F-1317-2010; Zhong, Chuan-Jian/D-3394-2013; 
OI Engelhard, Mark/0000-0002-5543-0812
FU NSF [CHE 0848701, CBET 0709113]
FX This work was supported by NSF (CHE 0848701, CBET 0709113). The XPS and
   some HRTEM were performed using the EMSL User Facility of the DOE at
   PNNL.
NR 39
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U1 3
U2 46
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 22
PY 2010
VL 132
IS 50
BP 17686
EP 17689
DI 10.1021/ja1091084
PG 4
WC Chemistry, Multidisciplinary
SC Chemistry
GA 696GL
UT WOS:000285429800015
PM 21121606
ER

PT J
AU Hanson, SK
   Baker, RT
   Gordon, JC
   Scott, BL
   Silks, LA
   Thorn, DL
AF Hanson, Susan K.
   Baker, R. Tom
   Gordon, John C.
   Scott, Brian L.
   Silks, L. A. Pete
   Thorn, David L.
TI Mechanism of Alcohol Oxidation by Dipicolinate Vanadium(V): Unexpected
   Role of Pyridine
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID ENANTIOSELECTIVE AEROBIC OXIDATION; ALPHA-HYDROXY ESTERS; QUINQUEVALENT
   VANADIUM; ORGANIC COMPOUNDS; MOLECULAR-OXYGEN; CATALYZED OXIDATION;
   BOND-CLEAVAGE; 2-ELECTRON OXIDATIONS; PROPARGYLIC ALCOHOLS; SELECTIVE
   OXIDATION
AB Dipicolinate vanadium(V) alkoxide complexes (dipic)V-v(O)(OR) (OR = isopropoxide (1), n-butanoxide (2), cyclobutanoxide (3), and alpha-tert-butylbenzylalkoxide (4)) react with pyridine to afford vanadium(IV) and 0.5 equiv of an aldehyde or ketone product. The role of pyridine in the reaction has been investigated. Both NMR and X-ray crystallography experiments indicate that pyridine coordinates to 1, which is in equilibrium with (dipic)V-v(O)((OPr)-Pr-i)(pyr) (1-Pyr). Kinetic studies of the alcohol oxidation suggest a pathway where the rate-limiting step is bimolecular and involves attack of pyridine on the C-H bond of the isopropoxide ligand of 1 or 1-Pyr. The oxidations of mechanistic probes cyclobutanol and alpha-tert-butylbenzylalcohol support a two-electron pathway proceeding through a vanadium(III) intermediate. The alcohol oxidation reaction is promoted by more basic pyridines and facilitated by electron-withdrawing substituents on the dipicolinate ligand. The involvement of base in the elementary alcohol oxidation step observed for the dipicolinate system is an unprecedented mechanism for vanadium-mediated alcohol oxidation and suggests new ways to tune reactivity and selectivity of vanadium catalysts.
C1 [Hanson, Susan K.] Los Alamos Natl Lab, Div Chem, Los Alamos, NM 87544 USA.
   Los Alamos Natl Lab, Biosci Div, Los Alamos, NM 87544 USA.
   Los Alamos Natl Lab, Mat Phys Applicat Div, Los Alamos, NM 87544 USA.
RP Hanson, SK (reprint author), Los Alamos Natl Lab, Div Chem, POB 1663, Los Alamos, NM 87544 USA.
EM skhanson@lanl.gov
RI Scott, Brian/D-8995-2017; 
OI Scott, Brian/0000-0003-0468-5396; Silks, Pete/0000-0002-2993-5630
FU Los Alamos National Laboratory LDRD [ER 20100160]; NSF via the Center
   for Enabling New Technologies through Catalysis (CENTC)
FX This work was supported by Los Alamos National Laboratory LDRD (ER
   20100160 and Director's PD Fellowship to S.K.H.) and NSF via the Center
   for Enabling New Technologies through Catalysis (CENTC). We thank
   Professors W. T. Borden (UNT), D. Hrovat (UNT), S. L. Scott (UCSB), and
   P. C. Ford (UCSB) for helpful discussions and collaborations, and Dr. P.
   C. Stark (LANL) for help with instrumentation.
NR 76
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U1 7
U2 50
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 22
PY 2010
VL 132
IS 50
BP 17804
EP 17816
DI 10.1021/ja105739k
PG 13
WC Chemistry, Multidisciplinary
SC Chemistry
GA 696GL
UT WOS:000285429800033
PM 21121665
ER

PT J
AU Akerib, DS
   Attisha, MJ
   Baudis, L
   Bauer, DA
   Bolozdynya, AI
   Brink, PL
   Bunker, R
   Cabrera, B
   Caldwell, DO
   Chang, CL
   Clarke, RM
   Cooley, J
   Crisler, MB
   Cushman, P
   DeJongh, F
   Dixon, R
   Driscoll, DD
   Filippini, J
   Funkhouser, S
   Gaitskell, RJ
   Golwala, SR
   Holmgren, D
   Hsu, L
   Huber, ME
   Kamat, S
   Mahapatra, R
   Mandic, V
   Meunier, P
   Mirabolfathi, N
   Moore, D
   Nam, SW
   Nelson, H
   Ogburn, RW
   Qiu, X
   Rau, W
   Reisetter, A
   Saab, T
   Sadoulet, B
   Sander, J
   Savage, C
   Schnee, RW
   Seitz, DN
   Shutt, TA
   Wang, G
   Yellin, S
   Yoo, J
   Young, BA
AF Akerib, D. S.
   Attisha, M. J.
   Baudis, L.
   Bauer, D. A.
   Bolozdynya, A. I.
   Brink, P. L.
   Bunker, R.
   Cabrera, B.
   Caldwell, D. O.
   Chang, C. L.
   Clarke, R. M.
   Cooley, J.
   Crisler, M. B.
   Cushman, P.
   DeJongh, F.
   Dixon, R.
   Driscoll, D. D.
   Filippini, J.
   Funkhouser, S.
   Gaitskell, R. J.
   Golwala, S. R.
   Holmgren, D.
   Hsu, L.
   Huber, M. E.
   Kamat, S.
   Mahapatra, R.
   Mandic, V.
   Meunier, P.
   Mirabolfathi, N.
   Moore, D.
   Nam, S. W.
   Nelson, H.
   Ogburn, R. W.
   Qiu, X.
   Rau, W.
   Reisetter, A.
   Saab, T.
   Sadoulet, B.
   Sander, J.
   Savage, C.
   Schnee, R. W.
   Seitz, D. N.
   Shutt, T. A.
   Wang, G.
   Yellin, S.
   Yoo, J.
   Young, B. A.
CA CDMS Collaboration
TI Low-threshold analysis of CDMS shallow-site data
SO PHYSICAL REVIEW D
LA English
DT Article
ID LARGE-SCALE STRUCTURE; DARK-MATTER; CONSTRAINTS; DAMA/LIBRA; EFFICIENCY;
   DETECTORS; UNIVERSE; CRYSTAL; RAVE
AB Data taken during the final shallow-site run of the first tower of the Cryogenic Dark Matter Search (CDMS II) detectors have been reanalyzed with improved sensitivity to small energy depositions. Four similar to 224 g germanium and two similar to 105 g silicon detectors were operated at the Stanford Underground Facility (SUF) between December 2001 and June 2002, yielding 118 live days of raw exposure. Three of the germanium and both silicon detectors were analyzed with a new low-threshold technique, making it possible to lower the germanium and silicon analysis thresholds down to the actual trigger thresholds of similar to 1 and similar to 2 keV, respectively. Limits on the spin-independent cross section for weakly interacting massive particles (WIMPs) to elastically scatter from nuclei based on these data exclude interesting parameter space for WIMPs with masses below 9 GeV/c(2). Under standard halo assumptions, these data partially exclude parameter space favored by interpretations of the DAMA/LIBRA and CoGeNT experiments' data as WIMP signals, and exclude new parameter space for WIMP masses between 3 and 4 GeV/c(2).
C1 [Bunker, R.; Caldwell, D. O.; Nelson, H.; Savage, C.; Yellin, S.] Univ Calif Santa Barbara, Dept Phys, Santa Barbara, CA 93106 USA.
   [Attisha, M. J.; Gaitskell, R. J.] Brown Univ, Dept Phys, Providence, RI 02912 USA.
   [Filippini, J.; Golwala, S. R.; Moore, D.] CALTECH, Div Phys Math & Astron, Pasadena, CA 91125 USA.
   [Akerib, D. S.; Bolozdynya, A. I.; Driscoll, D. D.; Kamat, S.; Wang, G.] Case Western Reserve Univ, Dept Phys, Cleveland, OH 44106 USA.
   [Bauer, D. A.; Crisler, M. B.; DeJongh, F.; Dixon, R.; Holmgren, D.; Hsu, L.; Yoo, J.] Fermilab Natl Accelerator Lab, Batavia, IL 60510 USA.
   [Sadoulet, B.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Reisetter, A.] St Olaf Coll, Dept Phys, Northfield, MN 55057 USA.
   [Shutt, T. A.] Princeton Univ, Dept Phys, Princeton, NJ 08544 USA.
   [Rau, W.] Queens Univ, Dept Phys, Kingston, ON K7L 3N6, Canada.
   [Young, B. A.] Santa Clara Univ, Dept Phys, Santa Clara, CA 95053 USA.
   [Brink, P. L.] SLAC Natl Accelerator Lab KIPAC, Menlo Pk, CA 94025 USA.
   [Cooley, J.] So Methodist Univ, Dept Phys, Dallas, TX 75275 USA.
   [Cabrera, B.; Chang, C. L.; Clarke, R. M.; Nam, S. W.; Ogburn, R. W.; Yellin, S.] Stanford Univ, Dept Phys, Stanford, CA 94305 USA.
   [Schnee, R. W.] Syracuse Univ, Dept Phys, Syracuse, NY 13244 USA.
   [Mahapatra, R.; Sander, J.] Texas A&M Univ, Dept Phys, College Stn, TX 77843 USA.
   [Funkhouser, S.; Meunier, P.; Mirabolfathi, N.; Sadoulet, B.; Seitz, D. N.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Huber, M. E.] Univ Colorado, Dept Phys, Denver, CO 80217 USA.
   [Huber, M. E.] Univ Colorado, Dept Elect Engn, Denver, CO 80217 USA.
   [Saab, T.] Univ Florida, Dept Phys, Gainesville, FL 32611 USA.
   [Cushman, P.; Mandic, V.; Qiu, X.; Reisetter, A.] Univ Minnesota, Sch Phys & Astron, Minneapolis, MN 55455 USA.
   [Baudis, L.] Univ Zurich, Inst Phys, CH-8057 Zurich, Switzerland.
RP Bunker, R (reprint author), Univ Calif Santa Barbara, Dept Phys, Santa Barbara, CA 93106 USA.
EM bunker@hep.ucsb.edu
RI Huber, Martin/B-3354-2011; Qiu, Xinjie/C-6164-2012; Yoo,
   Jonghee/K-8394-2016
FU National Science Foundation [AST-9978911, PHY-0542066, PHY-0503729,
   PHY-0503629, PHY-0503641, PHY-0504224, PHY-0705052, PHY-0801708,
   PHY-0801712, PHY-0802575, PHY-0855525, PHY-9722414]; Department of
   Energy [DE-AC03-76SF00098, DE-FG02-91ER40688, DE-FG02-92ER40701,
   DE-FG03-90ER40569, DE-FG03-91ER40618]; Swiss National Foundation (SNF)
   [20-118119]; NSERC Canada [SAPIN 341314-07]
FX The CDMS Collaboration gratefully acknowledges the contributions of
   numerous engineers and technicians. We would like to especially thank
   Judith Alvaro-Dean, Jim Beaty, Sam Burke, Daniel Callahan, Pat Castle,
   John Emes, Merle Haldeman, David Hale, Michael Hennessey, Wayne Johnson,
   Jim Perales, Garth Smith, and Astrid Tomada. Additionally, we would like
   to thank former CDMS collaborators for their contributions to the
   successful completion of this work, including Long Duong, Jochen
   Hellmig, Al Lu, John Martinis, Thushara Perera, Maria Perillo Isaac, Ron
   Ross, Tony Spadafora, and John-Paul Thompson. This work is supported in
   part by the National Science Foundation (Grants No. AST-9978911, No.
   PHY-0542066, No. PHY-0503729, No. PHY-0503629, No. PHY-0503641, No.
   PHY-0504224, No. PHY-0705052, No. PHY-0801708, No. PHY-0801712, No.
   PHY-0802575, No. PHY-0855525, and No. PHY-9722414), by the Department of
   Energy (Contracts No. DE-AC03-76SF00098, No. DE-FG02-91ER40688, No.
   DE-FG02-92ER40701, No. DE-FG03-90ER40569, and No. DE-FG03-91ER40618), by
   the Swiss National Foundation (SNF Grant No. 20-118119), and by NSERC
   Canada (Grant No. SAPIN 341314-07).
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SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 22
PY 2010
VL 82
IS 12
AR 122004
DI 10.1103/PhysRevD.82.122004
PG 18
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 713NN
UT WOS:000286744800001
ER

PT J
AU Berger, EL
   Guzzi, M
   Lai, HL
   Nadolsky, PM
   Olness, FI
AF Berger, Edmond L.
   Guzzi, Marco
   Lai, Hung-Liang
   Nadolsky, Pavel M.
   Olness, Fredrick I.
TI Constraints on color-octet fermions from a global parton distribution
   analysis
SO PHYSICAL REVIEW D
LA English
DT Article
ID MISSING TRANSVERSE ENERGY; GLUINO PRODUCTION; PARTICLE PHYSICS;
   ROOT-S=1.96 TEV; CROSS-SECTION; SEARCH; SUPERSYMMETRY; COLLISIONS;
   SQUARKS; EVENTS
AB We report a parton distribution function analysis of a complete set of hadron scattering data, in which a color-octet fermion (such as a gluino of supersymmetry) is incorporated as an extra parton constituent along with the usual standard model constituents. The data set includes the most up-to-date results from deep inelastic scattering and from jet production in hadron collisions. Another feature is the inclusion in the fit of data from determinations of the strong coupling alpha(s)(Q) at large and small values of the hard scale Q. Our motivation is to determine the extent to which the global parton distribution function analysis may provide constraints on the new fermion, as a function of its mass and alpha(s)(M-Z), independent of assumptions such as the mechanism of gluino decays. Based on this analysis, we find that gluino masses as low as 30 to 50 GeV may be compatible with the current hadronic data. Gluino masses below 15 GeV (25 GeV) are excluded if alpha(s)(M-Z) varies freely (is equal to 0.118). At the outset, stronger constraints had been anticipated from jet production cross sections, but experimental systematic uncertainties, particularly in normalization, reduce the discriminating power of these data.
C1 [Berger, Edmond L.] Argonne Natl Lab, Div High Energy Phys, Argonne, IL 60439 USA.
   [Guzzi, Marco; Nadolsky, Pavel M.; Olness, Fredrick I.] So Methodist Univ, Dept Phys, Dallas, TX 75275 USA.
   [Lai, Hung-Liang] Taipei Municipal Univ Educ, Taipei, Taiwan.
RP Berger, EL (reprint author), Argonne Natl Lab, Div High Energy Phys, Argonne, IL 60439 USA.
OI Guzzi, Marco/0000-0003-3430-2691
FU U.S. Department of Energy [DE-AC02-06CH11357, DE-FG02-04ER41299,
   DE-SC0003870]; U.S. National Science Foundation [PHY-0705862,
   PHY-0855561]; Lightner-Sams Foundation; National Science Council of
   Taiwan [NSC-98-2112-M-133-002-MY3, NSC-99-2918-I-133-001]
FX We thank Tom Rizzo for discussions regarding searches for new physics
   and bounds on gluino masses, and Mike Whalley and Andy Buckley for
   extending the LHAPDF library [55,56] to incorporate PDFs with light
   gluinos. The authors also thank CTEQ members for helpful discussions. E.
   L. B. is supported by the U.S. Department of Energy under Contract No.
   DE-AC02-06CH11357. The work at SMU is supported in part by U.S. D.O.E.
   Contract No. DE-FG02-04ER41299; the U.S. D.O.E. Early Career Research
   Grant No. DE-SC0003870; the U.S. National Science Foundation Grant No.
   PHY-0705862; and by Lightner-Sams Foundation. H.-L.L. is supported by
   the U.S. National Science Foundation under Grant No. PHY-0855561 and by
   National Science Council of Taiwan under Grants No.
   NSC-98-2112-M-133-002-MY3 and No. NSC-99-2918-I-133-001. E. L. B. and P.
   M. N. thank the Aspen Center for Physics for hospitality during the
   summer of 2010 when part of this work was done. F. I. O thanks CERN for
   hospitality during his work on this study.
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PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2470-0010
EI 2470-0029
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 22
PY 2010
VL 82
IS 11
AR 114023
DI 10.1103/PhysRevD.82.114023
PG 16
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711HH
UT WOS:000286577200006
ER

PT J
AU Bousso, R
   Freivogel, B
   Leichenauer, S
   Rosenhaus, V
AF Bousso, Raphael
   Freivogel, Ben
   Leichenauer, Stefan
   Rosenhaus, Vladimir
TI Boundary definition of a multiverse measure
SO PHYSICAL REVIEW D
LA English
DT Article
ID STATIONARY UNIVERSE; SCALAR CURVATURE; YAMABE PROBLEM; COSMOLOGY;
   CONSTANT; SPACE; TIME
AB We propose to regulate the infinities of eternal inflation by relating a late time cutoff in the bulk to a short-distance cutoff on the future boundary. The light-cone time of an event is defined in terms of the volume of its future light cone on the boundary. We seek an intrinsic definition of boundary volumes that makes no reference to bulk structures. This requires taming the fractal geometry of the future boundary and lifting the ambiguity of the conformal factor. We propose to work in the conformal frame in which the boundary Ricci scalar is constant. We explore this proposal in the Friedmann-Robertson-Walker approximation for bubble universes. Remarkably, we find that the future boundary becomes a round three-sphere, with smooth metric on all scales. Our cutoff yields the same relative probabilities as a previous proposal that defined boundary volumes by projection into the bulk along timelike geodesics. Moreover, it is equivalent to an ensemble of causal patches defined without reference to bulk geodesics. It thus yields a holographically motivated and phenomenologically successful measure for eternal inflation.
C1 [Bousso, Raphael; Freivogel, Ben; Leichenauer, Stefan; Rosenhaus, Vladimir] Univ Calif Berkeley, Dept Phys, Ctr Theoret Phys, Berkeley, CA 94720 USA.
   [Bousso, Raphael; Freivogel, Ben; Leichenauer, Stefan; Rosenhaus, Vladimir] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Bousso, Raphael] Univ Tokyo, Inst Phys & Math Universe, Kashiwa, Chiba 2778568, Japan.
RP Bousso, R (reprint author), Univ Calif Berkeley, Dept Phys, Ctr Theoret Phys, Berkeley, CA 94720 USA.
FU Berkeley Center for Theoretical Physics; National Science Foundation
   [0855653]; Institute for the Physics and Mathematics of the Universe;
   fqxi Grant [RFP2-08-06]; U.S. Department of Energy [DE-AC02-05CH11231]
FX We thank David Berenstein, Petr Horava, Gary Horowitz, Shamit Kachru,
   Steve Shenker, Eva Silverstein, Lenny Susskind, and Edward Witten for
   discussions. This work was supported by the Berkeley Center for
   Theoretical Physics, by the National Science Foundation (Grant No.
   0855653), by the Institute for the Physics and Mathematics of the
   Universe, by fqxi Grant No. RFP2-08-06, and by the U.S. Department of
   Energy under Contract No. DE-AC02-05CH11231.
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PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2470-0010
EI 2470-0029
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 22
PY 2010
VL 82
IS 12
AR 125032
DI 10.1103/PhysRevD.82.125032
PG 18
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 713NN
UT WOS:000286744800017
ER

PT J
AU Sanchez, PD
   Lees, JP
   Poireau, V
   Prencipe, E
   Tisserand, V
   Tico, JG
   Grauges, E
   Martinelli, M
   Palano, A
   Pappagallo, M
   Eigen, G
   Stugu, B
   Sun, L
   Battaglia, M
   Brown, DN
   Hooberman, B
   Kerth, LT
   Kolomensky, YG
   Lynch, G
   Osipenkov, IL
   Tanabe, T
   Hawkes, CM
   Watson, AT
   Koch, H
   Schroeder, T
   Asgeirsson, DJ
   Hearty, C
   Mattison, TS
   McKenna, JA
   Khan, A
   Randle-Conde, A
   Blinov, VE
   Buzykaev, AR
   Druzhinin, VP
   Golubev, VB
   Onuchin, AP
   Serednyakov, SI
   Skovpen, YI
   Solodov, EP
   Todyshev, KY
   Yushkov, AN
   Bondioli, M
   Curry, S
   Kirkby, D
   Lankford, AJ
   Mandelkern, M
   Martin, EC
   Stoker, DP
   Atmacan, H
   Gary, JW
   Liu, F
   Long, O
   Vitug, GM
   Campagnari, C
   Hong, TM
   Kovalskyi, D
   Richman, JD
   Eisner, AM
   Heusch, CA
   Kroseberg, J
   Lockman, WS
   Martinez, AJ
   Schalk, T
   Schumm, BA
   Seiden, A
   Winstrom, LO
   Cheng, CH
   Doll, DA
   Echenard, B
   Hitlin, DG
   Ongmongkolkul, P
   Porter, FC
   Rakitin, AY
   Andreassen, R
   Dubrovin, MS
   Mancinelli, G
   Meadows, BT
   Sokoloff, MD
   Bloom, PC
   Ford, WT
   Gaz, A
   Hirschauer, JF
   Nagel, M
   Nauenberg, U
   Smith, JG
   Wagner, SR
   Ayad, R
   Toki, WH
   Karbach, TM
   Merkel, J
   Petzold, A
   Spaan, B
   Wacker, K
   Kobel, MJ
   Schubert, KR
   Schwierz, R
   Bernard, D
   Verderi, M
   Clark, PJ
   Playfer, S
   Watson, JE
   Andreotti, M
   Bettoni, D
   Bozzi, C
   Calabrese, R
   Cecchi, A
   Cibinetto, G
   Fioravanti, E
   Franchini, P
   Luppi, E
   Munerato, M
   Negrini, M
   Petrella, A
   Piemontese, L
   Baldini-Ferroli, R
   Calcaterra, A
   de Sangro, R
   Finocchiaro, G
   Nicolaci, M
   Pacetti, S
   Patteri, P
   Peruzzi, IM
   Piccolo, M
   Rama, M
   Zallo, A
   Contri, R
   Guido, E
   Lo Vetere, M
   Monge, MR
   Passaggio, S
   Patrignani, C
   Robutti, E
   Tosi, S
   Bhuyan, B
   Morii, M
   Adametz, A
   Marks, J
   Schenk, S
   Uwer, U
   Bernlochner, FU
   Lacker, HM
   Lueck, T
   Volk, A
   Dauncey, PD
   Tibbetts, M
   Behera, PK
   Mallik, U
   Chen, C
   Cochran, J
   Crawley, HB
   Dong, L
   Meyer, WT
   Prell, S
   Rosenberg, EI
   Rubin, AE
   Gao, YY
   Gritsan, AV
   Guo, ZJ
   Arnaud, N
   Davier, M
   Derkach, D
   da Costa, JF
   Grosdidier, G
   Le Diberder, F
   Lutz, AM
   Malaescu, B
   Perez, A
   Roudeau, P
   Schune, MH
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   Sordini, V
   Stocchi, A
   Wang, L
   Wormser, G
   Lange, DJ
   Wright, DM
   Bingham, I
   Burke, JP
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   Coleman, JP
   Fry, JR
   Gabathuler, E
   Gamet, R
   Hutchcroft, DE
   Payne, DJ
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   Bevan, AJ
   Di Lodovico, F
   Sacco, R
   Sigamani, M
   Cowan, G
   Paramesvaran, S
   Wren, AC
   Brown, DN
   Davis, CL
   Denig, AG
   Fritsch, M
   Gradl, W
   Hafner, A
   Alwyn, KE
   Bailey, D
   Barlow, RJ
   Jackson, G
   Lafferty, GD
   West, TJ
   Anderson, J
   Cenci, R
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   Roberts, DA
   Simi, G
   Tuggle, JM
   Dallapiccola, C
   Salvati, E
   Cowan, R
   Dujmic, D
   Fisher, PH
   Sciolla, G
   Zhao, M
   Lindemann, D
   Patel, PM
   Robertson, SH
   Schram, M
   Biassoni, P
   Lazzaro, A
   Lombardo, V
   Palombo, F
   Stracka, S
   Cremaldi, L
   Godang, R
   Kroeger, R
   Sonnek, P
   Summers, DJ
   Zhao, HW
   Nguyen, X
   Simard, M
   Taras, P
   De Nardo, G
   Monorchio, D
   Onorato, G
   Sciacca, C
   Raven, G
   Snoek, HL
   Jessop, CP
   Knoepfel, KJ
   LoSecco, JM
   Wang, WF
   Corwin, LA
   Honscheid, K
   Kass, R
   Morris, JP
   Rahimi, AM
   Blount, NL
   Brau, J
   Frey, R
   Igonkina, O
   Kolb, JA
   Rahmat, R
   Sinev, NB
   Strom, D
   Strube, J
   Torrence, E
   Castelli, G
   Feltresi, E
   Gagliardi, N
   Margoni, M
   Morandin, M
   Posocco, M
   Rotondo, M
   Simonetto, F
   Stroili, R
   Ben-Haim, E
   Bonneaud, GR
   Briand, H
   Calderini, G
   Chauveau, J
   Hamon, O
   Leruste, P
   Marchiori, G
   Ocariz, J
   Prendki, J
   Sitt, S
   Biasini, M
   Manoni, E
   Angelini, C
   Batignani, G
   Bettarini, S
   Carpinelli, M
   Casarosa, G
   Cervelli, A
   Forti, F
   Giorgi, MA
   Lusiani, A
   Neri, N
   Paoloni, E
   Rizzo, G
   Walsh, JJ
   Pegna, DL
   Lu, C
   Olsen, J
   Smith, AJS
   Telnov, AV
   Anulli, F
   Baracchini, E
   Cavoto, G
   Faccini, R
   Ferrarotto, F
   Ferroni, F
   Gaspero, M
   Gioi, LL
   Mazzoni, MA
   Piredda, G
   Renga, F
   Ebert, M
   Hartmann, T
   Leddig, T
   Schroder, H
   Waldi, R
   Adye, T
   Franek, B
   Olaiya, EO
   Wilson, FF
   Emery, S
   de Monchenault, GH
   Vasseur, G
   Yeche, C
   Zito, M
   Allen, MT
   Aston, D
   Bard, DJ
   Bartoldus, R
   Benitez, JF
   Cartaro, C
   Convery, MR
   Dorfan, J
   Dubois-Felsmann, GP
   Dunwoodie, W
   Field, RC
   Sevilla, MF
   Fulsom, BG
   Gabareen, AM
   Graham, MT
   Grenier, P
   Hast, C
   Innes, WR
   Kelsey, MH
   Kim, H
   Kim, P
   Kocian, ML
   Leith, DWGS
   Li, S
   Lindquist, B
   Luitz, S
   Luth, V
   Lynch, HL
   MacFarlane, DB
   Marsiske, H
   Muller, DR
   Neal, H
   Nelson, S
   O'Grady, CP
   Ofte, I
   Perl, M
   Pulliam, T
   Ratcliff, BN
   Roodman, A
   Salnikov, AA
   Santoro, V
   Schindler, RH
   Schwiening, J
   Snyder, A
   Su, D
   Sullivan, MK
   Sun, S
   Suzuki, K
   Thompson, JM
   Va'vra, J
   Wagner, AP
   Weaver, M
   West, CA
   Wisniewski, WJ
   Wittgen, M
   Wright, DH
   Wulsin, HW
   Yarritu, AK
   Young, CC
   Ziegler, V
   Chen, XR
   Park, W
   Purohit, MV
   White, RM
   Wilson, JR
   Sekula, SJ
   Bellis, M
   Burchat, PR
   Edwards, AJ
   Miyashita, TS
   Ahmed, S
   Alam, MS
   Ernst, JA
   Pan, B
   Saeed, MA
   Zain, SB
   Guttman, N
   Soffer, A
   Lund, P
   Spanier, SM
   Eckmann, R
   Ritchie, JL
   Ruland, AM
   Schilling, CJ
   Schwitters, RF
   Wray, BC
   Izen, JM
   Lou, XC
   Bianchi, F
   Gamba, D
   Pelliccioni, M
   Bomben, M
   Lanceri, L
   Vitale, L
   Lopez-March, N
   Martinez-Vidal, F
   Milanes, DA
   Oyanguren, A
   Albert, J
   Banerjee, S
   Choi, HHF
   Hamano, K
   King, GJ
   Kowalewski, R
   Lewczuk, MJ
   Nugent, IM
   Roney, JM
   Sobie, RJ
   Gershon, TJ
   Harrison, PF
   Ilic, J
   Latham, TE
   Puccio, EMT
   Band, HR
   Chen, X
   Dasu, S
   Flood, KT
   Pan, Y
   Prepost, R
   Vuosalo, CO
   Wu, SL
AF Sanchez, P. del Amo
   Lees, J. P.
   Poireau, V.
   Prencipe, E.
   Tisserand, V.
   Tico, J. Garra
   Grauges, E.
   Martinelli, M.
   Palano, A.
   Pappagallo, M.
   Eigen, G.
   Stugu, B.
   Sun, L.
   Battaglia, M.
   Brown, D. N.
   Hooberman, B.
   Kerth, L. T.
   Kolomensky, Yu. G.
   Lynch, G.
   Osipenkov, I. L.
   Tanabe, T.
   Hawkes, C. M.
   Watson, A. T.
   Koch, H.
   Schroeder, T.
   Asgeirsson, D. J.
   Hearty, C.
   Mattison, T. S.
   McKenna, J. A.
   Khan, A.
   Randle-Conde, A.
   Blinov, V. E.
   Buzykaev, A. R.
   Druzhinin, V. P.
   Golubev, V. B.
   Onuchin, A. P.
   Serednyakov, S. I.
   Skovpen, Yu. I.
   Solodov, E. P.
   Todyshev, K. Yu.
   Yushkov, A. N.
   Bondioli, M.
   Curry, S.
   Kirkby, D.
   Lankford, A. J.
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TI Observation of the Y(1(3)D(J)) bottomonium state through decays to
   pi(+)pi Y-(1S)
SO PHYSICAL REVIEW D
LA English
DT Article
ID D-WAVE QUARKONIUM; HADRONIC TRANSITIONS
AB Based on 122 X 10(6)Y(3S) events collected with the BABAR detector, we have observed the Y(1(3)D(J)) bottomonium state through the Y(3S) -> gamma gamma Y(1(3)D(J)) -> gamma gamma pi(+)pi Y-(1S) decay chain. The significance for the J = 2 member of the Y(1(3)D(J)) triplet is 5.8 standard deviations including systematic uncertainties. The mass of the J = 2 state is determined to be 10 164.5 +/- 0.8(stat) +/- 0.5(syst) MeV/c(2). We use the pi(+)pi(-) invariant mass distribution to confirm the consistency of the observed state with the orbital angular momentum assignment of the Y(1(3)D(J)).
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   [Adye, T.; Franek, B.; Olaiya, E. O.; Wilson, F. F.] Rutherford Appleton Lab, Didcot OX11 0QX, Oxon, England.
   [Emery, S.; de Monchenault, G. Hamel; Vasseur, G.; Yeche, Ch.; Zito, M.] CEA, SPP, Ctr Saclay, F-91191 Gif Sur Yvette, France.
   [Allen, M. T.; Aston, D.; Bard, D. J.; Bartoldus, R.; Benitez, J. F.; Cartaro, C.; Convery, M. R.; Dorfan, J.; Dubois-Felsmann, G. P.; Dunwoodie, W.; Field, R. C.; Sevilla, M. Franco; Fulsom, B. G.; Gabareen, A. M.; Graham, M. T.; Grenier, P.; Hast, C.; Innes, W. R.; Kelsey, M. H.; Kim, H.; Kim, P.; Kocian, M. L.; Leith, D. W. G. S.; Li, S.; Lindquist, B.; Luitz, S.; Luth, V.; Lynch, H. L.; MacFarlane, D. B.; Marsiske, H.; Muller, D. R.; Neal, H.; Nelson, S.; O'Grady, C. P.; Ofte, I.; Perl, M.; Pulliam, T.; Ratcliff, B. N.; Roodman, A.; Salnikov, A. A.; Santoro, V.; Schindler, R. H.; Schwiening, J.; Snyder, A.; Su, D.; Sullivan, M. K.; Sun, S.; Suzuki, K.; Thompson, J. M.; Va'vra, J.; Wagner, A. P.; Weaver, M.; West, C. A.; Wisniewski, W. J.; Wittgen, M.; Wright, D. H.; Wulsin, H. W.; Yarritu, A. K.; Young, C. C.; Ziegler, V.] SLAC Natl Accelerator Lab, Stanford, CA 94309 USA.
   [Chen, X. R.; Park, W.; Purohit, M. V.; White, R. M.; Wilson, J. R.] Univ S Carolina, Columbia, SC 29208 USA.
   [Sekula, S. J.] So Methodist Univ, Dallas, TX 75275 USA.
   [Bellis, M.; Burchat, P. R.; Edwards, A. J.; Miyashita, T. S.] Stanford Univ, Stanford, CA 94305 USA.
   [Ahmed, S.; Alam, M. S.; Ernst, J. A.; Pan, B.; Saeed, M. A.; Zain, S. B.] SUNY Albany, Albany, NY 12222 USA.
   [Guttman, N.; Soffer, A.] Tel Aviv Univ, Sch Phys & Astron, IL-69978 Tel Aviv, Israel.
   [Lund, P.; Spanier, S. M.] Univ Tennessee, Knoxville, TN 37996 USA.
   [Eckmann, R.; Ritchie, J. L.; Ruland, A. M.; Schilling, C. J.; Schwitters, R. F.; Wray, B. C.] Univ Texas Austin, Austin, TX 78712 USA.
   [Izen, J. M.; Lou, X. C.] Univ Texas Dallas, Richardson, TX 75083 USA.
   [Bianchi, F.; Gamba, D.; Pelliccioni, M.] INFN, Sez Torino, I-10125 Turin, Italy.
   [Bianchi, F.; Gamba, D.; Pelliccioni, M.] Univ Turin, Dipartimento Fis Sperimentale, I-10125 Turin, Italy.
   [Bomben, M.; Lanceri, L.; Vitale, L.] INFN, Sez Trieste, I-34127 Trieste, Italy.
   [Bomben, M.; Lanceri, L.; Vitale, L.] Univ Trieste, Dipartimento Fis, I-34127 Trieste, Italy.
   [Lopez-March, N.; Martinez-Vidal, F.; Milanes, D. A.; Oyanguren, A.] Univ Valencia, CSIC, IFIC, E-46071 Valencia, Spain.
   [Albert, J.; Banerjee, Sw.; Choi, H. H. F.; Hamano, K.; King, G. J.; Kowalewski, R.; Lewczuk, M. J.; Nugent, I. M.; Roney, J. M.; Sobie, R. J.] Univ Victoria, Victoria, BC V8W 3P6, Canada.
   [Gershon, T. J.; Harrison, P. F.; Ilic, J.; Latham, T. E.; Puccio, E. M. T.] Univ Warwick, Dept Phys, Coventry CV4 7AL, W Midlands, England.
   [Band, H. R.; Chen, X.; Dasu, S.; Flood, K. T.; Pan, Y.; Prepost, R.; Vuosalo, C. O.; Wu, S. L.] Univ Wisconsin, Madison, WI 53706 USA.
   [Carpinelli, M.] Univ Sassari, I-07100 Sassari, Italy.
RP Sanchez, PD (reprint author), Univ Savoie, LAPP, CNRS, IN2P3, F-74941 Annecy Le Vieux, France.
RI Neri, Nicola/G-3991-2012; Calabrese, Roberto/G-4405-2015; Forti,
   Francesco/H-3035-2011; Rotondo, Marcello/I-6043-2012; de Sangro,
   Riccardo/J-2901-2012; Saeed, Mohammad Alam/J-7455-2012; Negrini,
   Matteo/C-8906-2014; Patrignani, Claudia/C-5223-2009; Monge, Maria
   Roberta/G-9127-2012; Oyanguren, Arantza/K-6454-2014; Luppi,
   Eleonora/A-4902-2015; White, Ryan/E-2979-2015; Martinez Vidal,
   F*/L-7563-2014; Kolomensky, Yury/I-3510-2015; Lo Vetere,
   Maurizio/J-5049-2012; Lusiani, Alberto/N-2976-2015; Morandin,
   Mauro/A-3308-2016; Lusiani, Alberto/A-3329-2016; Stracka,
   Simone/M-3931-2015; Di Lodovico, Francesca/L-9109-2016; Pappagallo,
   Marco/R-3305-2016; Calcaterra, Alessandro/P-5260-2015; Frey,
   Raymond/E-2830-2016
OI Neri, Nicola/0000-0002-6106-3756; Calabrese,
   Roberto/0000-0002-1354-5400; Forti, Francesco/0000-0001-6535-7965;
   Rotondo, Marcello/0000-0001-5704-6163; de Sangro,
   Riccardo/0000-0002-3808-5455; Saeed, Mohammad Alam/0000-0002-3529-9255;
   Negrini, Matteo/0000-0003-0101-6963; Patrignani,
   Claudia/0000-0002-5882-1747; Monge, Maria Roberta/0000-0003-1633-3195;
   Oyanguren, Arantza/0000-0002-8240-7300; Luppi,
   Eleonora/0000-0002-1072-5633; White, Ryan/0000-0003-3589-5900; Martinez
   Vidal, F*/0000-0001-6841-6035; Kolomensky, Yury/0000-0001-8496-9975; Lo
   Vetere, Maurizio/0000-0002-6520-4480; Lusiani,
   Alberto/0000-0002-6876-3288; Morandin, Mauro/0000-0003-4708-4240;
   Lusiani, Alberto/0000-0002-6876-3288; Stracka,
   Simone/0000-0003-0013-4714; Di Lodovico, Francesca/0000-0003-3952-2175;
   Pappagallo, Marco/0000-0001-7601-5602; Calcaterra,
   Alessandro/0000-0003-2670-4826; Frey, Raymond/0000-0003-0341-2636
FU DOE; NSF (USA); NSERC (Canada); CEA; CNRS-IN2P3 (France); BMBF; DFG
   (Germany); INFN (Italy); FOM (The Netherlands); NFR (Norway); MES
   (Russia); MEC (Spain); STFC (United Kingdom); Marie Curie EIF (European
   Union); A. P. Sloan Foundation
FX We are grateful for the excellent luminosity and machine conditions
   provided by our PEP-II colleagues and for the substantial dedicated
   effort from the computing organizations that support BABAR. The
   collaborating institutions thank SLAC for its support and kind
   hospitality. This work is supported by DOE and NSF (USA), NSERC
   (Canada), CEA and CNRS-IN2P3 (France), BMBF and DFG (Germany), INFN
   (Italy), FOM (The Netherlands), NFR (Norway), MES (Russia), MEC (Spain),
   and STFC (United Kingdom). Individuals have received support from the
   Marie Curie EIF (European Union) and the A. P. Sloan Foundation.
NR 24
TC 20
Z9 20
U1 1
U2 11
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2470-0010
EI 2470-0029
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 22
PY 2010
VL 82
IS 11
AR 111102
DI 10.1103/PhysRevD.82.111102
PG 7
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711HH
UT WOS:000286577200001
ER

PT J
AU Avakian, H
   Bosted, P
   Burkert, VD
   Elouadrhiri, L
   Adhikari, KP
   Aghasyan, M
   Amaryan, M
   Anghinolfi, M
   Baghdasaryan, H
   Ball, J
   Battaglieri, M
   Bedlinskiy, I
   Biselli, AS
   Branford, D
   Briscoe, WJ
   Brooks, W
   Carman, DS
   Casey, L
   Cole, PL
   Collins, P
   Crabb, D
   Crede, V
   D'Angelo, A
   Daniel, A
   Dashyan, N
   De Vita, R
   De Sanctis, E
   Deur, A
   Dey, B
   Dhamija, S
   Dickson, R
   Djalali, C
   Dodge, G
   Doughty, D
   Dupre, R
   El Alaoui, A
   Eugenio, P
   Fegan, S
   Fersch, R
   Forest, TA
   Fradi, A
   Gabrielyan, MY
   Gavalian, G
   Gevorgyan, N
   Gilfoyle, GP
   Giovanetti, KL
   Girod, FX
   Gohn, W
   Gothe, RW
   Griffioen, KA
   Guidal, M
   Guler, N
   Guo, L
   Hafidi, K
   Hakobyan, H
   Hanretty, C
   Hassall, N
   Heddle, D
   Hicks, K
   Holtrop, M
   Ilieva, Y
   Ireland, DG
   Isupov, EL
   Jawalkar, SS
   Jo, HS
   Joo, K
   Keller, D
   Khandaker, M
   Khetarpal, P
   Kim, W
   Klein, A
   Klein, FJ
   Konczykowski, P
   Kubarovsky, V
   Kuhn, SE
   Kuleshov, SV
   Kuznetsov, V
   Livingston, K
   Lu, HY
   Markov, N
   Mayer, M
   Martinez, D
   McAndrew, J
   McCracken, ME
   McKinnon, B
   Meyer, CA
   Mineeva, T
   Mirazita, M
   Mokeev, V
   Moreno, B
   Moriya, K
   Morrison, B
   Moutarde, H
   Munevar, E
   Nadel-Turonski, P
   Nasseripour, R
   Niccolai, S
   Niculescu, G
   Niculescu, I
   Niroula, MR
   Osipenko, M
   Ostrovidov, AI
   Paremuzyan, R
   Park, K
   Park, S
   Pasyuk, E
   Pereira, SA
   Perrin, Y
   Pisano, S
   Pogorelko, O
   Price, JW
   Procureur, S
   Prok, Y
   Protopopescu, D
   Raue, BA
   Ricco, G
   Ripani, M
   Rosner, G
   Rossi, P
   Sabatic, F
   Saini, MS
   Salamanca, J
   Salgado, C
   Schumacher, RA
   Seder, E
   Seraydaryan, H
   Sharabian, YG
   Sober, DI
   Sokhan, D
   Stepanyan, SS
   Stepanyan, S
   Stoler, P
   Strauch, S
   Suleiman, R
   Taiuti, M
   Tedeschi, DJ
   Tkachenko, S
   Ungaro, M
   Vernarsky, B
   Vineyard, MF
   Voutier, E
   Watts, DP
   Weinstein, LB
   Weygand, DP
   Wood, MH
   Zhang, J
   Zhao, B
   Zhao, ZW
AF Avakian, H.
   Bosted, P.
   Burkert, V. D.
   Elouadrhiri, L.
   Adhikari, K. P.
   Aghasyan, M.
   Amaryan, M.
   Anghinolfi, M.
   Baghdasaryan, H.
   Ball, J.
   Battaglieri, M.
   Bedlinskiy, I.
   Biselli, A. S.
   Branford, D.
   Briscoe, W. J.
   Brooks, W.
   Carman, D. S.
   Casey, L.
   Cole, P. L.
   Collins, P.
   Crabb, D.
   Crede, V.
   D'Angelo, A.
   Daniel, A.
   Dashyan, N.
   De Vita, R.
   De Sanctis, E.
   Deur, A.
   Dey, B.
   Dhamija, S.
   Dickson, R.
   Djalali, C.
   Dodge, G.
   Doughty, D.
   Dupre, R.
   El Alaoui, A.
   Eugenio, P.
   Fegan, S.
   Fersch, R.
   Forest, T. A.
   Fradi, A.
   Gabrielyan, M. Y.
   Gavalian, G.
   Gevorgyan, N.
   Gilfoyle, G. P.
   Giovanetti, K. L.
   Girod, F. X.
   Gohn, W.
   Gothe, R. W.
   Griffioen, K. A.
   Guidal, M.
   Guler, N.
   Guo, L.
   Hafidi, K.
   Hakobyan, H.
   Hanretty, C.
   Hassall, N.
   Heddle, D.
   Hicks, K.
   Holtrop, M.
   Ilieva, Y.
   Ireland, D. G.
   Isupov, E. L.
   Jawalkar, S. S.
   Jo, H. S.
   Joo, K.
   Keller, D.
   Khandaker, M.
   Khetarpal, P.
   Kim, W.
   Klein, A.
   Klein, F. J.
   Konczykowski, P.
   Kubarovsky, V.
   Kuhn, S. E.
   Kuleshov, S. V.
   Kuznetsov, V.
   Livingston, K.
   Lu, H. Y.
   Markov, N.
   Mayer, M.
   Martinez, D.
   McAndrew, J.
   McCracken, M. E.
   McKinnon, B.
   Meyer, C. A.
   Mineeva, T.
   Mirazita, M.
   Mokeev, V.
   Moreno, B.
   Moriya, K.
   Morrison, B.
   Moutarde, H.
   Munevar, E.
   Nadel-Turonski, P.
   Nasseripour, R.
   Niccolai, S.
   Niculescu, G.
   Niculescu, I.
   Niroula, M. R.
   Osipenko, M.
   Ostrovidov, A. I.
   Paremuzyan, R.
   Park, K.
   Park, S.
   Pasyuk, E.
   Pereira, S. Anefalos
   Perrin, Y.
   Pisano, S.
   Pogorelko, O.
   Price, J. W.
   Procureur, S.
   Prok, Y.
   Protopopescu, D.
   Raue, B. A.
   Ricco, G.
   Ripani, M.
   Rosner, G.
   Rossi, P.
   Sabatic, F.
   Saini, M. S.
   Salamanca, J.
   Salgado, C.
   Schumacher, R. A.
   Seder, E.
   Seraydaryan, H.
   Sharabian, Y. G.
   Sober, D. I.
   Sokhan, D.
   Stepanyan, S. S.
   Stepanyan, S.
   Stoler, P.
   Strauch, S.
   Suleiman, R.
   Taiuti, M.
   Tedeschi, D. J.
   Tkachenko, S.
   Ungaro, M.
   Vernarsky, B.
   Vineyard, M. F.
   Voutier, E.
   Watts, D. P.
   Weinstein, L. B.
   Weygand, D. P.
   Wood, M. H.
   Zhang, J.
   Zhao, B.
   Zhao, Z. W.
CA CLAS Collaboration
TI Measurement of Single- and Double-Spin Asymmetries in Deep Inelastic
   Pion Electroproduction with a Longitudinally Polarized Target
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID FINAL-STATE INTERACTIONS; TRANSVERSE-MOMENTUM; AZIMUTHAL ASYMMETRIES;
   DRELL-YAN; SCATTERING; DISTRIBUTIONS; QUARK; DEPENDENCE; CLAS; QCD
AB We report the first measurement of the transverse momentum dependence of double-spin asymmetries in semi-inclusive production of pions in deep-inelastic scattering off the longitudinally polarized proton. Data have been obtained using a polarized electron beam of 5.7 GeV with the CLAS detector at the Jefferson Lab (JLab). Modulations of single spin asymmetries over the azimuthal angle between lepton scattering and hadron production planes phi have been measured over a wide kinematic range in Bjorken x and virtual photon squared four-momentum Q(2). A significant nonzero sin2 phi single spin asymmetry was observed for the first time indicating strong spin-orbit correlations for transversely polarized quarks in the longitudinally polarized proton.
C1 [Avakian, H.; Bosted, P.; Burkert, V. D.; Elouadrhiri, L.; Brooks, W.; Carman, D. S.; Cole, P. L.; Deur, A.; Doughty, D.; Guo, L.; Heddle, D.; Joo, K.; Klein, F. J.; Kubarovsky, V.; Mokeev, V.; Nadel-Turonski, P.; Raue, B. A.; Sharabian, Y. G.; Stepanyan, S.; Weygand, D. P.] Thomas Jefferson Natl Accelerator Facil, Newport News, VA 23606 USA.
   [Dupre, R.; El Alaoui, A.; Hafidi, K.] Argonne Natl Lab, Argonne, IL 60441 USA.
   [Collins, P.; Morrison, B.; Pasyuk, E.] Arizona State Univ, Tempe, AZ 85287 USA.
   [Price, J. W.] Calif State Univ Dominguez Hills, Carson, CA 90747 USA.
   [Wood, M. H.] Canisius Coll, Buffalo, NY 14208 USA.
   [Dey, B.; Dickson, R.; McCracken, M. E.; Meyer, C. A.; Moriya, K.; Schumacher, R. A.; Vernarsky, B.] Carnegie Mellon Univ, Pittsburgh, PA 15213 USA.
   [Casey, L.; Klein, F. J.; Sober, D. I.] Catholic Univ Amer, Washington, DC 20064 USA.
   [Ball, J.; Girod, F. X.; Konczykowski, P.; Moreno, B.; Moutarde, H.; Procureur, S.; Sabatic, F.] CEA, Ctr Saclay, Irfu Serv Phys Nucl, F-91191 Gif Sur Yvette, France.
   [Doughty, D.; Heddle, D.; Stepanyan, S.] Christopher Newport Univ, Newport News, VA 23606 USA.
   [Gohn, W.; Joo, K.; Markov, N.; Mineeva, T.; Seder, E.; Ungaro, M.; Zhao, B.] Univ Connecticut, Storrs, CT 06269 USA.
   [Branford, D.; McAndrew, J.; Sokhan, D.; Watts, D. P.] Univ Edinburgh, Edinburgh EH9 3JZ, Midlothian, Scotland.
   [Biselli, A. S.] Fairfield Univ, Fairfield, CT 06824 USA.
   [Dhamija, S.; Gabrielyan, M. Y.; Raue, B. A.] Florida Int Univ, Miami, FL 33199 USA.
   [Crede, V.; Eugenio, P.; Hanretty, C.; Ostrovidov, A. I.; Park, S.; Saini, M. S.] Florida State Univ, Tallahassee, FL 32306 USA.
   [Briscoe, W. J.; Munevar, E.; Niculescu, I.] George Washington Univ, Washington, DC 20052 USA.
   [Cole, P. L.; Forest, T. A.; Mayer, M.; Martinez, D.; Salamanca, J.] Idaho State Univ, Pocatello, ID 83209 USA.
   [Aghasyan, M.; De Sanctis, E.; Mirazita, M.; Pereira, S. Anefalos; Rossi, P.] INFN, Lab Nazl Frascati, I-00044 Frascati, Italy.
   [Anghinolfi, M.; Battaglieri, M.; De Vita, R.; Osipenko, M.; Ricco, G.; Ripani, M.; Taiuti, M.] INFN, Sez Genova, I-16146 Genoa, Italy.
   [D'Angelo, A.] INFN, Sez Roma Tor Vergata, I-00133 Rome, Italy.
   [Fradi, A.; Guidal, M.; Jo, H. S.; Niccolai, S.; Pisano, S.] Inst Phys Nucl ORSAY, Orsay, France.
   [Bedlinskiy, I.; Kuleshov, S. V.; Pogorelko, O.] Inst Theoret & Expt Phys, Moscow 117259, Russia.
   [Giovanetti, K. L.; Niculescu, G.; Niculescu, I.] James Madison Univ, Harrisonburg, VA 22807 USA.
   [Kim, W.; Kuznetsov, V.; Park, K.; Stepanyan, S. S.] Kyungpook Natl Univ, Taegu 702701, South Korea.
   [Perrin, Y.; Voutier, E.] Univ Grenoble 1, CNRS, IN2P3, LPSC,INPG, Grenoble, France.
   [Suleiman, R.] MIT, Cambridge, MA 02139 USA.
   [Holtrop, M.] Univ New Hampshire, Durham, NH 03824 USA.
   [Khandaker, M.; Salgado, C.] Norfolk State Univ, Norfolk, VA 23504 USA.
   [Daniel, A.; Hicks, K.; Keller, D.; Niculescu, G.] Ohio Univ, Athens, OH 45701 USA.
   [Adhikari, K. P.; Amaryan, M.; Dodge, G.; Forest, T. A.; Gavalian, G.; Guler, N.; Klein, A.; Kuhn, S. E.; Mayer, M.; Martinez, D.; Niroula, M. R.; Sabatic, F.; Seraydaryan, H.; Tkachenko, S.; Weinstein, L. B.; Zhang, J.] Old Dominion Univ, Norfolk, VA 23529 USA.
   [Biselli, A. S.; Khetarpal, P.; Stoler, P.] Rensselaer Polytech Inst, Troy, NY 12180 USA.
   [Gilfoyle, G. P.; Vineyard, M. F.] Univ Richmond, Richmond, VA 23173 USA.
   [D'Angelo, A.] Univ Roma Tor Vergata, I-00133 Rome, Italy.
   [Isupov, E. L.; Mokeev, V.] Skobeltsyn Nucl Phys Inst, Moscow 119899, Russia.
   [Djalali, C.; Gothe, R. W.; Ilieva, Y.; Lu, H. Y.; Nasseripour, R.; Park, K.; Strauch, S.; Tedeschi, D. J.; Zhao, Z. W.] Univ S Carolina, Columbia, SC 29208 USA.
   [Vineyard, M. F.] Union Coll, Schenectady, NY 12308 USA.
   [Hakobyan, H.; Joo, K.; Kuleshov, S. V.] Univ Tecn Federico Santa Maria, Valparaiso, Chile.
   [Fegan, S.; Hassall, N.; Ireland, D. G.; Livingston, K.; McKinnon, B.; Protopopescu, D.; Rosner, G.] Univ Glasgow, Glasgow G12 8QQ, Lanark, Scotland.
   [Baghdasaryan, H.; Crabb, D.; Prok, Y.] Univ Virginia, Charlottesville, VA 22901 USA.
   [Fersch, R.; Griffioen, K. A.; Jawalkar, S. S.] Coll William & Mary, Williamsburg, VA 23187 USA.
   [Dashyan, N.; Gevorgyan, N.; Hakobyan, H.; Paremuzyan, R.; Sharabian, Y. G.; Stepanyan, S.] Yerevan Phys Inst, Yerevan 375036, Armenia.
RP Avakian, H (reprint author), Thomas Jefferson Natl Accelerator Facil, Newport News, VA 23606 USA.
RI Osipenko, Mikhail/N-8292-2015; Zhang, Jixie/A-1461-2016; Meyer,
   Curtis/L-3488-2014; El Alaoui, Ahmed/B-4638-2015; Ireland,
   David/E-8618-2010; Lu, Haiyun/B-4083-2012; Protopopescu,
   Dan/D-5645-2012; Isupov, Evgeny/J-2976-2012; Zhao, Bo/J-6819-2012;
   Brooks, William/C-8636-2013; Sabatie, Franck/K-9066-2015; Kuleshov,
   Sergey/D-9940-2013; Schumacher, Reinhard/K-6455-2013; D'Angelo,
   Annalisa/A-2439-2012
OI Osipenko, Mikhail/0000-0001-9618-3013; Meyer,
   Curtis/0000-0001-7599-3973; Ireland, David/0000-0001-7713-7011; Zhao,
   Bo/0000-0003-3171-5335; Brooks, William/0000-0001-6161-3570; Sabatie,
   Franck/0000-0001-7031-3975; Kuleshov, Sergey/0000-0002-3065-326X;
   Schumacher, Reinhard/0000-0002-3860-1827; D'Angelo,
   Annalisa/0000-0003-3050-4907
FU U.S. Department of Energy; National Science Foundation; Italian Istituto
   Nazionale di Fisica Nucleare; French Centre National de la Recherche
   Scientifique; French Commissariat a l'Energie Atomique; National
   Research Foundation of Korea; United States Department of Energy
   [DE-AC05-06OR23177]
FX We thank A. Afanasev, S. Brodsky, A. Kotzinian, and P. Schweitzer for
   stimulating discussions. We would like to acknowledge the outstanding
   efforts of the staff of the Accelerator and the Physics Divisions at
   JLab that made this experiment possible. This work was supported in part
   by the U.S. Department of Energy and the National Science Foundation,
   the Italian Istituto Nazionale di Fisica Nucleare, the French Centre
   National de la Recherche Scientifique, the French Commissariat a
   l'Energie Atomique, and the National Research Foundation of Korea. The
   Southeastern Universities Research Association (SURA) operates the
   Thomas Jefferson National Accelerator Facility for the United States
   Department of Energy under Contract No. DE-AC05-06OR23177.
NR 48
TC 49
Z9 49
U1 1
U2 6
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 22
PY 2010
VL 105
IS 26
AR 262002
DI 10.1103/PhysRevLett.105.262002
PG 5
WC Physics, Multidisciplinary
SC Physics
GA 713SD
UT WOS:000286756800006
PM 21231647
ER

PT J
AU Jiang, YH
   Rudenko, A
   Herrwerth, O
   Foucar, L
   Kurka, M
   Kuhnel, KU
   Lezius, M
   Kling, MF
   van Tilborg, J
   Belkacem, A
   Ueda, K
   Dusterer, S
   Treusch, R
   Schroter, CD
   Moshammer, R
   Ullrich, J
AF Jiang, Y. H.
   Rudenko, A.
   Herrwerth, O.
   Foucar, L.
   Kurka, M.
   Kuehnel, K. U.
   Lezius, M.
   Kling, M. F.
   van Tilborg, J.
   Belkacem, A.
   Ueda, K.
   Duesterer, S.
   Treusch, R.
   Schroeter, C. D.
   Moshammer, R.
   Ullrich, J.
TI Ultrafast Extreme Ultraviolet Induced Isomerization of Acetylene Cations
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID FREE-ELECTRON LASER; MOLECULAR-IONS; PHOTOIONIZATION; DISSOCIATION;
   SPECTROSCOPY; VINYLIDENE; DYNAMICS; DICATION; ENERGY; STATES
AB Ultrafast isomerization of acetylene cations (inverted right perpendicular HC = CH inverted left perpendicular(+)) in the low-lying excited A(2)Sigma(+)(g) state, populated by the absorption of extreme ultraviolet (XUV) photons (38 eV), has been observed at the Free Electron Laser in Hamburg, (FLASH). Recording coincident fragments C(+) + CH(2)(+) as a function of time between XUV-pump and -probe pulses, generated by a split-mirror device, we find an isomerization time of 52 +/- 15 fs in a kinetic energy release (KER) window of 5.8 < KER < 8 eV, providing clear evidence for the existence of a fast, nonradiative decay channel.
C1 [Jiang, Y. H.; Kurka, M.; Kuehnel, K. U.; Schroeter, C. D.; Moshammer, R.; Ullrich, J.] Max Planck Inst Kernphys, D-69117 Heidelberg, Germany.
   [Rudenko, A.; Foucar, L.; Ullrich, J.] CFEL, Max Planck Adv Study Grp, D-22607 Hamburg, Germany.
   [Herrwerth, O.; Lezius, M.; Kling, M. F.] Max Planck Inst Quantum Opt, D-85748 Garching, Germany.
   [van Tilborg, J.; Belkacem, A.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Ueda, K.] Tohoku Univ, Inst Multidisciplinary Res Adv Mat, Sendai, Miyagi 9808577, Japan.
   [Duesterer, S.; Treusch, R.] DESY, D-22607 Hamburg, Germany.
RP Jiang, YH (reprint author), Max Planck Inst Kernphys, D-69117 Heidelberg, Germany.
RI Rudenko, Artem/C-7412-2009; Kling, Matthias/D-3742-2014; Treusch,
   Rolf/C-3935-2015; 
OI Rudenko, Artem/0000-0002-9154-8463; Treusch, Rolf/0000-0001-8479-8862
FU Max-Planck Advanced Study Group at CFEL; DFG [JI 110/2]; Cluster of
   Excellence: Munich Center for Advanced Photonics
FX The authors are greatly indebted to the scientific and technical team at
   FLASH. Support from the Max-Planck Advanced Study Group at CFEL is
   gratefully acknowledged. Y.H.J. acknowledges support from DFG Project
   No. JI 110/2, O. H., M. L., and M. F. K. from the DFG via the
   Emmy-Noether program and the Cluster of Excellence: Munich Center for
   Advanced Photonics.
NR 26
TC 77
Z9 78
U1 3
U2 50
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 22
PY 2010
VL 105
IS 26
AR 263002
DI 10.1103/PhysRevLett.105.263002
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713SD
UT WOS:000286756800008
PM 21231652
ER

PT J
AU Close, S
   Colestock, P
   Cox, L
   Kelley, M
   Lee, N
AF Close, S.
   Colestock, P.
   Cox, L.
   Kelley, M.
   Lee, N.
TI Electromagnetic pulses generated by meteoroid impacts on spacecraft
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID PLASMA; DEBRIS
AB Meteoroid impacts on spacecraft are known to cause mechanical damage, but their electrical effect on spacecraft systems are not well characterized. Several reported spacecraft anomalies are suggestive of an electrical failure associated with meteoroid impact. We present a theory to explain plasma production and subsequent electric fields occurring when a meteoroid strikes a spacecraft, ionizing itself and part of the spacecraft. This plasma, with a charge separation commensurate with different specie mobilities, can produce a strong electromagnetic pulse (EMP) at broad frequency spectra, potentially causing catastrophic damage if the impact is relatively near an area with low shielding or an open umbilical. Anomalies such as gyrostability loss can be caused by an EMP without any detectable momentum transfer due to small (<1 mu g) particle mass. Subsequent plasma oscillations can also emit significant power and may be responsible for many reported satellite anomalies. The presented theory discusses both a dust-free plasma expansion with coherent electron oscillation and a dusty plasma expansion with macroscopic charge separation.
C1 [Close, S.; Lee, N.] Stanford Univ, Dept Aeronaut & Astronaut, Stanford, CA 94305 USA.
   [Colestock, P.; Cox, L.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Kelley, M.] Cornell Univ, Sch Elect & Comp Engn, Ithaca, NY 14853 USA.
RP Close, S (reprint author), Stanford Univ, Dept Aeronaut & Astronaut, 496 Lomita Mall, Stanford, CA 94305 USA.
EM sigridc@stanford.edu
OI Lee, Nicolas/0000-0001-5500-1324
NR 20
TC 27
Z9 27
U1 1
U2 3
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0148-0227
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 21
PY 2010
VL 115
AR A12328
DI 10.1029/2010JA015921
PG 7
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 699BQ
UT WOS:000285639300013
ER

PT J
AU Szarko, JM
   Guo, JC
   Liang, YY
   Lee, B
   Rolczynski, BS
   Strzalka, J
   Xu, T
   Loser, S
   Marks, TJ
   Yu, LP
   Chen, LX
AF Szarko, Jodi M.
   Guo, Jianchang
   Liang, Yongye
   Lee, Byeongdu
   Rolczynski, Brian S.
   Strzalka, Joseph
   Xu, Tao
   Loser, Stephen
   Marks, Tobin J.
   Yu, Luping
   Chen, Lin X.
TI When Function Follows Form: Effects of Donor Copolymer Side Chains on
   Film Morphology and BHJ Solar Cell Performance
SO ADVANCED MATERIALS
LA English
DT Article
ID POWER CONVERSION EFFICIENCY; ORGANIC PHOTOVOLTAIC CELLS; INTERFACIAL
   LAYER; POLYMERS; TRANSPORT; OXIDE
AB Detailed structural organization in organic films are investigated using grazing incidence X-ray scattering (GIXS) methods. The key structural features are revealed and the influence of specific side chain positions and shapes are characterized. A correlation between the fill factor (FF) of the corresponding device and the tightness of the polymer chain stacking inspires a new set of structural parameters for design of materials to optimize device efficiency.
   [GRAPHICS]
   .
C1 [Szarko, Jodi M.; Rolczynski, Brian S.; Loser, Stephen; Marks, Tobin J.; Chen, Lin X.] Northwestern Univ, Dept Chem, Evanston, IL 60208 USA.
   [Szarko, Jodi M.; Guo, Jianchang; Rolczynski, Brian S.; Chen, Lin X.] Argonne Natl Lab, Chem Sci & Engn Div, Argonne, IL 60439 USA.
   [Szarko, Jodi M.; Guo, Jianchang; Rolczynski, Brian S.; Loser, Stephen; Marks, Tobin J.; Chen, Lin X.] Northwestern Univ, Argonne NW Solar Energy Res ANSER Ctr, Evanston, IL 60208 USA.
   [Guo, Jianchang; Liang, Yongye; Xu, Tao; Yu, Luping] Univ Chicago, Dept Chem, Chicago, IL 60637 USA.
   [Guo, Jianchang; Liang, Yongye; Xu, Tao; Yu, Luping] Univ Chicago, James Franck Inst, Chicago, IL 60637 USA.
   [Lee, Byeongdu; Strzalka, Joseph] Argonne Natl Lab, Xray Sci Div, Argonne, IL 60439 USA.
RP Marks, TJ (reprint author), Northwestern Univ, Dept Chem, 2145 Sheridan Rd, Evanston, IL 60208 USA.
EM t-marks@northwestern.edu; lupingyu@uchicago.edu; lchen@anl.gov
RI Liang, Yongye/D-1099-2010; Yang, Zengchao/H-3884-2011; Liang,
   Yongye/D-9275-2012; 
OI Szarko, Jodi/0000-0002-2181-9408; Lee, Byeongdu/0000-0003-2514-8805
FU U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences [DE-SC0001059]; Division of Chemical Sciences, Office of Basic
   Energy Sciences, the U.S. Department of Energy [DE-AC02-06CH11357];
   National Science Foundation; AFOSR
FX This research is supported by the ANSER Center, an Energy Frontier
   Research Center funded by the U.S. Department of Energy, Office of
   Science, Office of Basic Energy Sciences, under Award Number
   DE-SC0001059, and the Division of Chemical Sciences, Office of Basic
   Energy Sciences, the U.S. Department of Energy under contract
   DE-AC02-06CH11357 (for L. X. C.). The synthesis of polymers is also
   supported by the National Science Foundation, AFOSR, and the NSF MRSEC
   program at the University of Chicago (L.Y.). The authors would also like
   to thank Sonke Seifert for help with the X-ray scattering experiments.
NR 28
TC 223
Z9 223
U1 8
U2 106
PU WILEY-BLACKWELL
PI MALDEN
PA COMMERCE PLACE, 350 MAIN ST, MALDEN 02148, MA USA
SN 0935-9648
J9 ADV MATER
JI Adv. Mater.
PD DEC 21
PY 2010
VL 22
IS 48
BP 5468
EP 5472
DI 10.1002/adma.201002687
PG 5
WC Chemistry, Multidisciplinary; Chemistry, Physical; Nanoscience &
   Nanotechnology; Materials Science, Multidisciplinary; Physics, Applied;
   Physics, Condensed Matter
SC Chemistry; Science & Technology - Other Topics; Materials Science;
   Physics
GA 695UF
UT WOS:000285397400004
PM 21089063
ER

PT J
AU Antezana, E
   Venkatesan, A
   Mungall, C
   Mironov, V
   Kuiper, M
AF Antezana, Erick
   Venkatesan, Aravind
   Mungall, Chris
   Mironov, Vladimir
   Kuiper, Martin
TI ONTO-ToolKit: enabling bio-ontology engineering via Galaxy
SO BMC BIOINFORMATICS
LA English
DT Article; Proceedings Paper
CT 11th Annual Bioinformatics Open Source Conference (BOSC)
CY JUL 09-10, 2010
CL Boston, MA
ID DATA INTEGRATION; BIOINFORMATICS; BIOLOGY
AB Background: The biosciences increasingly face the challenge of integrating a wide variety of available data, information and knowledge in order to gain an understanding of biological systems. Data integration is supported by a diverse series of tools, but the lack of a consistent terminology to label these data still presents significant hurdles. As a consequence, much of the available biological data remains disconnected or worse: becomes misconnected. The need to address this terminology problem has spawned the building of a large number of bio-ontologies. OBOF, RDF and OWL are among the most used ontology formats to capture terms and relationships in the Life Sciences, opening the potential to use the Semantic Web to support data integration and further exploitation of integrated resources via automated retrieval and reasoning procedures.
   Methods: We extended the Perl suite ONTO-PERL and functionally integrated it into the Galaxy platform. The resulting ONTO-ToolKit supports the analysis and handling of OBO-formatted ontologies via the Galaxy interface, and we demonstrated its functionality in different use cases that illustrate the flexibility to obtain sets of ontology terms that match specific search criteria.
   Results: ONTO-ToolKit is available as a tool suite for Galaxy. Galaxy not only provides a user friendly interface allowing the interested biologist to manipulate OBO ontologies, it also opens up the possibility to perform further biological (and ontological) analyses by using other tools available within the Galaxy environment. Moreover, it provides tools to translate OBO-formatted ontologies into Semantic Web formats such as RDF and OWL.
   Conclusions: ONTO-ToolKit reaches out to researchers in the biosciences, by providing a user-friendly way to analyse and manipulate ontologies. This type of functionality will become increasingly important given the wealth of information that is becoming available based on ontologies.
C1 [Antezana, Erick; Venkatesan, Aravind; Mironov, Vladimir; Kuiper, Martin] Norwegian Univ Sci & Technol NTNU, Dept Biol, N-7491 Trondheim, Norway.
   [Mungall, Chris] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
RP Antezana, E (reprint author), Norwegian Univ Sci & Technol NTNU, Dept Biol, Hogskoleringen 5, N-7491 Trondheim, Norway.
EM erick.antezana@bio.ntnu.no
OI Antezana, Erick/0000-0002-2497-8236; Kuiper, Martin/0000-0002-1171-9876
NR 23
TC 2
Z9 2
U1 1
U2 3
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2105
J9 BMC BIOINFORMATICS
JI BMC Bioinformatics
PD DEC 21
PY 2010
VL 11
SU 12
AR S8
DI 10.1186/1471-2105-11-S12-S8
PG 9
WC Biochemical Research Methods; Biotechnology & Applied Microbiology;
   Mathematical & Computational Biology
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
   Mathematical & Computational Biology
GA 759DA
UT WOS:000290219600008
PM 21210987
ER

PT J
AU Taylor, RC
AF Taylor, Ronald C.
TI An overview of the Hadoop/MapReduce/HBase framework and its current
   applications in bioinformatics
SO BMC BIOINFORMATICS
LA English
DT Article; Proceedings Paper
CT 11th Annual Bioinformatics Open Source Conference (BOSC)
CY JUL 09-10, 2010
CL Boston, MA
ID CLOUD; MAPREDUCE
AB Background: Bioinformatics researchers are now confronted with analysis of ultra large-scale data sets, a problem that will only increase at an alarming rate in coming years. Recent developments in open source software, that is, the Hadoop project and associated software, provide a foundation for scaling to petabyte scale data warehouses on Linux clusters, providing fault-tolerant parallelized analysis on such data using a programming style named MapReduce.
   Description: An overview is given of the current usage within the bioinformatics community of Hadoop, a top-level Apache Software Foundation project, and of associated open source software projects. The concepts behind Hadoop and the associated HBase project are defined, and current bioinformatics software that employ Hadoop is described. The focus is on next-generation sequencing, as the leading application area to date.
   Conclusions: Hadoop and the MapReduce programming paradigm already have a substantial base in the bioinformatics community, especially in the field of next-generation sequencing analysis, and such use is increasing. This is due to the cost-effectiveness of Hadoop-based analysis on commodity Linux clusters, and in the cloud via data upload to cloud vendors who have implemented Hadoop/HBase; and due to the effectiveness and ease-of-use of the MapReduce method in parallelization of many data analysis algorithms.
C1 Pacific NW Natl Lab, Computat Biol & Bioinformat Grp, Richland, WA 99352 USA.
RP Taylor, RC (reprint author), Pacific NW Natl Lab, Computat Biol & Bioinformat Grp, Richland, WA 99352 USA.
EM ronald.taylor@pnl.gov
OI Taylor, Ronald/0000-0001-9777-9767
NR 42
TC 112
Z9 122
U1 13
U2 147
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2105
J9 BMC BIOINFORMATICS
JI BMC Bioinformatics
PD DEC 21
PY 2010
VL 11
SU 12
AR S1
DI 10.1186/1471-2105-11-S12-S1
PG 6
WC Biochemical Research Methods; Biotechnology & Applied Microbiology;
   Mathematical & Computational Biology
SC Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology;
   Mathematical & Computational Biology
GA 759DA
UT WOS:000290219600001
PM 21210976
ER

PT J
AU Dong, X
   Horn, B
   Silverstein, E
   Torroba, G
AF Dong, Xi
   Horn, Bart
   Silverstein, Eva
   Torroba, Gonzalo
TI Micromanaging de Sitter holography
SO CLASSICAL AND QUANTUM GRAVITY
LA English
DT Article
ID FLUX COMPACTIFICATIONS; STRING THEORY; COSMOLOGICAL CONSTANT
AB We develop tools to engineer de Sitter vacua with semi-holographic duals, using elliptic fibrations and orientifolds to uplift Freund-Rubin compactifications with CFT duals. The dual brane construction is compact and constitutes a microscopic realization of the dS/dS correspondence, realizing d-dimensional de Sitter space as a warped compactification down to (d - 1)-dimensional de Sitter gravity coupled to a pair of large-N matter sectors. This provides a parametric microscopic interpretation of the Gibbons-Hawking entropy. We illustrate these ideas with an explicit class of examples in three dimensions, and describe ongoing work on four-dimensional constructions.
C1 [Dong, Xi; Horn, Bart; Silverstein, Eva; Torroba, Gonzalo] Univ Calif Santa Barbara, Kavli Inst Theoret Phys, Santa Barbara, CA 93106 USA.
   [Dong, Xi; Horn, Bart; Silverstein, Eva; Torroba, Gonzalo] Univ Calif Santa Barbara, Dept Phys, Santa Barbara, CA 93106 USA.
   [Dong, Xi; Horn, Bart; Silverstein, Eva; Torroba, Gonzalo] Stanford Univ, SLAC, Stanford, CA 94305 USA.
   [Dong, Xi; Horn, Bart; Silverstein, Eva; Torroba, Gonzalo] Stanford Univ, Dept Phys, Stanford, CA 94305 USA.
RP Dong, X (reprint author), Univ Calif Santa Barbara, Kavli Inst Theoret Phys, Santa Barbara, CA 93106 USA.
EM xidong@stanford.edu; bhorn@stanford.edu; evas@stanford.edu;
   torrobag@slac.stanford.edu
FU National Science Foundation [PHY05-51164]; UCSB Department of Physics;
   DOE [DE-AC03-76SF00515]; William K Bowes Jr Stanford Graduate Fellowship
FX We are grateful to Joe Polchinski for many interesting discussions and
   comments on a draft. We would also like to thank M Douglas, D Morrison
   and S Shenker for extensive discussions of various aspects of this work,
   and R Flauger, B Freivogel, S Kachru, R Kallosh, L Susskind, D Tong and
   E Witten for useful comments. This work was supported by the National
   Science Foundation under grant PHY05-51164, the UCSB Department of
   Physics, the DOE under contract DE-AC03-76SF00515 and by a William K
   Bowes Jr Stanford Graduate Fellowship.
NR 62
TC 37
Z9 37
U1 0
U2 2
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 0264-9381
J9 CLASSICAL QUANT GRAV
JI Class. Quantum Gravity
PD DEC 21
PY 2010
VL 27
IS 24
AR 245020
DI 10.1088/0264-9381/27/24/245020
PG 28
WC Astronomy & Astrophysics; Physics, Multidisciplinary; Physics, Particles
   & Fields
SC Astronomy & Astrophysics; Physics
GA 688DG
UT WOS:000284829400020
ER

PT J
AU Cho, J
   Berbil-Bautista, L
   Levy, N
   Poulsen, D
   Frechet, JMJ
   Crommie, MF
AF Cho, Jongweon
   Berbil-Bautista, L.
   Levy, Niv
   Poulsen, Daniel
   Frechet, Jean M. J.
   Crommie, Michael F.
TI Functionalization, self-assembly, and photoswitching quenching for
   azobenzene derivatives adsorbed on Au(111)
SO JOURNAL OF CHEMICAL PHYSICS
LA English
DT Article
ID CONTROLLED SIZE; SURFACES; MOLECULE; LIGHT; NANOSTRUCTURES;
   ISOMERIZATION; SHAPE
AB We have used scanning tunneling microscopy to investigate the structure and photoswitching behavior of azobenzene molecules functionalized with bulky spacer groups and adsorbed onto Au(111). We find that positioning tert-butyl "legs" in a canted arrangement on the azobenzene phenyl rings quenches photoisomerizability of the molecule on Au(111). Addition of cyano groups at the para positions changes the molecular self-assembly significantly, but does not alter the quenched photoisomerizability. This behavior likely arises from a combination of molecule-surface interactions, molecule-molecule interactions, and alteration of azobenzene electronic structure resulting from the position-specific addition of tert-butyl groups. (c) 2010 American Institute of Physics. [doi:10.1063/1.3519557]
C1 [Cho, Jongweon; Berbil-Bautista, L.; Levy, Niv; Crommie, Michael F.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Cho, Jongweon; Crommie, Michael F.] Univ Calif Berkeley, Ctr Integrated Nanomech Syst, Berkeley, CA 94720 USA.
   [Berbil-Bautista, L.; Levy, Niv; Poulsen, Daniel; Frechet, Jean M. J.; Crommie, Michael F.] Lawrence Berkeley Natl Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Poulsen, Daniel; Frechet, Jean M. J.] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
RP Crommie, MF (reprint author), Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
EM crommie@socrates.berkeley.edu
RI Cho, Jongweon/F-3704-2011; 
OI Frechet, Jean /0000-0001-6419-0163
FU Office of Science, Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering Division, U.S. Department of Energy
   [DE-AC03-76SF0098]; National Science Foundation within the Center of
   Integrated Nanomechanical Systems [EEC-0425941]
FX We are grateful to M. J. Comstock for helpful discussions. Molecular
   synthesis and STM measurements were supported by the Director, Office of
   Science, Office of Basic Energy Sciences, Division of Materials Sciences
   and Engineering Division, U.S. Department of Energy under Contract No.
   DE-AC03-76SF0098; STM data analysis was supported by the National
   Science Foundation within the Center of Integrated Nanomechanical
   Systems, under Grant No. EEC-0425941.
NR 20
TC 9
Z9 9
U1 1
U2 13
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0021-9606
J9 J CHEM PHYS
JI J. Chem. Phys.
PD DEC 21
PY 2010
VL 133
IS 23
AR 234707
DI 10.1063/1.3519557
PG 4
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 697NG
UT WOS:000285519700038
PM 21186884
ER

PT J
AU Fernandez, CA
   Nune, SK
   Motkuri, RK
   Thallapally, PK
   Wang, CM
   Liu, J
   Exarhos, GJ
   McGrail, BP
AF Fernandez, Carlos A.
   Nune, Satish K.
   Motkuri, Radha Kishan
   Thallapally, Praveen K.
   Wang, Chongmin
   Liu, Jun
   Exarhos, Gregory J.
   McGrail, B. Peter
TI Synthesis, Characterization, and Application of Metal Organic Framework
   Nanostructures
SO LANGMUIR
LA English
DT Article
ID PRUSSIAN BLUE NANOPARTICLES; HYDROGEN STORAGE; ADSORPTION; ANALOGS; CO;
   IMMOBILIZATION; NANOCRYSTALS; CRYSTALS; SO2; ZN
AB The considerable number of important physical properties, including optical, electronic, and magnetic properties, of Prussian blue (PB) analogues have attracted fundamental and industrial interest. Nevertheless, the gas sorption properties of PB coordination compounds were only investigated very recently. In this work, we report the synthesis and gas sorption properties of PB nanocomposites with different size and shape obtained by using poly(vinylpyrrolidone) (PVP), chitosan, and dioctyl sodium sulfosuccinate (AOT) as stabilizers and structure directing agents. All three porous nanocrystals show high and selective CO(2) adsorption over CH(4) or N(2). No distinct relationship was found between the size (or shape) of the nanosorbents and their gas uptake capacities. To our knowledge, this is the first report on the use of PB nanocomposites for CO(2) capture applications.
C1 [Fernandez, Carlos A.; Nune, Satish K.; Motkuri, Radha Kishan; Thallapally, Praveen K.; McGrail, B. Peter] Pacific NW Natl Lab, Energy & Environm Directorate, Richland, WA 99352 USA.
   [Wang, Chongmin] Pacific NW Natl Lab, WR Wiley Environm Mol Sci Lab, Richland, WA 99352 USA.
   [Liu, Jun; Exarhos, Gregory J.] Pacific NW Natl Lab, Fundamental & Computat Sci Directorate, Richland, WA 99352 USA.
RP Thallapally, PK (reprint author), Pacific NW Natl Lab, Energy & Environm Directorate, Richland, WA 99352 USA.
EM Praveen.Thallapally@pnl.gov
RI Motkuri, Radha/F-1041-2014; thallapally, praveen/I-5026-2014
OI Motkuri, Radha/0000-0002-2079-4798; thallapally,
   praveen/0000-0001-7814-4467
FU U.S. Department of Energy, Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering [KC020105-FWP12152]; U.S. Department
   of Energy, Office of Fossil Energy; U.S. Department of Energy
   [DE-AC05-76RL01830]
FX Synthesis and characterization were supported by the U.S. Department of
   Energy, Office of Basic Energy Sciences, Division of Materials Sciences
   and Engineering under Award KC020105-FWP12152. In addition, portions of
   the work (gas sorption measurements) were supported by the U.S.
   Department of Energy, Office of Fossil Energy. The Pacific Northwest
   National Laboratory is operated by Battelle for the U.S. Department of
   Energy under Contract DE-AC05-76RL01830.
NR 33
TC 15
Z9 15
U1 5
U2 64
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0743-7463
J9 LANGMUIR
JI Langmuir
PD DEC 21
PY 2010
VL 26
IS 24
BP 18591
EP 18594
DI 10.1021/la103590t
PG 4
WC Chemistry, Multidisciplinary; Chemistry, Physical; Materials Science,
   Multidisciplinary
SC Chemistry; Materials Science
GA 693IL
UT WOS:000285217700002
PM 20958058
ER

PT J
AU Ciftlikli, EZ
   Lee, EYM
   Lallo, J
   Rangan, S
   Senanayake, SD
   Hinch, BJ
AF Ciftlikli, Erkan Z.
   Lee, Everett Y. M.
   Lallo, James
   Rangan, Sylvie
   Senanayake, Sanjaya D.
   Hinch, B. J.
TI Implementation of New TPD Analysis Techniques in the Evaluation of
   Second Order Desorption Kinetics of Cyanogen from Cu(001)
SO LANGMUIR
LA English
DT Article
ID TEMPERATURE-PROGRAMMED DESORPTION; THERMAL-DESORPTION; METAL-SURFACES;
   ADSORPTION; CN; CHLORINE; CU(100); PT(111)
AB The interactions of cyanide species with a copper (001) surface were studied with temperature programmed desorption (TPD) and X-ray photoelectron spectroscopy (XPS). Adsorbed cyanide species (CN((a))) undergo recombinative desorption evolving molecular cyanogen (C(2)N(2)). As the adsorbed CN species charge upon adsorption, mutually repulsive dipolar interactions lead to a marked desorption energy reduction with increasing CN((a)) coverages. Two new TPD analysis approaches were developed, which used only accurately discernible observables and which do not assume constant desorption energies, E(d), and pre-exponential values, v. These two approaches demonstrated a linear variation of E(d) with instantaneous coverage. The first approach involved an analysis of the variations of desorption peak asymmetry with initial CN coverages. The second quantitative approach utilized only temperatures and intensities of TPD peaks, together with deduced surface coverages at the peak maxima, also as a function of initial surface coverages. Parameters derived from the latter approach were utilized as initial inputs for a comprehensive curve fit analysis technique. Excellent fits for all experimental desorption curves were produced in simulations. The curve fit analysis confirms that the activation energy of desorption of 170-180 kJ/mol at low coverage decreases by up to 14-15 kJ/mol at CN saturation.
C1 [Ciftlikli, Erkan Z.; Lee, Everett Y. M.; Lallo, James; Hinch, B. J.] Rutgers State Univ, Dept Chem & Chem Biol, Piscataway, NJ 08854 USA.
   [Rangan, Sylvie] Rutgers State Univ, Dept Phys & Astron, Piscataway, NJ 08854 USA.
   [Senanayake, Sanjaya D.] Brookhaven Natl Lab, Dept Chem, Upton, NY 11973 USA.
RP Hinch, BJ (reprint author), Rutgers State Univ, Dept Chem & Chem Biol, 610 Taylor Rd, Piscataway, NJ 08854 USA.
EM jhinch@rutchem.rutgers.edu
RI Rangan, Sylvie/H-6522-2013; Senanayake, Sanjaya/D-4769-2009
OI Senanayake, Sanjaya/0000-0003-3991-4232
FU NSF [CHE-0718055]; Division of Chemical Sciences, Geosciences, and
   Biosciences, Office of Basic Energy Sciences, U.S. Department of Energy
   with Oak Ridge National Laboratory [DE-AC05-00OR22725]; U.S. Department
   of Energy, Office of Science, Office of Basic Energy Sciences
   [DE-AC02-98CH10886]
FX The work was supported by the NSF, CHE-0718055. The U12a beamline and
   S.D.S. have been supported by the Division of Chemical Sciences,
   Geosciences, and Biosciences, Office of Basic Energy Sciences, U.S.
   Department of Energy, under Contract DE-AC05-00OR22725 with Oak Ridge
   National Laboratory. The National Synchrotron Light Source, Brookhaven
   National Laboratory, was supported by the U.S. Department of Energy,
   Office of Science, Office of Basic Energy Sciences, under Contract No.
   DE-AC02-98CH10886.
NR 26
TC 2
Z9 2
U1 0
U2 9
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0743-7463
J9 LANGMUIR
JI Langmuir
PD DEC 21
PY 2010
VL 26
IS 24
BP 18742
EP 18749
DI 10.1021/la102304m
PG 8
WC Chemistry, Multidisciplinary; Chemistry, Physical; Materials Science,
   Multidisciplinary
SC Chemistry; Materials Science
GA 693IL
UT WOS:000285217700027
PM 21090656
ER

PT J
AU Olsson, R
   Giesler, R
   Loring, JS
   Persson, P
AF Olsson, Rickard
   Giesler, Reiner
   Loring, John S.
   Persson, Per
TI Adsorption, Desorption, and Surface-Promoted Hydrolysis of
   Glucose-1-Phosphate in Aqueous Goethite (alpha-FeOOH) Suspensions
SO LANGMUIR
LA English
DT Article
ID INOSITOL HEXAPHOSPHATE; MYOINOSITOL HEXAPHOSPHATE; ORGANIC PHOSPHORUS;
   SOIL; INTERFACE; ARSENATE; COMPLEXATION; SPECTROSCOPY; MECHANISMS;
   PHOSPHATE
AB Adsorption, desorption, and precipitation reactions at environmental interfaces govern the fate of phosphorus in terrestrial and aquatic environments. Typically, a substantial part of the total pool of phosphorus consists of organophosphate, and in this study we have focused on the interactions between glucose-I-phosphate (G I P) and goethite (alpha-FeOOH) particles. The adsorption and surface-promoted hydrolysis reactions have been studied at room temperature as a function of pH, time, and total concentration of GIP by means of quantitative batch experiments in combination with infrared spectroscopy. A novel simultaneous infrared and potentiometric titration (SI PT) technique has also been used to study the rates and mechanisms of desorption of the surface complexes. The results have shown that GIP adsorption occurs over a wide pH interval and at pH values above the isoelectric point of goethite (IEP(goethite) = 9.4), indicating a comparatively strong interaction with the particle surfaces. As evidenced by IR spectroscopy, GIP formed pH-dependent surface complexes on goethite, and investigations of both adsorption and desorption processes were consistent with a model including three types of surface complexes. These complexes interact monodentately with surface Fe but differ in hydrogen bonding interactions via the auxiliary oxygens of the phosphate group. The apparent desorption rates were shown to be influenced by reaction pathways that include interconversion of surface species, which highlights the difficulty in determining the intrinsic desorption rates of individual surface complexes. Desorption results have also indicated that the molecular structures of surface complexes and the surface charge are two important determinants of GIP desorption rates. Finally, this study has shown that surface-promoted hydrolysis of GIP by goethite is base-catalyzed but that the extent of hydrolysis was small.
C1 [Olsson, Rickard; Loring, John S.; Persson, Per] Umea Univ, Dept Chem, SE-90187 Umea, Sweden.
   [Giesler, Reiner] Umea Univ, Climate Impacts Res Ctr, Dept Ecol & Environm Sci, SE-90187 Umea, Sweden.
   [Loring, John S.] Pacific NW Natl Lab, Richland, WA 99352 USA.
RP Persson, P (reprint author), Umea Univ, Dept Chem, SE-90187 Umea, Sweden.
EM per.persson@chem.umu.se
RI Persson, Per/D-7388-2012
OI Persson, Per/0000-0001-9172-3068
FU Swedish Research Council; Kempe foundation
FX This work was supported by the Swedish Research Council. The Kempe
   foundation is acknowledged for providing funding of the infrared
   spectrometer. The molecular orbital calculations were conducted using
   the resources of High Performance Computing Center North (HPC2N).
NR 45
TC 24
Z9 26
U1 9
U2 49
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0743-7463
J9 LANGMUIR
JI Langmuir
PD DEC 21
PY 2010
VL 26
IS 24
BP 18760
EP 18770
DI 10.1021/la1026152
PG 11
WC Chemistry, Multidisciplinary; Chemistry, Physical; Materials Science,
   Multidisciplinary
SC Chemistry; Materials Science
GA 693IL
UT WOS:000285217700029
PM 21087005
ER

PT J
AU Xu, F
   Zhang, HY
   Ilavsky, J
   Stanciu, L
   Ho, D
   Justice, MJ
   Petrache, HI
   Xie, JA
AF Xu, Fan
   Zhang, Hang Yu
   Ilavsky, Jan
   Stanciu, Lia
   Ho, Derek
   Justice, Matthew J.
   Petrache, Horia I.
   Xie, Jian
TI Investigation of a Catalyst Ink Dispersion Using Both Ultra-Small-Angle
   X-ray Scattering and Cryogenic TEM
SO LANGMUIR
LA English
DT Article
ID ELECTROLYTE FUEL-CELL; PERFLUOROSULFONATED IONOMERS; MEMBRANES; NAFION
AB The dispersion of Nation ionomer particles and Pt/C catalyst aggregates in liquid media was studied using both ultra-small-angle X-ray scattering (USAXS) and cryogenic TEM. A systematic approach was taken to study first the dispersion of each component (i.e., ionomer particles and Pt/C aggregates), then the combination of the components, and last the catalyst ink. Multiple-level curve fitting was used to extract the particle size, size distribution, and geometry of the Pt/C aggregates and the Nation particles in liquid media from the scattering data. The results suggest that the particle size, size distribution, and geometry are not uniform throughout the systems but rather vary significantly. It was found that the interaction of each component (i.e., the Nation ionomer particles and the Pt/C aggregates) occurs in the dispersion. Cryogenic TEM was used to observe the size and geometry of the particles in liquid directly and to validate the scattering results. The TEM results showed excellent agreement.
C1 [Xu, Fan; Xie, Jian] Indiana Univ Purdue Univ Indianapolis IUPUI, Dept Mech Engn, Indianapolis, IN 46202 USA.
   [Justice, Matthew J.; Petrache, Horia I.] Indiana Univ Purdue Univ Indianapolis IUPUI, Dept Phys, Indianapolis, IN 46202 USA.
   [Zhang, Hang Yu; Stanciu, Lia] Purdue Univ, Weldon Sch Biomed Engn, W Lafayette, IN 47907 USA.
   [Stanciu, Lia] Purdue Univ, Sch Mat Engn, W Lafayette, IN 47907 USA.
   [Ilavsky, Jan] Argonne Natl Lab, Xray Sci Div, Argonne, IL 60439 USA.
   [Ho, Derek] NIST, Div Polymer, Gaithersburg, MD 20899 USA.
RP Xie, JA (reprint author), Indiana Univ Purdue Univ Indianapolis IUPUI, Dept Mech Engn, Indianapolis, IN 46202 USA.
EM jianxie@iupui.edu
RI Ilavsky, Jan/D-4521-2013; Xu, Fan/L-1114-2013; USAXS, APS/D-4198-2013
OI Ilavsky, Jan/0000-0003-1982-8900; 
NR 18
TC 14
Z9 14
U1 2
U2 26
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0743-7463
J9 LANGMUIR
JI Langmuir
PD DEC 21
PY 2010
VL 26
IS 24
BP 19199
EP 19208
DI 10.1021/la1028228
PG 10
WC Chemistry, Multidisciplinary; Chemistry, Physical; Materials Science,
   Multidisciplinary
SC Chemistry; Materials Science
GA 693IL
UT WOS:000285217700085
PM 21090580
ER

PT J
AU Basore, JR
   Lavrik, NV
   Baker, LA
AF Basore, Joseph R.
   Lavrik, Nickolay V.
   Baker, Lane A.
TI Electromagnetic Micropores: Fabrication and Operation
SO LANGMUIR
LA English
DT Article
ID NANOPOROUS COLLOIDAL FILMS; MICROELECTROMAGNETIC TRAPS; MAGNETIC
   NANOPARTICLES; MICROFLUIDIC PLATFORM; ION-TRANSPORT; ON-CHIP; MEMBRANES;
   SEPARATION; DNA; MANIPULATION
AB We describe the fabrication and characterization of electromagnetic micropores. These devices consist of a micropore encompassed by a microelectromagnetic trap. Fabrication of the device involves multiple photolithographic steps, combined with deep reactive ion etching and subsequent insulation steps. When immersed in an electrolyte solution, application of a constant potential across the micropore results in an ionic current. Energizing the electromagnetic trap surrounding the micropore produces regions of high magnetic field gradients in the vicinity of the micropore that can direct motion of a ferrofluid onto or off of the micropore. This results in dynamic gating of the ion current through the micropore structure. In this report, we detail fabrication and characterize the electrical and ionic properties of the prepared electromagnetic micropores.
C1 [Basore, Joseph R.; Baker, Lane A.] Indiana Univ, Dept Chem, Bloomington, IN 47405 USA.
   [Lavrik, Nickolay V.] Oak Ridge Natl Lab, Ctr Nanophase Mat Sci, Oak Ridge, TN 37831 USA.
RP Baker, LA (reprint author), Indiana Univ, Dept Chem, Bloomington, IN 47405 USA.
EM lanbaker@indiana.edu
RI Baker, Lane/B-6452-2008; Lavrik, Nickolay/B-5268-2011
OI Lavrik, Nickolay/0000-0002-9543-5634
FU NSF [CHE-0847624]; Division of Scientific User Facilities, U.S.
   Department of Energy
FX Financial support was provided by the NSF (CHE-0847624). Portions of
   this research were conducted at the Center for Nanophase Materials
   Sciences, which is sponsored at Oak Ridge National Laboratory by the
   Division of Scientific User Facilities, U.S. Department of Energy.
NR 61
TC 4
Z9 4
U1 2
U2 16
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0743-7463
J9 LANGMUIR
JI Langmuir
PD DEC 21
PY 2010
VL 26
IS 24
BP 19239
EP 19244
DI 10.1021/la103977e
PG 6
WC Chemistry, Multidisciplinary; Chemistry, Physical; Materials Science,
   Multidisciplinary
SC Chemistry; Materials Science
GA 693IL
UT WOS:000285217700090
PM 21087004
ER

PT J
AU Descalle, MA
   Vetter, K
   Hansen, A
   Daniel, J
   Prussin, SG
AF Descalle, Marie-Anne
   Vetter, Kai
   Hansen, Araina
   Daniel, Joseph
   Prussin, Stanley G.
TI Detector design for high-resolution MeV photon imaging of cargo
   containers using spectral information
SO NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS
   SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT
LA English
DT Article
DE Monte Carlo simulations; Container scanning; Bremsstrahlung; Inorganic
   scintillator; MeV photon imaging; Energy discrimination
AB Monte Carlo simulations of a pixelated detector array of inorganic scintillators for high spatial resolution imaging of 1-9 MeV photons are presented The results suggest that a detector array of 05 cm x 0 5 cm x 5 cm pixels of bismuth germanate may provide sufficient efficiency and spatial resolution to permit imaging of an object with uncertainties in dimension of several millimeters The crosstalk between pixels is found to be in the range of a few percent when pixels are shielded by similar to 1 mm of lead or tungsten The contrast at the edge of an object is greatly improved by rejection of events depositing less than similar to 1 MeV Given the relatively short decay time of BGO the simulations suggest that such a detector may prove adequate for the purpose of rapid scanning of highly shielded cargos for possible presence of high atomic number (including clandestine fissionable) materials when used with low current high duty factor X-ray sources (C) 2010 Elsevier B V All rights reserved
C1 [Descalle, Marie-Anne] Lawrence Livermore Natl Lab, Phys & Life Sci Directorate L 211, Livermore, CA 94550 USA.
   [Vetter, Kai; Hansen, Araina; Daniel, Joseph; Prussin, Stanley G.] Univ Calif Berkeley, Dept Nucl Engn, Berkeley, CA 94720 USA.
   [Vetter, Kai; Hansen, Araina; Daniel, Joseph; Prussin, Stanley G.] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
RP Descalle, MA (reprint author), Lawrence Livermore Natl Lab, Phys & Life Sci Directorate L 211, 7000 East Ave, Livermore, CA 94550 USA.
FU US Department of Energy by Lawrence Livermore National Laboratory
   [AC52-07NA27344]; University Office of the President University of
   California Berkeley
FX This work was performed under the auspices of the US Department of
   Energy by Lawrence Livermore National Laboratory under Contract
   DE-AC52-07NA27344 This work was funded by a grant of the University
   Office of the President University of California Berkeley
NR 13
TC 0
Z9 0
U1 0
U2 7
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-9002
J9 NUCL INSTRUM METH A
JI Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc.
   Equip.
PD DEC 21
PY 2010
VL 624
IS 3
BP 635
EP 640
DI 10.1016/j.nima.2010.09.150
PG 6
WC Instruments & Instrumentation; Nuclear Science & Technology; Physics,
   Nuclear; Physics, Particles & Fields
SC Instruments & Instrumentation; Nuclear Science & Technology; Physics
GA 695LC
UT WOS:000285370600011
ER

PT J
AU Cross, AS
   Knauer, JP
   Mycielski, A
   Kochanowska, D
   Wiktowska-Baran, M
   Jakiela, R
   Domagala, J
   Cui, Y
   James, RB
   Sobolewski, R
AF Cross, A. S.
   Knauer, J. P.
   Mycielski, A.
   Kochanowska, D.
   Wiktowska-Baran, M.
   Jakiela, R.
   Domagala, J.
   Cui, Y.
   James, R. B.
   Sobolewski, Roman
TI (Cd,Mn)Te detectors for characterization of X-ray emissions generated
   during laser-driven fusion experiments
SO NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS
   SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT
LA English
DT Article
DE II-VI compound semiconductor devices; CdMnTe; Photoconductive devices;
   Semiconductor radiation detectors; X ray detectors; X ray spectroscopy
ID PHOTOCONDUCTIVE DEVICES; CRYSTAL; DIAMOND; CD1-XMNXTE; GROWTH; CDMNTE
AB We present our measurements of (Cd Mn)Te photoconductive detectors (PCDs) intending to characterize both the temporal and spectral dependence of X-ray emissions from laser-illuminated targets during inertial confinement fusion experiments Our Cd(1-x)Mn(x)Te (x=0 05) single crystals doped with V were grown using a vertical Bridgman method and annealed in Cd vapor for the highest resistivity of similar to 10(10) Omega cm The 1-mm-long and 2 3-mm-long detectors were placed in the same housing as two 1-mm-long diamond PCDs Each device was preceded by a Be X-ray filter with 37% X-ray transmission at the 1 keV cutoff energy Energy of the incident OMEGA laser pulses varied from 2 3 to 28 kJ Using targets of empty plastic shells we observed two X-ray emission events separated by 1 24 ns the first event was caused by heating of the shell that created a hot corona while the second event was an X-ray emission from the fully compressed target Experiments with targets with steel cores enabled us to analyze the time-resolved relaxation dynamics of photo-excited carriers in the (Cd Mn)Te crystals According to our calculations the (Cd Mn)Te material can very effectively absorb X-rays with energies of up to above 100 keV and the (Cd Mn)Te PCDs are likely to complement the diamond detectors currently used in laser-confinement fusion experiments (C) 2010 Elsevier B V All rights reserved
C1 [Cross, A. S.; Knauer, J. P.; Sobolewski, Roman] Univ Rochester, Laser Energet Lab, Rochester, NY 14623 USA.
   [Cross, A. S.; Sobolewski, Roman] Univ Rochester, Dept Elect & Comp Engn, Rochester, NY 14627 USA.
   [Mycielski, A.; Kochanowska, D.; Wiktowska-Baran, M.; Jakiela, R.; Domagala, J.] Polish Acad Sci, Inst Phys, PL-02668 Warsaw, Poland.
   [Cui, Y.; James, R. B.] Brookhaven Natl Lab, Upton, NY 11973 USA.
RP Cross, AS (reprint author), Univ Rochester, Laser Energet Lab, 250 E River Rd, Rochester, NY 14623 USA.
RI Kochanowska, Dominika/P-8978-2016; Sobolewski, Roman/A-1979-2013;
   Domagala, Jaroslaw/P-1811-2016
OI Domagala, Jaroslaw/0000-0001-5515-9877
FU University of Rochester Laboratory for Laser Energetics; U S Department
   of Energy Office of Inertial Confinement Fusion [DE-FC52-08NA28302];
   University of Rochester; New York State Energy Research and Development
   Authority; Polish Ministry of Science and Higher Education
   [3T08A-046-30]
FX AS Cross acknowledges support from the Frank Horton Graduate Fellowship
   Program at the University of Rochester Laboratory for Laser Energetics
   Work in Rochester was supported in part by the U S Department of Energy
   Office of Inertial Confinement Fusion under Cooperative Agreement no
   DE-FC52-08NA28302 the University of Rochester and the New York State
   Energy Research and Development Authority The support of DOE does not
   constitute an endorsement by DOE of the views expressed in this article
   Work in Warsaw was supported by the Polish Ministry of Science and
   Higher Educationunder Grant no 3T08A-046-30
NR 22
TC 2
Z9 2
U1 1
U2 3
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-9002
J9 NUCL INSTRUM METH A
JI Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc.
   Equip.
PD DEC 21
PY 2010
VL 624
IS 3
BP 649
EP 655
DI 10.1016/j.nima.2010.09.076
PG 7
WC Instruments & Instrumentation; Nuclear Science & Technology; Physics,
   Nuclear; Physics, Particles & Fields
SC Instruments & Instrumentation; Nuclear Science & Technology; Physics
GA 695LC
UT WOS:000285370600014
ER

PT J
AU Bleuel, DL
   Bernstein, LA
   Burke, JT
   Gibelin, J
   Heffner, MD
   Mintz, J
   Norman, EB
   Phair, L
   Scielzo, ND
   Sheets, SA
   Snyderman, NJ
   Stoyer, MA
   Wiedeking, M
AF Bleuel, D. L.
   Bernstein, L. A.
   Burke, J. T.
   Gibelin, J.
   Heffner, M. D.
   Mintz, J.
   Norman, E. B.
   Phair, L.
   Scielzo, N. D.
   Sheets, S. A.
   Snyderman, N. J.
   Stoyer, M. A.
   Wiedeking, M.
TI Gamma-ray multiplicity measurement of the spontaneous fission of Cf-252
   in a segmented HPGe/BGO detector array
SO NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS
   SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT
LA English
DT Article
DE Fission; Multiplicity; Gamma ray; Neutron
ID DISTRIBUTIONS; INSIGHTS; NUCLEI; CLOVER
AB Coincident gamma rays from a Cf-252 source were measured using an array of six segmented high-purity germanium (HPGe) Clover detectors each enclosed by 16 bismuth-germanate (BGO) detectors The detectors were arranged in a cubic pattern around a 1 mu Ci Cf-252 source to cover a large solid angle for gamma-ray measurement with a reasonable reconstruction of the multiplicity Neutron multiplicity was determined in certain cases by identifying the prompt gamma rays from individual fission fragment pairs Multiplicity distributions from previous experiments and theoretical models were convolved with the response function of the array and compared to the present results These results suggest a gamma-ray multiplicity spectrum broader than previous measurements and models and provide no evidence of correlation with neutron multiplicity (C) 2010 Elsevier B V All rights reserved
C1 [Bleuel, D. L.; Bernstein, L. A.; Burke, J. T.; Heffner, M. D.; Norman, E. B.; Scielzo, N. D.; Sheets, S. A.; Snyderman, N. J.; Stoyer, M. A.; Wiedeking, M.] Lawrence Livermore Natl Lab, Livermore, CA 94551 USA.
   [Gibelin, J.; Norman, E. B.; Phair, L.; Wiedeking, M.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Mintz, J.; Norman, E. B.] Univ Calif Berkeley, Dept Nucl Engn, Berkeley, CA 94720 USA.
RP Bleuel, DL (reprint author), Lawrence Livermore Natl Lab, Livermore, CA 94551 USA.
OI GIBELIN, Julien/0000-0001-6751-3714
FU U S Department of Energy by Lawrence Livermore National Laboratory
   [W-7405-Eng-48, DE-AC52-07NA27344]; U S Department of Energy by Lawrence
   Berkeley National Laboratory [DE-AC02-05CH11231]
FX This work was performed under the auspices of the U S Department of
   Energy by Lawrence Livermore National Laboratory in part under Contract
   W-7405-Eng-48 and in part under Contract DE-AC52-07NA27344 and the U S
   Department of Energy by Lawrence Berkeley National Laboratory under
   Contract no DE-AC02-05CH11231
NR 30
TC 6
Z9 6
U1 1
U2 4
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-9002
J9 NUCL INSTRUM METH A
JI Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc.
   Equip.
PD DEC 21
PY 2010
VL 624
IS 3
BP 691
EP 698
DI 10.1016/j.nima.2010.09.145
PG 8
WC Instruments & Instrumentation; Nuclear Science & Technology; Physics,
   Nuclear; Physics, Particles & Fields
SC Instruments & Instrumentation; Nuclear Science & Technology; Physics
GA 695LC
UT WOS:000285370600020
ER

PT J
AU Weber, JKR
   Benmore, CJ
   Jennings, G
   Wilding, MC
   Parise, JB
AF Weber, J. K. R.
   Benmore, C. J.
   Jennings, G.
   Wilding, M. C.
   Parise, J. B.
TI Instrumentation for fast in-situ X-ray structure measurements on
   non-equilibrium liquids
SO NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS
   SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT
LA English
DT Article
DE X ray; Structure; Liquids; Glass; Extreme temperature; Supercooled
AB Probing the structure of non-equilibrium melts is important to advance the fundamental understanding of liquids and glass formation and development of new materials Combined use of high flux high energy X-rays and fast large area detectors enables in situ probing of liquids suspended and laser beam heated in an aerodynamic levitator High-energy X-rays provide high resolution data and avoid the complications of multiple scattering and absorption within the sample The use of non-contact processing heating and measurement enables deep supercooling and avoids the need for corrections due to scattering by the container The technique provides an extreme temperature sample environment for measurements at rates of 5 spectra per second from superheated and supercooled liquids (C) 2010 Elsevier BV All rights reserved
C1 [Weber, J. K. R.] Mat Dev Inc, Arlington Hts, IL 60004 USA.
   [Weber, J. K. R.; Benmore, C. J.; Jennings, G.] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Wilding, M. C.] Aberystwyth Univ, Aberystwyth SY23 3BZ, Dyfed, Wales.
   [Parise, J. B.] SUNY Stony Brook, Stony Brook, NY 11794 USA.
RP Weber, JKR (reprint author), Mat Dev Inc, 3090 Daniels Court, Arlington Hts, IL 60004 USA.
OI Benmore, Chris/0000-0001-7007-7749
FU DOE [DE-AC05-00OR22725, DE-AC02-06CH11357, DE-FG02-09ER46650];
   Aberystwyth University
FX Work supported by DOE Contract nos DE-AC05-00OR22725 DE-AC02-06CH11357
   and DE-FG02-09ER46650 and the Aberystwyth University Research Fund
   (CAFMaD)
NR 9
TC 11
Z9 12
U1 1
U2 14
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-9002
J9 NUCL INSTRUM METH A
JI Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc.
   Equip.
PD DEC 21
PY 2010
VL 624
IS 3
BP 728
EP 730
DI 10.1016/j.nima.2010.09.125
PG 3
WC Instruments & Instrumentation; Nuclear Science & Technology; Physics,
   Nuclear; Physics, Particles & Fields
SC Instruments & Instrumentation; Nuclear Science & Technology; Physics
GA 695LC
UT WOS:000285370600024
ER

PT J
AU Yao, H
   Lee, DH
AF Yao, Hong
   Lee, Dung-Hai
TI Topological insulators and topological nonlinear sigma models
SO PHYSICAL REVIEW B
LA English
DT Article
ID ISOTROPIC HEISENBERG CHAIN; HGTE QUANTUM-WELLS; SINGLE DIRAC CONE;
   ARBITRARY SPINS; EXCITATIONS; SOLITONS; FERMIONS; SURFACE; BI2TE3; PHASE
AB In this paper we link the physics of topological nonlinear sigma models with that of Chern-Simons insulators. We show that corresponding to every 2n-dimensional Chern-Simons insulator there is a (n-1)-dimensional topological nonlinear sigma model with the Wess-Zumino-Witten term. Breaking internal symmetry in these nonlinear sigma models leads to nonlinear sigma models with the theta term. [This is analogous to the dimension reduction leading from 2n-dimensional Chern-Simons insulators to (2n-1) and (2n-2)-dimensional topological insulators protected by discrete symmetries.] The correspondence described in this paper allows one to derive the topological term in a theory involving fermions and order parameters (we shall referred to them as "fermion-sigma models") when the conventional gradient-expansion method fails. We also discuss the quantum number of solitons in topological nonlinear sigma model and the electromagnetic action of the (2n-1)-dimensional topological insulators. Throughout the paper we use a simple model to illustrate how things work.
C1 [Yao, Hong] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   Lawrence Berkeley Natl Lab, Div Mat Sci, Berkeley, CA 94720 USA.
RP Yao, H (reprint author), Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
RI Yao, Hong/D-3202-2011
OI Yao, Hong/0000-0003-2867-6144
FU DOE [DE-AC02-05CH11231]
FX We thank Ying Ran, Ashvin Vishwanath, Tao Xiang, and Guang-Ming Zhang
   for useful discussions. This work is supported by DOE under Grant No.
   DE-AC02-05CH11231.
NR 43
TC 10
Z9 10
U1 0
U2 5
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 21
PY 2010
VL 82
IS 24
AR 245117
DI 10.1103/PhysRevB.82.245117
PG 16
WC Physics, Condensed Matter
SC Physics
GA 715PZ
UT WOS:000286897700001
ER

PT J
AU Bousso, R
   Harnik, R
AF Bousso, Raphael
   Harnik, Roni
TI Entropic landscape
SO PHYSICAL REVIEW D
LA English
DT Article
AB We initiate a quantitative exploration of the entire landscape. Predictions thus far have focused on subsets of landscape vacua that share most properties with our own. Using the entropic principle (the assumption that entropy production traces the formation of complex structures such as observers), we derive six predictions that apply to the whole landscape. Typical observers find themselves in a flat Universe, at the onset of vacuum domination, surrounded by a recently produced bath of relativistic quanta. These quanta are neither very dilute nor condensed, and thus appear as a roughly thermal background. Their characteristic wavelength is of order the inverse fourth root of the vacuum energy. These predictions hold for completely arbitrary observers, in arbitrary vacua with potentially exotic particle physics and cosmology. They agree with observation: We live in a flat Universe at the onset of vacuum domination, whose dominant entropy production process (the glow of galactic dust) has recently produced a radiation bath (the cosmic infrared background). This radiation is marginally dilute, relativistic, and has a wavelength of order 100 microns, as predicted.
C1 [Bousso, Raphael] Univ Calif Berkeley, Dept Phys, Ctr Theoret Phys, Berkeley, CA 94720 USA.
   [Bousso, Raphael] Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA.
   [Bousso, Raphael] Univ Tokyo, Inst Phys & Math Universe, Kashiwa, Chiba 2778568, Japan.
   [Harnik, Roni] Stanford Univ, Dept Phys, Stanford Inst Theoret Phys, Stanford, CA 94305 USA.
RP Bousso, R (reprint author), Univ Calif Berkeley, Dept Phys, Ctr Theoret Phys, Berkeley, CA 94720 USA.
FU Berkeley Center for Theoretical Physics; National Science Foundation
   [08556553]; Institute for the Physics and Mathematics of the Universe;
   fqxi [RFP2-08-06]; U.S. Department of Energy [DE-AC02-05CH11231]
FX We are grateful to M. Arvanitaki, M. Davis, S. Dimopoulos, S. Dubovsky,
   D. Finkbeiner, B. Freivogel, P. Graham, L. Hall, S. Leichenauer, Y.
   Nomura, P. Richards, and U. Seljak for discussions. The work of R.B. was
   supported by the Berkeley Center for Theoretical Physics, by the
   National Science Foundation under Grant No. 08556553, by the Institute
   for the Physics and Mathematics of the Universe, by fqxi under Grant No.
   RFP2-08-06, and by the U.S. Department of Energy under Contract No.
   DE-AC02-05CH11231.
NR 27
TC 16
Z9 16
U1 0
U2 0
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 21
PY 2010
VL 82
IS 12
AR 123523
DI 10.1103/PhysRevD.82.123523
PG 19
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 713NJ
UT WOS:000286744400004
ER

PT J
AU Zeng, GSL
   Gullberg, GT
   Kadrmas, DJ
AF Zeng, Gengsheng L.
   Gullberg, Grant T.
   Kadrmas, Dan J.
TI Closed-form kinetic parameter estimation solution to the truncated data
   problem
SO PHYSICS IN MEDICINE AND BIOLOGY
LA English
DT Article
ID POSITRON EMISSION TOMOGRAPHY; COMPUTED-TOMOGRAPHY; INTERIOR PROBLEM;
   NOISE PROPERTIES; EM ALGORITHM; RECONSTRUCTION; SPECT; TRANSMISSION;
   MAPS
AB In a dedicated cardiac single photon emission computed tomography (SPECT) system, the detectors are focused on the heart and the background is truncated in the projections. Reconstruction using truncated data results in biased images, leading to inaccurate kinetic parameter estimates. This paper has developed a closed-form kinetic parameter estimation solution to the dynamic emission imaging problem. This solution is insensitive to the bias in the reconstructed images that is caused by the projection data truncation. This paper introduces two new ideas: (1) it includes background bias as an additional parameter to estimate, and (2) it presents a closed-form solution for compartment models. The method is based on the following two assumptions: (i) the amount of the bias is directly proportional to the truncated activities in the projection data, and (ii) the background concentration is directly proportional to the concentration in the myocardium. In other words, the method assumes that the image slice contains only the heart and the background, without other organs, that the heart is not truncated, and that the background radioactivity is directly proportional to the radioactivity in the blood pool. As long as the background activity can be modeled, the proposed method is applicable regardless of the number of compartments in the model. For simplicity, the proposed method is presented and verified using a single compartment model with computer simulations using both noiseless and noisy projections.
C1 [Zeng, Gengsheng L.; Kadrmas, Dan J.] Univ Utah, Dept Radiol, Utah Ctr Adv Imaging Res, Salt Lake City, UT 84108 USA.
   [Gullberg, Grant T.] Ernest Orlando Lawrence Berkeley Natl Lab, Dept Radiotracer Dev & Imaging Technol, Berkeley, CA 94720 USA.
RP Zeng, GSL (reprint author), Univ Utah, Dept Radiol, Utah Ctr Adv Imaging Res, 729 Arapeen Dr, Salt Lake City, UT 84108 USA.
EM larry@ucair.med.utah.edu; gtgullberg@lbl.gov; kadrmas@ucair.med.utha.edu
FU Margolis Foundation; NIH [R01 CA135556, R01 HL50663]; Office of Science,
   Office of Biological and Environmental Research of the US Department of
   Energy [DE-AC02-05CH11231]
FX This work was supported in part by the Margolis Foundation, NIH grants
   R01 CA135556, R01 HL50663, and by the Director, Office of Science,
   Office of Biological and Environmental Research of the US Department of
   Energy under contract DE-AC02-05CH11231.
NR 25
TC 5
Z9 6
U1 0
U2 4
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 0031-9155
J9 PHYS MED BIOL
JI Phys. Med. Biol.
PD DEC 21
PY 2010
VL 55
IS 24
BP 7453
EP 7468
DI 10.1088/0031-9155/55/24/005
PG 16
WC Engineering, Biomedical; Radiology, Nuclear Medicine & Medical Imaging
SC Engineering; Radiology, Nuclear Medicine & Medical Imaging
GA 688BT
UT WOS:000284825200005
PM 21098917
ER

PT J
AU Wang, HZ
   Avci, U
   Nakashima, J
   Hahn, MG
   Chen, F
   Dixon, RA
AF Wang, Huanzhong
   Avci, Utku
   Nakashima, Jin
   Hahn, Michael G.
   Chen, Fang
   Dixon, Richard A.
TI Mutation of WRKY transcription factors initiates pith secondary wall
   formation and increases stem biomass in dicotyledonous plants
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
   AMERICA
LA English
DT Article
DE lignocellulosic bioenergy crops; transcriptional regulation; lignin
   modification; biomass yield
ID LEGUME MEDICAGO-TRUNCATULA; INSERTIONAL MUTAGENESIS;
   ARABIDOPSIS-THALIANA; ECTOPIC DEPOSITION; DIRECT TARGET; BIOSYNTHESIS;
   LIGNIN; SND1; GENOMICS; ETHYLENE
AB Stems of dicotyledonous plants consist of an outer epidermis, a cortex, a ring of secondarily thickened vascular bundles and interfascicular cells, and inner pith parenchyma cells with thin primary walls. It is unclear how the different cell layers attain and retain their identities. Here, we show that WRKY transcription factors are in part responsible for the parenchymatous nature of the pith cells in dicotyledonous plants. We isolated mutants of Medicago truncatula and Arabidopsis thaliana with secondary cell wall thickening in pith cells associated with ectopic deposition of lignin, xylan, and cellulose, leading to an similar to 50% increase in biomass density in stem tissue of the Arabidopsis mutants. The mutations are caused by disruption of stem-expressed WRKY transcription factor (TF) genes, which consequently up-regulate downstream genes encoding the NAM, ATAF1/2, and CUC2 (NAC) and CCCH type (C3H) zinc finger TFs that activate secondary wall synthesis. Direct binding of WRKY to the NAC gene promoter and repression of three downstream TFs were confirmed by in vitro assays and in planta transgenic experiments. Secondary wall-bearing cells form lignocellulosic biomass that is the source for second generation biofuel production. The discovery of negative regulators of secondary wall formation in pith opens up the possibility of significantly increasing the mass of fermentable cell wall components in bioenergy crops.
C1 [Wang, Huanzhong; Nakashima, Jin; Chen, Fang; Dixon, Richard A.] Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA.
   [Avci, Utku; Hahn, Michael G.] Univ Georgia, Complex Carbohydrate Res Ctr, Athens, GA 30602 USA.
   [Avci, Utku; Hahn, Michael G.; Chen, Fang; Dixon, Richard A.] Bioenergy Sci Ctr BESC, Oak Ridge, TN 37831 USA.
RP Dixon, RA (reprint author), Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA.
EM radixon@noble.org
RI AVCI, Utku/B-9745-2011; 
OI Hahn, Michael/0000-0003-2136-5191
FU US Department of Energy [DE-GG02-06ER64303, DEPS02-06ER64304]; Oklahoma
   Bioenergy Center (OBC); Samuel Roberts Noble Foundation; Office of
   Biological and Environmental Research in the Department of Energy Office
   of Science; National Science Foundation [DBI-0421683, 703285]
FX We thank Drs. Elison Blancaflor and Richard S. Nelson for critical
   reading of the manuscript and Dr. Yuhong Tang for assistance with
   microarray analysis. This work was supported by grants from the US
   Department of Energy (DE-GG02-06ER64303 and DEPS02-06ER64304), the
   Oklahoma Bioenergy Center (OBC), and the Samuel Roberts Noble
   Foundation. The BioEnergy Science Center is supported by the Office of
   Biological and Environmental Research in the Department of Energy Office
   of Science. Generation of the Complex Carbohydrate Research Center
   series of monoclonal antibodies used in this research was supported by
   Grant DBI-0421683 from the National Science Foundation Plant Genome
   Program, and the M. truncatula Tnt1 mutants, jointly owned by Centre
   National de la Recherche Scientifique and the Noble Foundation, were
   created through research funded in part by Grant 703285 from the
   National Science Foundation.
NR 34
TC 90
Z9 99
U1 4
U2 47
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 21
PY 2010
VL 107
IS 51
BP 22338
EP 22343
DI 10.1073/pnas.1016436107
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 697OB
UT WOS:000285521800073
PM 21135241
ER

PT J
AU Rzaca-Urban, T
   Urban, W
   Pinston, JA
   Simpson, GS
   Smith, AG
   Smith, JF
   Ahmad, I
AF Rzaca-Urban, T.
   Urban, W.
   Pinston, J. A.
   Simpson, G. S.
   Smith, A. G.
   Smith, J. F.
   Ahmad, I.
TI Near-yrast structure of Pr-149
SO PHYSICAL REVIEW C
LA English
DT Article
ID NUCLEAR-DATA SHEETS; MASS PR ISOTOPES; HIGH-SPIN STATES; NEUTRON-RICH;
   OCTUPOLE CORRELATIONS; FISSION FRAGMENTS; ROTATIONAL BANDS; LEVEL
   STRUCTURE; EXCITED-LEVELS; LARGE ARRAYS
AB The neutron-rich nucleus Pr-149 has been studied by means of prompt and delayed gamma-ray spectroscopy using the EUROGAM2 and Gammasphere arrays of Ge detectors. New spins have been assigned to a previously reported band and it is interpreted as having a h(11/2) proton structure, from a comparison with quasiparticle-rotor model calculations. The strength of octupole correlations in odd-Z nuclei of the region is discussed.
C1 [Rzaca-Urban, T.; Urban, W.] Univ Warsaw, Fac Phys, PL-00681 Warsaw, Poland.
   [Urban, W.] Inst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France.
   [Pinston, J. A.; Simpson, G. S.] Univ Grenoble 1, LPSC, CNRS, Inst Natl Polytechn Grenoble,IN2P3, F-38026 Grenoble, France.
   [Smith, A. G.; Smith, J. F.] Univ Manchester, Dept Phys & Astron, Manchester M13 9PL, Lancs, England.
   [Ahmad, I.] Argonne Natl Lab, Argonne, IL 60439 USA.
RP Rzaca-Urban, T (reprint author), Univ Warsaw, Fac Phys, Ul Hoza 69, PL-00681 Warsaw, Poland.
FU US Department of Energy, Office of Nuclear Physics [DE-AC02-06CH11357]
FX The authors are indebted for the use of <SUP>248</SUP>Cm to the Office
   of Basic Energy Sciences, US Department of Energy, through the
   transplutonium element production facilities at the Oak Ridge National
   Laboratory. This work has been partly supported by the US Department of
   Energy, Office of Nuclear Physics, under Contract No. DE-AC02-06CH11357.
NR 41
TC 5
Z9 5
U1 0
U2 6
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0556-2813
J9 PHYS REV C
JI Phys. Rev. C
PD DEC 20
PY 2010
VL 82
IS 6
AR 067304
DI 10.1103/PhysRevC.82.067304
PG 4
WC Physics, Nuclear
SC Physics
GA 713LV
UT WOS:000286740400005
ER

PT J
AU Cao, Y
   Sheng, G
   Zhang, JX
   Choudhury, S
   Li, YL
   Randall, CA
   Chen, LQ
AF Cao, Y.
   Sheng, G.
   Zhang, J. X.
   Choudhury, S.
   Li, Y. L.
   Randall, C. A.
   Chen, L. Q.
TI Piezoelectric response of single-crystal PbZr1-xTixO3 near morphotropic
   phase boundary predicted by phase-field simulation
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID LEAD-ZIRCONATE-TITANATE; THIN-FILMS; HIGH-STRAIN; SYSTEM;
   FERROELECTRICS; CERAMICS; DOMAIN; GROWTH; PB(ZN1/3NB2/3)O3-PBTIO3;
   TEMPERATURE
AB The piezoelectric property of hypothetic single-crystal PbZr(1-x)TixO(3) (PZT) is studied using phase-field simulations. The dependence of piezoelectric coefficient (d(33)) on PbTiO3 compositions (x) near the morphotropic phase boundary of PZT was obtained. Using the existing thermodynamic description of PZT, it is shown that d(33) reaches a peak value of 720 pC/N at x=0.47 which is more than three times of that for the ceramic counterpart. The relation between the domain structure of the poled PZT single crystals and the enhancement of d(33) near the MPB composition is discussed. (C) 2010 American Institute of Physics. [doi:10.1063/1.3530443]
C1 [Cao, Y.; Sheng, G.; Zhang, J. X.; Randall, C. A.; Chen, L. Q.] Penn State Univ, Dept Mat Sci & Engn, University Pk, PA 16802 USA.
   [Choudhury, S.] Univ Wisconsin, Dept Mat Sci & Engn, Madison, WI 53792 USA.
   [Li, Y. L.] Pacific NW Natl Lab, Richland, WA 99352 USA.
RP Cao, Y (reprint author), Penn State Univ, Dept Mat Sci & Engn, University Pk, PA 16802 USA.
EM yxc238@psu.edu
RI Sheng, Guang/C-2043-2012; Choudhury, Samrat/B-4115-2009; Chen,
   LongQing/I-7536-2012; Cao, Ye/L-1271-2016
OI Chen, LongQing/0000-0003-3359-3781; Cao, Ye/0000-0002-7365-7447
FU NSF-IUCRC Center for Dielectric Studies at Penn State; National Science
   Foundation [ECCS-0708759, DMR-1006541]
FX The authors are grateful to the financial support for NSF-IUCRC Center
   for Dielectric Studies at Penn State and the National Science Foundation
   under Grant Nos. ECCS-0708759 and DMR-1006541.
NR 42
TC 15
Z9 15
U1 4
U2 36
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 20
PY 2010
VL 97
IS 25
AR 252904
DI 10.1063/1.3530443
PG 3
WC Physics, Applied
SC Physics
GA 700SJ
UT WOS:000285764300058
ER

PT J
AU Clearfield, R
   Railsback, JG
   Pearce, RC
   Hensley, DK
   Fowlkes, JD
   Fuentes-Cabrera, M
   Simpson, ML
   Rack, PD
   Melechko, AV
AF Clearfield, Raphael
   Railsback, Justin G.
   Pearce, Ryan C.
   Hensley, Dale K.
   Fowlkes, Jason D.
   Fuentes-Cabrera, Miguel
   Simpson, Michael L.
   Rack, Philip D.
   Melechko, Anatoli V.
TI Reactive solid-state dewetting of Cu-Ni films on silicon
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID NICKEL SILICIDE; THIN; GROWTH
AB The behavior of a 50 nm Cu-Ni alloy film on Si in a process of reactive solid-state dewetting is presented. The films were annealed at a range of temperatures (300-700 degrees C) in 1% H(2) 99% N(2) reducing atmosphere. The resulting alloy and silicide particles formed by film dewetting and film reaction with the substrate were distinguished by selective wet etching and examined by scanning electron microscopy and spectroscopy. After potassium hydroxide etch, regions that etch slower than silicon substrate have distribution statistics similar to the alloy and silicide particles prior to their removal, indicating strong coupling between mass transport across the interface and along the surface. (C) 2010 American Institute of Physics. [doi:10.1063/1.3527078]
C1 [Clearfield, Raphael; Railsback, Justin G.; Pearce, Ryan C.; Melechko, Anatoli V.] N Carolina State Univ, Dept Mat Sci & Engn, Raleigh, NC 27695 USA.
   [Pearce, Ryan C.; Simpson, Michael L.; Rack, Philip D.] Univ Tennessee, Dept Mat Sci & Engn, Knoxville, TN 37996 USA.
   [Hensley, Dale K.; Fowlkes, Jason D.; Fuentes-Cabrera, Miguel; Simpson, Michael L.; Rack, Philip D.] Oak Ridge Natl Lab, Ctr Nanophase Mat Sci, Oak Ridge, TN 37831 USA.
RP Clearfield, R (reprint author), N Carolina State Univ, Dept Mat Sci & Engn, Box 7907, Raleigh, NC 27695 USA.
EM rclearf@ncsu.edu
RI Melechko, Anatoli/B-8820-2008; Simpson, Michael/A-8410-2011;
   Fuentes-Cabrera, Miguel/Q-2437-2015; Hensley, Dale/A-6282-2016; 
OI Simpson, Michael/0000-0002-3933-3457; Fuentes-Cabrera,
   Miguel/0000-0001-7912-7079; Hensley, Dale/0000-0001-8763-7765; Rack,
   Philip/0000-0002-9964-3254
FU Materials Sciences and Engineering Division, Office of Basic Energy
   Sciences, U.S. Department of Energy; Scientific User Facilities
   Division, Office of Basic Energy Sciences, U.S. Department of Energy
FX This research was supported by the Materials Sciences and Engineering
   Division, Office of Basic Energy Sciences, U.S. Department of Energy
   (processing, analytical microscopy, and experimental design). Thin film
   deposition was conducted through a user project at the Center for
   Nanophase Materials Sciences, Oak Ridge National Laboratory sponsored by
   the Scientific User Facilities Division, Office of Basic Energy
   Sciences, U.S. Department of Energy.
NR 15
TC 6
Z9 6
U1 0
U2 15
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 20
PY 2010
VL 97
IS 25
AR 253101
DI 10.1063/1.3527078
PG 3
WC Physics, Applied
SC Physics
GA 700SJ
UT WOS:000285764300060
ER

PT J
AU Hindmarch, AT
   Harnchana, V
   Ciudad, D
   Negusse, E
   Arena, DA
   Brown, AP
   Brydson, RMD
   Marrows, CH
AF Hindmarch, A. T.
   Harnchana, V.
   Ciudad, D.
   Negusse, E.
   Arena, D. A.
   Brown, A. P.
   Brydson, R. M. D.
   Marrows, C. H.
TI Magnetostructural influences of thin Mg insert layers in crystalline
   CoFe(B)/MgO/CoFe(B) magnetic tunnel junctions
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID MAGNETORESISTANCE
AB It is common to find a thin (similar to 0.5 nm) layer of Mg deposited prior to the MgO tunnel barrier in crystalline CoFe(B)/MgO/CoFe(B) magnetic tunnel junctions, due to the improved device performance that results. However, despite their common usage, the reasons why such layers are effective are unclear. We use structures that model the lower electrode of such devices to show that a suitably thick Mg insert layer enhances the crystal quality of both MgO and CoFe(B), permits interfacial oxides to reduce back to a metallic ferromagnetic state, and hence improves magnetic switching of the CoFe(B) electrode, properties which are inextricably linked to device performance. (C) 2010 American Institute of Physics. [doi:10.1063/1.3527939]
C1 [Hindmarch, A. T.; Ciudad, D.; Marrows, C. H.] Univ Leeds, Sch Phys & Astron, Leeds LS2 9JT, W Yorkshire, England.
   [Harnchana, V.; Brown, A. P.; Brydson, R. M. D.] Univ Leeds, Inst Mat Res, Leeds LS2 9JT, W Yorkshire, England.
   [Negusse, E.] Montana State Univ, Dept Phys, Bozeman, MT 59717 USA.
   [Arena, D. A.] Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
RP Hindmarch, AT (reprint author), Univ Nottingham, Sch Phys & Astron, Nottingham NG7 2RD, England.
EM aidan.hindmarch@nottingham.ac.uk; c.h.marrows@leeds.ac.uk
RI Marrows, Christopher/D-7980-2011; Hindmarch, Aidan/B-7970-2012; Ciudad,
   David/C-5787-2017; 
OI Ciudad, David/0000-0001-8047-6559; Brown, Andy/0000-0001-9692-2154;
   Marrows, Christopher/0000-0003-4812-6393
FU EPSRC; Thai government; Spanish Ministry of Science and Innovation
   [2008-0352]; U.S. Army Research Office [W911NF-08-1-0325]; DOE
   [DE-08NT0004115]
FX We acknowledge financial support from EPSRC and are grateful to
   Brookhaven National Laboratory for NSLS beam-time. V.H. acknowledges
   sponsorship from the Thai government, D.C. acknowledges support from the
   Spanish Ministry of Science and Innovation through Postdoctoral Grant
   Ref. No. 2008-0352, and E.N. acknowledges support from the U.S. Army
   Research Office under Grant No. W911NF-08-1-0325 and DOE under Grant No.
   DE-08NT0004115. We appreciate discussions with K. J. Dempsey, G.
   Burnell, M. Ali, A. K. Suszka, B. J. Hickey, and A. P. Mihai; and the
   invaluable assistance provided by the NSLS VUV ring technical staff.
NR 17
TC 7
Z9 7
U1 0
U2 12
PU AMER INST PHYSICS
PI MELVILLE
PA 1305 WALT WHITMAN RD, STE 300, MELVILLE, NY 11747-4501 USA
SN 0003-6951
EI 1077-3118
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 20
PY 2010
VL 97
IS 25
AR 252502
DI 10.1063/1.3527939
PG 3
WC Physics, Applied
SC Physics
GA 700SJ
UT WOS:000285764300048
ER

PT J
AU Lee, J
   Joo, S
   Kim, T
   Kim, KH
   Rhie, K
   Hong, J
   Shin, KH
AF Lee, Jinseo
   Joo, Sungjung
   Kim, Taeyueb
   Kim, Ki Hyun
   Rhie, Kungwon
   Hong, Jinki
   Shin, Kyung-Ho
TI An electrical switching device controlled by a magnetic field-dependent
   impact ionization process
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID SILICON; LOGIC
AB An abrupt change of conductance at a threshold magnetic field was observed in a device consisting of a nonmagnetic narrow-gap semiconductor. The conductance varies more than 25 times as the magnetic field increases. The threshold magnetic field can be tuned using a bias voltage from zero to several hundred Gauss. This large magnetoconductance effect is caused by the magnetic field-dependent impact ionization process. A theoretical model is proposed, and calculations based on this model simulate the experimental results closely. This device may be a good candidate for an electrical switching device controlled by a magnetic field. (C) 2010 American Institute of Physics. [doi:10.1063/1.3532105]
C1 [Lee, Jinseo; Joo, Sungjung; Kim, Taeyueb; Rhie, Kungwon; Hong, Jinki] Korea Univ, Dept Phys, Jochiwon 339700, South Korea.
   [Kim, Ki Hyun] Brookhaven Natl Lab, Upton, NY 11973 USA.
   [Shin, Kyung-Ho] KIST, Nano Devices Res Ctr, Seoul 130650, South Korea.
RP Lee, J (reprint author), Korea Univ, Dept Phys, Jochiwon 339700, South Korea.
EM krhie@korea.ac.kr; jkhongjkhong@korea.ac.kr
FU MEST [2010-0000506]
FX This work was supported by the KIST vision 21 program and the midcareer
   researcher program through the NRF grant funded by the MEST (Grant No.
   2010-0000506).
NR 16
TC 6
Z9 6
U1 0
U2 15
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 20
PY 2010
VL 97
IS 25
AR 253505
DI 10.1063/1.3532105
PG 3
WC Physics, Applied
SC Physics
GA 700SJ
UT WOS:000285764300091
ER

PT J
AU Kumah, DP
   Reiner, JW
   Segal, Y
   Kolpak, AM
   Zhang, Z
   Su, D
   Zhu, Y
   Sawicki, MS
   Broadbridge, CC
   Ahn, CH
   Walker, FJ
AF Kumah, D. P.
   Reiner, J. W.
   Segal, Y.
   Kolpak, A. M.
   Zhang, Z.
   Su, D.
   Zhu, Y.
   Sawicki, M. S.
   Broadbridge, C. C.
   Ahn, C. H.
   Walker, F. J.
TI The atomic structure and polarization of strained SrTiO3/Si
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID X-RAY-DIFFRACTION; CRYSTALLINE OXIDES; SILICON; INTERFACE
AB For thin film devices based on coupling ferroelectric polarization to charge carriers in semiconductors, the role of the interface is critical. To elucidate this role, we use synchrotron x-ray diffraction to determine the interface structure of epitaxial SrTiO3 grown on the (001) surface of Si. The average displacement of the O octahedral sublattice relative to the Sr sublattice determines the film polarization and is measured to be about 0.05 nm toward the Si, with Ti off-center displacements 0.009 nm away from the substrate. Measurements of films with different boundary conditions on the top of the SrTiO3 show that the polarization at the SrTiO3/Si interface is dominated by oxide-Si chemical interactions. (C) 2010 American Institute of Physics. [doi:10.1063/1.3529460]
C1 [Kumah, D. P.; Reiner, J. W.; Segal, Y.; Kolpak, A. M.; Ahn, C. H.; Walker, F. J.] Yale Univ, Ctr Res Interface Struct & Phenomena, New Haven, CT 06520 USA.
   [Zhang, Z.] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
   [Su, D.; Zhu, Y.] Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA.
   [Sawicki, M. S.; Broadbridge, C. C.] So Connecticut State Univ, Dept Phys, New Haven, CT 06515 USA.
RP Kumah, DP (reprint author), Yale Univ, Ctr Res Interface Struct & Phenomena, New Haven, CT 06520 USA.
EM divine.kumah@yale.edu
RI Kumah, Divine/A-7031-2011; Su, Dong/A-8233-2013; Zhang,
   Zhan/A-9830-2008; 
OI Kumah, Divine/0000-0003-0715-1285; Su, Dong/0000-0002-1921-6683; Zhang,
   Zhan/0000-0002-7618-6134; Walker, Frederick/0000-0002-8094-249X
FU NSF [MRSEC DMR 0520495, DMR 100625]; DOE, Office of Science, Office of
   Basic Energy Sciences [DE-AC02-06CH11357]; U.S. Department of Energy,
   Office of Basic Energy Science [DE-AC02-98CH10886]
FX The authors acknowledge support from the NSF under Grant Nos. MRSEC DMR
   0520495 and DMR 100625. Work at the Advanced Photon Source was supported
   by the DOE, Office of Science, Office of Basic Energy Sciences, under
   Contract No. DE-AC02-06CH11357. Work at Brookhaven was supported by the
   U.S. Department of Energy, Office of Basic Energy Science, under
   Contract No. DE-AC02-98CH10886.
NR 26
TC 14
Z9 14
U1 3
U2 25
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 20
PY 2010
VL 97
IS 25
AR 251902
DI 10.1063/1.3529460
PG 3
WC Physics, Applied
SC Physics
GA 700SJ
UT WOS:000285764300020
ER

PT J
AU Pan, W
   Howell, SW
   Ross, AJ
   Ohta, T
   Friedmann, TA
AF Pan, Wei
   Howell, Stephen W.
   Ross, Anthony Joseph, III
   Ohta, Taisuke
   Friedmann, Thomas A.
TI Observation of the integer quantum Hall effect in high quality, uniform
   wafer-scale epitaxial graphene films
SO APPLIED PHYSICS LETTERS
LA English
DT Article
AB We report the observation of the integer quantum Hall states at Landau level fillings of nu=2, 6, and 10 in a Hall bar device made of a single-layer epitaxial graphene film on the silicon-face of silicon-carbide prepared via argon-assisted graphitization. The two-dimensional electron gas exhibits a low-temperature (at 4 K) carrier mobility of similar to 14 000 cm(2)/V s at the electron density of 6.1 x 10(11) cm(-2). Furthermore, the sheet resistance obtained from four-probe measurements across the whole area (12 x 6 mm(2)) of another specimen grown under similar condition displays roughly uniform values (similar to 1600 Omega/square), suggesting that the macroscopic steps and accompanying multilayer graphene domains play a minor role in the low-temperature electronic transport. (C) 2010 American Institute of Physics. [doi:10.1063/1.3525588]
C1 [Pan, Wei; Howell, Stephen W.; Ross, Anthony Joseph, III; Ohta, Taisuke; Friedmann, Thomas A.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
RP Pan, W (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
EM wpan@sandia.gov
FU LDRD at Sandia National Laboratories; U.S. Department of Energy, Office
   of Basic Energy Sciences user facility at Los Alamos National Laboratory
   [DE-AC52-06NA25396]; U.S. Department of Energy, Office of Basic Energy
   Sciences user facility at Sandia National Laboratories
   [DE-AC04-94AL85000]; U.S. Department of Energy's National Nuclear
   Security Administration [DE-AC04-94AL85000]
FX This work was supported by LDRD at Sandia National Laboratories and was
   performed, in part, at the Center for Integrated Nanotechnologies, a
   U.S. Department of Energy, Office of Basic Energy Sciences user facility
   at Los Alamos National Laboratory (Contract No. DE-AC52-06NA25396) and
   Sandia National Laboratories (Contract No. DE-AC04-94AL85000). Sandia
   National Laboratories is a multiprogram laboratory operated by Sandia
   Corporation, a wholly owned subsidiary of Lockheed Martin company, for
   the U.S. Department of Energy's National Nuclear Security Administration
   under Contract No. DE-AC04-94AL85000. We thank Professor C.-T. Liang of
   National Taiwan University for the help on WL fitting and Dr. N. Bishop
   of Sandia National Laboratories for useful discussions. The authors
   would also like to thank Michael Lilly and Nathaniel Bishop for their
   help in setting up the cryogenic probe station measurements.
NR 19
TC 14
Z9 14
U1 3
U2 13
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 20
PY 2010
VL 97
IS 25
AR 252101
DI 10.1063/1.3525588
PG 3
WC Physics, Applied
SC Physics
GA 700SJ
UT WOS:000285764300034
ER

PT J
AU Perna, P
   Maccariello, D
   Radovic, M
   di Uccio, US
   Pallecchi, I
   Codda, M
   Marre, D
   Cantoni, C
   Gazquez, J
   Varela, M
   Pennycook, SJ
   Granozio, FM
AF Perna, P.
   Maccariello, D.
   Radovic, M.
   di Uccio, U. Scotti
   Pallecchi, I.
   Codda, M.
   Marre, D.
   Cantoni, C.
   Gazquez, J.
   Varela, M.
   Pennycook, S. J.
   Granozio, F. Miletto
TI Conducting interfaces between band insulating oxides: The LaGaO3/SrTiO3
   heterostructure (vol 97, 152111, 2010)
SO APPLIED PHYSICS LETTERS
LA English
DT Correction
C1 [Cantoni, C.; Gazquez, J.; Varela, M.; Pennycook, S. J.; Granozio, F. Miletto] Oak Ridge Natl Lab, Div Mat Sci & Technol, Oak Ridge, TN 37831 USA.
   [Maccariello, D.; Radovic, M.; di Uccio, U. Scotti; Pallecchi, I.; Codda, M.; Marre, D.] Univ Genoa, Dipartimento Fis, CNR, SPIN, I-16146 Genoa, Italy.
   [Perna, P.] Univ Naples Federico 2, CNR, SPIN, Dipartimento Sci Fis, I-80126 Naples, Italy.
RP Granozio, FM (reprint author), Oak Ridge Natl Lab, Div Mat Sci & Technol, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA.
EM miletto@na.infn.it
RI Scotti di Uccio, Umberto/A-4647-2012; Varela, Maria/H-2648-2012;
   Maccariello, Davide/J-8165-2013; Gazquez, Jaume/C-5334-2012; Varela,
   Maria/E-2472-2014; PERNA, PAOLO/C-3862-2012; Marre, Daniele/G-5965-2014;
   Cantoni, Claudia/G-3031-2013
OI Maccariello, Davide/0000-0002-8681-2717; Gazquez,
   Jaume/0000-0002-2561-328X; Varela, Maria/0000-0002-6582-7004; PERNA,
   PAOLO/0000-0001-8537-4834; Marre, Daniele/0000-0002-6230-761X; Cantoni,
   Claudia/0000-0002-9731-2021
NR 1
TC 0
Z9 0
U1 1
U2 10
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 20
PY 2010
VL 97
IS 25
AR 259901
DI 10.1063/1.3514199
PG 1
WC Physics, Applied
SC Physics
GA 700SJ
UT WOS:000285764300095
ER

PT J
AU Qian, HJ
   Murphy, JB
   Shen, Y
   Tang, CX
   Wang, XJ
AF Qian, H. J.
   Murphy, J. B.
   Shen, Y.
   Tang, C. X.
   Wang, X. J.
TI Surface photoemission in a high-brightness electron beam radio frequency
   gun
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID MAGNESIUM; ROUGHNESS
AB We report the experimental characterization of high-brightness electron beam generation from a magnesium (Mg) photocathode. Both the quantum efficiency (QE) and the thermal emittance of an Mg cathode are experimentally investigated. The measured QE similar to 0.2% is the highest reported for a metal cathode. We observed no change in the Mg cathode thermal emittance as the QE varies from 0.015% to 0.15%. The upper-limit of the thermal emittance, 0.5 mm mrad, is about 50% lower than the theoretical prediction. Our results demonstrated the feasibility of having a high QE and a low thermal emittance simultaneously for a robust metal photocathode. c 2010 American Institute of Physics. [doi:10.1063/1.3531561]
C1 [Qian, H. J.; Murphy, J. B.; Shen, Y.; Wang, X. J.] Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
   [Qian, H. J.; Tang, C. X.] Tsinghua Univ, Dept Engn Phys, Beijing 100084, Peoples R China.
RP Wang, XJ (reprint author), Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
EM xwang@bnl.gov
FU U.S. Department of Energy [DE-AC02-98CH1-886]; BNL Laboratory Directed
   Research and Development [08-037]
FX This work was supported in part by U.S. Department of Energy under
   Contract No. DE-AC02-98CH1-886 and BNL Laboratory Directed Research and
   Development Contract No. 08-037.
NR 15
TC 15
Z9 15
U1 0
U2 8
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 20
PY 2010
VL 97
IS 25
AR 253504
DI 10.1063/1.3531561
PG 3
WC Physics, Applied
SC Physics
GA 700SJ
UT WOS:000285764300090
ER

PT J
AU Asano, K
   Inoue, S
   Meszaros, P
AF Asano, Katsuaki
   Inoue, Susumu
   Meszaros, Peter
TI PROMPT X-RAY AND OPTICAL EXCESS EMISSION DUE TO HADRONIC CASCADES IN
   GAMMA-RAY BURSTS
SO ASTROPHYSICAL JOURNAL LETTERS
LA English
DT Article
DE cosmic rays; gamma-ray burst: general; gamma-ray burst: individual
   (090902B, 080319B); radiation mechanisms: non-thermal
ID ENERGY COSMIC-RAYS; SPECTRAL COMPONENT; FERMI OBSERVATIONS; BATSE
   OBSERVATIONS; SUPERNOVA REMNANT; DELAYED EMISSION; GRB 090510;
   ACCELERATION; BEHAVIOR; PROTONS
AB A fraction of gamma-ray bursts (GRBs) exhibit distinct spectral features in their prompt emission below few tens of keV that exceed simple extrapolations of the low-energy power-law portion of the Band spectral model. This is also true for the prompt optical emission observed in several bursts. Through Monte Carlo simulations, we model such low-energy spectral excess components as hadronic cascade emission initiated by photomeson interactions of ultra-high-energy protons accelerated within GRB outflows. Synchrotron radiation from the cascading, secondary electron-positron pairs can naturally reproduce the observed soft spectra in the X-ray band, and in some cases the optical spectra as well. These components can be directly related to the higher energy radiation at GeV energies due to the hadronic cascades. Depending on the spectral shape, the total energy in protons is required to be comparable to or appreciably larger than the observed total photon energy. In particular, we apply our model to the excess X-ray and GeV emission of GRB 090902B, and the bright optical emission of the "naked-eye" GRB 080319B. Besides the hard GeV components detected by Fermi, such X-ray or optical spectral excesses are further potential signatures of ultra-high-energy cosmic ray production in GRBs.
C1 [Asano, Katsuaki] Tokyo Inst Technol, Interact Res Ctr Sci, Meguro Ku, Tokyo 1528550, Japan.
   [Inoue, Susumu] Kyoto Univ, Dept Phys, Sakyo Ku, Kyoto 6068502, Japan.
   [Meszaros, Peter] Penn State Univ, Dept Astron & Astrophys, University Pk, PA 16802 USA.
   [Meszaros, Peter] Penn State Univ, Dept Phys, University Pk, PA 16802 USA.
   [Meszaros, Peter] Penn State Univ, Ctr Particle Astrophys, University Pk, PA 16802 USA.
   [Meszaros, Peter] Fermilab Natl Accelerator Lab, Batavia, IL 60510 USA.
RP Asano, K (reprint author), Tokyo Inst Technol, Interact Res Ctr Sci, Meguro Ku, 2-12-1 Ookayama, Tokyo 1528550, Japan.
EM asano@phys.titech.ac.jp; inoue@tap.scphys.kyoto-u.ac.jp;
   nnp@astro.psu.edu
FU Ministry of Education, Culture, Sports, Science and Technology (MEXT) of
   Japan [22740117, 22540278, 19047004]; NASA [NNX09AT72G, NNX08AL40G]; NSF
   [PHY-0757155]; Universality and Emergence at Kyoto University from MEXT
FX This study is partially supported by Grants-in-Aid for Scientific
   Research No. 22740117, No. 22540278, and No. 19047004 from the Ministry
   of Education, Culture, Sports, Science and Technology (MEXT) of Japan,
   and NASA NNX09AT72G, NASA NNX08AL40G, and NSF PHY-0757155. Also
   acknowledged are U.R.A. and Grants-in-Aid for the global COE program The
   Next Generation of Physics, Spun from Universality and Emergence at
   Kyoto University from MEXT.
NR 49
TC 25
Z9 25
U1 0
U2 2
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 2041-8205
J9 ASTROPHYS J LETT
JI Astrophys. J. Lett.
PD DEC 20
PY 2010
VL 725
IS 2
BP L121
EP L125
DI 10.1088/2041-8205/725/2/L121
PG 5
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 691AD
UT WOS:000285051400003
ER

PT J
AU Pulliam, RL
   Savage, C
   Agundez, M
   Cernicharo, J
   Guelin, M
   Ziurys, LM
AF Pulliam, R. L.
   Savage, C.
   Agundez, M.
   Cernicharo, J.
   Guelin, M.
   Ziurys, L. M.
TI IDENTIFICATION OF KCN IN IRC+10216: EVIDENCE FOR SELECTIVE CYANIDE
   CHEMISTRY
SO ASTROPHYSICAL JOURNAL LETTERS
LA English
DT Article
DE astrochemistry; circumstellar matter; line: identification; stars: AGB
   and post-AGB; stars: individual (IRC+10216)
ID VY CANIS MAJORIS; METAL CHEMISTRY; OXYGEN-RICH; 215-285 GHZ; MGNC;
   ENVELOPE; NACN; SPECTROSCOPY; MILLIMETER; ALF
AB A new interstellar molecule, KCN, has been identified toward the circumstellar envelope of the carbon-rich asymptotic giant branch star, IRC+10216-the fifth metal cyanide species to be detected in space. Fourteen rotational transitions of this T-shaped, asymmetric top were searched for in the frequency range of 83-250 GHz using the Arizona Radio Observatory (ARO) 12 m Kitt Peak antenna, the IRAM 30 m telescope, and the ARO Submillimeter Telescope. Distinct lines were measured for 10 of these transitions, including the K-a = 1 and 2 asymmetry components of the J = 11 -> 10 and J = 10 -> 9 transitions, i.e., the K-ladder structure distinct to an asymmetric top. These data are some of the most sensitive astronomical spectra at lambda similar to 1 and 3 mm obtained to date, with 3 sigma noise levels similar to 0.3 mK, made possible by new ALMA technology. The line profiles from the ARO and IRAM telescopes are consistent with a shell-like distribution for KCN with r(outer) similar to 15 '', but with an inner shell radius that extends into warmer gas. The column density for KCN in IRC+10216 was found to be N-tot approximate to 1.0 x 10(12) cm(-2) with a rotational temperature of T-rot similar to 53 K. The fractional abundance was calculated to be f(KCN/H-2) similar to 6 x 10(-10), comparable to that of KCl. The presence of KCN in IRC+10216, along with MgNC, MgCN, NaCN, and AlNC, suggests that cyanide/isocyanide species are the most common metal-containing molecules in carbon-rich circumstellar gas.
C1 [Pulliam, R. L.; Ziurys, L. M.] Univ Arizona, Dept Astron, Dept Chem, Tucson, AZ 85721 USA.
   [Savage, C.] Univ Arizona, Steward Observ, Tucson, AZ 85721 USA.
   [Savage, C.] Los Alamos Natl Lab, Appl Electromagnet IAT 2, Los Alamos, NM 87545 USA.
   [Agundez, M.] Observ Paris, LUTH, F-92190 Meudon, France.
   [Cernicharo, J.] CSIC INTA, Ctr Astrobiol, Dept Astrofis, Madrid 28850, Spain.
   [Guelin, M.] Inst Radioastron Millimetr, F-38406 St Martin Dheres, France.
   [Ziurys, L. M.] Univ Arizona, Arizona Radio Observ, Tucson, AZ 85721 USA.
RP Pulliam, RL (reprint author), Univ Arizona, Dept Astron, Dept Chem, 933 N Cherry Ave, Tucson, AZ 85721 USA.
RI Agundez, Marcelino/I-5369-2012
OI Agundez, Marcelino/0000-0003-3248-3564
FU NSF [AST-09-06534]; European Community [235753]
FX The research is funded by the NSF Grant AST-09-06534. M.A. is supported
   by a Marie Curie Intra-European Individual Fellowship within the
   European Community 7th Framework Programme under grant agreement no.
   235753.
NR 25
TC 25
Z9 25
U1 2
U2 4
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 2041-8205
J9 ASTROPHYS J LETT
JI Astrophys. J. Lett.
PD DEC 20
PY 2010
VL 725
IS 2
BP L181
EP L185
DI 10.1088/2041-8205/725/2/L181
PG 5
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 691AD
UT WOS:000285051400015
ER

PT J
AU Thanos, PK
   Tucci, A
   Stamos, J
   Robison, L
   Wang, GJ
   Anderson, BJ
   Volkow, ND
AF Thanos, Panayotis K.
   Tucci, Andrew
   Stamos, Joshua
   Robison, Lisa
   Wang, Gene-Jack
   Anderson, Brenda J.
   Volkow, Nora D.
TI Chronic forced exercise during adolescence decreases cocaine conditioned
   place preference in Lewis rats
SO BEHAVIOURAL BRAIN RESEARCH
LA English
DT Article
DE Dopamine; Exercise; Cocaine; Conditioned place preference
ID DOPAMINE D2 RECEPTOR; DIET-INDUCED OBESITY; SEX-DIFFERENCES; FEMALE
   RATS; LOCOMOTOR-ACTIVITY; AEROBIC EXERCISE; BIOLOGICAL BASIS; BRAIN
   DOPAMINE; FIRING RATE; WHEEL
AB Chronic physical activity (exercise) may be beneficial in the prevention of substance use disorders; however, the extent to which physical activity can interfere with the reinforcing effects of drugs during the adolescent period, which is one of great vulnerability for drug experimentation, has not been fully evaluated. Here, we assess the effects of chronic forced exercise during adolescence on preference for cocaine using the conditioned place preference (CPP) paradigm in male and female Lewis rats. The group of rats exposed to exercise ran on a treadmill for 6 weeks on a progressive time-increased schedule for up to 1 h of exercise per day, while the groups of sedentary rats remained in their home cage. Following the 6 weeks of exercise exposure, rats were tested for cocaine CPP. Results showed that chronic exercise significantly attenuated cocaine CPP in both males and females compared to a sedentary environment. Furthermore, male exercise rats failed to show significant cocaine CPP. In contrast, female exercise rats still showed cocaine CPP but it was significantly reduced compared to the female sedentary rats. Females also exhibited greater cocaine CPP than males overall. These findings suggest that strategies to promote physical activity during adolescence may be protective against cocaine abuse in both males and females, and these findings merit further investigation. We also corroborate a gender-specific sensitivity to the reinforcing effects of cocaine, highlighting the need to consider gender-tailored exercise interventions for drug abuse prevention. (C) 2010 Published by Elsevier B.V.
C1 [Thanos, Panayotis K.; Tucci, Andrew; Stamos, Joshua; Wang, Gene-Jack] Brookhaven Natl Lab, Dept Med, Behav Neuropharmacol & Neuroimaging Lab, Upton, NY 11973 USA.
   [Thanos, Panayotis K.; Robison, Lisa; Volkow, Nora D.] NIAAA, Lab Neuroimaging, NIH, Bethesda, MD 20892 USA.
   [Thanos, Panayotis K.; Anderson, Brenda J.] SUNY Stony Brook, Dept Psychol, Stony Brook, NY 11794 USA.
RP Thanos, PK (reprint author), Brookhaven Natl Lab, Dept Med, Behav Neuropharmacol & Neuroimaging Lab, Upton, NY 11973 USA.
EM thanos@bnl.gov
FU NIAAA [AA 11034, AA07574, AA07611]; SULI; IRTA
FX This work was supported by the NIAAA (AA 11034 & AA07574, AA07611). We
   also thank the SULI and IRTA programs for partial support of LSR. We
   also thank Joe Gatz for technical assistance with the equipment.
NR 60
TC 23
Z9 24
U1 0
U2 3
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0166-4328
J9 BEHAV BRAIN RES
JI Behav. Brain Res.
PD DEC 20
PY 2010
VL 215
IS 1
BP 77
EP 82
DI 10.1016/j.bbr.2010.06.033
PG 6
WC Behavioral Sciences; Neurosciences
SC Behavioral Sciences; Neurosciences & Neurology
GA 653GG
UT WOS:000282076500010
PM 20615434
ER

PT J
AU Ko, H
   Gourdon, O
   Gout, D
   Mun, ED
   Thimmaiah, S
   Miller, GJ
AF Ko, Hyunjin
   Gourdon, Olivier
   Gout, Delphine
   Mun, Eun-Deok
   Thimmaiah, Srinivasa
   Miller, Gordon J.
TI Rhombohedrally Distorted gamma-Brasses Cr1-xFexGa
SO INORGANIC CHEMISTRY
LA English
DT Article
ID QUASI-CRYSTAL APPROXIMANTS; PAIR DISTRIBUTION FUNCTION;
   ELECTRONIC-STRUCTURE; INTERMETALLIC COMPOUNDS; INTERGROWTH COMPOUNDS;
   MAGNETISM; PHASES; REFINEMENT; STABILITY; SOLIDS
AB A series of rhombohedrally distorted gamma-brass structures containing a mixture of magnetically active 3d elements, Cr and Fe, Cr1-xFexGa, is investigated crystallographically. These structures consist of chains of trans-face-sharing Ga-centered transition metal icosahedra. Neutron powder diffraction specifically. on Cr0.5Fe0.5Ga, which could be prepared as a single phase material, gave lattice constants (11 K) a = 12.5172(2) angstrom and c = 7.8325(2) angstrom and a refined composition of Cr0.502(6)Fe0.498Ga = Cr6.523Fe6.477Ga13 and revealed partial ordering of Cr and Fe atoms among three crystallographic sites. Magnetic susceptibility and magnetization studies, of Cr0.5Fe0.5Ga showed the onset of magnetic ordering at ca. 25 K. Theoretical calculations suggested both site-energy and bond-energy factors influencing the Cr/Fe distribution. Heteroatomic interactions significantly affect exchange interactions and create low local magnetic moments. Models created to mimic Cr0.5Fe0.5Ga showed ferromagnet c Fe-Fe and antiferromagnetic Cr-Fe interactions, with an overall ferrimagnetic ordering.
C1 [Ko, Hyunjin; Thimmaiah, Srinivasa; Miller, Gordon J.] Iowa State Univ, Dept Chem, Ames, IA 50011 USA.
   [Ko, Hyunjin; Thimmaiah, Srinivasa; Miller, Gordon J.] Ames Lab, Ames, IA 50011 USA.
   [Gourdon, Olivier; Gout, Delphine] Oak Ridge Natl Lab, Julich Ctr Neutron Sci Outstn SNS, Oak Ridge, TN 37831 USA.
   [Mun, Eun-Deok] Iowa State Univ, Dept Phys & Astron, Ames, IA 50011 USA.
RP Miller, GJ (reprint author), Iowa State Univ, Dept Chem, Ames, IA 50011 USA.
EM gmiller@iastate.edu
RI Thimmaiah, Srinivasa/H-1049-2012
FU U.S. Department of Energy [DE-AC02-07CH11358]; Materials Sciences
   Division of the Office of Basic Energy Sciences of the U.S. Department
   of Energy
FX This work was carried out at the Ames Laboratory, which is operated for
   the U.S. Department of Energy by Iowa State University under Contract
   No. DE-AC02-07CH11358. This work was supported by the Materials Sciences
   Division of the Office of Basic Energy Sciences of the U.S. Department
   of Energy.
NR 53
TC 5
Z9 5
U1 0
U2 8
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0020-1669
J9 INORG CHEM
JI Inorg. Chem.
PD DEC 20
PY 2010
VL 49
IS 24
BP 11505
EP 11515
DI 10.1021/ic101671k
PG 11
WC Chemistry, Inorganic & Nuclear
SC Chemistry
GA 694AJ
UT WOS:000285266800028
PM 21077651
ER

PT J
AU Naderi, NA
   Grillot, F
   Yang, K
   Wright, JB
   Gin, A
   Lester, LF
AF Naderi, Nader A.
   Grillot, Frederic
   Yang, Kai
   Wright, Jeremy B.
   Gin, Aaron
   Lester, Luke F.
TI Two-color multi-section quantum dot distributed feedback laser
SO OPTICS EXPRESS
LA English
DT Article
ID LOW-THRESHOLD CURRENT; TERAHERTZ TECHNOLOGY; SEMICONDUCTOR-LASERS;
   HIGH-SPEED; GENERATION; RADIATION; TEMPERATURE; DIODES; MODE; LINEWIDTH
AB A dual-wavelength emission source is realized by asymmetrically pumping a two-section quantum-dot distributed feedback laser. It is found that under asymmetric bias conditions, the powers between the ground-state and excited-state modes of the two-section device can be equalized, which is mainly attributed to the unique carrier dynamics of the quantum-dot gain medium. As a result, a two-color emission with an 8-THz frequency difference is realized that has potential as a compact THz source. It is also shown that the combination of significant inhomogeneous broadening and excited-state coupled mode operation allows the manipulation of the quantum-dot states through external optical stabilization. (C) 2010 Optical Society of America
C1 [Naderi, Nader A.; Yang, Kai; Lester, Luke F.] Univ New Mexico, Ctr High Technol Mat, Albuquerque, NM 87106 USA.
   [Grillot, Frederic] Univ Europeenne Bretagne, INSA, CNRS, Lab FOTON, F-35708 Rennes 7, France.
   [Wright, Jeremy B.; Gin, Aaron] Sandia Natl Labs, Ctr Integrated Nanotechnol, Albuquerque, NM 87185 USA.
RP Naderi, NA (reprint author), Univ New Mexico, Ctr High Technol Mat, 1313 Goddard SE, Albuquerque, NM 87106 USA.
EM nader@unm.edu
RI Gin, Aaron/E-3647-2010; Wright, Jeremy/G-7149-2011; Grillot,
   Frederic/N-5613-2014
OI Wright, Jeremy/0000-0001-6861-930X; 
FU Air Force Research Laboratory and Air Force Office of Scientific
   Research [FA8750-06-1-0085, FA9550-10-1-0276]; U.S. Department of
   Energy, Office of Basic Energy Sciences [DE-AC52-06NA25396,
   DE-AC04-94AL85000]
FX This work was performed, in part, at the Center for Integrated
   Nanotechnologies, a U.S. Department of Energy, Office of Basic Energy
   Sciences user facility at Los Alamos National Laboratory (Contract
   DE-AC52-06NA25396) and Sandia National Laboratories (Contract
   DE-AC04-94AL85000). This work was also supported by the Air Force
   Research Laboratory and Air Force Office of Scientific Research under
   Grant Numbers FA8750-06-1-0085 and FA9550-10-1-0276, respectively. The
   authors wish to thank Dr. Hui Su for valuable discussions on the use of
   LAPAREX.
NR 32
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PU OPTICAL SOC AMER
PI WASHINGTON
PA 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA
SN 1094-4087
J9 OPT EXPRESS
JI Opt. Express
PD DEC 20
PY 2010
VL 18
IS 26
BP 27028
EP 27035
DI 10.1364/OE.18.027028
PG 8
WC Optics
SC Optics
GA 698HF
UT WOS:000285584200041
PM 21196979
ER

PT J
AU Griffith, WC
   Knappe, S
   Kitching, J
AF Griffith, W. Clark
   Knappe, Svenja
   Kitching, John
TI Femtotesla atomic magnetometry in a microfabricated vapor cell
SO OPTICS EXPRESS
LA English
DT Article
AB We describe an optically pumped Rb-87 magnetometer with 5 fT/Hz(1/2) sensitivity when operated in the spin-exchange relaxation free (SERF) regime. The magnetometer uses a microfabricated vapor cell consisting of a cavity etched in a 1 mm thick silicon wafer with anodically bonded Pyrex windows. The measurement volume of the magnetometer is 1 mm(3), defined by the overlap region of a circularly polarized pump laser and a linearly polarized probe laser, both operated near 795 nm. Sensitivity limitations unique to the use of microfabricated cells are discussed. (C)2010 Optical Society of America
C1 [Griffith, W. Clark; Knappe, Svenja; Kitching, John] Natl Inst Stand & Technol, Div Time & Frequency, Boulder, CO 80305 USA.
   [Knappe, Svenja] Univ Colorado, Boulder, CO 80309 USA.
RP Griffith, WC (reprint author), Los Alamos Natl Lab, Subat Phys Grp P 25, POB 1663, Los Alamos, NM 87545 USA.
EM wclarkg@gmail.com
OI Kitching, John/0000-0002-4540-1954; Griffith, William
   Clark/0000-0002-0260-1956
FU Defense Advanced Research Projects Agency; NIST
FX Thanks to Susan Schima for help with vapor cell fabrication, and to Jan
   Preusser, Ricardo Jimenez-Martinez, and Rahul Mhaskar for valuable
   discussions. This work was supported by the Defense Advanced Research
   Projects Agency and NIST. This work is a partial contribution of NIST,
   an agency of the U.S. government, and is not subject to copyright.
NR 20
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PU OPTICAL SOC AMER
PI WASHINGTON
PA 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA
SN 1094-4087
J9 OPT EXPRESS
JI Opt. Express
PD DEC 20
PY 2010
VL 18
IS 26
BP 27167
EP 27172
DI 10.1364/OE.18.027167
PG 6
WC Optics
SC Optics
GA 698HF
UT WOS:000285584200005
PM 21196993
ER

PT J
AU Bae, T
   Jang, YC
   Jung, C
   Kim, HJ
   Kim, J
   Kim, J
   Kim, K
   Lee, W
   Sharpe, SR
   Yoon, B
AF Bae, Taegil
   Jang, Yong-Chull
   Jung, Chulwoo
   Kim, Hyung-Jin
   Kim, Jangho
   Kim, Jongjeong
   Kim, Kwangwoo
   Lee, Weonjong
   Sharpe, Stephen R.
   Yoon, Boram
CA SWME Collaboration
TI B-K using HYP-smeared staggered fermions in N-f = 2+1 unquenched QCD
SO PHYSICAL REVIEW D
LA English
DT Article
ID MATRIX-ELEMENTS; PARAMETER; OPERATORS
AB We present results for the kaon mixing parameter B-K calculated using HYP (hypercubic fat link)smeared improved staggered fermions on the asqtad lattices generated by the MILC collaboration. We use three lattice spacings (a approximate to 0.12, 0.09 and 0.06 fm), ten different valence-quark masses (m approximate to m(s)/10 - m(s)), and several light sea-quark masses in order to control the continuum and chiral extrapolations. We derive the next-to-leading order staggered chiral perturbation theory (SChPT) results necessary to fit our data, and use these results to do extrapolations based both on SU(2) and SU(3) SChPT. The SU(2) fitting is particularly straightforward because parameters related to taste breaking and matching errors appear only at next-to-next-to-leading order. We match to the continuum renormalization scheme [naive dimensional regularization (NDR)] using one-loop perturbation theory. Our final result is from the SU(2) analysis, with the SU(3) result providing a (less accurate) cross check. We find B-K(NDR, mu = 2 GeV) = 0.529 +/- 0.009 +/- 0.032 and (B) over cap (K) = B-K(RGI) = 0.724 +/- 0.012 +/- 0.043, where the first error is statistical and the second systematic. The error is dominated by the truncation error in the matching factor. Our results are consistent with those obtained using valence domain-wall fermions on lattices generated with asqtad or domain-wall sea quarks.
C1 [Bae, Taegil; Jang, Yong-Chull; Kim, Hyung-Jin; Kim, Jangho; Kim, Jongjeong; Kim, Kwangwoo; Lee, Weonjong; Yoon, Boram] Seoul Natl Univ, Lattice Gauge Theory Res Ctr, FPRD, Seoul 151747, South Korea.
   [Bae, Taegil; Jang, Yong-Chull; Kim, Hyung-Jin; Kim, Jangho; Kim, Jongjeong; Kim, Kwangwoo; Lee, Weonjong; Yoon, Boram] Seoul Natl Univ, Dept Phys & Astron, CTP, Seoul 151747, South Korea.
   [Jung, Chulwoo] Brookhaven Natl Lab, Dept Phys, Upton, NY 11973 USA.
   [Lee, Weonjong; Sharpe, Stephen R.] Univ Washington, Dept Phys, Seattle, WA 98195 USA.
RP Bae, T (reprint author), Seoul Natl Univ, Lattice Gauge Theory Res Ctr, FPRD, Seoul 151747, South Korea.
EM chulwoo@bnl.gov; wlee@snu.ac.kr; xsharpe@phys.washington.edu
FU US DOE [DE-AC02-98CH10886, DE-FG02-96ER40956]; Korean government (MEST)
   [3348-20090015]; Office of Science of the U.S. Department of Energy
FX C. Jung is supported by the US DOE under Grant No. DE-AC02-98CH10886.
   The research of W. Lee is supported by the Creative Research Initiatives
   program Grant No. (3348-20090015) of the NRF grant funded by the Korean
   government (MEST). The work of S. Sharpe is supported in part by the US
   DOE Grant No. DE-FG02-96ER40956. Computations for this work were carried
   out in part on QCDOC computers of the USQCD Collaboration at Brookhaven
   National Laboratory. The USQCD Collaboration are funded by the Office of
   Science of the U.S. Department of Energy.
NR 53
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 20
PY 2010
VL 82
IS 11
AR 114509
DI 10.1103/PhysRevD.82.114509
PG 37
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DK
UT WOS:000286567100003
ER

PT J
AU Keung, WY
   Low, I
   Shaughnessy, G
AF Keung, Wai-Yee
   Low, Ian
   Shaughnessy, Gabe
TI Confronting the direct search of low mass dark matter from CoGeNT data
   with antiproton PAMELA data
SO PHYSICAL REVIEW D
LA English
DT Article
ID ENERGIES; CDMS
AB If the excess events from the CoGeNT experiment arise from elastic scatterings of a light dark matter off the nuclei, crossing symmetry implies nonvanishing annihilation cross sections of the light dark matter into hadronic final states inside the Galactic halo, which we confront with the antiproton spectrum measured by the PAMELA Collaboration. We consider two types of effective interactions between the dark matter and the quarks: (1) contact interactions from integrating out heavy particles and (2) long-range interactions due to the electromagnetic properties of the dark matter. The lack of excess in the antiproton spectrum results in tensions for a scalar and, to a lesser extent, vector dark matter interacting with the quarks through the Higgs portal.
C1 [Keung, Wai-Yee] Univ Illinois, Dept Phys, Chicago, IL 60607 USA.
   [Low, Ian; Shaughnessy, Gabe] Argonne Natl Lab, Div High Energy Phys, Argonne, IL 60439 USA.
   [Low, Ian; Shaughnessy, Gabe] Northwestern Univ, Dept Phys & Astron, Evanston, IL 60208 USA.
RP Keung, WY (reprint author), Univ Illinois, Dept Phys, Chicago, IL 60607 USA.
FU U.S. Department of Energy [DE-AC02-06CH11357, DE-FG02-91ER40684,
   DE-FG02-84ER40173]
FX We thank V. Barger and D. Marfatia for helpful comments and Q.-H. Cao
   and H. Zhang for earlier collaborations. This work is supported in part
   by the U.S. Department of Energy under Contracts No. DE-AC02-06CH11357,
   No. DE-FG02-91ER40684, and No. DE-FG02-84ER40173.
NR 48
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2470-0010
EI 2470-0029
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 20
PY 2010
VL 82
IS 11
AR 115019
DI 10.1103/PhysRevD.82.115019
PG 8
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DK
UT WOS:000286567100007
ER

PT J
AU Nicmorus, D
   Eichmann, G
   Alkofer, R
AF Nicmorus, D.
   Eichmann, G.
   Alkofer, R.
TI Delta and omega electromagnetic form factors in a
   Dyson-Schwinger/Bethe-Salpeter approach
SO PHYSICAL REVIEW D
LA English
DT Article
ID CHIRAL PERTURBATION-THEORY; RELATIVISTIC QUARK-MODEL; BARYON
   MAGNETIC-MOMENTS; SYMMETRY-BREAKING; SKYRME MODEL; ELECTRO-EXCITATION;
   OCTUPOLE MOMENTS; VERTEX FUNCTION; HADRON PHYSICS; DIQUARK MODEL
AB We investigate the electromagnetic form factors of the Delta and the Omega baryons within the Poincare-covariant framework of Dyson-Schwinger and Bethe-Salpeter equations. The three-quark core contributions of the form factors are evaluated by employing a quark-diquark approximation. We use a consistent setup for the quark-gluon dressing, the quark-quark bound-state kernel and the quark-photon interaction. Our predictions for the multipole form factors are compatible with available experimental data and quark model estimates. The current-quark mass evolution of the static electromagnetic properties agrees with results provided by lattice calculations.
C1 [Nicmorus, D.] Goethe Univ Frankfurt, FIAS, D-60438 Frankfurt, Germany.
   [Nicmorus, D.] Thomas Jefferson Natl Accelerator Facil, Newport News, VA 23606 USA.
   [Eichmann, G.] Tech Univ Darmstadt, Inst Kernphys, D-64289 Darmstadt, Germany.
   [Alkofer, R.] Karl Franzens Univ Graz, Inst Phys, A-8010 Graz, Austria.
RP Nicmorus, D (reprint author), Goethe Univ Frankfurt, FIAS, D-60438 Frankfurt, Germany.
EM nicmorus@th.physik.uni-frankfurt.de
OI Eichmann, Gernot/0000-0002-0546-2533
FU Austrian Science Fund FWF [P20592-N16]; Erwin-Schrodinger-Stipendium
   [J3039]; Helmholtz Young Investigator Grant [VH-NG-332]; Helmholtz
   International Center
FX D. N. thanks D. Rischke for his support. We would also like to thank I.
   C. Cloet, C. S. Fischer, A. Krassnigg, G. Ramalho, and R. Williams for
   fruitful discussions. This work was supported by the Austrian Science
   Fund FWF under Project No. P20592-N16 and Erwin-Schrodinger-Stipendium
   No. J3039, by the Helmholtz Young Investigator Grant No. VH-NG-332, and
   by the Helmholtz International Center for FAIR within the framework of
   the LOEWE program launched by the State of Hesse, GSI, BMBF and DESY.
NR 89
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PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 20
PY 2010
VL 82
IS 11
AR 114017
DI 10.1103/PhysRevD.82.114017
PG 16
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DK
UT WOS:000286567100002
ER

PT J
AU Chen, YL
   Liu, ZK
   Analytis, JG
   Chu, JH
   Zhang, HJ
   Yan, BH
   Mo, SK
   Moore, RG
   Lu, DH
   Fisher, IR
   Zhang, SC
   Hussain, Z
   Shen, ZX
AF Chen, Y. L.
   Liu, Z. K.
   Analytis, J. G.
   Chu, J. -H.
   Zhang, H. J.
   Yan, B. H.
   Mo, S. -K.
   Moore, R. G.
   Lu, D. H.
   Fisher, I. R.
   Zhang, S. C.
   Hussain, Z.
   Shen, Z. -X.
TI Single Dirac Cone Topological Surface State and Unusual Thermoelectric
   Property of Compounds from a New Topological Insulator Family
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID TLBITE2; BI2TE3
AB Angle resolved photoemission spectroscopy study on TlBiTe2 and TlBiSe2 from a thallium-based ternary chalcogenides family revealed a single surface Dirac cone at the center of the Brillouin zone for both compounds. For TlBiSe2, the large bulk gap (similar to 200 meV) makes it a topological insulator with better mechanical properties than the previous binary 3D topological insualtor family. For TlBiTe2, the observed negative bulk gap indicates it as a semimetal, instead of a narrow-gap semiconductor as conventionally believed; this semimetality naturally explains its mysteriously small thermoelectric figure of merit comparing to other compounds in the family. Finally, the unique band structures of TlBiTe2 also suggest it as a candidate for topological superconductors.
C1 [Chen, Y. L.; Liu, Z. K.; Analytis, J. G.; Chu, J. -H.; Zhang, H. J.; Yan, B. H.; Moore, R. G.; Lu, D. H.; Fisher, I. R.; Zhang, S. C.; Shen, Z. -X.] SLAC Natl Accelerator Lab, Stanford Inst Mat & Energy Sci, Menlo Pk, CA 94025 USA.
   [Chen, Y. L.; Liu, Z. K.; Analytis, J. G.; Chu, J. -H.; Zhang, H. J.; Yan, B. H.; Fisher, I. R.; Zhang, S. C.; Shen, Z. -X.] Stanford Univ, Dept Phys & Appl Phys, Geballe Lab Adv Mat, Stanford, CA 94305 USA.
   [Chen, Y. L.; Mo, S. -K.; Hussain, Z.] Univ Calif Berkeley, Lawrence Berkeley Lab, Adv Light Source, Berkeley, CA 94720 USA.
RP Chen, YL (reprint author), SLAC Natl Accelerator Lab, Stanford Inst Mat & Energy Sci, 2575 Sand Hill Rd, Menlo Pk, CA 94025 USA.
RI Chen, Yulin/C-1918-2012; Zhang, Shou-Cheng/B-2794-2010; Yan, Binghai
   /D-2404-2013; Mo, Sung-Kwan/F-3489-2013
OI Yan, Binghai /0000-0003-2164-5839; Mo, Sung-Kwan/0000-0003-0711-8514
FU Department of Energy, Office of Basic Energy Science [DE-AC02-76SF00515]
FX We thank X. L. Qi and C. X. Liu for insightful discussions. This work is
   supported by the Department of Energy, Office of Basic Energy Science
   under Contract No. DE-AC02-76SF00515.
NR 30
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U1 13
U2 89
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 20
PY 2010
VL 105
IS 26
AR 266401
DI 10.1103/PhysRevLett.105.266401
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713RI
UT WOS:000286754700014
PM 21231687
ER

PT J
AU Giustino, F
   Louie, SG
   Cohen, ML
AF Giustino, Feliciano
   Louie, Steven G.
   Cohen, Marvin L.
TI Electron-Phonon Renormalization of the Direct Band Gap of Diamond
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID TEMPERATURE-DEPENDENCE; WANNIER FUNCTIONS; SEMICONDUCTORS; SYSTEMS;
   PSEUDOPOTENTIALS; ISOTOPE; ENERGY
AB We calculate from first principles the temperature-dependent renormalization of the direct band gap of diamond arising from electron-phonon interactions. The calculated temperature dependence is in good agreement with spectroscopic ellipsometry measurements, and the zero-point renormalization of the band gap is found to be as large as 0.6 eV. We also calculate the temperature-dependent broadening of the direct absorption edge and find good agreement with experiment. Our work calls for a critical revision of the band structures of other carbon-based materials calculated by neglecting electron-phonon interactions.
C1 [Giustino, Feliciano] Univ Oxford, Dept Mat, Oxford OX1 3PH, England.
   [Giustino, Feliciano; Louie, Steven G.; Cohen, Marvin L.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Giustino, Feliciano; Louie, Steven G.; Cohen, Marvin L.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
RP Giustino, F (reprint author), Univ Oxford, Dept Mat, Parks Rd, Oxford OX1 3PH, England.
RI Giustino, Feliciano/F-6343-2013; 
OI Giustino, Feliciano/0000-0001-9293-1176
FU NSF [DMR10-1006184]; Office of Science, Office of Basic Energy Sciences,
   Materials Sciences and Engineering Division; U.S. DOE
   [DE-AC02-05CH11231]; ERC under European Community [239578]
FX The authors are grateful to Manuel Cardona and Philip Allen for fruitful
   discussions. This work was supported by NSF Grant No. DMR10-1006184 (GW
   methodology and computation), by the Director, Office of Science, Office
   of Basic Energy Sciences, Materials Sciences and Engineering Division,
   and the U.S. DOE under Contract No. DE-AC02-05CH11231 (electron-phonon
   codes and calculations). This work has also received funding from the
   ERC under the European Community's 7th Framework Programme Grant No.
   239578. Part of the calculations were performed at the Oxford
   Supercomputing Centre.
NR 33
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PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 20
PY 2010
VL 105
IS 26
AR 265501
DI 10.1103/PhysRevLett.105.265501
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713RI
UT WOS:000286754700010
PM 21231677
ER

PT J
AU Khachatryan, V
   Sirunyan, AM
   Tumasyan, A
   Adam, W
   Bergauer, T
   Dragicevic, M
   Ero, J
   Fabjan, C
   Friedl, M
   Fruhwirth, R
   Ghete, VM
   Hammer, J
   Hansel, S
   Hartl, C
   Hoch, M
   Horman, N
   Hrubec, J
   Jeitler, M
   Kasieczka, G
   Kiesenhofer, W
   Krammer, M
   Liko, D
   Mikulec, I
   Pernicka, M
   Rohringer, H
   Schofbeck, R
   Strauss, J
   Taurok, A
   Teischinger, F
   Waltenberger, W
   Walzel, G
   Widl, E
   Wulz, CE
   Mossolov, V
   Shumeiko, N
   Gonzalez, JS
   Benucci, L
   Ceard, L
   De Wolf, EA
   Janssen, X
   Maes, T
   Mucibello, L
   Ochesanu, S
   Roland, B
   Rougny, R
   Selvaggi, M
   Van Haevermaet, H
   Van Mechelen, P
   Van Remortel, N
   Adler, V
   Beauceron, S
   Blyweert, S
   D'Hondt, J
   Devroede, O
   Kalogeropoulos, A
   Maes, J
   Maes, M
   Tavernier, S
   Van Doninck, W
   Van Mulders, P
   Van Onsem, GP
   Villella, I
   Charaf, O
   Clerbaux, B
   De Lentdecker, G
   Dero, V
   Gay, APR
   Hammad, GH
   Hreus, T
   Marage, PE
   Thomas, L
   Velde, CV
   Vanlaer, P
   Wickens, J
   Costantini, S
   Grunewald, M
   Klein, B
   Marinov, A
   Ryckbosch, D
   Thyssen, F
   Tytgat, M
   Vanelderen, L
   Verwilligen, P
   Walsh, S
   Zaganidis, N
   Basegmez, S
   Bruno, G
   Caudron, J
   De Jeneret, JD
   Delaere, C
   Demin, P
   Favart, D
   Giammanco, A
   Gregoire, G
   Hollar, J
   Lemaitre, V
   Militaru, O
   Ovyn, S
   Pagano, D
   Pin, A
   Piotrzkowski, K
   Quertenmont, L
   Schul, N
   Beliy, N
   Caebergs, T
   Daubie, E
   Alves, GA
   De JesusDamiao, D
   Pol, ME
   Souza, MHG
   Carvalho, W
   Da Costa, EM
   Martins, CD
   De Souza, SF
   Mundim, L
   Nogima, H
   Oguri, V
   Goicochea, JMO
   Da Silva, WLP
   Santoro, A
   Do Amaral, SMS
   Sznajder, A
   De Araujo, FTD
   Dias, FA
   Dias, MAF
   Tomei, TRFP
   Gregores, EM
   Marinho, F
   Novaes, SF
   Padula, SS
   Darmenov, N
   Dimitrov, L
   Genchev, V
   Iaydjiev, P
   Piperov, S
   Rodozov, M
   Stoykova, S
   Sultanov, G
   Tcholakov, V
   Trayanov, R
   Vankov, I
   Dyulendarova, M
   Hadjiiska, R
   Kozhuharov, V
   Litov, L
   Marinova, E
   Mateev, M
   Pavlov, B
   Petkov, P
   Bian, JG
   Chen, GM
   Chen, HS
   Jiang, CH
   Liang, D
   Liang, S
   Wang, J
   Wang, J
   Wang, X
   Wang, Z
   Yang, M
   Zang, J
   Zhang, Z
   Ban, Y
   Guo, S
   Hu, Z
   Li, W
   Mao, Y
   Qian, SJ
   Teng, H
   Zhu, B
   Cabrera, A
   Moreno, BG
   Rios, AAO
   Oliveros, AFO
   Sanabria, JC
   Godinovic, N
   Lelas, D
   Lelas, K
   Plestina, R
   Polic, D
   Puljak, I
   Antunovic, Z
   Dzelalija, M
   Brigljevic, V
   Duric, S
   Kadija, K
   Morovic, S
   Attikis, A
   Fereos, R
   Galanti, M
   Mousa, J
   Nicolaou, C
   Ptochos, F
   Razis, PA
   Rykaczewski, H
   Abdel-Basit, A
   Assran, Y
   Mahmoud, MA
   Hektor, A
   Kadastik, M
   Kannike, K
   Ntel, MM
   Raidal, M
   Rebane, L
   Azzolini, V
   Eerola, P
   Czellar, S
   Harkonen, J
   Heikkinen, A
   Karimaki, V
   Kinnunen, R
   Klem, J
   Kortelainen, MJ
   Lampen, T
   Lassila-Perini, K
   Lehti, S
   Linden, T
   Luukka, P
   Maenpaa, T
   Tuominen, E
   Tuominiemi, J
   Tuovinen, E
   Ungaro, D
   Wendland, L
   Banzuzi, K
   Korpela, A
   Tuuva, T
   Sillou, D
   Besancon, M
   Dejardin, M
   Denegri, D
   Fabbro, B
   Faure, JL
   Ferri, F
   Ganjour, S
   Gentit, FX
   Givernaud, A
   Gras, P
   de Monchenault, GH
   Jarry, P
   Locci, E
   Malcles, J
   Marionneau, M
   Millischer, L
   Rander, J
   Rosowsky, A
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CA CMS Collaboration
TI Search for Quark Compositeness with the Dijet Centrality Ratio in pp
   Collisions at root s=7 TeV
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID PHENOMENOLOGY; DISTRIBUTIONS; COLLIDER; LIMIT
AB A search for quark compositeness in the form of quark contact interactions, based on hadronic jet pairs (dijets) produced in proton-proton collisions at root s = 7 eV, is described. The data sample of the study corresponds to an integrated luminosity of 2.9 pb(-1) collected with the CMS detector at the LHC. The dijet centrality ratio, which quantifies the angular distribution of the dijets, is measured as a function of the invariant mass of the dijet system and is found to agree with the predictions of the standard model. A statistical analysis of the data provides a lower limit on the energy scale of quark contact interactions. The sensitivity of the analysis is such that the expected limit is 2.9 TeV; because the observed value of the centrality ratio at high invariant mass is below the expectation, the observed limit is 4.0 TeV at the 95% confidence level.
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   [Buontempo, S.; Montoya, C. A. Carrillo; Cimmino, A.; De Cosa, A.; De Gruttola, M.; Fabozzi, F.; Iorio, A. O. M.; Lista, L.; Noli, P.; Paolucci, P.] Ist Nazl Fis Nucl, Sez Napoli, I-80125 Naples, Italy.
   [Cimmino, A.; De Cosa, A.; De Gruttola, M.; Noli, P.] Univ Naples Federico II, Naples, Italy.
   [Azzi, P.; Bacchetta, N.; Bellan, P.; Bellato, M.; Branca, A.; Carlin, R.; De Mattia, M.; Dorigo, T.; Gasparini, F.; Gasparini, U.; Giubilato, P.; Gonella, F.; Gresele, A.; Gulmini, M.; Kaminskiy, A.; Lacaprara, S.; Lazzizzera, I.; Margoni, M.; Meneguzzo, A. T.; Nespolo, M.; Pegoraro, M.; Perrozzi, L.; Pozzobon, N.; Ronchese, P.; Simonetto, F.; Torassa, E.; Tosi, M.; Triossi, A.; Vanini, S.; Zotto, P.] Ist Nazl Fis Nucl, Sez Padova, Padua, Italy.
   [Bellan, P.; Carlin, R.; De Mattia, M.; Gasparini, F.; Giubilato, P.; Kaminskiy, A.; Margoni, M.; Meneguzzo, A. T.; Pozzobon, N.; Ronchese, P.; Simonetto, F.; Tosi, M.; Vanini, S.; Zotto, P.] Univ Padua, Padua, Italy.
   [Gresele, A.; Lazzizzera, I.] Univ Trento Trento, Padua, Italy.
   [Baesso, P.; Berzano, U.; Riccardi, C.; Torre, P.; Vitulo, P.; Viviani, C.] Ist Nazl Fis Nucl, Sez Pavia, I-27100 Pavia, Italy.
   [Baesso, P.; Riccardi, C.; Torre, P.; Vitulo, P.; Viviani, C.] Univ Pavia, I-27100 Pavia, Italy.
   [Biasini, M.; Bilei, G. M.; Caponeri, B.; Fano, L.; Lariccia, P.; Lucaroni, A.; Mantovani, G.; Menichelli, M.; Nappi, A.; Santocchia, A.; Servoli, L.; Taroni, S.; Valdata, M.; Volpe, R.] Ist Nazl Fis Nucl, Sez Perugia, I-06100 Perugia, Italy.
   [Biasini, M.; Caponeri, B.; Fano, L.; Lariccia, P.; Lucaroni, A.; Mantovani, G.; Nappi, A.; Santocchia, A.; Taroni, S.; Valdata, M.; Volpe, R.] Univ Perugia, I-06100 Perugia, Italy.
   [Azzurri, P.; Bagliesi, G.; Bernardini, J.; Boccali, T.; Castaldi, R.; D'Agnolo, R. T.; Dell'Orso, R.; Fiori, F.; Foa, L.; Giassi, A.; Kraan, A.; Ligabue, F.; Lomtadze, T.; Martini, L.; Messineo, A.; Palla, F.; Palmonari, F.; Sarkar, S.; Segneri, G.; Serban, A. T.; Spagnolo, P.; Tenchini, R.; Tonelli, G.; Venturi, A.; Verdini, P. G.] Ist Nazl Fis Nucl, Sez Pisa, Pisa, Italy.
   [Bernardini, J.; Fiori, F.; Messineo, A.; Tonelli, G.] Univ Pisa, Pisa, Italy.
   [Azzurri, P.; D'Agnolo, R. T.; Foa, L.; Ligabue, F.; Sarkar, S.] Scuola Normale Super Pisa, Pisa, Italy.
   [Barone, L.; Cavallari, F.; Del Re, D.; Di Marco, E.; Diemoz, M.; Franci, D.; Grassi, M.; Longo, E.; Organtini, G.; Palma, A.; Pandolfi, F.; Paramatti, R.; Rahatlou, S.] Ist Nazl Fis Nucl, Sez Roma, Rome, Italy.
   [Barone, L.; Del Re, D.; Di Marco, E.; Franci, D.; Longo, E.; Organtini, G.; Palma, A.; Pandolfi, F.; Rahatlou, S.] Univ Roma La Sapienza, Rome, Italy.
   [Amapane, N.; Arcidiacono, R.; Argiro, S.; Arneodo, M.; Biino, C.; Botta, C.; Cartiglia, N.; Castello, R.; Costa, M.; Demaria, N.; Graziano, A.; Mariotti, C.; Marone, M.; Maselli, S.; Migliore, E.; Mila, G.; Monaco, V.; Musich, M.; Obertino, M. M.; Pastrone, N.; Pelliccioni, M.; Romero, A.; Ruspa, M.; Sacchi, R.; Sola, V.; Solano, A.; Staiano, A.; Trocino, D.; Pereira, A. Vilela] Ist Nazl Fis Nucl, Sez Torino, I-10125 Turin, Italy.
   [Amapane, N.; Argiro, S.; Botta, C.; Castello, R.; Costa, M.; Graziano, A.; Marone, M.; Migliore, E.; Mila, G.; Monaco, V.; Musich, M.; Pelliccioni, M.; Romero, A.; Sacchi, R.; Sola, V.; Solano, A.; Trocino, D.; Pereira, A. Vilela] Univ Turin, Turin, Italy.
   [Arcidiacono, R.; Arneodo, M.; Obertino, M. M.; Ruspa, M.] Univ Piemonte Orientale Novara, Turin, Italy.
   [Ambroglini, F.; Della Ricca, G.; Montanino, D.] Univ Trieste, Trieste, Italy.
   [Ambroglini, F.; Belforte, S.; Cossutti, F.; Della Ricca, G.; Gobbo, B.; Montanino, D.; Penzo, A.] Ist Nazl Fis Nucl, Sez Trieste, Trieste, Italy.
   [Heo, S. G.] Kangwon Natl Univ, Chunchon, South Korea.
   [Chang, S.; Chung, J.; Kim, D. H.; Kim, G. N.; Kim, J. E.; Kong, D. J.; Park, H.; Son, D.; Son, D. C.] Kyungpook Natl Univ, Taegu, South Korea.
   [Kim, Zero; Kim, J. Y.; Song, S.] Chonnam Natl Univ, Inst Universe & Elementary Particles, Kwangju, South Korea.
   [Choi, S.; Hong, B.; Jo, M.; Kim, H.; Kim, J. H.; Kim, T. J.; Lee, K. S.; Moon, D. H.; Park, S. K.; Rhee, H. B.; Seo, E.; Shin, S.; Sim, K. S.] Korea Univ, Seoul, South Korea.
   [Choi, M.; Kang, S.; Kim, H.; Park, C.; Park, I. C.; Park, S.; Ryu, G.] Univ Seoul, Seoul, South Korea.
   [Choi, Y.; Choi, Y. K.; Goh, J.; Lee, J.; Lee, S.; Seo, H.; Yu, I.] Sungkyunkwan Univ, Suwon, South Korea.
   [Grigelionis, I.; Janulis, M.; Martisiute, D.; Petrov, P.; Sabonis, T.] Vilnius Univ, Vilnius, Lithuania.
   [Castilla Valdez, H.; De La Cruz Burelo, E.; Lopez-Fernandez, R.; Sanchez-Fernandez, A.; Villasenor-Cendejas, L. M.] IPN, Ctr Invest & Estudios Avanzados, Mexico City 07738, DF, Mexico.
   [Carrillo Moreno, S.; Vazquez Valencia, F.] Univ Iberoamer, Mexico City, DF, Mexico.
   [Salazar Ibarguen, H. A.] Benemerita Univ Autonoma Puebla, Puebla, Mexico.
   [Casimiro Linares, E.; Morelos Pineda, A.; Reyes-Santos, M. A.] Univ Autonoma San Luis Potosi, San Luis Potosi, Mexico.
   [Allfrey, P.; Krofcheck, D.; Tam, J.] Univ Auckland, Auckland 1, New Zealand.
   [Butler, P. H.; Doesburg, R.; Silverwood, H.] Univ Canterbury, Christchurch 1, New Zealand.
   [Ahmad, M.; Ahmed, I.; Asghar, M. I.; Hoorani, H. R.; Khan, W. A.; Khurshid, T.] Quaid I Azam Univ, Natl Ctr Phys, Islamabad, Pakistan.
   [Qazi, S.; Cwiok, M.; Dominik, W.; Doroba, K.; Kalinowski, A.; Konecki, M.; Krolikowski, J.] Univ Warsaw, Inst Expt Phys, Warsaw, Poland.
   [Frueboes, T.; Gokieli, R.; Gorski, M.; Kazana, M.; Nawrocki, K.; Szleper, M.; Wrochna, G.; Zalewski, P.] Soltan Inst Nucl Studies, PL-00681 Warsaw, Poland.
   [Almeida, N.; David, A.; Faccioli, P.; Parracho, P. G. Ferreira; Gallinaro, M.; Martins, P.; Mini, G.; Musella, P.; Nayak, A.; Raposo, L.; Ribeiro, P. Q.; Seixas, J.; Silva, P.; Soares, D.; Varela, J.; Woehri, H. K.] Lab Instrumentacao & Fis Expt Particulas, Lisbon, Portugal.
   [Belotelov, I.; Bunin, P.; Finger, M.; Finger, M. J. R.; Golutvin, I.; Kamenev, A.; Karjavin, V.; Kozlov, G.; Lanev, A.; Moisenz, P.; Palichik, V.; Perelygin, V.; Shmatov, S.; Smirnov, V.; Volodko, A.; Zarubin, A.] Joint Inst Nucl Res, Dubna, Russia.
   [Bondar, N.; Golovtsov, V.; Ivanov, Y.; Kim, V.; Levchenko, P.; Murzin, V.; Oreshkin, V.; Smirnov, I.; Sulimov, V.; Uvarov, L.; Vavilov, S.; Vorobyev, A.] Petersburg Nucl Phys Inst, St Petersburg, Russia.
   [Andreev, Yu.; Gninenko, S.; Golubev, N.; Kirsanov, M.; Krasnikov, N.; Matveev, V.; Pashenkov, A.; Toropin, A.; Troitsky, S.] Russian Acad Sci, Inst Nucl Res, Moscow, Russia.
   [Epshteyn, V.; Gavrilov, V.; Kaftanov, V.; Kossov, M.; Krokhotin, A.; Lychkovskaya, N.; Safronov, G.; Semenov, S.; Shreyber, I.; Stolin, V.; Vlasov, E.; Zhokin, A.] Inst Theoret & Expt Phys, Moscow 117259, Russia.
   [Boos, E.; Dubinin, M.; Dudko, L.; Ershov, A.; Gribushin, A.; Kodolova, O.; Lokhtin, I.; Obraztsov, S.; Petrushanko, S.; Sarycheva, L.; Savrin, V.; Snigirev, A.] Moscow MV Lomonosov State Univ, Moscow, Russia.
   [Andreev, V.; Azarkin, M.; Dremin, I.; Kirakosyan, M.; Rusakov, S. V.; Vinogradov, A.] PN Lebedev Phys Inst, Moscow 117924, Russia.
   [Azhgirey, I.; Bitioukov, S.; Grishin, V.; Kachanov, V.; Konstantinov, D.; Krychkine, V.; Petrov, V.; Ryutin, R.; Slabospitsky, S.; Sobol, A.; Tourtchanovitch, L.; Troshin, S.; Tyurin, N.; Uzunian, A.; Volkov, A.] Inst High Energy Phys, State Res Ctr Russian Federat, Protvino, Russia.
   [Adzic, P.; Djordjevic, M.; Krpic, D.; Milosevic, J.] Univ Belgrade, Fac Phys, Belgrade 11001, Serbia.
   [Adzic, P.; Djordjevic, M.; Krpic, D.; Milosevic, J.] Vinca Inst Nucl Sci, Belgrade, Serbia.
   [Aguilar-Benitez, M.; Alcaraz Maestre, J.; Arce, P.; Battilana, C.; Calvo, E.; Cepeda, M.; Cerrada, M.; Colino, N.; De La Cruz, B.; Diez Pardos, C.; Fernandez Bedoya, C.; Ramos, J. P. Fernandez; Ferrando, A.; Flix, J.; Fouz, M. C.; Garcia-Abia, P.; Gonzalez Lopez, O.; Goy Lopez, S.; Hernandez, J. M.; Josa, M. I.; Merino, G.; Puerta Pelayo, J.; Redondo, I.; Romero, L.; Santaolalla, J.; Willmott, C.] CIEMAT, E-28040 Madrid, Spain.
   [Albajar, C.; Codispoti, G.; de Troconiz, J. F.] Univ Autonoma Madrid, Madrid, Spain.
   [Cuevas, J.; Fernandez Menendez, J.; Folgueras, S.; Gonzalez Caballero, I.; Lloret Iglesias, L.; Vizan Garcia, J. M.] Univ Oviedo, Oviedo, Spain.
   [Cabrillo, I. J.; Calderon, A.; Chamizo Llatas, M.; Chuang, S. H.; Duarte Campderros, J.; Felcini, M.; Fernandez, M.; Gomez, G.; Gonzalez Sanchez, J.; Gonzalez Suarez, R.; Jorda, C.; Lobelle Pardo, P.; Lopez Virto, A.; Marco, J.; Marco, R.; Martinez Rivero, C.; Matorras, F.; Piedra Gomez, J.; Rodrigo, T.; Ruiz Jimeno, A.; Scodellaro, L.; Sobron Sanudo, M.; Vila, I.; Vilar Cortabitarte, R.] Univ Cantabria, CSIC, IFCA, E-39005 Santander, Spain.
   [Abbaneo, D.; Auffray, E.; Baillon, P.; Ball, A. H.; Barney, D.; Beaudette, F.; Bell, A. J.; Benedetti, D.; Bernet, C.; Bialas, W.; Bloch, P.; Bocci, A.; Bolognesi, S.; Breuker, H.; Brona, G.; Bunkowski, K.; Camporesi, T.; Cano, E.; Cerminara, G.; Christiansen, T.; Perez, J. A. Coarasa; Covarelli, R.; Cure, B.; D'Enterria, D.; Dahms, T.; De Roeck, A.; Elliott-Peisert, A.; Funk, W.; Gaddi, A.; Gennai, S.; Georgiou, G.; Gerwig, H.; Gigi, D.; Gill, K.; Giordano, D.; Glege, F.; Garrido, R. Gomez-Reino; Gouzevitch, M.; Gowdy, S.; Guiducci, L.; Hansen, M.; Harvey, J.; Hegeman, J.; Hegner, B.; Henderson, C.; Hoffmann, H. F.; Honma, A.; Innocente, V.; Janot, P.; Karavakis, E.; Lecoq, P.; Leonidopoulos, C.; Lourenco, C.; Macpherson, A.; Maeki, T.; Malgeri, L.; Mannelli, M.; Masetti, L.; Meijers, F.; Mersi, S.; Meschi, E.; Moser, R.; Mozer, M. U.; Mulders, M.; Nesvold, E.; Orimoto, T.; Orsini, L.; Perez, E.; Petrilli, A.; Pfeiffer, A.; Pierini, M.; Pimiae, M.; Polese, G.; Racz, A.; Rolandi, G.; Rovelli, C.; Rovere, M.; Sakulin, H.; Schaefer, C.; Schwick, C.; Segoni, I.; Sharma, A.; Siegrist, P.; Simon, M.; Sphicas, P.; Spiga, D.; Spiropulu, M.; Stoeckli, F.; Stoye, M.; Tropea, P.; Tsirou, A.; Veres, G. I.; Vichoudis, P.; Voutilainen, M.; Zeuner, W. D.] CERN, European Org Nucl Res, CH-1211 Geneva, Switzerland.
   [Bertl, W.; Deiters, K.; Erdmann, W.; Gabathuler, K.; Horisberger, R.; Ingram, Q.; Kaestli, H. C.; Koenig, S.; Kotlinski, D.; Langenegger, U.; Meier, F.; Renker, D.; Rohe, T.; Sibille, J.; Starodumov, A.] Paul Scherrer Inst, Villigen, Switzerland.
   [Caminada, L.; Chen, Z.; Cittolin, S.; Dissertori, G.; Dittmar, M.; Eugster, J.; Freudenreich, K.; Grab, C.; Herve, A.; Hintz, W.; Lecomte, P.; Lustermann, W.; Marchica, C.; del Arbol, P. Martinez Ruiz; Meridiani, P.; Milenovic, P.; Moortgat, F.; Nardulli, A.; Nef, P.; Nessi-Tedaldi, F.; Pape, L.; Pauss, F.; Punz, T.; Rizzi, A.; Ronga, F. J.; Sala, L.; Sanchez, A. K.; Sawley, M. -C.; Stieger, B.; Tauscher, L.; Thea, A.; Theofilatos, K.; Treille, D.; Urscheler, C.; Wallny, R.; Weber, M.; Wehrli, L.; Weng, J.] ETH, Inst Particle Phys, Zurich, Switzerland.
   [Aguilo, E.; Amsler, C.; Chiochia, V.; De Visscher, S.; Favaro, C.; Rikova, M. Ivova; Jaeger, A.; Mejias, B. Millan; Regenfus, C.; Robmann, P.; Rommerskirchen, T.; Schmidt, A.; Snoek, H.; Wilke, L.] Univ Zurich, Zurich, Switzerland.
   [Chang, Y. H.; Chen, K. H.; Chen, W. T.; Dutta, S.; Go, A.; Kuo, C. M.; Li, S. W.; Lin, W.; Liu, M. H.; Liu, Z. K.; Lu, Y. J.; Wu, J. H.; Yu, S. S.] Natl Cent Univ, Chungli, Taiwan.
   [Lu, Y. J.; Bartalini, P.; Chang, P.; Chang, Y. H.; Chang, Y. W.; Chao, Y.; Chen, K. F.; Hou, W. -S.; Hsiung, Y.; Kao, K. Y.; Lei, Y. J.; Lu, R. -S.; Shiu, J. G.; Tzeng, Y. M.; Wang, M.; Wei, J. T.] Natl Taiwan Univ, Taipei 10764, Taiwan.
   [Adiguzel, A.; Bakirci, M. N.; Cerci, S.; Demir, Z.; Dozen, C.; Dumanoglu, I.; Eskut, E.; Girgis, S.; Gokbulut, G.; Guler, Y.; Gurpinar, E.; Hos, I.; Kangal, E. E.; Karaman, T.; Topaksu, A. Kayis; Nart, A.; Onengut, G.; Ozdemir, K.; Ozturk, S.; Polatoz, A.; Sogut, K.; Tali, B.; Topakli, H.; Uzun, D.; Vergili, L. N.; Vergili, M.; Zorbilmez, C.] Cukurova Univ, Adana, Turkey.
   [Akin, I. V.; Aliev, T.; Bilmis, S.; Deniz, M.; Gamsizkan, H.; Guler, A. M.; Ocalan, K.; Ozpineci, A.; Serin, M.; Sever, R.; Surat, U. E.; Yildirim, E.; Zeyrek, M.] Middle E Tech Univ, Dept Phys, TR-06531 Ankara, Turkey.
   [Deliomeroglu, M.; Demir, D.; Gulmez, E.; Halu, A.; Isildak, B.; Kaya, M.; Kaya, O.; Ozbek, M.; Ozkorucuklu, S.; Sonmez, N.] Bogazici Univ, Istanbul, Turkey.
   [Levchuk, L.] Kharkov Inst Phys & Technol, Natl Sci Ctr, Kharkov, Ukraine.
   [Bell, P.; Bostock, F.; Brooke, J. J.; Cheng, T. L.; Cussans, D.; Frazier, R.; Goldstein, J.; Grimes, M.; Hansen, M.; Heath, G. P.; Heath, H. F.; Huckvale, B.; Jackson, J.; Kreczko, L.; Metson, S.; Newbold, D. M.; Nirunpong, K.; Poll, A.; Smith, V. J.; Ward, S.] Univ Bristol, Bristol, Avon, England.
   [Basso, L.; Bell, K. W.; Belyaev, A.; Brew, C.; Brown, R. M.; Camanzi, B.; Cockerill, D. J. A.; Coughlan, J. A.; Harder, K.; Harper, S.; Kennedy, B. W.; Olaiya, E.; Petyt, D.; Radburn-Smith, B. C.; Shepherd-Themistocleous, C. H.; Tomalin, I. R.; Womersley, W. J.; Worm, S. D.] Rutherford Appleton Lab, Didcot OX11 0QX, Oxon, England.
   [Bainbridge, R.; Ball, G.; Ballin, J.; Beuselinck, R.; Buchmuller, O.; Colling, D.; Cripps, N.; Cutajar, M.; Davies, G.; Della Negra, M.; Fulcher, J.; Futyan, D.; Bryer, A. Guneratne; Hall, G.; Hatherell, Z.; Hays, J.; Iles, G.; Karapostoli, G.; Lyons, L.; Magnan, A. -M.; Marrouche, J.; Nandi, R.; Nash, J.; Nikitenko, A.; Papageorgiou, A.; Pesaresi, M.; Petridis, K.; Pioppi, M.; Raymond, D. M.; Rompotis, N.; Rose, A.; Ryan, M. J.; Seez, C.; Sharp, P.; Sparrow, A.; Tapper, A.; Tourneur, S.; Acosta, M. Vazquez; Virdee, T.; Wakefield, S.; Wardrope, D.; Whyntie, T.] Univ London Imperial Coll Sci Technol & Med, London, England.
   [Barrett, M.; Chadwick, M.; Cole, J. E.; Hobson, P. R.; Khan, A.; Kyberd, P.; Leslie, D.; Martin, W.; Reid, I. D.; Teodorescu, L.] Brunel Univ, Uxbridge UB8 3PH, Middx, England.
   [Hatakeyama, K.] Baylor Univ, Waco, TX 76798 USA.
   [Bose, T.; Jarrin, E. Carrera; Clough, A.; Fantasia, C.; Heister, A.; St John, J.; Lawson, P.; Lazic, D.; Rohlf, J.; Sperka, D.; Sulak, L.] Boston Univ, Boston, MA 02215 USA.
   [Avetisyan, A.; Bhattacharya, S.; Chou, J. P.; Cutts, D.; Esen, S.; Ferapontov, A.; Heintz, U.; Jabeen, S.; Kukartsev, G.; Landsberg, G.; Narain, M.; Nguyen, D.; Segala, M.; Speer, T.; Tsang, K. V.] Brown Univ, Providence, RI 02912 USA.
   [Borgia, M. A.; Breedon, R.; Sanchez, M. Calderon De La Barca; Cebra, D.; Chertok, M.; Conway, J.; Cox, P. T.; Dolen, J.; Erbacher, R.; Friis, E.; Ko, W.; Kopecky, A.; Lander, R.; Liu, H.; Maruyama, S.; Miceli, T.; Nikolic, M.; Pellett, D.; Robles, J.; Schwarz, T.; Searle, M.; Smith, J.; Squires, M.; Tripathi, M.; Sierra, R. Vasquez; Veelken, C.] Univ Calif Davis, Davis, CA 95616 USA.
   [Andreev, V.; Arisaka, K.; Cline, D.; Cousins, R.; Deisher, A.; Duris, J.; Erhan, S.; Farrell, C.; Hauser, J.; Ignatenko, M.; Jarvis, C.; Plager, C.; Rakness, G.; Schlein, P.; Tucker, J.; Valuev, V.] Univ Calif Los Angeles, Los Angeles, CA 90095 USA.
   [Babb, J.; Clare, R.; Ellison, J.; Gary, J. W.; Giordano, F.; Hanson, G.; Jeng, G. Y.; Kao, S. C.; Liu, F.; Liu, H.; Luthra, A.; Nguyen, H.; Pasztor, G.; Satpathy, A.; Shen, B. C.; Stringer, R.; Sturdy, J.; Sumowidagdo, S.; Wilken, R.; Wimpenny, S.] Univ Calif Riverside, Riverside, CA 92521 USA.
   [Andrews, W.; Branson, J. G.; Dusinberre, E.; Evans, D.; Golf, F.; Holzner, A.; Kelley, R.; Lebourgeois, M.; Letts, J.; Mangano, B.; Muelmenstaedt, J.; Padhi, S.; Palmer, C.; Petrucciani, G.; Pi, H.; Pieri, M.; Ranieri, R.; Sani, M.; Sharma, V.; Simon, S.; Tu, Y.; Vartak, A.; Wuerthwein, F.; Yagil, A.] Univ Calif San Diego, La Jolla, CA 92093 USA.
   [Barge, D.; Bellan, R.; Campagnari, C.; D'Alfonso, M.; Danielson, T.; Geffert, P.; Incandela, J.; Justus, C.; Kalavase, P.; Koay, S. A.; Kovalskyi, D.; Krutelyov, V.; Lowette, S.; Mccoll, N.; Pavlunin, V.; Rebassoo, F.; Ribnik, J.; Richman, J.; Rossin, R.; Stuart, D.; To, W.; Vlimant, J. R.; Witherell, M.] Univ Calif Santa Barbara, Santa Barbara, CA 93106 USA.
   [Bornheim, A.; Bunn, J.; Chen, Y.; Gataullin, M.; Kcira, D.; Litvine, V.; Ma, Y.; Mott, A.; Newman, H. B.; Rogan, C.; Shin, K.; Timciuc, V.; Traczyk, P.; Veverka, J.; Wilkinson, R.; Yang, Y.; Zhu, R. Y.] CALTECH, Pasadena, CA 91125 USA.
   [Akgun, B.; Calamba, A.; Carroll, R.; Ferguson, T.; Iiyama, Y.; Jang, D. W.; Jun, S. Y.; Liu, Y. F.; Paulini, M.; Russ, J.; Terentyev, N.; Vogel, H.; Vorobiev, I.] Carnegie Mellon Univ, Pittsburgh, PA 15213 USA.
   [Cumalat, J. P.; Dinardo, M. E.; Drell, B. R.; Edelmaier, C. J.; Ford, W. T.; Heyburn, B.; Lopez, E. Luiggi; Nauenberg, U.; Smith, J. G.; Stenson, K.; Ulmer, K. A.; Wagner, S. R.; Zang, S. L.] Univ Colorado, Boulder, CO 80309 USA.
   [Agostino, L.; Alexander, J.; Blekman, F.; Chatterjee, A.; Das, S.; Eggert, N.; Fields, L. J.; Gibbons, L. K.; Heltsley, B.; Henriksson, K.; Hopkins, W.; Khukhunaishvili, A.; Kreis, B.; Kuznetsov, V.; Liu, Y.; Kaufman, G. Nicolas; Patterson, J. R.; Puigh, D.; Riley, D.; Ryd, A.; Saelim, M.; Shi, X.; Sun, W.; Teo, W. D.; Thom, J.; Thompson, J.; Vaughan, J.; Weng, Y.; Winstrom, L.; Wittich, P.] Cornell Univ, Ithaca, NY 14853 USA.
   [Biselli, A.; Cirino, G.; Winn, D.] Fairfield Univ, Fairfield, CT 06824 USA.
   [Abdullin, S.; Albrow, M.; Anderson, J.; Apollinari, G.; Atac, M.; Bakken, J. A.; Banerjee, S.; Bauerdick, L. A. T.; Beretvas, A.; Berryhill, J.; Bhat, P. C.; Bloch, I.; Borcherding, F.; Burkett, K.; Butler, J. N.; Chetluru, V.; Cheung, H. W. K.; Chlebana, F.; Cihangir, S.; Demarteau, M.; Eartly, D. P.; Elvira, V. D.; Fisk, I.; Freeman, J.; Gao, Y.; Gottschalk, E.; Green, D.; Gunthoti, K.; Gutsche, O.; Hahn, A.; Hanlon, J.; Harris, R. M.; Hirschauer, J.; Hooberman, B.; James, E.; Jensen, H.; Johnson, M.; Joshi, U.; Khatiwada, R.; Kilminster, B.; Klima, B.; Kousouris, K.; Kunori, S.; Kwan, S.; Limon, P.; Lipton, R.; Lykken, J.; Maeshima, K.; Marraffino, J. M.; Mason, D.; McBride, P.; McCauley, T.; Miao, T.; Mishra, K.; Mrenna, S.; Musienko, Y.; Newman-Holmes, C.; O'Dell, V.; Popescu, S.; Pordes, R.; Prokofyev, O.; Saoulidou, N.; Sexton-Kennedy, E.; Sharma, S.; Soha, A.; Spalding, W. J.; Spiegel, L.; Tan, P.; Taylor, L.; Tkaczyk, S.; Uplegger, L.; Vaandering, E. W.; Vidal, R.; Whitmore, J.; Wu, W.; Yang, F.; Yumiceva, F.; Yun, J. C.] Fermilab Natl Accelerator Lab, Batavia, IL 60510 USA.
   [Zhukov, V.; Acosta, D.; Avery, P.; Bourilkov, D.; Chen, M.; Di Giovanni, G. P.; Dobur, D.; Drozdetskiy, A.; Field, R. D.; Fisher, M.; Fu, Y.; Furic, I. K.; Gartner, J.; Goldberg, S.; Kim, B.; Klimenko, S.; Konigsberg, J.; Korytov, A.; Kotov, K.; Kropivnitskaya, A.; Kypreos, T.; Matchev, K.; Mitselmakher, G.; Muniz, L.; Pakhotin, Y.; Petterson, M.; Prescott, C.; Remington, R.; Schmitt, M.; Scurlock, B.; Sellers, P.; Skhirtladze, N.; Snowball, M.; Wang, D.; Yelton, J.; Zakaria, M.; Askew, A.] Univ Florida, Gainesville, FL 32611 USA.
   [Ceron, C.; Gaultney, V.; Kramer, L.; Lebolo, L. M.; Linn, S.; Markowitz, P.; Martinez, G.; Mesa, D.; Rodriguez, J. L.] Florida Int Univ, Miami, FL 33199 USA.
   [Adams, T.; Askew, A.; Bochenek, J.; Chen, J.; Diamond, B.; Gleyzer, S. V.; Haas, J.; Hagopian, S.; Hagopian, V.; Jenkins, M.; Johnson, K. F.; Prosper, H.; Sekmen, S.; Veeraraghavan, V.] Florida State Univ, Tallahassee, FL 32306 USA.
   [Baarmand, M. M.; Dorney, B.; Guragain, S.; Hohlmann, M.; Kalakhety, H.; Ralich, R.; Vodopiyanov, I.] Florida Inst Technol, Melbourne, FL 32901 USA.
   [Adams, M. R.; Anghel, I. M.; Apanasevich, L.; Bai, Y.; Bazterra, V. E.; Betts, R. R.; Callner, J.; Cavanaugh, R.; Dragoiu, C.; Garcia-Solis, E. J.; Gerber, C. E.; Hofman, D. J.; Khalatyan, S.; Lacroix, F.; O'Brien, C.; Silvestre, C.; Smoron, A.; Strom, D.; Varelas, N.] Univ Illinois, Chicago, IL 60607 USA.
   [Akgun, U.; Albayrak, E. A.; Bilki, B.; Cankocak, K.; Clarida, W.; Duru, F.; Lae, C. K.; McCliment, E.; Merlo, J. -P.; Mermerkaya, H.; Mestvirishvili, A.; Moeller, A.; Nachtman, J.; Newsom, C. R.; Norbeck, E.; Olson, J.; Onel, Y.; Ozok, F.; Sen, S.; Wetzel, J.; Yetkin, T.; Yi, K.] Univ Iowa, Iowa City, IA 52242 USA.
   [Barnett, B. A.; Blumenfeld, B.; Bonato, A.; Eskew, C.; Fehling, D.; Giurgiu, G.; Gritsan, A. V.; Guo, Z. J.; Hu, G.; Maksimovic, P.; Rappoccio, S.; Swartz, M.; Tran, N. V.; Whitbeck, A.] Johns Hopkins Univ, Baltimore, MD 21218 USA.
   [Baringer, P.; Bean, A.; Benelli, G.; Grachov, O.; Murray, M.; Noonan, D.; Radicci, V.; Sanders, S.; Wood, J. S.; Zhukova, V.] Univ Kansas, Lawrence, KS 66045 USA.
   [Bandurin, D.; Bolton, T.; Chakaberia, I.; Ivanov, A.; Makouski, M.; Maravin, Y.; Shrestha, S.; Svintradze, I.; Wan, Z.] Kansas State Univ, Manhattan, KS 66506 USA.
   [Gronberg, J.; Lange, D.; Wright, D.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Baden, A.; Boutemeur, M.; Eno, S. C.; Ferencek, D.; Gomez, J. A.; Hadley, N. J.; Kellogg, R. G.; Kirn, M.; Lu, Y.; Mignerey, A. C.; Rossato, K.; Rumerio, P.; Santanastasio, F.; Skuja, A.; Temple, J.; Tonjes, M. B.; Tonwar, S. C.; Twedt, E.] Univ Maryland, College Pk, MD 20742 USA.
   [Alver, B.; Bauer, G.; Bendavid, J.; Busza, W.; Butz, E.; Cali, I. A.; Chan, M.; Dutta, V.; Everaerts, P.; Ceballos, G. Gomez; Goncharov, M.; Hahn, K. A.; Harris, P.; Kim, Y.; Klute, M.; Lee, Y. -J.; Li, W.; Loizides, C.; Lopez, J.; Luckey, P. D.; Ma, T.; Nahn, S.; Paus, C.; Roland, C.; Roland, G.; Rudolph, M.; Stephans, G. S. F.; Sumorok, K.; Sung, K.; Wenger, E. A.; Xie, S.; Yang, M.; Yilmaz, Y.; Yoon, A. S.; Zanetti, M.] MIT, Cambridge, MA 02139 USA.
   [Cole, P.; Cooper, S. I.; Cushman, P.; Dahmes, B.; De Benedetti, A.; Dudero, P. R.; Franzoni, G.; Haupt, J.; Klapoetke, K.; Kubota, Y.; Mans, J.; Rekovic, V.; Rusack, R.; Sasseville, M.; Singovsky, A.] Univ Minnesota, Minneapolis, MN 55455 USA.
   [Bloom, K.; Bose, S.; Butt, J.; Claes, D. R.; Dominguez, A.; Eads, M.; Keller, J.; Kelly, T.; Kravchenko, I.; Lazo-Flores, J.; Lundstedt, C.; Malbouisson, H.; Malik, S.; Snow, G. R.] Univ Nebraska, Lincoln, NE 68588 USA.
   [Cremaldi, L. M.; Godang, R.; Kroeger, R.; Perera, L.; Rahmat, R.; Sanders, D. A.; Summers, D.] Univ Mississippi, University, MS 38677 USA.
   [Baur, U.; Godshalk, A.; Iashvili, I.; Kharchilava, A.; Kumar, A.; Smith, K.; Zennamo, J.] SUNY Buffalo, Buffalo, NY 14260 USA.
   [Alverson, G.; Barberis, E.; Baumgartel, D.; Boeriu, O.; Chasco, M.; Kaadze, K.; Reucroft, S.; Swain, J.; Wood, D.; Zhang, J.] Northeastern Univ, Boston, MA 02115 USA.
   [Anastassov, A.; Kubik, A.; Odell, N.; Ofierzynski, R. A.; Pollack, B.; Pozdnyakov, A.; Schmitt, M.; Stoynev, S.; Velasco, M.; Won, S.] Northwestern Univ, Evanston, IL 60208 USA.
   [Antonelli, L.; Berry, D.; Hildreth, M.; Jessop, C.; Karmgard, D. J.; Kolb, J.; Kolberg, T.; Lannon, K.; Luo, W.; Lynch, S.; Marinelli, N.; Morse, D. M.; Pearson, T.; Ruchti, R.; Slaunwhite, J.; Valls, N.; Warchol, J.; Wayne, M.; Ziegler, J.] Univ Notre Dame, Notre Dame, IN 46556 USA.
   [Bylsma, B.; Durkin, L. S.; Gu, J.; Hill, C.; Killewald, P.; Ling, T. Y.; Rodenburg, M.; Williams, G.] Ohio State Univ, Columbus, OH 43210 USA.
   [Adam, N.; Berry, E.; Elmer, P.; Gerbaudo, D.; Halyo, V.; Hebda, P.; Hunt, A.; Jones, J.; Laird, E.; Pegna, D. Lopes; Marlow, D.; Medvedeva, T.; Mooney, M.; Olsen, J.; Piroue, P.; Saka, H.; Stickland, D.; Tully, C.; Werner, J. S.; Zuranski, A.] Princeton Univ, Princeton, NJ 08544 USA.
   [Acosta, J. G.; Huang, X. T.; Lopez, A.; Mendez, H.; Oliveros, S.; Vargas, J. E. Ramirez; Zatserklyaniy, A.] Univ Puerto Rico, Mayaguez, PR 00680 USA.
   [Alagoz, E.; Barnes, V. E.; Bolla, G.; Borrello, L.; Bortoletto, D.; Everett, A.; Garfinkel, A. F.; Gecse, Z.; Gutay, L.; Jones, M.; Koybasi, O.; Laasanen, A. T.; Leonardo, N.; Liu, C.; Maroussov, V.; Meier, M.; Merkel, P.; Miller, D. H.; Neumeister, N.; Potamianos, K.; Shipsey, I.; Silvers, D.; Svyatkovskiy, A.; Yoo, H. D.; Zablocki, J.; Zheng, Y.] Purdue Univ, W Lafayette, IN 47907 USA.
   [Jindal, P.; Parashar, N.] Purdue Univ Calumet, Hammond, IN 46323 USA.
   [Boulahouache, C.; Cuplov, V.; Ecklund, K. M.; Geurts, F. J. M.; Liu, J. H.; Morales, J.; Padley, B. P.; Redjimi, R.; Roberts, J.; Zabel, J.] Rice Univ, Houston, TX 77251 USA.
   [Betchart, B.; Bodek, A.; Chung, Y. S.; de Barbaro, P.; Demina, R.; Eshaq, Y.; Flacher, H.; Garcia-Bellido, A.; Goldenzweig, P.; Gotra, Y.; Han, J.; Harel, A.; Miner, D. C.; Orbaker, D.; Petrillo, G.; Vishnevskiy, D.; Zielinski, M.] Univ Rochester, Rochester, NY 14627 USA.
   [Bhatti, A.; Demortier, L.; Goulianos, K.; Lungu, G.; Mesropian, C.; Yan, M.] Rockefeller Univ, New York, NY 10021 USA.
   [Atramentov, O.; Barker, A.; Duggan, D.; Gershtein, Y.; Gray, R.; Halkiadakis, E.; Hidas, D.; Hits, D.; Lath, A.; Panwalkar, S.; Patel, R.; Richards, A.; Rose, K.; Schnetzer, S.; Somalwar, S.; Stone, R.; Thomas, S.] Rutgers State Univ, Piscataway, NJ 08854 USA.
   [Cerizza, G.; Hollingsworth, M.; Spanier, S.; Yang, Z. C.; York, A.] Univ Tennessee, Knoxville, TN 37996 USA.
   [Asaadi, J.; Eusebi, R.; Gilmore, J.; Gurrola, A.; Kamon, T.; Khotilovich, V.; Montalvo, R.; Nguyen, C. N.; Pivarski, J.; Safonov, A.; Sengupta, S.; Tatarinov, A.; Toback, D.; Weinberger, M.] Texas A&M Univ, College Stn, TX 77843 USA.
   [Akchurin, N.; Bardak, C.; Damgov, J.; Jeong, C.; Kovitanggoon, K.; Lee, S. W.; Mane, P.; Roh, Y.; Sill, A.; Volobouev, I.; Wigmans, R.; Yazgan, E.] Texas Tech Univ, Lubbock, TX 79409 USA.
   [Appelt, E.; Brownson, E.; Engh, D.; Florez, C.; Gabella, W.; Johns, W.; Kurt, P.; Maguire, C.; Melo, A.; Sheldon, P.; Velkovska, J.] Vanderbilt Univ, Nashville, TN 37235 USA.
   [Arenton, M. W.; Balazs, M.; Boutle, S.; Buehler, M.; Conetti, S.; Cox, B.; Francis, B.; Hirosky, R.; Ledovskoy, A.; Lin, C.; Neu, C.; Patel, T.; Yohay, R.] Univ Virginia, Charlottesville, VA 22901 USA.
   [Gollapinni, S.; Harr, R.; Karchin, P. E.; Mattson, M.; Milstene, C.; Sakharov, A.] Wayne State Univ, Detroit, MI 48202 USA.
   [Anderson, M.; Bachtis, M.; Bellinger, J. N.; Carlsmith, D.; Dasu, S.; Efron, J.; Gray, L.; Grogg, K. S.; Grothe, M.; Hall-Wilton, R.; Herndon, M.; Klabbers, P.; Klukas, J.; Lanaro, A.; Lazaridis, C.; Leonard, J.; Liu, J.; Lomidze, D.; Loveless, R.; Mohapatra, A.; Parker, W.; Reeder, D.; Ross, I.; Savin, A.; Smith, W. H.; Swanson, J.; Weinberg, M.] Univ Wisconsin, Madison, WI 53706 USA.
   [Gregores, E. M.] Univ Fed ABC, Santo Andre, Brazil.
   [Abdel-basit, A.] Cairo Univ, Cairo, Egypt.
   [Assran, Y.] Suez Canal Univ, Suez, Egypt.
   [Mahmoud, M. A.] Fayoum Univ, Al Fayyum, Egypt.
   [Bluj, M.] Soltan Inst Nucl Studies, PL-00681 Warsaw, Poland.
   [Agram, J. -L.; Conte, E.; Drouhin, F.; Fontaine, J. -C.; Karim, M.] Univ Haute Alsace, Mulhouse, France.
   [Bergholz, M.; Lohmann, W.; Schmidt, R.] Brandenburg Tech Univ Cottbus, Cottbus, Germany.
   [Krajczar, K.; Vesztergombi, G.] Eotvos Lorand Univ, Budapest, Hungary.
   [Maity, M.] Visva Bharati Univ, Santini Ketan, W Bengal, India.
   [Colafranceschi, S.] Univ Roma La Sapienza, Fac Ingn, Rome, Italy.
   [Fabozzi, F.] Univ Basilicata, I-85100 Potenza, Italy.
   [Adzic, P.; Krpic, D.] Univ Belgrade, Fac Phys, Belgrade 11001, Serbia.
   [Bell, A. J.] Univ Geneva, Geneva, Switzerland.
   [Assran, Y.] Adiyaman Univ, Adiyaman, Turkey.
   [Schmidt, R.] Ege Univ, Izmir, Turkey.
   [Cankocak, K.] Istanbul Tech Univ, Istanbul, Turkey.
RP Khachatryan, V (reprint author), Yerevan Phys Inst, Yerevan 375036, Armenia.
RI Tomei, Thiago/E-7091-2012; Yang, Fan/B-2755-2012; Palinkas,
   Jozsef/B-2993-2011; Krammer, Manfred/A-6508-2010; Zalewski,
   Piotr/H-7335-2013; Tinoco Mendes, Andre David/D-4314-2011; Mignerey,
   Alice/D-6623-2011; Stahl, Achim/E-8846-2011; Ruiz, Alberto/E-4473-2011;
   Padula, Sandra /G-3560-2012; Fruhwirth, Rudolf/H-2529-2012; Jeitler,
   Manfred/H-3106-2012; Azzi, Patrizia/H-5404-2012; Mundim,
   Luiz/A-1291-2012; Snigirev, Alexander/D-8912-2012; Servoli,
   Leonello/E-6766-2012; Raidal, Martti/F-4436-2012; Kodolova,
   Olga/D-7158-2012; Boos, Eduard/D-9748-2012; Ivanov, Andrew/A-7982-2013;
   Lokhtin, Igor/D-7004-2012; Novaes, Sergio/D-3532-2012; Katkov,
   Igor/E-2627-2012; Petrushanko, Sergey/D-6880-2012; Dudko,
   Lev/D-7127-2012; Brona, Grzegorz/E-5544-2012; Torassa, Ezio/I-1788-2012;
   tosi, mia/J-5777-2012; Montanari, Alessandro/J-2420-2012; Venturi,
   Andrea/J-1877-2012; Amapane, Nicola/J-3683-2012; Santaolalla,
   Javier/C-3094-2013; Rolandi, Luigi (Gigi)/E-8563-2013; Bolton,
   Tim/A-7951-2012; Wulz, Claudia-Elisabeth/H-5657-2011; Chen,
   Jie/H-6210-2011; Hektor, Andi/G-1804-2011; Kadastik, Mario/B-7559-2008;
   Giacomelli, Paolo/B-8076-2009; Hill, Christopher/B-5371-2012; Wimpenny,
   Stephen/K-8848-2013; Troitsky, Sergey/C-1377-2014; Marlow,
   Daniel/C-9132-2014; Oguri, Vitor/B-5403-2013; Janssen,
   Xavier/E-1915-2013; Alves, Gilvan/C-4007-2013; Codispoti,
   Giuseppe/F-6574-2014; Gribushin, Andrei/J-4225-2012; Cerrada,
   Marcos/J-6934-2014; Calderon, Alicia/K-3658-2014; de la Cruz,
   Begona/K-7552-2014; Scodellaro, Luca/K-9091-2014; Josa,
   Isabel/K-5184-2014; Gonzalez Suarez, Rebeca/L-6128-2014; Calvo Alamillo,
   Enrique/L-1203-2014; Vogel, Helmut/N-8882-2014; Marinho,
   Franciole/N-8101-2014; Ferguson, Thomas/O-3444-2014; Ragazzi,
   Stefano/D-2463-2009; Benussi, Luigi/O-9684-2014; Russ,
   James/P-3092-2014; Dahms, Torsten/A-8453-2015; Grandi,
   Claudio/B-5654-2015; Ahmed, Ijaz/E-9144-2015; Lazzizzera,
   Ignazio/E-9678-2015; Sen, Sercan/C-6473-2014; D'Alessandro,
   Raffaello/F-5897-2015; Belyaev, Alexander/F-6637-2015; Trocsanyi,
   Zoltan/A-5598-2009; Konecki, Marcin/G-4164-2015; Hernandez Calama, Jose
   Maria/H-9127-2015; Bedoya, Cristina/K-8066-2014; Matorras,
   Francisco/I-4983-2015; My, Salvatore/I-5160-2015; Muelmenstaedt,
   Johannes/K-2432-2015; Rovelli, Tiziano/K-4432-2015; Dremin,
   Igor/K-8053-2015; Hoorani, Hafeez/D-1791-2013; Andreev,
   Vladimir/M-8665-2015; Cakir, Altan/P-1024-2015; TUVE',
   Cristina/P-3933-2015; Gulmez, Erhan/P-9518-2015; KIM, Tae
   Jeong/P-7848-2015; Arce, Pedro/L-1268-2014; Flix, Josep/G-5414-2012;
   Ozdemir, Kadri/P-8058-2014; Della Ricca, Giuseppe/B-6826-2013; Azarkin,
   Maxim/N-2578-2015; Paganoni, Marco/A-4235-2016; Kirakosyan,
   Martin/N-2701-2015; Verwilligen, Piet/M-2968-2014; Vilela Pereira,
   Antonio/L-4142-2016; Sznajder, Andre/L-1621-2016; Haj Ahmad,
   Wael/E-6738-2016; Xie, Si/O-6830-2016; Leonardo, Nuno/M-6940-2016; Goh,
   Junghwan/Q-3720-2016; Govoni, Pietro/K-9619-2016; Tuominen,
   Eija/A-5288-2017; Yazgan, Efe/C-4521-2014; Paulini, Manfred/N-7794-2014;
   Gerbaudo, Davide/J-4536-2012; Sguazzoni, Giacomo/J-4620-2015; Ligabue,
   Franco/F-3432-2014; Fassi, Farida/F-3571-2016; Varela, Joao/K-4829-2016;
   Menasce, Dario Livio/A-2168-2016; 
OI Tomei, Thiago/0000-0002-1809-5226; Krammer, Manfred/0000-0003-2257-7751;
   Tinoco Mendes, Andre David/0000-0001-5854-7699; Stahl,
   Achim/0000-0002-8369-7506; Ruiz, Alberto/0000-0002-3639-0368; Azzi,
   Patrizia/0000-0002-3129-828X; Mundim, Luiz/0000-0001-9964-7805; Servoli,
   Leonello/0000-0003-1725-9185; Ivanov, Andrew/0000-0002-9270-5643;
   Novaes, Sergio/0000-0003-0471-8549; Katkov, Igor/0000-0003-3064-0466;
   Dudko, Lev/0000-0002-4462-3192; Montanari,
   Alessandro/0000-0003-2748-6373; Amapane, Nicola/0000-0001-9449-2509;
   Rolandi, Luigi (Gigi)/0000-0002-0635-274X; Wulz,
   Claudia-Elisabeth/0000-0001-9226-5812; Hektor, Andi/0000-0001-7873-8118;
   Hill, Christopher/0000-0003-0059-0779; Wimpenny,
   Stephen/0000-0003-0505-4908; Troitsky, Sergey/0000-0001-6917-6600;
   Codispoti, Giuseppe/0000-0003-0217-7021; Cerrada,
   Marcos/0000-0003-0112-1691; Scodellaro, Luca/0000-0002-4974-8330;
   Gonzalez Suarez, Rebeca/0000-0002-6126-7230; Calvo Alamillo,
   Enrique/0000-0002-1100-2963; Vogel, Helmut/0000-0002-6109-3023; Marinho,
   Franciole/0000-0002-7327-0349; Ferguson, Thomas/0000-0001-5822-3731;
   Ragazzi, Stefano/0000-0001-8219-2074; Benussi,
   Luigi/0000-0002-2363-8889; Russ, James/0000-0001-9856-9155; Dahms,
   Torsten/0000-0003-4274-5476; Grandi, Claudio/0000-0001-5998-3070;
   Lazzizzera, Ignazio/0000-0001-5092-7531; Sen,
   Sercan/0000-0001-7325-1087; D'Alessandro, Raffaello/0000-0001-7997-0306;
   Belyaev, Alexander/0000-0002-1733-4408; Trocsanyi,
   Zoltan/0000-0002-2129-1279; Konecki, Marcin/0000-0001-9482-4841;
   Hernandez Calama, Jose Maria/0000-0001-6436-7547; Bedoya,
   Cristina/0000-0001-8057-9152; Matorras, Francisco/0000-0003-4295-5668;
   My, Salvatore/0000-0002-9938-2680; Muelmenstaedt,
   Johannes/0000-0003-1105-6678; Rovelli, Tiziano/0000-0002-9746-4842;
   TUVE', Cristina/0000-0003-0739-3153; Gulmez, Erhan/0000-0002-6353-518X;
   KIM, Tae Jeong/0000-0001-8336-2434; Arce, Pedro/0000-0003-3009-0484;
   Flix, Josep/0000-0003-2688-8047; Ozdemir, Kadri/0000-0002-0103-1488;
   Della Ricca, Giuseppe/0000-0003-2831-6982; Paganoni,
   Marco/0000-0003-2461-275X; Vilela Pereira, Antonio/0000-0003-3177-4626;
   Sznajder, Andre/0000-0001-6998-1108; Haj Ahmad,
   Wael/0000-0003-1491-0446; Xie, Si/0000-0003-2509-5731; Leonardo,
   Nuno/0000-0002-9746-4594; Goh, Junghwan/0000-0002-1129-2083; Govoni,
   Pietro/0000-0002-0227-1301; Tuominen, Eija/0000-0002-7073-7767; Yazgan,
   Efe/0000-0001-5732-7950; Paulini, Manfred/0000-0002-6714-5787; Gerbaudo,
   Davide/0000-0002-4463-0878; Vieira de Castro Ferreira da Silva, Pedro
   Manuel/0000-0002-5725-041X; Bean, Alice/0000-0001-5967-8674; Longo,
   Egidio/0000-0001-6238-6787; Di Matteo, Leonardo/0000-0001-6698-1735;
   Baarmand, Marc/0000-0002-9792-8619; Boccali,
   Tommaso/0000-0002-9930-9299; Attia Mahmoud,
   Mohammed/0000-0001-8692-5458; Carrera, Edgar/0000-0002-0857-8507;
   Sguazzoni, Giacomo/0000-0002-0791-3350; Ligabue,
   Franco/0000-0002-1549-7107; Diemoz, Marcella/0000-0002-3810-8530;
   Tricomi, Alessia Rita/0000-0002-5071-5501; Fassi,
   Farida/0000-0002-6423-7213; Ghezzi, Alessio/0000-0002-8184-7953; bianco,
   stefano/0000-0002-8300-4124; Demaria, Natale/0000-0003-0743-9465;
   Benaglia, Andrea Davide/0000-0003-1124-8450; Covarelli,
   Roberto/0000-0003-1216-5235; Ciulli, Vitaliano/0000-0003-1947-3396;
   Martelli, Arabella/0000-0003-3530-2255; Levchenko,
   Petr/0000-0003-4913-0538; Varela, Joao/0000-0003-2613-3146; Heath,
   Helen/0000-0001-6576-9740; Lloret Iglesias, Lara/0000-0002-0157-4765;
   Menasce, Dario Livio/0000-0002-9918-1686; Bilki,
   Burak/0000-0001-9515-3306
FU FMSR (Austria); FNRS and FWO (Belgium); CNPq (Brazil); CAPES (Brazil);
   FAPERJ (Brazil); FAPESP (Brazil); MES (Bulgaria); CERN; CAS (China);
   MoST (China); NSFC (China); COLCIENCIAS (Colombia); MSES (Croatia); RPF
   (Cyprus); Academy of Sciences and NICPB (Estonia); Academy of Finland,
   ME, and HIP (Finland); CEA (France); CNRS/IN2P3 (France); BMBF
   (Germany); DFG (Germany); HGF (Germany); GSRT (Greece); OTKA (Hungary);
   NKTH (Hungary); DAE (India); DST (India); IPM (Iran); SFI (Ireland);
   INFN (Italy); NRF (Korea); WCU (Korea); LAS (Lithuania); CINVESTAV
   (Mexico); CONACYT (Mexico); SEP (Mexico); UASLP-FAI (Mexico); PAEC
   (Pakistan); SCSR (Poland); FCT (Portugal); JINR (Armenia, Belarus,
   Georgia, Ukraine, Uzbekistan); MST (Russia); MAE (Russia); MSTD
   (Serbia); MICINN (Spain); CPAN (Spain); Swiss Funding Agencies
   (Switzerland); NSC (Taipei); TUBITAK (Turkey); TAEK (Turkey); STFC
   (United Kingdom); DOE (USA); NSF (USA)
FX We wish to congratulate our colleagues in the CERN accelerator
   departments for the excellent performance of the LHC machine. We thank
   the technical and administrative staff at CERN and other CMS institutes,
   and acknowledge support from: FMSR (Austria); FNRS and FWO (Belgium);
   CNPq, CAPES, FAPERJ, and FAPESP (Brazil); MES (Bulgaria); CERN; CAS,
   MoST, and NSFC (China); COLCIENCIAS (Colombia); MSES (Croatia); RPF
   (Cyprus); Academy of Sciences and NICPB (Estonia); Academy of Finland,
   ME, and HIP (Finland); CEA and CNRS/IN2P3 (France); BMBF, DFG, and HGF
   (Germany); GSRT (Greece); OTKA and NKTH (Hungary); DAE and DST (India);
   IPM (Iran); SFI (Ireland); INFN (Italy); NRF and WCU (Korea); LAS
   (Lithuania); CINVESTAV, CONACYT, SEP, and UASLP-FAI (Mexico); PAEC
   (Pakistan); SCSR (Poland); FCT (Portugal); JINR (Armenia, Belarus,
   Georgia, Ukraine, Uzbekistan); MST and MAE (Russia); MSTD (Serbia);
   MICINN and CPAN (Spain); Swiss Funding Agencies (Switzerland); NSC
   (Taipei); TUBITAK and TAEK (Turkey); STFC (United Kingdom); DOE and NSF
   (USA).
NR 33
TC 36
Z9 36
U1 2
U2 55
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 20
PY 2010
VL 105
IS 26
AR 262001
DI 10.1103/PhysRevLett.105.262001
PG 15
WC Physics, Multidisciplinary
SC Physics
GA 713RI
UT WOS:000286754700004
PM 21231646
ER

PT J
AU Ni, T
   Tu, K
   Wang, Z
   Song, S
   Wu, H
   Xie, B
   Scott, KC
   Grewal, SI
   Gao, YA
   Zhu, J
AF Ni, Ting
   Tu, Kang
   Wang, Zhong
   Song, Shen
   Wu, Han
   Xie, Bin
   Scott, Kristin C.
   Grewal, Shiv I.
   Gao, Yuan
   Zhu, Jun
TI The Prevalence and Regulation of Antisense Transcripts in
   Schizosaccharomyces pombe
SO PLOS ONE
LA English
DT Article
ID BIDIRECTIONAL PROMOTERS; PERVASIVE TRANSCRIPTION; NUCLEOTIDE RESOLUTION;
   ACTIVE PROMOTERS; HISTONE H2A.Z; YEAST GENOME; RNA-SEQ; GENES; MAPS;
   IDENTIFICATION
AB A strand-specific transcriptome sequencing strategy, directional ligation sequencing or DeLi-seq, was employed to profile antisense transcriptome of Schizosaccharomyces pombe. Under both normal and heat shock conditions, we found that polyadenylated antisense transcripts are broadly expressed while distinct expression patterns were observed for protein-coding and non-coding loci. Dominant antisense expression is enriched in protein-coding genes involved in meiosis or stress response pathways. Detailed analyses further suggest that antisense transcripts are independently regulated with respect to their sense transcripts, and diverse mechanisms might be potentially involved in the biogenesis and degradation of antisense RNAs. Taken together, antisense transcription may have profound impacts on global gene regulation in S. pombe.
C1 [Ni, Ting; Tu, Kang; Song, Shen; Wu, Han; Scott, Kristin C.; Zhu, Jun] Duke Univ, Med Ctr, Inst Genome Sci & Policy, Durham, NC 27710 USA.
   [Ni, Ting; Tu, Kang; Wu, Han; Zhu, Jun] NHLBI, Genet & Dev Biol Ctr, NIH, Bethesda, MD 20892 USA.
   [Wang, Zhong] DOE Joint Genome Inst, Walnut Creek, CA USA.
   [Xie, Bin; Gao, Yuan] Johns Hopkins Univ, Div Genom Epigenom & Bioinformat, Lieber Inst Brain Dev, Baltimore, MD USA.
   [Gao, Yuan] Johns Hopkins Univ, Neuroregenerat & Stem Cell Biol Program, Inst Cell Engn, Baltimore, MD USA.
   [Grewal, Shiv I.] NCI, Biochem & Mol Biol Lab, NIH, Bethesda, MD 20892 USA.
RP Ni, T (reprint author), Duke Univ, Med Ctr, Inst Genome Sci & Policy, Durham, NC 27710 USA.
EM jun.zhu@nih.gov
RI Wang, Zhong/E-7897-2011; Gao, Yuan/E-1706-2011; Wu, Han/E-3455-2013
OI Wu, Han/0000-0002-3972-698X
FU Department of Defense [BC074085P1]; Susan G. Komen for the Cure
   [KG081324]
FX This work was supported by Department of Defense (BC074085P1) and Susan
   G. Komen for the Cure (KG081324) to J.Z. The funders had no role in
   study design, data collection and analysis, decision to publish, or
   preparation of the manuscript.
NR 50
TC 33
Z9 34
U1 0
U2 10
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 185 BERRY ST, STE 1300, SAN FRANCISCO, CA 94107 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 20
PY 2010
VL 5
IS 12
AR e15271
DI 10.1371/journal.pone.0015271
PG 10
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 698EM
UT WOS:000285575200029
PM 21187966
ER

PT J
AU Meyer, K
   Platnick, S
AF Meyer, Kerry
   Platnick, Steven
TI Utilizing the MODIS 1.38 mu m channel for cirrus cloud optical thickness
   retrievals: Algorithm and retrieval uncertainties
SO JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES
LA English
DT Article
ID TROPICAL THIN CIRRUS; BULK SCATTERING PROPERTIES; ICE CRYSTALS; PART II;
   MODELS; WATER; BAND; REFLECTANCE; TERRA
AB The cloud products from the Moderate Resolution Imaging Spectroradiometers (MODIS) on Terra and Aqua have been widely used within the atmospheric research community. The retrieval algorithms, however, oftentimes have difficulty detecting and retrieving thin cirrus, due to sensitivities to surface reflectance. Conversely, the 1.38 mu m channel, located within a strong water vapor absorption band, is quite useful for detecting thin cirrus clouds since the signal from the surface can be blocked or substantially attenuated by the absorption of atmospheric water vapor below cirrus. This channel, however, suffers from nonnegligible attenuation due to the water vapor located above and within the cloud layer. Here we provide details of a new technique pairing the 1.38 mu m and 1.24 mu m channels to estimate the above/in-cloud water vapor attenuation and to subsequently retrieve thin cirrus optical thickness (tau) from attenuation-corrected 1.38 mu m reflectance measurements. In selected oceanic cases, this approach is found to increase cirrus retrievals by up to 38% over MOD06. For these cases, baseline 1.38 mu m retrieval uncertainties are estimated to be between 15 and 20% for moderately thick cirrus (tau > 1), with the largest error source being the unknown cloud effective particle radius, which is not retrieved with the described technique. Uncertainties increase to around 90% for the thinnest clouds (tau < 0.5) where instrument and surface uncertainties dominate.
C1 [Meyer, Kerry; Platnick, Steven] NASA, Goddard Space Flight Ctr, Greenbelt, MD 20771 USA.
   [Meyer, Kerry] Oak Ridge Associated Univ, Oak Ridge, TN USA.
   [Meyer, Kerry] Univ Maryland Baltimore Cty, Goddard Earth Sci & Technol Ctr, Baltimore, MD 21228 USA.
RP Meyer, K (reprint author), NASA, Goddard Space Flight Ctr, Code 613-2, Greenbelt, MD 20771 USA.
EM kerry.meyer@nasa.gov
RI Platnick, Steven/J-9982-2014; Meyer, Kerry/E-8095-2016
OI Platnick, Steven/0000-0003-3964-3567; Meyer, Kerry/0000-0001-5361-9200
FU NASA
FX This research was supported by an appointment to the NASA Postdoctoral
   Program, administered by Oak Ridge Associated Universities through a
   contract with NASA, at the Goddard Space Flight Center, and by MODIS
   science team funding from NASA. In addition, the authors wish to thank
   Zhibo Zhang for his generous assistance and many helpful suggestions
   during the course of this work and Tom Arnold for his development of and
   assistance with the MODIS imaging software.
NR 41
TC 11
Z9 11
U1 2
U2 7
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-897X
J9 J GEOPHYS RES-ATMOS
JI J. Geophys. Res.-Atmos.
PD DEC 18
PY 2010
VL 115
AR D24209
DI 10.1029/2010JD014872
PG 13
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA 696TC
UT WOS:000285463300008
ER

PT J
AU Krepelova, A
   Huthwelker, T
   Bluhm, H
   Ammann, M
AF Krepelova, Adela
   Huthwelker, Thomas
   Bluhm, Hendrik
   Ammann, Markus
TI Surface Chemical Properties of Eutectic and Frozen NaCl Solutions Probed
   by XPS and NEXAFS
SO CHEMPHYSCHEM
LA English
DT Article
DE halogens; near-edge X-ray absorption fine structure; surface chemistry;
   water chemistry; X-ray photoelectron spectroscopy
ID HYDROGEN-BOND NETWORK; LIQUID WATER; PHOTOELECTRON-SPECTROSCOPY;
   BOUNDARY-LAYER; ICE SURFACES; INTERFACE; CHEMISTRY; CHLORIDE; SEA;
   NITRATE
AB We study the surface of sodium chloride-water mixtures above, at, and below the eutectic temperature using X-ray photoelectron spectroscopy (XPS) and electron-yield near-edge X-ray absorption fine structure (NEXAFS) spectroscopy. The NaCl frozen solutions are mimicking sea-salt deposits in ice or snow. Sea-salt particles emitted from the oceans are a major contributor to the global aerosol burden and can act as a catalyst for heterogeneous chemistry or as cloud condensation nuclei. The nature of halogen ions at ice surfaces and their influence on surface melting of ice are of significant current interest. We found that the surface of the frozen solution, depending on the temperature, consists of ice and different NaCl phases, that is, NaCl, NaCl center dot 2H(2)O, and surface-adsorbed water.
C1 [Krepelova, Adela; Ammann, Markus] Paul Scherrer Inst, Lab Radio & Environm Chem, CH-5232 Villigen, Switzerland.
   [Huthwelker, Thomas] Paul Scherrer Inst, Swiss Light Source, CH-5232 Villigen, Switzerland.
   [Bluhm, Hendrik] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Chem Sci, Berkeley, CA 94720 USA.
RP Ammann, M (reprint author), Paul Scherrer Inst, Lab Radio & Environm Chem, CH-5232 Villigen, Switzerland.
EM markus.ammann@psi.ch
RI Ammann, Markus/E-4576-2011
OI Ammann, Markus/0000-0001-5922-9000
FU EU; PSI research commission; Office of Science, Office of Basic Energy
   Sciences, Division of Chemical Sciences, Geosciences and Biosciences and
   Materials Sciences Division of the US Department of Energy at the
   Lawrence Berkeley National Laboratory [DE-AC02-05CH11231]
FX We appreciate the support by the EU FP6 project SCOUT-O3. The PSI
   research commission is acknowledged for its financial support. The ALS
   and the MES beamline 11.0.2 are supported by the Director, Office of
   Science, Office of Basic Energy Sciences, Division of Chemical Sciences,
   Geosciences and Biosciences and Materials Sciences Division of the US
   Department of Energy at the Lawrence Berkeley National Laboratory under
   Contract No. DE-AC02-05CH11231. The absorption measurements on aerosols
   were performed on the PolLux beamline at the Swiss Light Source, Paul
   Scherrer Institut, Villigen, Switzerland. We appreciate the support of
   Drs. J. Raabe and B. Watts during the experiments at the SLS.
NR 36
TC 17
Z9 17
U1 4
U2 33
PU WILEY-V C H VERLAG GMBH
PI WEINHEIM
PA PO BOX 10 11 61, D-69451 WEINHEIM, GERMANY
SN 1439-4235
J9 CHEMPHYSCHEM
JI ChemPhysChem
PD DEC 17
PY 2010
VL 11
IS 18
SI SI
BP 3859
EP 3866
DI 10.1002/cphc.201000461
PG 8
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 693XG
UT WOS:000285258100006
PM 20954232
ER

PT J
AU Downing, KH
AF Downing, Kenneth H.
TI Commentary on "Structure of a Conserved Retroviral RNA Packaging Element
   by NMR Spectroscopy and Cryo-Electron Tomography" by Y. Miyazaki et al.
SO JOURNAL OF MOLECULAR BIOLOGY
LA English
DT Editorial Material
C1 Univ Calif Berkeley, Lawrence Berkeley Lab, Div Life Sci, Berkeley, CA 93720 USA.
RP Downing, KH (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Life Sci, Berkeley, CA 93720 USA.
NR 1
TC 0
Z9 0
U1 0
U2 1
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0022-2836
J9 J MOL BIOL
JI J. Mol. Biol.
PD DEC 17
PY 2010
VL 404
IS 5
BP 749
EP 750
DI 10.1016/j.jmb.2010.10.021
PG 2
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 699IT
UT WOS:000285657800001
PM 20965201
ER

PT J
AU Li, DF
   Wang, ZG
   Gao, F
AF Li, Dengfeng
   Wang, Zhiguo
   Gao, Fei
TI First-principles study of the electronic properties of wurtzite,
   zinc-blende, and twinned InP nanowires
SO NANOTECHNOLOGY
LA English
DT Article
ID INDIUM-PHOSPHIDE NANOWIRES; TOTAL-ENERGY CALCULATIONS; LIQUID-SOLID
   GROWTH; VAPOR-PHASE EPITAXY; III-V NANOWIRES; DEPENDENT
   PHOTOLUMINESCENCE; OPTICAL-PROPERTIES; SUPERLATTICES; NANOSTRUCTURES;
   SEMICONDUCTORS
AB The electronic properties of zinc-blende, wurtzite, and rotationally twinned InP nanowires were studied using first-principles calculations. The results show that all the simulated nanowires exhibit a semiconducting character, and the band gap decreases with increasing the nanowire size. The band gap difference between the zinc-blende, wurtzite, and twinned InP nanowires and bulk InP can be described by Delta E-g(wire) = 0.88/D-1.23, Delta E-g(wire) = 0.79/D-1.22 and Delta E-g(twin) = 1.3/D-1.19, respectively, where D is the diameter of the nanowires. The valence band maximum (VBM) and conduction band minimum (CBM) originate mainly from the p-orbitals of the P atoms and s-orbitals of the In atoms at the core regions of the nanowires, respectively. The hexagonal (2H) stacking inside the cubic (3C) stacking has no effect on the electronic properties of thin InP nanowires.
C1 [Gao, Fei] Pacific NW Natl Lab, Richland, WA 99352 USA.
   [Li, Dengfeng] Chongqing Univ Posts & Telecommun, Dept Math & Phys, Chongqing 400065, Peoples R China.
   [Li, Dengfeng; Wang, Zhiguo] Univ Elect Sci & Technol China, Dept Appl Phys, Chengdu 610054, Peoples R China.
RP Gao, F (reprint author), Pacific NW Natl Lab, POB 999, Richland, WA 99352 USA.
EM zgwang@uestc.edu.cn; fei.gao@pml.gov
RI Gao, Fei/H-3045-2012; Wang, Zhiguo/B-7132-2009
FU National Natural Science Foundation of China [10947102]; Foundation of
   Education Committees of Chongqing [KJ090503]; Young Scientist Foundation
   of Sichuan [09ZQ026-029]; Division of Materials Sciences and
   Engineering, Office of Basic Energy Sciences, US Department of Energy
   [DE-AC05-76RL01830]
FX This work was supported by the Special Funds of the National Natural
   Science Foundation of China (Grant No. 10947102) and the Foundation of
   Education Committees of Chongqing (No. KJ090503). Z Wang was financially
   supported by the Young Scientist Foundation of Sichuan (09ZQ026-029). F
   Gao was supported by the Division of Materials Sciences and Engineering,
   Office of Basic Energy Sciences, US Department of Energy under Contract
   DE-AC05-76RL01830.
NR 56
TC 14
Z9 14
U1 3
U2 16
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 0957-4484
J9 NANOTECHNOLOGY
JI Nanotechnology
PD DEC 17
PY 2010
VL 21
IS 50
AR 505709
DI 10.1088/0957-4484/21/50/505709
PG 7
WC Nanoscience & Nanotechnology; Materials Science, Multidisciplinary;
   Physics, Applied
SC Science & Technology - Other Topics; Materials Science; Physics
GA 685JH
UT WOS:000284624500025
PM 21098947
ER

PT J
AU Tomas, R
   Bruning, O
   Giovannozzi, M
   Hagen, P
   Lamont, M
   Schmidt, F
   Vanbavinckhove, G
   Aiba, M
   Calaga, R
   Miyamoto, R
AF Tomas, R.
   Bruening, O.
   Giovannozzi, M.
   Hagen, P.
   Lamont, M.
   Schmidt, F.
   Vanbavinckhove, G.
   Aiba, M.
   Calaga, R.
   Miyamoto, R.
TI CERN Large Hadron Collider optics model, measurements, and corrections
SO PHYSICAL REVIEW SPECIAL TOPICS-ACCELERATORS AND BEAMS
LA English
DT Article
AB Optics stability during all phases of operation is crucial for the LHC. Tools and procedures have been developed for rapid checks of beta beating, dispersion, and linear coupling, as well as for prompt optics corrections. Important optics errors during the different phases of the beam commissioning were observed and locally corrected using the segment-by-segment technique. The most relevant corrections at injection have been corroborated with dedicated magnetic measurements.
C1 [Tomas, R.; Bruening, O.; Giovannozzi, M.; Hagen, P.; Lamont, M.; Schmidt, F.; Vanbavinckhove, G.] CERN, CH-1211 Geneva 23, Switzerland.
   [Aiba, M.] Paul Scherrer Inst, CH-5232 Villigen, Switzerland.
   [Calaga, R.; Miyamoto, R.] BNL, Upton, NY 11973 USA.
RP Tomas, R (reprint author), CERN, CH-1211 Geneva 23, Switzerland.
EM rogelio.tomas@cern.ch
FU U.S. LARP
FX We greatly thank C. Alabau, R. Alemany, G. Arduini, R. Assmann, M.
   Buzio, J. Cardona, R. Chritin, J. Garcia Perez, O. Dominguez, S.
   Fartoukh, A. Franchi, V. Kain, A. Macpherson, R. de Maria, E. McIntosh,
   M. Meddahi, D. Missiaen, G. Mueller, L. Ponce, S. Redaelli, J. Serrano,
   R. Steinhagen, M. Strzelczyk, E. Todesco, J. Uythoven, W. Venturini, J.
   Wenninger, S. Whitem and F. Zimmermann for their invaluable help. This
   work is partially supported by the U.S. LARP.
NR 37
TC 12
Z9 12
U1 0
U2 0
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-4402
J9 PHYS REV SPEC TOP-AC
JI Phys. Rev. Spec. Top.-Accel. Beams
PD DEC 17
PY 2010
VL 13
IS 12
AR 121004
DI 10.1103/PhysRevSTAB.13.121004
PG 8
WC Physics, Nuclear; Physics, Particles & Fields
SC Physics
GA 695XP
UT WOS:000285406200001
ER

PT J
AU Soukoulis, CM
   Wegener, M
AF Soukoulis, Costas M.
   Wegener, Martin
TI Optical Metamaterials-More Bulky and Less Lossy
SO SCIENCE
LA English
DT Editorial Material
ID NEGATIVE REFRACTIVE-INDEX; PHOTONIC METAMATERIAL
C1 [Soukoulis, Costas M.] Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
   [Soukoulis, Costas M.] Iowa State Univ, Dept Phys & Astron, Ames, IA 50011 USA.
   [Soukoulis, Costas M.] Univ Crete, Fdn Res & Technol Hellas, Inst Elect Struct & Laser, Iraklion, Crete, Greece.
   [Wegener, Martin] Karlsruhe Inst Technol, Inst Nanotechnol, Inst Appl Phys, Karlsruhe, Germany.
   [Wegener, Martin] Karlsruhe Inst Technol, Ctr Funct Nanostruct, Karlsruhe, Germany.
RP Soukoulis, CM (reprint author), Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
EM soukoulis@ameslab.gov
RI Soukoulis, Costas/A-5295-2008; Wegener, Martin/S-5456-2016
NR 14
TC 110
Z9 112
U1 6
U2 62
PU AMER ASSOC ADVANCEMENT SCIENCE
PI WASHINGTON
PA 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA
SN 0036-8075
J9 SCIENCE
JI Science
PD DEC 17
PY 2010
VL 330
IS 6011
BP 1633
EP 1634
DI 10.1126/science.1198858
PG 2
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 695RO
UT WOS:000285390500051
PM 21164003
ER

PT J
AU Bozin, ES
   Malliakas, CD
   Souvatzis, P
   Proffen, T
   Spaldin, NA
   Kanatzidis, MG
   Billinge, SJL
AF Bozin, Emil S.
   Malliakas, Christos D.
   Souvatzis, Petros
   Proffen, Thomas
   Spaldin, Nicola A.
   Kanatzidis, Mercouri G.
   Billinge, Simon J. L.
TI Entropically Stabilized Local Dipole Formation in Lead Chalcogenides
SO SCIENCE
LA English
DT Article
ID PBTE
AB We report the observation of local structural dipoles that emerge from an undistorted ground state on warming, in contrast to conventional structural phase transitions in which distortions emerge on cooling. Using experimental and theoretical probes of the local structure, we demonstrate this behavior in binary lead chalcogenides, which were believed to adopt the ideal, undistorted rock-salt structure at all temperatures. The behavior is consistent with a simple thermodynamic model in which the emerging dipoles are stabilized in the disordered state at high temperature due to the extra configurational entropy despite the fact that the undistorted structure has lower internal energy. Our findings shed light on the anomalous electronic and thermoelectric properties of the lead chalcogenides. Similar searches may show that the phenomenon is more widespread.
C1 [Bozin, Emil S.; Billinge, Simon J. L.] Brookhaven Natl Lab, Condensed Matter Phys & Mat Sci Dept, Upton, NY 11973 USA.
   [Malliakas, Christos D.; Kanatzidis, Mercouri G.] Northwestern Univ, Dept Chem, Evanston, IL 60208 USA.
   [Souvatzis, Petros] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
   [Proffen, Thomas] Los Alamos Natl Lab, Lujan Neutron Scattering Ctr, Los Alamos, NM 87545 USA.
   [Spaldin, Nicola A.] ETH, Dept Mat, Zurich, Switzerland.
   [Kanatzidis, Mercouri G.] Argonne Natl Lab, Div Mat Sci, Argonne, IL 60439 USA.
   [Billinge, Simon J. L.] Columbia Univ, Dept Appl Phys & Appl Math, New York, NY 10027 USA.
RP Billinge, SJL (reprint author), Brookhaven Natl Lab, Condensed Matter Phys & Mat Sci Dept, Upton, NY 11973 USA.
EM sb2896@columbia.edu
RI Bozin, Emil/E-4679-2011; Spaldin, Nicola/A-1017-2010; Lujan Center,
   LANL/G-4896-2012; Proffen, Thomas/B-3585-2009
OI Spaldin, Nicola/0000-0003-0709-9499; Proffen, Thomas/0000-0002-1408-6031
FU U.S. Department of Energy, Office of Basic Energy Sciences (DOE-BES)
   [DE-AC02-98CH10886]; Office of Naval Research; NSF [DMR-0940420]
FX S.J.B. and E. B. thank J. Richardson for his early support and
   enthusiasm for the project and dedicate the paper to him. We acknowledge
   useful discussions with A. Millis, P. Allen, R. Cohen, C. Farrow, and J.
   Hill. Work in the Billinge group was supported by the U.S. Department of
   Energy, Office of Basic Energy Sciences (DOE-BES), under contract
   DE-AC02-98CH10886. Work in the Kanatzidis group was supported by the
   Office of Naval Research. Work in the Spaldin group was supported by the
   NSF under award DMR-0940420. The neutron diffraction measurements were
   carried out at the Lujan Center at Los Alamos National Laboratory, and
   the x-ray experiments were carried out at the Advanced Photon Source,
   Argonne National Laboratory, both of which are supported by DOE-BES, and
   the calculations were performed at the San Diego Supercomputer Center,
   which is supported by NSF.
NR 19
TC 115
Z9 115
U1 7
U2 115
PU AMER ASSOC ADVANCEMENT SCIENCE
PI WASHINGTON
PA 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA
SN 0036-8075
J9 SCIENCE
JI Science
PD DEC 17
PY 2010
VL 330
IS 6011
BP 1660
EP 1663
DI 10.1126/science.1192759
PG 4
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 695RO
UT WOS:000285390500062
PM 21164012
ER

PT J
AU Liu, DJ
   Nimlos, MR
   Johnson, DK
   Himmel, ME
   Qian, XH
AF Liu, Dajiang
   Nimlos, Mark R.
   Johnson, David K.
   Himmel, Michael E.
   Qian, Xianghong
TI Free Energy Landscape for Glucose Condensation Reactions
SO JOURNAL OF PHYSICAL CHEMISTRY A
LA English
DT Article
ID MOLECULAR-DYNAMICS SIMULATIONS; DILUTE-ACID PRETREATMENT; LIQUID-WATER;
   D-XYLOSE; BIOMASS PRETREATMENT; AQUEOUS-SOLUTION; HIGH-TEMPERATURE;
   SULFURIC-ACID; CORN STOVER; MECHANISM
AB Ab initio molecular dynamics and metadynamics simulations were used to determine the free energy surfaces (FES) for the acid catalyzed beta-D-glucose condensation reaction. Protonation of C1-OH on the beta-D-glucose, breakage of the C1-O1 bond, and the formation of C1 carbocation is the rate-limiting step. The effects of solvent on the reaction were investigated by determining the FES both in the absence and presence of solvent water. It was found that water played a critical role in these reactions. The reaction barrier for the proton-catalyzed glucose condensation reaction is solvent induced because of proton's high affinity for water. During these simulations, beta-D-glucose conversion to alpha-D-glucose process via the Cl carbocation was also observed. The associated free energy change and activation barrier for this reaction were determined.
C1 [Liu, Dajiang; Qian, Xianghong] Colorado State Univ, Dept Mech Engn, Ft Collins, CO 80523 USA.
   [Nimlos, Mark R.] Natl Renewable Energy Lab, Natl Bioenergy Ctr, Golden, CO 80401 USA.
   [Johnson, David K.; Himmel, Michael E.] Natl Renewable Energy Lab, Biosci Ctr, Golden, CO 80401 USA.
RP Qian, XH (reprint author), Colorado State Univ, Dept Mech Engn, Ft Collins, CO 80523 USA.
EM xhqian@engr.colostate.edu
RI Johnson, David/G-4959-2011; Qian, Xianghong/C-4821-2014; Liu,
   Dajiang/I-4434-2016
OI Johnson, David/0000-0003-4815-8782; 
FU NSF [CBET 0844882]; Department of Energy Office of the Biomass; National
   Renewable Energy Laboratory [ZCO-7-77386-01]
FX This work is partly supported by the NSF CAREER (CBET 0844882) and
   partly by the Department of Energy Office of the Biomass Program via a
   subcontract from the National Renewable Energy Laboratory
   (ZCO-7-77386-01). Calculations were carried out on Teragrid and the
   Golden Energy Computing Facilities on RA.
NR 47
TC 27
Z9 27
U1 0
U2 19
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1089-5639
J9 J PHYS CHEM A
JI J. Phys. Chem. A
PD DEC 16
PY 2010
VL 114
IS 49
BP 12936
EP 12944
DI 10.1021/jp1078407
PG 9
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 690GN
UT WOS:000284990600021
PM 21086968
ER

PT J
AU Decker, SR
   Goldberg, RN
   Lang, BE
   Michener, W
AF Decker, Stephen R.
   Goldberg, Robert N.
   Lang, Brian E.
   Michener, William
TI Thermodynamics of the Hydrolysis Reactions of 1-Naphthyl Acetate,
   4-Nitrophenyl Acetate, and 4-Nitrophenyl alpha-L-arabinofuranoside
SO JOURNAL OF PHYSICAL CHEMISTRY B
LA English
DT Article
ID SUBSTITUTED PHENOLS; COMBUSTION; IONIZATION; ENTHALPIES; WATER; HEATS;
   NITROPHENOLS; SOLVATION; ENTROPIES; HYDRATION
AB Microcalorimetry, high-performance liquid chromatography (HPLC), and liquid chromatography-mass spectrometry (LC-MS) have been used to conduct a thermodynamic investigation of the hydrolysis reactions {1-naphthyl acetate(aq) + H(2)O(1) = 1-naphthol(aq) + acetate(aq)}, {4-nitrophenyl acetate(aq) + H(2)O(1) = 4-nitrophenol(aq) + acetate(aq)}, and (4-nitrophenyl alpha-L-arabinofuranoside(aq) + H(2)O(1) = L-arabinose(aq) + 4-nitrophenol(aq)}. Calorimetrically determined enthalpies of reaction Delta(r)H/(cal) were measured for all three reactions. However, since the positions of equilibrium for all of these reactions were found to lie very far to the right, it was only possible to set lower limits for the values of the apparent equilibrium constants K'. A chemical equilibrium model, together with pKs and standard enthalpies of reaction Delta(r)H degrees for the H(+) binding reactions of the reactants and products, was then used to calculate the values of Delta(r)H degrees for chemical reference reactions that correspond to the overall biochemical reactions that were studied experimentally. The values of Benson estimates of Delta(r)H degrees for the chemical reference reactions that correspond to the first of the above two reactions were, in all cases, within 16 kJ.mol(-1) of the results obtained in this study. Thermochemical network calculations led to Delta(f)H degrees = -286.4 kJ.mol(-1) for 1-napthyl acetate(aq) and Delta(f)H degrees = -364.9 kJ.mol(-1) for 4-nitrophenyl acetate(aq).
C1 [Goldberg, Robert N.; Lang, Brian E.] Natl Inst Stand & Technol, Div Biochem Sci, Gaithersburg, MD 20876 USA.
   [Decker, Stephen R.; Michener, William] Natl Renewable Energy Lab, Chem & Biosci Ctr, Golden, CO 80401 USA.
   [Goldberg, Robert N.] Univ Maryland, Dept Chem & Biochem, Baltimore, MD 21250 USA.
RP Goldberg, RN (reprint author), Natl Inst Stand & Technol, Div Biochem Sci, Gaithersburg, MD 20876 USA.
EM steve.decker@nrel.gov; robert.goldberg@nist.gov; brian.lang@nist.gov;
   william.michener@nrel.gov
NR 31
TC 0
Z9 0
U1 0
U2 2
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1520-6106
J9 J PHYS CHEM B
JI J. Phys. Chem. B
PD DEC 16
PY 2010
VL 114
IS 49
BP 16060
EP 16067
DI 10.1021/jp911225s
PG 8
WC Chemistry, Physical
SC Chemistry
GA 690GO
UT WOS:000284990700003
PM 20361764
ER

PT J
AU Huang, XP
   Wang, XW
   Cook, B
AF Huang, Xiaopeng
   Wang, Xinwei
   Cook, Bruce
TI Coherent Nanointerfaces in Thermoelectric Materials
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID EFFECTIVE THERMAL-CONDUCTIVITY; STRUCTURAL PHASE-TRANSITION;
   MOLECULAR-DYNAMICS; BOUNDARY RESISTANCE; KAPITZA RESISTANCE;
   HIGH-TEMPERATURE; HIGH FIGURE; PBTE; EFFICIENCY; MODEL
AB In recent years, a new type of bulk nanostructured thermoelectric material Ag(1-x)Pb(m)SbTe(2+m) (LAST) has been developed featuring significantly improved figure of merit (ZT) (up to 2.1 at 800 K). Its excellent ZT is largely attributed to the nanoscale coherent interface that promotes phonon scattering while having minimal effect on electron transport. Despite the experimental work on LAST material synthesis and characterization, very little knowledge is known about the nanoscale coherent interface and its effect on energy transport. In this work, we report on the first atomic observation of coherent nanointerface in a PbTe/GeTe nanocomposite and quantitative characterization of the local chemical composition and crystalline structure based on atomistic modeling. The structure coherency is confirmed with atom position imaging, atom number density distribution, and line and point coherency functions. Lattice matching occurs at the interface with lattice twisting and extremely localized strain (is an element of approximate to 0.007) in a region of 5-6 nm in GeTe. The localized strain field also helps reduce the thermal transport in the material. The effective lattice thermal conductivity of the nanocomposite at 700 K is calculated at 1.23 W m(-1) K(-1), which is lower than that of many common thermoelectric materials. The low interfacial thermal resistance 7.3 +/- 0.3 x 10(-10) m(2) K W(-1) illustrates weak interface phonon scattering by the coherent interface structure. This coherent interface is credited with very little electrical conductivity reduction, which is crucial for design of high ZT thermoelectric materials.
C1 [Huang, Xiaopeng; Wang, Xinwei] Iowa State Univ, Dept Mech Engn, Ames, IA 50011 USA.
   [Cook, Bruce] Iowa State Univ, Div Mat Sci & Engn, Ames Lab, Ames, IA 50011 USA.
RP Wang, XW (reprint author), Iowa State Univ, Dept Mech Engn, 2010 Black Engn Bldg, Ames, IA 50011 USA.
EM xwang3@iastate.edu
RI Huang, Xiaopeng/F-4697-2010
FU National Science Foundation [CMMI-0926704, CBET-0932573, CBET-0931290]
FX Partial support of this work from the National Science Foundation (Grant
   Nos. CMMI-0926704, CBET-0932573, and CBET-0931290) is gratefully
   acknowledged.
NR 61
TC 11
Z9 11
U1 1
U2 26
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 16
PY 2010
VL 114
IS 49
BP 21003
EP 21012
DI 10.1021/jp106083b
PG 10
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 690GP
UT WOS:000284990800013
ER

PT J
AU Vijayan, BK
   Dimitrijevic, NM
   Wu, JS
   Gray, KA
AF Vijayan, Baiju K.
   Dimitrijevic, Nada M.
   Wu, Jinsong
   Gray, Kimberly A.
TI The Effects of Pt Doping on the Structure and Visible Light
   Photoactivity of Titania Nanotubes
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID ENHANCED PHOTOCATALYTIC ACTIVITY; TIO2 NANOCOMPOSITES; ANATASE-TITANIA;
   SURFACE; WATER; DEGRADATION; PARTICLES; ACETALDEHYDE; OXYGEN; ARRAYS
AB Platinum-doped titania nanotubes were prepared by a hydrothermal technique to produce visible light activated catalysts. Pt loading, however, also affected the morphology of the titania nanotubes. Scanning electron microscopy and scanning transmission electron microscopy (STEM) results reveal that up to 1 mol % loading Pt-doped titania retains its nanotubular structure, but at 2 and 4 mol % Pt the nanotubes collapse to a nanopowder. High-angle annular dark field STEM images show that the Pt nanoparticles have diameters of similar to 2-5 nm and are uniformly distributed on the nanotube surface. Pt doping enhances the photoactivity of titania nanotubes in visible light for the photooxidation of acetaldehyde. Titania nanotubes doped with 0.5 mol % Pt show the maximum visible light photoactivity with a decay rate constant nearly 7 order of magnitude (0.0034 min(-1)) greater than commercially available P25 titania (0.0005 min(-1)). Electron paramagnetic resonance (EPR) spectroscopy was used to probe the mechanism by which Pt-doping alters the structure and function of the titania nanotubes. EPR spectra revealed that undercoordinated sites and oxygen deficiency on the surface of the titania nanotube are created in synthesis (calcination in hydrogen atmosphere). These surface features interact with the Pt centers to alter the optical, electronic, and chemical behavior of the titania nanotube. These results also suggest the potential for practical applications such as incorporating Pt-doped titania nanotubes with commercially available light sources for indoor air purification.
C1 [Vijayan, Baiju K.; Gray, Kimberly A.] Northwestern Univ, Dept Civil & Environm Engn, Evanston, IL 60208 USA.
   [Vijayan, Baiju K.] Northwestern Univ, Catalysis Ctr, Inst Catalysis Energy Proc, Evanston, IL 60208 USA.
   [Dimitrijevic, Nada M.] Argonne Natl Lab, Chem Sci & Engn Div, Argonne, IL 60439 USA.
   [Dimitrijevic, Nada M.] Argonne Natl Lab, Ctr Nanoscale Mat, Argonne, IL 60439 USA.
   [Wu, Jinsong] Northwestern Univ, Dept Mat Sci & Engn, Nuance Ctr, Evanston, IL 60208 USA.
RP Gray, KA (reprint author), Northwestern Univ, Dept Civil & Environm Engn, Evanston, IL 60208 USA.
EM k-gray@northwestern.edu
RI Gray, Kimberly/B-6989-2009
FU U.S. Department of Energy [DE-FG02-03 ER 15457/A003, DE-AC02-06CH11357];
   ISEN at NU
FX The work was performed under the auspices of the U.S. Department of
   Energy, under Contract DE-FG02-03 ER 15457/A003 and DE-AC02-06CH11357
   (ICEP). JW also acknowledges the support provided by a seed grant from
   ISEN at NU. Sample characterizations (XRD, SEM, TEM, and BET) were
   performed in the JB Cohen X-ray facility, NUANCE and Kung's Lab at
   Northwestern University.
NR 63
TC 92
Z9 93
U1 3
U2 58
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 16
PY 2010
VL 114
IS 49
BP 21262
EP 21269
DI 10.1021/jp108659a
PG 8
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 690GP
UT WOS:000284990800047
ER

PT J
AU He, HY
   Zapol, P
   Curtiss, LA
AF He, Haiying
   Zapol, Peter
   Curtiss, Larry A.
TI A Theoretical Study of CO2 Anions on Anatase (101) Surface
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID CARBON-DIOXIDE; ELECTRON-AFFINITIES; FORMIC-ACID; TIO2(110) SURFACE;
   AB-INITIO; TIO2; ADSORPTION; REDUCTION; DENSITY; IONIZATION
AB Binding configurations of CO2 and CO2- on perfect and oxygen-deficient anatase (101) surfaces were explored using first-principles calculations on both cluster and periodic models. The solvent effect was taken into account via the polarizable continuum model. Analysis of molecular orbitals, charge, and spin density distributions was used to help identify the radical anion CO2- adsorbed on the surface. On defect-free surfaces, it is found to bind as a bridging bidentate configuration with both oxygens coordinating to the 5-fold Ti ions. Analysis of vibrational frequencies provides a specific signature of the CO2 anion to distinguish it from other species in experiments. The reduction potential of adsorbed CO2 on a (101) surface is lower by 0.24 V than the reduction potential of a CO2 molecule, both in aqueous solution, due to the formation of hybridized orbitals, which facilitates charge transfer to CO2. The reduced (101) surface of TiO2 is much more favorable for CO2 binding with accompanying charge transfer to CO2.
C1 [He, Haiying; Zapol, Peter; Curtiss, Larry A.] Argonne Natl Lab, Div Mat Sci, Argonne, IL 60439 USA.
   [Zapol, Peter; Curtiss, Larry A.] Argonne Natl Lab, Chem Sci & Engn Div, Argonne, IL 60439 USA.
   [Curtiss, Larry A.] Argonne Natl Lab, Ctr Nanoscale Mat, Argonne, IL 60439 USA.
RP Zapol, P (reprint author), Argonne Natl Lab, Div Mat Sci, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM zapol@anl.gov
RI Zapol, Peter/G-1810-2012
OI Zapol, Peter/0000-0003-0570-9169
FU U.S. Department of Energy [DE-AC0206CH11357]
FX Work, including use of the Center for Nanoscale Materials, is supported
   by the U.S. Department of Energy under Contract DE-AC0206CH11357. We
   acknowledge grants of computer time from EMSL, a national scientific
   user facility located at Pacific Northwest National Laboratory and the
   ANL Laboratory Computing Resource Center.
NR 50
TC 62
Z9 64
U1 3
U2 69
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 16
PY 2010
VL 114
IS 49
BP 21474
EP 21481
DI 10.1021/jp106579b
PG 8
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 690GP
UT WOS:000284990800081
ER

PT J
AU Acharya, DP
   Ciobanu, CV
   Camillone, N
   Sutter, P
AF Acharya, D. P.
   Ciobanu, C. V.
   Camillone, N., III
   Sutter, P.
TI Mechanism of Electron-Induced Hydrogen Desorption from Hydroxylated
   Rutile TiO2 (110)
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID FIELD; TIO2(110); SURFACES; WATER; STM; DISSOCIATION; MANIPULATION;
   ADSORPTION; DIFFUSION; SCALE
AB The mechanism of hydrogen desorption from rutile TiO2(110)-(1 x 1) was studied by injecting electrons with controlled energy and flux into single surface hydroxyls (OH) in cryogenic scanning tunneling microscopy (STM). Desorption proceeds without a clear threshold already at much lower energies than reported previously.(1) Our analysis identifies a transfer of H atoms from the TiO2 surface to the STM tip, triggered by vibrational heating due to inelastic electron tunneling, as the desorption mechanism. The reversible H-atom transfer between sample and tip can be used as a tool to discriminate OH from other surface species on TiO2 and to control the density and configuration of OH by selective removal and redeposition of H atoms on the oxide surface.
C1 [Acharya, D. P.; Sutter, P.] Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA.
   [Ciobanu, C. V.] Colorado Sch Mines, Div Engn, Golden, CO 80401 USA.
   [Camillone, N., III] Brookhaven Natl Lab, Dept Chem, Upton, NY 11973 USA.
RP Sutter, P (reprint author), Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA.
RI Ciobanu, Cristian/B-3580-2009
FU U.S. Department of Energy [DE-AC02-98CH1-886]; Office of Basic Energy
   Sciences, Chemical Imaging Initiative [FWP CO-023]
FX Work performed under the auspices of the U.S. Department of Energy under
   contract No. DE-AC02-98CH1-886. Supported by the Office of Basic Energy
   Sciences, Chemical Imaging Initiative, FWP CO-023.
NR 26
TC 15
Z9 15
U1 1
U2 34
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 16
PY 2010
VL 114
IS 49
BP 21510
EP 21515
DI 10.1021/jp107262b
PG 6
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 690GP
UT WOS:000284990800085
ER

PT J
AU Kaspar, TC
   Droubay, T
   Chambers, SA
   Bagus, PS
AF Kaspar, Tiffany C.
   Droubay, Tim
   Chambers, Scott A.
   Bagus, Paul S.
TI Spectroscopic Evidence for Ag(III) in Highly Oxidized Silver Films by
   X-ray Photoelectron Spectroscopy
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID PHOTOIONIZATION CROSS-SECTIONS; LEVEL BINDING-ENERGIES; SURFACE
   CHARACTERIZATION; THERMAL-DECOMPOSITION; ELECTRONIC-STRUCTURE;
   TRANSITION-METALS; CHEMICAL-SHIFTS; OXIDE FILMS; SPECTRA; OXIDATION
AB In situ X-ray photoelectron spectroscopy (XPS) was utilized to identify the chemical state of silver in a range of silver oxide thin films obtained by codeposition of silver and atomic oxygen. A highly oxidized silver species was observed at an unexpectedly low Ag 3d(5/2) binding energy (BE) of 366.8 eV with an associated broad satellite at 368.2 eV; this species was assigned as Ag(III). It was found to be highly unstable in vacuum but could be regenerated by further exposure to atomic oxygen. Both BE shifts and intensity changes of the O Is peak were found to correlate with changes in the silver oxidation state. The theoretical XPS spectrum of high spin Ag(III) was calculated for both an isolated cation and an embedded AgO(6) cluster.
C1 [Kaspar, Tiffany C.; Droubay, Tim; Chambers, Scott A.] Pacific NW Natl Lab, Richland, WA 99354 USA.
   [Bagus, Paul S.] Univ N Texas, Dept Chem, Denton, TX 76203 USA.
RP Kaspar, TC (reprint author), Pacific NW Natl Lab, POB 999, Richland, WA 99354 USA.
EM tiffany.kaspar@pnl.gov
RI Bagus, Paul/M-1273-2015; Droubay, Tim/D-5395-2016
OI Droubay, Tim/0000-0002-8821-0322
FU U.S. Department of Energy (USDOE), Office of Science, Office of Basic
   Energy Sciences, Division of Materials Sciences and Engineering; USDOE's
   Office of Biological and Environmental Research at the Pacific Northwest
   National Laboratory; Office of Basic Energy Sciences, USDOE
FX This research was supported by the U.S. Department of Energy (USDOE),
   Office of Science, Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering, and performed using EMSL, a national
   scientific user facility sponsored by the USDOE's Office of Biological
   and Environmental Research and located at the Pacific Northwest National
   Laboratory. P.S.B. acknowledges support from the Geosciences Research
   Program, Office of Basic Energy Sciences, USDOE. Computer support from
   the Pittsburgh Supercomputer Center is also acknowledged.
NR 55
TC 49
Z9 49
U1 3
U2 45
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 16
PY 2010
VL 114
IS 49
BP 21562
EP 21571
DI 10.1021/jp107914e
PG 10
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 690GP
UT WOS:000284990800092
ER

PT J
AU Wang, ZT
   Du, YG
   Dohnalek, Z
   Lyubinetsky, I
AF Wang, Zhi-Tao
   Du, Yingge
   Dohnalek, Zdenek
   Lyubinetsky, Igor
TI Direct Observation of Site-Specific Molecular Chemisorption of O-2 on
   TiO2(110)
SO JOURNAL OF PHYSICAL CHEMISTRY LETTERS
LA English
DT Article
ID DENSITY-FUNCTIONAL THEORY; RUTILE TIO2(110); TITANIUM-DIOXIDE; OXYGEN
   VACANCIES; DISSOCIATION; SURFACE; PHOTOCATALYSIS; ADSORPTION; ADATOMS;
   WATER
AB Molecularly chemisorbed O-2 species were directly imaged on reduced TiO2(110) at 50 K with high-resolution scanning tunneling microscopy (STM). Two different O-2 adsorption channels, one at bridging oxygen vacancies (V-O) and another at 5-fold coordinated terminal titanium atoms (Ti-5c), have been identified. While O-2 species at the Ti-5c site appears as a single protrusion centered on the Ti-5c row, the O-2 at V-O manifests itself by a disappearance of the V-O feature. It is found that the STM tip can easily dissociate O-2 species, unless extremely low magnitude of the tunneling parameters are used. The O-2 molecules chemisorbed at low temperatures at these two distinct sites are the most likely precursors for the two O-2 dissociation channels, observed at temperatures above 150 and 230 K at the V-O and Ti-5c sites, respectively.
C1 [Wang, Zhi-Tao; Du, Yingge; Lyubinetsky, Igor] Inst Interfacial Catalysis, Environm Mol Sci Lab, Richland, WA 99352 USA.
   [Wang, Zhi-Tao; Du, Yingge; Dohnalek, Zdenek; Lyubinetsky, Igor] Pacific NW Natl Lab, Richland, WA 99352 USA.
   [Dohnalek, Zdenek] Inst Interfacial Catalysis, Fundamental & Computat Sci Directorate, Richland, WA 99352 USA.
RP Lyubinetsky, I (reprint author), Inst Interfacial Catalysis, Environm Mol Sci Lab, Richland, WA 99352 USA.
EM igor.lyubinetsky@pnl.gov
OI Dohnalek, Zdenek/0000-0002-5999-7867
FU U.S. Department of Energy (DOE) Office of Basic Energy Sciences,
   Division of Chemical Sciences at EMSL; DOE's Office of Biological and
   Environmental Research at PNNL
FX We thank Dr M. A. Henderson for stimulating discussions. This work was
   supported by the U.S. Department of Energy (DOE) Office of Basic Energy
   Sciences, Division of Chemical Sciences, and performed at EMSL, a
   national scientific user facility sponsored by the DOE's Office of
   Biological and Environmental Research and located at PNNL.
NR 38
TC 37
Z9 37
U1 1
U2 42
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1948-7185
J9 J PHYS CHEM LETT
JI J. Phys. Chem. Lett.
PD DEC 16
PY 2010
VL 1
IS 24
BP 3524
EP 3529
DI 10.1021/jz101535f
PG 6
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary; Physics, Atomic, Molecular & Chemical
SC Chemistry; Science & Technology - Other Topics; Materials Science;
   Physics
GA 696MZ
UT WOS:000285446800019
ER

PT J
AU Afnan, IR
   Gibson, BF
AF Afnan, I. R.
   Gibson, B. F.
TI Model dependence of the H-2 electric dipole moment
SO PHYSICAL REVIEW C
LA English
DT Article
ID WEAK INTERACTIONS; CONSERVATION; DEUTERON; LIMIT
AB Background: Direct measurement of the electric dipole moment (EDM) of the neutron is in the future; measurement of a nuclear EDM may well come first. The deuteron is one nucleus for which exact model calculations are feasible. Purpose: We explore the model dependence of deuteron EDM calculations. Methods: Using a separable potential formulation of the Hamiltonian, we examine the sensitivity of the deuteron EDM to variation in the nucleon-nucleon interaction. We write the EDM as the sum of two terms, the first depending on the target wave function with plane-wave intermediate states, and the second depending on intermediate multiple scattering in the P-3(1) channel, the latter being sensitive to the off-shell behavior of the P-3(1) amplitude. Results: We compare the full calculation with the plane-wave approximation result, examine the tensor force contribution to the model results, and explore the effect of short-range repulsion found in realistic, contemporary potential models of the deuteron. Conclusions: Because one-pion exchange dominates the EDM calculation, separable potential model calculations will provide an adequate description of the H-2 EDM until such time as a measurement better than 10% is obtained.
C1 [Afnan, I. R.] Flinders Univ S Australia, Sch Chem & Phys Sci, Adelaide, SA 5001, Australia.
   [Gibson, B. F.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
RP Afnan, IR (reprint author), Flinders Univ S Australia, Sch Chem & Phys Sci, GPO Box 2100, Adelaide, SA 5001, Australia.
EM Iraj.Afnan@Flinders.edu.au; bfgibson@lanl.gov
FU National Nuclear Security Administration of the US Department of Energy
   at Los Alamos National Laboratory [DE-AC52-06NA25396]
FX The work of B.F.G. was performed under the auspices of the National
   Nuclear Security Administration of the US Department of Energy at Los
   Alamos National Laboratory under Contract No. DE-AC52-06NA25396.
NR 16
TC 19
Z9 19
U1 0
U2 0
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0556-2813
J9 PHYS REV C
JI Phys. Rev. C
PD DEC 16
PY 2010
VL 82
IS 6
AR 064002
DI 10.1103/PhysRevC.82.064002
PG 8
WC Physics, Nuclear
SC Physics
GA 713LN
UT WOS:000286739600001
ER

PT J
AU Grumstrup, EM
   Johnson, JC
   Damrauer, NH
AF Grumstrup, Erik M.
   Johnson, Justin C.
   Damrauer, Niels H.
TI Enhanced Triplet Formation in Polycrystalline Tetracene Films by
   Femtosecond Optical-Pulse Shaping
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID SINGLET FISSION; SPECTROSCOPY; BACTERIORHODOPSIN; PENTACENE; MOLECULES;
   STATES
AB Polycrystalline tetracene films have been explored using weak similar to 30 fs visible laser pulses that excite the lowest singlet exciton as well as coherent vibrational motion. Transient difference spectra show a triplet absorption which arises following singlet fission (SF) and persists for 1.6 ns without decay. Adaptive pulse shaping identifies multipulse optimal fields which maximize this absorption feature by similar to 20%. These are comprised of subpulses separated by time delays well correlated with the period of lattice vibrations suggesting such modes control the yield of SF photochemistry.
C1 [Grumstrup, Erik M.; Damrauer, Niels H.] Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA.
   [Johnson, Justin C.] Natl Renewable Energy Lab, Golden, CO 80401 USA.
RP Damrauer, NH (reprint author), Univ Colorado, Dept Chem & Biochem, Campus Box 215, Boulder, CO 80309 USA.
EM niels.damrauer@colorado.edu
FU Chemical Sciences, Geosciences, and Biosciences Division, Office of
   Basic Energy Science, U.S. Department of Energy [DE-FG02-07ER15890]; 
   [DE-AC36-08GO28308]
FX Supported by the Chemical Sciences, Geosciences, and Biosciences
   Division, Office of Basic Energy Science, U.S. Department of Energy
   Grant DE-FG02-07ER15890. J. J. was supported through Contract No.
   DE-AC36-08GO28308 to NREL.
NR 26
TC 48
Z9 48
U1 5
U2 40
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 16
PY 2010
VL 105
IS 25
AR 257403
DI 10.1103/PhysRevLett.105.257403
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713QX
UT WOS:000286753600013
PM 21231627
ER

PT J
AU Sato, M
   Ichiki, K
   Takeuchi, TT
AF Sato, Masanori
   Ichiki, Kiyotomo
   Takeuchi, Tsutomu T.
TI Precise Estimation of Cosmological Parameters Using a More Accurate
   Likelihood Function
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID COSMIC SHEAR; FIELD; SIMULATIONS; CONSTRAINTS; STATISTICS; WIDE
AB The estimation of cosmological parameters from a given data set requires a construction of a likelihood function which, in general, has a complicated functional form. We adopt a Gaussian copula and constructed a copula likelihood function for the convergence power spectrum from a weak lensing survey. We show that the parameter estimation based on the Gaussian likelihood erroneously introduces a systematic shift in the confidence region, in particular, for a parameter of the dark energy equation of state w. Thus, the copula likelihood should be used in future cosmological observations.
C1 [Sato, Masanori; Ichiki, Kiyotomo] Nagoya Univ, Dept Phys, Nagoya, Aichi 4648602, Japan.
   [Sato, Masanori] Lawrence Berkeley Natl Lab, Berkeley, CA 94720 USA.
   [Takeuchi, Tsutomu T.] Nagoya Univ, Inst Adv Res, Nagoya, Aichi 4648601, Japan.
RP Sato, M (reprint author), Nagoya Univ, Dept Phys, Nagoya, Aichi 4648602, Japan.
EM masanori@a.phys.nagoya-u.ac.jp
FU JSPS; Program for Improvement of Research Environment for Young
   Researchers from Special Coordination Funds for Promoting Science and
   Technology; MEXT of Japan [20740105, 21740177, 22012004]
FX We thank Agnieszka Pollo and Masahiro Takada for comments. We also thank
   the anonymous referees for careful reading of our manuscript and very
   useful and constructive suggestions that help to clarify our paper
   further. M. S. is supported by the JSPS. T. T. T. has been supported by
   Program for Improvement of Research Environment for Young Researchers
   from Special Coordination Funds for Promoting Science and Technology.
   This work is partially supported by the Grant-in-Aid for the Scientific
   Research Fund No. 20740105 (T. T. T.), No. 21740177, No. 22012004 (K.
   I.), and Grant-in-Aid for Scientific Research on Priority Areas No. 467
   "Probing the Dark Energy through an Extremely Wide and Deep Survey with
   Subaru Telescope'' commissioned by the MEXT of Japan.
NR 23
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 16
PY 2010
VL 105
IS 25
AR 251301
DI 10.1103/PhysRevLett.105.251301
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713QX
UT WOS:000286753600004
PM 21231572
ER

PT J
AU Xi, XX
   Hwang, J
   Martin, C
   Tanner, DB
   Carr, GL
AF Xi, Xiaoxiang
   Hwang, J.
   Martin, C.
   Tanner, D. B.
   Carr, G. L.
TI Far-Infrared Conductivity Measurements of Pair Breaking in
   Superconducting Nb0.5Ti0.5N Thin Films Induced by an External Magnetic
   Field
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID PARAMAGNETIC IMPURITIES; ALUMINUM FILMS; ENERGY-GAP; ABSORPTION; STATES;
   LEAD; REFLECTIVITY; MICROWAVE; DENSITY; ALLOYS
AB We report the complex optical conductivity of a superconducting thin film of Nb0.5Ti0.5N in an external magnetic field. The field was applied parallel to the film surface and the conductivity extracted from far-infrared transmission and reflection measurements. The real part shows the superconducting gap, which we observe to be suppressed by the applied magnetic field. We compare our results with the pair-breaking theory of Abrikosov and Gor'kov and confirm directly the theory's validity for the optical conductivity.
C1 [Xi, Xiaoxiang; Hwang, J.; Martin, C.; Tanner, D. B.] Univ Florida, Dept Phys, Gainesville, FL 32611 USA.
   [Hwang, J.] Pusan Natl Univ, Dept Phys, Pusan 609735, South Korea.
   [Carr, G. L.] Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
RP Xi, XX (reprint author), Univ Florida, Dept Phys, Gainesville, FL 32611 USA.
FU U.S. Department of Energy [DE-ACO2-98CH10886, DE-FG02-02ER45984]; Korea
   NRF [20090074977]
FX This work was supported by U.S. Department of Energy through
   DE-ACO2-98CH10886 (NSLS) and DE-FG02-02ER45984 (University of Florida)
   and by Korea NRF No. 20090074977. We are grateful to P. J. Hirschfeld
   for valuable discussions and to G. Nintzel for technical support. We
   thank P. Bosland and E. Jacques for providing the NbTiN samples.
NR 34
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PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 16
PY 2010
VL 105
IS 25
AR 257006
DI 10.1103/PhysRevLett.105.257006
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713QX
UT WOS:000286753600012
PM 21231618
ER

PT J
AU Zhang, H
   Sibeck, DG
   Zong, QG
   Gary, SP
   McFadden, JP
   Larson, D
   Glassmeier, KH
   Angelopoulos, V
AF Zhang, H.
   Sibeck, D. G.
   Zong, Q. -G.
   Gary, S. P.
   McFadden, J. P.
   Larson, D.
   Glassmeier, K. -H.
   Angelopoulos, V.
TI Time History of Events and Macroscale Interactions during Substorms
   observations of a series of hot flow anomaly events
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID EARTHS BOW SHOCK; DIAMAGNETIC CAVITIES; HYBRID SIMULATION; SOLAR-WIND;
   ION-BEAM; UPSTREAM; PLASMA; INSTABILITIES; MAGNETOSHEATH; EVOLUTION
AB A series of seven hot flow anomaly (HFA) events has been observed by the Time History of Events and Macroscale Interactions during Substorms (THEMIS) C spacecraft just upstream from the subsolar bow shock from 0100 to 1300 UT on 19 August 2008. Both young (no shocks at edges, two distinct ion populations) and mature (strong shocks at edges, a single hot ion population) HFAs have been observed. Further upstream, THEMIS B observed four proto-HFAs (density and magnetic field strength depletions, plasma heating but no flow deflections) which later developed into HFAs observed by THEMIS C. We present evidence indicating that electromagnetic right-hand resonant ion beam instabilities heat ions inside HFAs. Observations of small-amplitude perturbations (Delta B/B < 50%) consistent with the resonant ion beam instability in a proto-HFA, 30 s electromagnetic waves (Delta B/B similar to 1) in a young HFA, and magnetic pulsations in a mature HFA (Delta B/B similar to 4) indicate that they are at early, middle, and late (nonlinear) stages of the electromagnetic right-hand resonant ion beam instabilities. Both young and mature HFAs are associated with strong electromagnetic waves near the lower hybrid frequency (0.1-1 Hz). The lower hybrid waves are the likely source of the electron heating inside HFAs. THEMIS B observations of four proto-HFAs which later developed into HFAs observed by THEMIS C indicate that these four HFAs might extend beyond 14 R(E) upstream from the bow shock, while the other three HFAs may extend between 5 and 14 R(E) upstream from the bow shock. We present an example of an HFA that lies displaced toward the side of the tangential discontinuity with a quasi-parallel bow shock configuration rather than lying centered on the driving interplanetary magnetic field discontinuity.
C1 [Zhang, H.] Univ Alaska Fairbanks, Inst Geophys, Fairbanks, AK 99775 USA.
   [Zhang, H.; Sibeck, D. G.] NASA, Goddard Space Flight Ctr, Greenbelt, MD 20771 USA.
   [Zong, Q. -G.] Univ Massachusetts, Ctr Atmospher Sci, Lowell, MA 01854 USA.
   [Gary, S. P.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [McFadden, J. P.; Larson, D.] Univ Calif Berkeley, Space Sci Lab, Berkeley, CA 94720 USA.
   [Glassmeier, K. -H.] Tech Univ Carolo Wilhelmina Braunschweig, Inst Geophys & Extraterr Phys, D-38106 Braunschweig, Germany.
   [Angelopoulos, V.] Univ Calif Los Angeles, Inst Geophys & Planetary Phys, Dept Earth & Space Sci, Los Angeles, CA 90065 USA.
RP Zhang, H (reprint author), Univ Alaska Fairbanks, Inst Geophys, 903 Koyukuk Dr,POB 757320, Fairbanks, AK 99775 USA.
EM hzhang@gi.alaska.edu
RI Sibeck, David/D-4424-2012
FU NSF [AGS-0963111]
FX The first author thanks Nick Omidi for helpful discussions. This work is
   partly supported by NSF grant AGS-0963111.
NR 37
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U2 6
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0148-0227
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 15
PY 2010
VL 115
AR A12235
DI 10.1029/2009JA015180
PG 15
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 696VK
UT WOS:000285469300001
ER

PT J
AU Alexander, CS
   Asay, JR
   Haill, TA
AF Alexander, C. S.
   Asay, J. R.
   Haill, T. A.
TI Magnetically applied pressure-shear: A new method for direct measurement
   of strength at high pressure
SO JOURNAL OF APPLIED PHYSICS
LA English
DT Article
ID HIGH-STRAIN-RATE; COMPRESSION; ALUMINUM; SHOCK
AB A new experimental technique to measure material shear strength at high pressures has been developed for use on magnetohydrodynamic (MHD) drive pulsed power platforms. By applying an external static magnetic field to the sample region, the MHD drive directly induces a shear stress wave in addition to the usual longitudinal stress wave. Strength is probed by passing this shear wave through a sample material where the transmissible shear stress is limited to the sample strength. The magnitude of the transmitted shear wave is measured via a transverse velocity interferometer system from which the sample strength is determined. (C) 2010 American Institute of Physics. [doi:10.1063/1.3517790]
C1 [Alexander, C. S.; Asay, J. R.; Haill, T. A.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
RP Alexander, CS (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
EM calexa@sandia.gov
FU U.S. Department of Energy's National Nuclear Security Administration
   [DE-AC04-94AL85000]
FX The authors wish to thank the Sandia DICE team for their dedication and
   diligence in fielding these new experiments, Tracy Vogler for helpful
   discussions, and Ron Kaye and his team for assistance in designing and
   Jim Puissant for fabricating the Helmholtz coils used to produce the
   quasi-static magnetic field. Sandia National Laboratories is a
   multiprogram laboratory managed and operated by Sandia Corporation, a
   wholly owned subsidiary of Lockheed Martin Corporation, for the U.S.
   Department of Energy's National Nuclear Security Administration under
   Contract No. DE-AC04-94AL85000.
NR 15
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U1 0
U2 12
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0021-8979
J9 J APPL PHYS
JI J. Appl. Phys.
PD DEC 15
PY 2010
VL 108
IS 12
AR 126101
DI 10.1063/1.3517790
PG 3
WC Physics, Applied
SC Physics
GA 700UC
UT WOS:000285768800142
ER

PT J
AU Mao, JF
   Shi, XY
   Ma, LJ
   Kaiser, DP
   Li, QX
   Thornton, PE
AF Mao, Jiafu
   Shi, Xiaoying
   Ma, Lijuan
   Kaiser, Dale P.
   Li, Qingxiang
   Thornton, Peter E.
TI Assessment of Reanalysis Daily Extreme Temperatures with China's
   Homogenized Historical Dataset during 1979-2001 Using Probability
   Density Functions
SO JOURNAL OF CLIMATE
LA English
DT Article
ID SURFACE-TEMPERATURE; SOIL-MOISTURE; CLIMATE EXTREMES; NCEP-NCAR;
   PRECIPITATION; TRENDS; SIMULATIONS; PROJECTIONS; AUSTRALIA; WEATHER
AB Using a recently homogenized observational daily maximum (T-MAX) and minimum temperature (TmIN) dataset for China, the extreme temperatures from the 40-yr ECMWF Re-Analysis (ERA-40), the Japanese 25-year Reanalysis (JRA-25), the NCEP/Department of Energy Global Reanalysis 2 (NCEP-2), and the ECMWF's ERA-Interim (ERAIn) reanalyses for summer (June August) and winter (December February) are assessed by probability density functions for the periods 1979-2001 and 1990-2001. For 1979-2001, no single reanalysis appears to be consistently accurate across eight areas examined over China. The ERA-40 and J RA-25 reanalyses show similar representations and close skill scores over most of the regions of China for both seasons. NCEP-2 generally has lower skill scores, especially over regions with complex topography. The regional and seasonal differences identified are commonly associated with different geographical locations and the methods used to diagnose these quantities. All the selected reanalysis products exhibit better performance for winter compared to summer over most regions of China. The TmAx values from the reanalysis tend to be systematically underestimated, while TraiN is systematically closer to observed values than T-MIN. Comparisons of the reanalyses to reproduce the 99.7 percentiles for TTMAX and 0.3 percentiles for T-MIN show that most reanalyses tend to underestimate the 99.7 percentiles in maximum temperature both in summer and winter. For the 0.3 percentiles in T-MIN, NCEP-2 is relatively inaccurate with a -12 degrees C cold bias over the Qinghai Tibetan Plateau in winter. ERA-40 and J RA-25 generally overestimate the extreme T-MIN, and the extreme percentage differences of ERA-40 and JRA-25 are quite similar over all of the regions. The results are generally similar for 1990-2001, but in contrast to the other three reanalysis products the newly released ERAIn is very reasonable, especially for wintertime T-MIN, with a skill score greater than 0.83 for each region of China. This demonstrates the great potential of this product for use in future impact assessments on continental scales where those impacts are based on extreme temperatures.
C1 [Mao, Jiafu; Kaiser, Dale P.] Oak Ridge Natl Lab, Div Environm Sci, Carbon Dioxide Informat Anal Ctr, Oak Ridge, TN 37831 USA.
   [Ma, Lijuan] China Meteorol Adm, Natl Climate Ctr, Beijing, Peoples R China.
RP Mao, JF (reprint author), Oak Ridge Natl Lab, Div Environm Sci, Carbon Dioxide Informat Anal Ctr, MS6301,POB 2008, Oak Ridge, TN 37831 USA.
EM maoj@ornl.gov
RI Thornton, Peter/B-9145-2012; Mao, Jiafu/B-9689-2012; Shi,
   Xiaoying/C-4447-2012
OI Thornton, Peter/0000-0002-4759-5158; Mao, Jiafu/0000-0002-2050-7373;
   Shi, Xiaoying/0000-0001-8994-5032
FU U.S. Department of Energy, Office of Science; U.S. Department of Energy
   [DE-AC05-00OR22725]
FX This research is supported by the U.S. Department of Energy, Office of
   Science, Biological and Environmental Research (BER) programs, and was
   performed at Oak Ridge National Laboratory (ORNL). ORNL is managed by
   UT-Battelle, LLC, for the U.S. Department of Energy under Contract
   DE-AC05-00OR22725. NCEP-2 reanalysis data were provided by the
   NOAA/OAR/ESRL PSD, Boulder, Colorado, from its Web site (available at
   http://www.cdc.noaa.gov/). The JRA-25 data were provided from the
   cooperative research project of the JRA-25 long-term reanalysis by the
   Japan Meteorological Agency (JMA) and the Central Research Institute of
   Electric Power Industry (CRIEPI). We are very grateful to ECMWF for
   providing access to the ERA-40 and ERA In data. Special thanks are also
   given to Prof. Andy Pitman and Dr. Sarah Perkins from the University of
   New South Wales, and to Wilfred M. Post at ORNL for their helpful
   discussions.
NR 57
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U1 0
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PU AMER METEOROLOGICAL SOC
PI BOSTON
PA 45 BEACON ST, BOSTON, MA 02108-3693 USA
SN 0894-8755
EI 1520-0442
J9 J CLIMATE
JI J. Clim.
PD DEC 15
PY 2010
VL 23
IS 24
BP 6605
EP 6623
DI 10.1175/2010JCLI3581.1
PG 19
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA 710YS
UT WOS:000286553500010
ER

PT J
AU Byun, TS
   Kim, JH
   Yoon, JH
   Hoelzer, DT
AF Byun, Thak Sang
   Kim, Jeoung Han
   Yoon, Ji Hyun
   Hoelzer, David T.
TI High temperature fracture characteristics of a nanostructured ferritic
   alloy (NFA)
SO JOURNAL OF NUCLEAR MATERIALS
LA English
DT Article
ID DISPERSION-STRENGTHENED STEELS; RESEARCH-AND-DEVELOPMENT;
   MECHANICAL-PROPERTIES; NEUTRON-IRRADIATION; MARTENSITIC STEELS; TENSILE
   PROPERTIES; MOLYBDENUM; STABILITY; OXIDES; 14YWT
AB The nanostructured ferritic alloys (NFAs) have been developed to improve high temperature strength and radiation resistance by refining grains and including nanoclusters Among the key properties of NFAs needed to be assessed for advanced reactor applications the cracking resistance at high temperatures has not been well known In this work therefore the high temperature fracture behavior has been investigated for the latest nanostructured ferritic alloy 14YWT (SM10) The fracture toughness of the alloy was above 140 MPa root mat low temperatures room temperature (RT) and 200 degrees C but decreased to a low fracture toughness range of 52-82 MPa root mat higher temperatures up to 700 degrees C This behavior was explained by the fractography results indicating that the unique nanostructure of 14YWT alloy produced shallow plasticity layers at high temperatures and a low-ductility grain boundary debonding occurred at 700 degrees C The discussion also proposes methods to improve resistance to cracking Published by Elsevier B V
C1 [Byun, Thak Sang; Kim, Jeoung Han; Yoon, Ji Hyun; Hoelzer, David T.] Oak Ridge Natl Lab, Oak Ridge, TN 37831 USA.
RP Byun, TS (reprint author), Oak Ridge Natl Lab, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA.
RI Hoelzer, David/L-1558-2016
FU US Department of Energy Office of Nuclear Energy [DE-AC05-000R22725];
   Ministry of Knowledge Economy of the Republic of Korea; UT-Battelle LLC
FX This research was sponsored by US Department of Energy Office of Nuclear
   Energy under Contract DE-AC05-000R22725 with UT-Battelle LLC It was also
   sponsored by the 2009 Scientist & Engineers Exchange Program supported
   by the Ministry of Knowledge Economy of the Republic of Korea The
   authors would like to express special thanks to Drs J T Busby and L Tan
   for their technical reviews and thoughtful comments
NR 26
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U1 0
U2 16
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0022-3115
J9 J NUCL MATER
JI J. Nucl. Mater.
PD DEC 15
PY 2010
VL 407
IS 2
BP 78
EP 82
DI 10.1016/j.jnucmat.2010.09.031
PG 5
WC Materials Science, Multidisciplinary; Nuclear Science & Technology
SC Materials Science; Nuclear Science & Technology
GA 700AL
UT WOS:000285704400002
ER

PT J
AU Li, YL
   Hu, SY
   Sun, X
   Gao, F
   Henager, CH
   Khaleel, M
AF Li, Yulan
   Hu, Shenyang
   Sun, Xin
   Gao, Fei
   Henager, Charles H., Jr.
   Khaleel, Mohammad
TI Phase-field modeling of void migration and growth kinetics in materials
   under irradiation and temperature field
SO JOURNAL OF NUCLEAR MATERIALS
LA English
DT Article
ID RAY COMPUTER-TOMOGRAPHY; FISSION-GAS BUBBLES; RADIATION-DAMAGE; PORE
   MIGRATION; UO2 FUEL; SIMULATION; SOLIDS; ALLOYS; DYNAMICS; GRADIENT
AB A phase-field model is developed to investigate the migration of vacancies interstitials and voids during irradiation in a thermal gradient Void growth kinetics during irradiation are also modeled The model accounts for the generation of defects including vacancies and interstitials associated with the radiation damage recombination of vacancies and interstitials defect diffusion and defect sinks The effect of void size vacancy concentration vacancy generation rate recombination rate and temperature gradient on a single void migration and growth is parametrically studied The results demonstrate that a temperature gradient causes void migration and defect fluxes i e the Soret effect which affects void stability and growth kinetics It is found that (1) void migration mobility is Independent of void size which is in agreement with the theoretical prediction under the assumption of bulk diffusion controlled migration (2) void migration mobility strongly depends on the temperature gradient and (3) the effect of defect concentration generation rate and recombination rate on void migration mobility is minor although they strongly influence void growth kinetics Published by Elsevier B V
C1 [Li, Yulan; Hu, Shenyang; Sun, Xin; Gao, Fei; Henager, Charles H., Jr.; Khaleel, Mohammad] Pacific NW Natl Lab, Richland, WA 99352 USA.
RP Li, YL (reprint author), Pacific NW Natl Lab, 902 Battelle Blvd, Richland, WA 99352 USA.
RI Gao, Fei/H-3045-2012; 
OI khaleel, mohammad/0000-0001-7048-0749; HU, Shenyang/0000-0002-7187-3082;
   Henager, Chuck/0000-0002-8600-6803
FU US Department of Energy [DE-AC05-76RL01830]
FX This research was supported by the US Department of Energy s Nuclear
   Energy Advance Modeling and Simulation (NEAMS) Program in Pacific
   Northwest National Laboratory which is operated by Battelle Memorial
   Institute for the US Department of Energy under Contract No
   DE-AC05-76RL01830
NR 42
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Z9 14
U1 1
U2 36
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0022-3115
EI 1873-4820
J9 J NUCL MATER
JI J. Nucl. Mater.
PD DEC 15
PY 2010
VL 407
IS 2
BP 119
EP 125
DI 10.1016/j.jnucmat.2010.09.048
PG 7
WC Materials Science, Multidisciplinary; Nuclear Science & Technology
SC Materials Science; Nuclear Science & Technology
GA 700AL
UT WOS:000285704400008
ER

PT J
AU del Rio, JG
   Hayes, DG
   Urban, VS
AF del Rio, Javier Gomez
   Hayes, Douglas G.
   Urban, Volker S.
TI Partitioning behavior of an acid-cleavable, 1,3-dioxolane alkyl
   ethoxylate, surfactant in single and binary surfactant mixtures for
   2-and 3-phase microemulsion systems according to ethoxylate head group
   size
SO JOURNAL OF COLLOID AND INTERFACE SCIENCE
LA English
DT Article
DE Aerosol OT; Alkyl ethoxylate surfactants; Alkyl glucoside surfactant;
   Cleavable surfactants; HPLC analysis of surfactants; Microemulsions;
   Nonionic surfactants; Partition coefficients; Small angle neutron
   scattering; Thermodynamic model
ID OIL-WATER SYSTEMS; POLYETHOXYLATED SURFACTANTS; ALKYLPHENOL SURFACTANTS;
   NONIONIC SURFACTANTS; PHYSICOCHEMICAL FORMULATION; NONPOLAR-SOLVENTS;
   PHASE-BEHAVIOR; AEROSOL OT; PART II; TEMPERATURE
AB Partition coefficients for a pH-degradable 1 3-dioxolane alkyl ethoxylate surfactant 4 CH3O (CH2CH2O)(5) (6)-CH2 22 (CH2)(12)CH3 2 (CH2) CH3 1 3 dioxolane or cyclic ketal surfactant CK-2 13-E-5 (6) (ave) between isooctane- and water rich phases of 2- and 3-phase microemulsion systems (K-n) were determined as functions of the ethoxylate size n and temperature for the neat surfactant and its binary surfactant mixtures to understand the partitioning of alkyl ethoxylates possessing a broad distribution of ethoxylate size and to determine conditions required for formation of 3-phase microemulsion systems at an optimal temperature where phase separation occurs rapidly important for protein purification via proteins selective partitioning to the middle phase driven by affinity to the second surfactant of the binary mixture A semi-empirical thermodynamic mathematical model described the partitioning data well provided optimal temperature values consistent with phase diagrams and theory and demonstrated that the tail region of CK-2 13-E-5 (6) (ave) is more polar than the hydrophobes of fatty alcohol ethoxylates The addition of Aerosol-OT (AOT) removed the temperature sensitivity of CK-2 13 E-5 S-6 ave partitioning producing 3-phase microemulsion systems between 20 degrees C and 40 degrees C Analysis of the bottom phases of the 2- and 3 phase microemulsion systems formed by CK-2 13-E-5 6 ave via small-angle neutron scattering demonstrated the presence of spherical monodisperse oil-in-water microemulsions (C) 2010 Elsevier Inc All rights reserved
C1 [Hayes, Douglas G.] Univ Tennessee, Dept Biosyst Engn & Soil Sci, Knoxville, TN 37996 USA.
   [del Rio, Javier Gomez; Hayes, Douglas G.] Univ Tennessee, Dept Chem & Biomol Engn, Knoxville, TN 37996 USA.
   [Urban, Volker S.] Oak Ridge Natl Lab, Div Chem Sci, Oak Ridge, TN 37831 USA.
RP Hayes, DG (reprint author), Univ Tennessee, Dept Biosyst Engn & Soil Sci, 2506 EJ Chapman Dr, Knoxville, TN 37996 USA.
RI Urban, Volker/N-5361-2015
OI Urban, Volker/0000-0002-7962-3408
FU National Science Foundation [BES-0437507]; US Department of Energy
   [DE-AC05-00OR22725]
FX This work was supported by the National Science Foundation grant
   BES-0437507 The research performed at Oak Ridge National Laboratory's
   Center for Structural Molecular Biology (CSMB) was supported by the
   Office of Biological and Environmental Research using facilities
   supported by the US Department of Energy managed by UT-Battelle LLC
   under Contract No DE-AC05-00OR22725 We thank Dr Guangming Luo for help
   with SANS data collection and Dr J S Lin for technical assistance We
   acknowledge the support of the National Institute of Standards and
   Technology US Department of Commerce and ORNL US Department of Energy in
   providing SANS facilities used in this work
NR 37
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U1 0
U2 14
PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0021-9797
EI 1095-7103
J9 J COLLOID INTERF SCI
JI J. Colloid Interface Sci.
PD DEC 15
PY 2010
VL 352
IS 2
BP 424
EP 435
DI 10.1016/j.jcis.2010.08.076
PG 12
WC Chemistry, Physical
SC Chemistry
GA 679SC
UT WOS:000284180100029
ER

PT J
AU Ahn, HK
   Kim, BC
   Jun, SH
   Chang, MS
   Lopez-Ferrer, D
   Smith, RD
   Gu, MB
   Lee, SW
   Kim, BS
   Kim, J
AF Ahn, Hye-Kyung
   Kim, Byoung Chan
   Jun, Seung-Hyun
   Chang, Mun Seock
   Lopez-Ferrer, Daniel
   Smith, Richard D.
   Gu, Man Bock
   Lee, Sang-Won
   Kim, Beom Soo
   Kim, Jungbae
TI Robust Trypsin Coating on Electrospun Polymer Nanofibers in Rigorous
   Conditions and Its Uses for Protein Digestion
SO BIOTECHNOLOGY AND BIOENGINEERING
LA English
DT Article
DE enzyme coating; trypsin; electrospun nanofibers; protein digestion
ID ENZYME STABILIZATION; TRYPTIC DIGESTION; IDENTIFICATION; PROTEOLYSIS;
   THERMOSTABILITY; IMMOBILIZATION; NANOPARTICLES; PRINCIPLES; STABILITY;
   INCREASE
AB An efficient protein digestion in proteomic analysis requires the stabilization of proteases such as trypsin. In the present work, trypsin was stabilized in the form of enzyme coating on electrospun polymer nanofibers (EC-TR), which crosslinks additional trypsin molecules onto covalently attached trypsin (CA-TR). EC-TR showed better stability than CA-TR in rigorous conditions, such as at high temperatures of 40 and 50 degrees C, in the presence of organic co-solvents, and at various pH's. For example, the half-lives of CA-TR and EC-TR were 1.42 and 231 h at 40 degrees C, respectively. The improved stability of EC-TR can be explained by covalent linkages on the surface of trypsin molecules, which effectively inhibits the denaturation, autolysis, and leaching of trypsin. The protein digestion was performed at 40 degrees C by using both CA-TR and EC-TR in digesting a model protein, enolase. EC-TR showed better performance and stability than CA-TR by maintaining good performance of enolase digestion under recycled uses for a period of 1 week. In the same condition, CA-TR showed poor performance from the beginning and could not be used for digestion at all after a few usages. The enzyme coating approach is anticipated to be successfully employed not only for protein digestion in proteomic analysis but also for various other fields where the poor enzyme stability presently hampers the practical applications of enzymes. Biotechnol. Bioeng. 2010;107: 917-923. (C) 2010 Wiley Periodicals, Inc.
C1 [Ahn, Hye-Kyung] KRICT, Taejon, South Korea.
   [Kim, Byoung Chan] Inst Pasteur Korea, Songnam, Gyeonggi Do, South Korea.
   [Jun, Seung-Hyun; Kim, Jungbae] Korea Univ, Dept Chem & Biol Engn, Seoul 136701, South Korea.
   [Chang, Mun Seock; Lee, Sang-Won] Korea Univ, Dept Chem, Seoul 136701, South Korea.
   [Lopez-Ferrer, Daniel; Smith, Richard D.] Pacific NW Natl Lab, Richland, WA 99352 USA.
   [Gu, Man Bock] Korea Univ, Coll Life Sci & Biotechnol, Seoul 136701, South Korea.
   [Kim, Beom Soo] Chungbuk Natl Univ, Dept Chem Engn, Cheongju 361763, Chungbuk, South Korea.
RP Ahn, HK (reprint author), KRICT, Taejon, South Korea.
EM bskim@chungbuk.ac.kr; jbkim3@korea.ac.kr
RI Smith, Richard/J-3664-2012; Lee, Sang-Won/H-6760-2013; Kim, Sang
   Hoon/H-9911-2015; 
OI Smith, Richard/0000-0002-2381-2349; Lee, Sang-Won/0000-0002-5042-0084;
   Jun, Seung-Hyun/0000-0002-7978-958X
FU Korean Ministry of Education, Science & Technology (MEST) [2009-0082314,
   2009-0059861, 2009-0075638, FPR08A1-010]; Ministry of Knowledge Economy,
   Republic of Korea; NIH National Center for Research Resources (NCRR)
   [RR018522]; NIH National Cancer Institute [R21 CA12619-01]; Pacific
   Northwest National Laboratory (PNNL)
FX Portions of this work were supported by grants from the National
   Research Foundation (NRF) funded by the Korean Ministry of Education,
   Science & Technology (MEST) (Nos. 2009-0082314, 2009-0059861, and
   2009-0075638). S.L. and M.C. acknowledge the Frontier Functional
   Proteomics Project (FPR08A1-010) of 21C from MEST and the Fundamental
   R&D Program for Core Technology of Materials funded by the Ministry of
   Knowledge Economy, Republic of Korea. D.L.F. and R.D.S. also acknowledge
   the NIH National Center for Research Resources (NCRR, RR018522), NIH
   National Cancer Institute (R21 CA12619-01), and the Pacific Northwest
   National Laboratory's (PNNL) Laboratory Directed Research and
   Development Program.
NR 33
TC 15
Z9 15
U1 0
U2 19
PU JOHN WILEY & SONS INC
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN, NJ 07030 USA
SN 0006-3592
J9 BIOTECHNOL BIOENG
JI Biotechnol. Bioeng.
PD DEC 15
PY 2010
VL 107
IS 6
BP 917
EP 923
DI 10.1002/bit.22895
PG 7
WC Biotechnology & Applied Microbiology
SC Biotechnology & Applied Microbiology
GA 677RY
UT WOS:000284010700002
PM 20683853
ER

PT J
AU Sharp, JO
   Sales, CM
   Alvarez-Cohen, L
AF Sharp, Jonathan O.
   Sales, Christopher M.
   Alvarez-Cohen, Lisa
TI Functional Characterization of Propane-Enhanced N-Nitrosodimethylamine
   Degradation by Two Actinomycetales
SO BIOTECHNOLOGY AND BIOENGINEERING
LA English
DT Article
DE cometabolism; monooxygenase; Monod; biodegradation; competition; NDMA
ID AEROBIC BIODEGRADATION; NDMA; WATER; NITROSAMINES; SOILS; MONOOXYGENASE;
   DIMETHYLAMINE; OXIDATION; BACTERIA; PCR
AB Propane-induced cometabolic degradation of n-nitrosodimethylamine (NDMA) by two propanotrophs is characterized through kinetic, gene presence, and expression studies. After growth on propane, resting cells of Rhodococcus sp. RR1 possessed a maximum transformation rate (v(max),(n)) of 44 +/- 5 mu g NDMA (mg protein)(-1) h(-1); the rate for Mycobacterium vaccae (austroafricanum) JOB-5 was modestly lower with v(max,n) of 28 +/- 3 mu g NDMA (mg protein)(-1) h(-1). Both strains were capable of degrading environmentally relevant, trace quantities of NDMA to below the experimental limit of detection, calculated as 20 mu g NDMA L(-1). However, a comparison of half saturation constants (K(s,n)) and NDMA degradation in the presence of propane revealed pronounced differences between the strains. The K(s,n) for strain RR1 was 36 +/- 10 mu g NDMA L(-1) while the propane concentration needed to inhibit NDMA rates by 50% (K(inh)) occurred at 7,700 mu g propane L(-1) (R(2) = 0.9669). In contrast, strain JOB-5 had a markedly lower affinity for NDMA verses propane with a calculated K(s,n) of 2,200 +/- 1,000 mu g NDMA L(-1) and K(inh) of 120 mu g propane L(-1) (R(2) = 0.9895). Genomic and transcriptional investigations indicated that the functional enzymes involved in NDMA degradation and propane metabolism are different for each strain. For Rhodococcus sp. RR1, a putative propane monooxygenase (PrMO) was identified and implicated in NDMA oxidation. In contrast, JOB-5 was not found to possess a PrMO homologue and two functionally analogous alkane monoxygenases (AlkMOs) were not induced by growth on propane. Differences between the PrMO in this Rhodococcus and the unidentified enzyme(s) in the Mycobacterium may explain differences in NDMA degradation and inhibition kinetics between these strains. Biotechnol. Bioeng. 2010;107: 924-932. (C) 2010 Wiley Periodicals, Inc.
C1 [Sharp, Jonathan O.] Colorado Sch Mines, Environm Sci & Engn Div, Golden, CO 80401 USA.
   [Sales, Christopher M.; Alvarez-Cohen, Lisa] Univ Calif Berkeley, Dept Civil & Environm Engn, Berkeley, CA 94720 USA.
   [Alvarez-Cohen, Lisa] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Earth Sci, Berkeley, CA 94720 USA.
RP Sharp, JO (reprint author), Colorado Sch Mines, Environm Sci & Engn Div, Golden, CO 80401 USA.
EM jsharp@mines.edu
RI Sharp, Jonathan/A-4893-2013; Sales, Christopher/N-6560-2013
OI Sharp, Jonathan/0000-0002-2942-1066; Sales,
   Christopher/0000-0002-1781-8752
FU Water Reuse Foundation [WRF-02-002]; Strategic Environmental Research
   and Development Program [SERDP CU-1417]
FX The authors thank two anonymous reviewers for their constructive and
   supportive comments. Professor Daniel Arp at Oregon State University
   generously supplied strain JOB-5. Prof. Lindsay Eltis and Prof. Bill
   Mohn from the University of British Colombia supplied strain RHA1. This
   work was funded by grants provided by the Water Reuse Foundation
   (WRF-02-002) and the Strategic Environmental Research and Development
   Program (SERDP CU-1417).
NR 43
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U1 0
U2 15
PU JOHN WILEY & SONS INC
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN, NJ 07030 USA
SN 0006-3592
J9 BIOTECHNOL BIOENG
JI Biotechnol. Bioeng.
PD DEC 15
PY 2010
VL 107
IS 6
BP 924
EP 932
DI 10.1002/bit.22899
PG 9
WC Biotechnology & Applied Microbiology
SC Biotechnology & Applied Microbiology
GA 677RY
UT WOS:000284010700003
PM 20717971
ER

PT J
AU Carrion, B
   Huang, CP
   Ghajar, CM
   Kachgal, S
   Kniazeva, E
   Jeon, NL
   Putnam, AJ
AF Carrion, Bita
   Huang, Carlos P.
   Ghajar, Cyrus M.
   Kachgal, Suraj
   Kniazeva, Ekaterina
   Jeon, Noo Li
   Putnam, Andrew J.
TI Recreating the Perivascular Niche Ex Vivo Using a Microfluidic Approach
SO BIOTECHNOLOGY AND BIOENGINEERING
LA English
DT Article
DE stem cell niche; capillary; mesenchymal stem cell; pericyte; integrin;
   3D culture
ID MESENCHYMAL STEM-CELLS; CAPILLARY MORPHOGENESIS; VASCULAR NICHE;
   ANGIOGENESIS; THERAPIES; COCULTURE; MATRICES; DISEASE; COMPLEX
AB Stem cell niches are composed of numerous microenvironmental features, including soluble and insoluble factors, cues from other cells, and the extracellular matrix (ECM), which collectively serve to maintain stem cell quiescence and promote their ability to support tissue homeostasis. A hallmark of many adult stem cell niches is their proximity to the vasculature in vivo, a feature common to neural stem cells, mesenchymal stem cells (MSCs) from bone marrow and adipose tissue, hematopoietic stem cells, and many tumor stem cells. In this study, we describe a novel 3D microfluidic device (MFD) as a model system in which to study the molecular regulation of perivascular stem cell niches. Endothelial cells (ECs) suspended within 3D fibrin gels patterned in the device adjacent to stromal cells (either fibroblasts or bone marrow-derived MSCs) executed a morphogenetic process akin to vasculogenesis, forming a primitive vascular plexus and maturing into a robust capillary network with hollow well-defined lumens. Both MSCs and fibroblasts formed pericytic associations with the ECs but promoted capillary morphogenesis with distinct kinetics. Biochemical assays within the niche revealed that the perivascular association of MSCs required interaction between their alpha 6 beta 1 integrin receptor and EC-deposited laminin. These studies demonstrate the potential of this physiologically relevant ex vivo model system to study how proximity to blood vessels may influence stem cell multipotency. Biotechnol. Bioeng. 2010;107: 1020-1028. (C) 2010 Wiley Periodicals, Inc.
C1 [Carrion, Bita; Jeon, Noo Li; Putnam, Andrew J.] Univ Calif Irvine, Dept Chem Engn & Mat Sci, Irvine, CA 92717 USA.
   [Huang, Carlos P.; Ghajar, Cyrus M.; Kachgal, Suraj; Kniazeva, Ekaterina; Jeon, Noo Li; Putnam, Andrew J.] Univ Calif Irvine, Dept Biomed Engn, Irvine, CA USA.
   [Ghajar, Cyrus M.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Life Sci, Dept Canc & DNA Damage Responses, Berkeley, CA 94720 USA.
   [Jeon, Noo Li] Seoul Natl Univ, Sch Mech & Aerosp Engn, Seoul, South Korea.
   [Putnam, Andrew J.] Univ Michigan, Dept Biomed Engn, Ann Arbor, MI 48109 USA.
RP Putnam, AJ (reprint author), Univ Calif Irvine, Dept Chem Engn & Mat Sci, Irvine, CA 92717 USA.
EM putnam@umich.edu
RI Putnam, Andrew/E-8643-2010
OI Putnam, Andrew/0000-0002-1262-4377
FU US National Institutes of Health [R01 HL085339]; California Institute
   for Regenerative Medicine [RN1-00556]; American Heart Association;
   Ministry of Education, Science and Technology [R31-2008-000-10083-0];
   National Center for Research Resources of the National Institutes of
   Health [PHS 5 P41-RR003155]
FX Contract grant sponsor: US National Institutes of Health; Contract grant
   number: R01 HL085339; Contract grant sponsor: California Institute for
   Regenerative Medicine; Contract grant number: RN1-00556; Contract grant
   sponsor: American Heart Association; Contract grant sponsor: Ministry of
   Education, Science and Technology; Contract grant number:
   R31-2008-000-10083-0; Contract grant sponsor: National Center for
   Research Resources of the National Institutes of Health; Contract grant
   number: PHS 5 P41-RR003155
NR 32
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U1 5
U2 36
PU JOHN WILEY & SONS INC
PI HOBOKEN
PA 111 RIVER ST, HOBOKEN, NJ 07030 USA
SN 0006-3592
J9 BIOTECHNOL BIOENG
JI Biotechnol. Bioeng.
PD DEC 15
PY 2010
VL 107
IS 6
BP 1020
EP 1028
DI 10.1002/bit.22891
PG 9
WC Biotechnology & Applied Microbiology
SC Biotechnology & Applied Microbiology
GA 677RY
UT WOS:000284010700013
PM 20672286
ER

PT J
AU Spellman, PT
AF Spellman, P. T.
TI Modeling Sensitivity to Therapeutic Agents
SO CANCER RESEARCH
LA English
DT Meeting Abstract
C1 [Spellman, P. T.] Lawrence Berkeley Natl Lab, Berkeley, CA USA.
NR 0
TC 0
Z9 0
U1 0
U2 0
PU AMER ASSOC CANCER RESEARCH
PI PHILADELPHIA
PA 615 CHESTNUT ST, 17TH FLOOR, PHILADELPHIA, PA 19106-4404 USA
SN 0008-5472
EI 1538-7445
J9 CANCER RES
JI Cancer Res.
PD DEC 15
PY 2010
VL 70
SU 24
MA ES8-2
DI 10.1158/0008-5472.SABCS10-ES8-2
PG 1
WC Oncology
SC Oncology
GA V43QL
UT WOS:000209695800370
ER

PT J
AU Ogura, K
   Ferrell, JR
   Cugini, AV
   Smotkin, ES
   Salazar-Villalpando, MD
AF Ogura, Kotaro
   Ferrell, Jack R., III
   Cugini, Anthony V.
   Smotkin, Eugene S.
   Salazar-Villalpando, Maria D.
TI CO2 attraction by specifically adsorbed anions and subsequent
   accelerated electrochemical reduction
SO ELECTROCHIMICA ACTA
LA English
DT Article
DE CO2 electrochemical reduction; Copper electrode; Halide anions; Adsorbed
   anions; Hydrogen evolution
ID AQUEOUS HYDROGENCARBONATE SOLUTION; CARBON-DIOXIDE; ELECTROLYTIC
   REDUCTION; FORMIC-ACID; 3-PHASE INTERFACE; MERCURY-ELECTRODE; COPPER
   ELECTRODE; METHANOL; ETHYLENE; CATHODES
AB The electrochemical reduction of CO2 was studied on a copper mesh electrode in aqueous solutions containing 3M solutions of KCl, KBr and KI as the electrolytes in a two and three phase configurations. Electrochemical experiments were carried out in a laboratory-made, divided H-type cell. The working electrode was a copper mesh, while the counter and reference electrodes were Pt wire and Ag/AgCl electrode, respectively. Results of our work suggest a reaction mechanism for the electrochemical reduction of CO2 in the two phase configuration where the presence of Cu-X as the catalytic layer facilitates the electron transfer from the electrode to CO2. Electron-transfer to CO2 may occur via the X-ad(-)(Br-. Cl-, I-)-C bond, which is formed by the electron flow from the specifically adsorbed halide anion to the vacant orbital of CO2. The stronger the adsorption of the halide anion to the electrode, the more strongly CO2 is restrained, resulting in higher CO2 reduction current. Furthermore, it is suggested that specifically adsorbed halide anions could suppress the adsorption of protons, leading to a higher hydrogen overvoltage. These effects may synergistically mitigate the overpotential necessary for CO2 reduction, and thus increase the rate of electrochemical CO2 reduction. Published by Elsevier Ltd.
C1 [Cugini, Anthony V.; Salazar-Villalpando, Maria D.] US DOE, Natl Energy Technol Lab, Morgantown, WV 26507 USA.
   [Ferrell, Jack R., III; Smotkin, Eugene S.] Oak Ridge Inst Sci & Educ, Oak Ridge, TN 37831 USA.
RP Salazar-Villalpando, MD (reprint author), US DOE, Natl Energy Technol Lab, Morgantown, WV 26507 USA.
EM Maria.salazar@netl.doe.gov
NR 34
TC 13
Z9 13
U1 6
U2 56
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0013-4686
EI 1873-3859
J9 ELECTROCHIM ACTA
JI Electrochim. Acta
PD DEC 15
PY 2010
VL 56
IS 1
BP 381
EP 386
DI 10.1016/j.electacta.2010.08.065
PG 6
WC Electrochemistry
SC Electrochemistry
GA 692TK
UT WOS:000285177800052
ER

PT J
AU Beliveau, A
   Mott, JD
   Lo, A
   Chen, EI
   Koller, AA
   Yaswen, P
   Muschler, J
   Bissell, MJ
AF Beliveau, Alain
   Mott, Joni D.
   Lo, Alvin
   Chen, Emily I.
   Koller, Antonius A.
   Yaswen, Paul
   Muschler, John
   Bissell, Mina J.
TI Raf-induced MMP9 disrupts tissue architecture of human breast cells in
   three-dimensional culture and is necessary for tumor growth in vivo
SO GENES & DEVELOPMENT
LA English
DT Article
DE Breast cancer cells; MAPK; matrix metalloproteinase9 (MMP9); tissue
   architecture; three-dimensional (3D) culture models
ID MATRIX-METALLOPROTEINASE INHIBITORS; EPITHELIAL-CELLS;
   BASEMENT-MEMBRANE; EXTRACELLULAR-MATRIX; SIGNALING PATHWAYS;
   GENE-EXPRESSION; FUNCTIONAL-DIFFERENTIATION; TRANSCRIPTIONAL ENHANCER;
   PROTEIN-KINASE; CANCER-THERAPY
AB Organization into polarized three-dimensional structures defines whether epithelial cells are normal or malignant. In a model of morphogenesis, we show that inhibiting key signaling pathways in human breast cancer cells leads to "phenotypic reversion'' of the malignant cells. Using architecture as an endpoint, we report that, in all cases, signaling through Raf/MEK/ERK disrupted tissue polarity via matrix metalloproteinase9 (MMP9) activity. Induction of Raf or activation of an engineered, functionally inducible MMP9 in nonmalignant cells led to loss of tissue polarity, and reinitiated proliferation. Conversely, inhibition of Raf or MMP9 with small molecule inhibitors or shRNAs restored the ability of cancer cells to form polarized quiescent structures. Silencing MMP9 expression also reduced tumor growth dramatically in a murine xenograft model. LC-MS/MS analysis comparing conditioned medium from nonmalignant cells with or without active MMP9 revealed laminin 111 (LM1) as an important target of MMP9. LM1 has been implicated in acinar morphogenesis; thus, its degradation by MMP9 provides a mechanism for loss of tissue polarity and reinitiation of growth associated with MMP9 activity. These findings underscore the importance of the dynamic reciprocity between the extracellular matrix integrity, tissue polarity, and Raf/MEK/ERK and MMP9 activities, providing an axis for either tissue homeostasis or malignant progression.
C1 [Beliveau, Alain; Mott, Joni D.; Lo, Alvin; Yaswen, Paul; Bissell, Mina J.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Life Sci, Berkeley, CA 94720 USA.
   [Chen, Emily I.] SUNY Stony Brook, Dept Pharmacol Sci, Stony Brook, NY 11794 USA.
   [Koller, Antonius A.] SUNY Stony Brook, Prote Ctr, Stony Brook, NY 11794 USA.
   [Koller, Antonius A.] SUNY Stony Brook, Dept Pathol, Sch Med, Stony Brook, NY 11794 USA.
   [Muschler, John] Calif Pacific Med Ctr, Res Inst, San Francisco, CA 94107 USA.
RP Beliveau, A (reprint author), CHUM, Res Ctr, 1560 Sherbrooke E, Montreal, PQ H2L 4M1, Canada.
EM alain.beliveau.chum@ssss.gouv.qc.ca; MJBissell@lbl.gov
FU Office of the Biological and Environmental Research of the US Department
   of Energy (US-DOE) [DE-AC02-05CH11231]; Office of Health and
   Environmental Research, Health Effects Division, US-DOE [03-76SF00098];
   Department of Defense (US-DOD) [W81XWH0810736]; National Cancer
   Institute (NCI) [R37CA064786, U54CA126552, R01CA057621, U54CA112970,
   U54CA143836, U01CA143233, R01CA088858, R01CA109579]; Susan Komen
   Catalyst Research Grant; NIH/NCRR [1 S10 RR023680-1]; Fonds pour la
   Formation de Chercheurs et l'Aide a la Recherche; Canadian Institutes of
   Health Research
FX We thank Tarlochan Niijar for the pSUPER-RETRO-GFP, Eric Campeau for the
   MEK1-2 shRNA design, Lynn Weir for technical help, and Paraic Kenny,
   Roland Meier, Cyrus Ghajar, and Irene Kuhn for helpful comments. This
   work was supported by a Distinguished Fellow Award and grants from the
   Office of the Biological and Environmental Research of the US Department
   of Energy (US-DOE; DE-AC02-05CH11231), Low-Dose Radiation Program of the
   Office of Health and Environmental Research, Health Effects Division,
   US-DOE (03-76SF00098), an Innovator award from BCRP of the Department of
   Defense (US-DOD; W81XWH0810736), and the National Cancer Institute (NCI;
   awards R37CA064786, U54CA126552, R01CA057621, U54CA112970, U54CA143836,
   and U01CA143233). E. I. C. was supported by a Susan Komen Catalyst
   Research Grant and the shared instrument grant (NIH/NCRR 1 S10
   RR023680-1). A. B. was the recipient of fellowships from "Fonds pour la
   Formation de Chercheurs et l'Aide a la Recherche'' and the Canadian
   Institutes of Health Research. J.D.M. was supported by R01CA088858 from
   NCI, and J.M. was supported by R01CA109579 from NCI.
NR 62
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U1 0
U2 8
PU COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT
PI COLD SPRING HARBOR
PA 1 BUNGTOWN RD, COLD SPRING HARBOR, NY 11724 USA
SN 0890-9369
J9 GENE DEV
JI Genes Dev.
PD DEC 15
PY 2010
VL 24
IS 24
BP 2800
EP 2811
DI 10.1101/gad.1990410
PG 12
WC Cell Biology; Developmental Biology; Genetics & Heredity
SC Cell Biology; Developmental Biology; Genetics & Heredity
GA 694WO
UT WOS:000285331800012
PM 21159820
ER

PT J
AU Fenter, P
   Lee, SS
   Park, C
   Soderholm, L
   Wilson, RE
   Schwindt, O
AF Fenter, P.
   Lee, S. S.
   Park, C.
   Soderholm, L.
   Wilson, R. E.
   Schwindt, O.
TI Interaction of muscovite (0 0 1) with Pu3+ bearing solutions at pH 3
   through ex-situ observations
SO GEOCHIMICA ET COSMOCHIMICA ACTA
LA English
DT Article
ID X-RAY REFLECTIVITY; FULVIC-ACID; (001)-SOLUTION INTERFACE; ABSORPTION
   SPECTRA; SURFACE-STRUCTURE; PLUTONIUM IONS; STANDING-WAVE; ADSORPTION;
   SORPTION; CALCITE
AB The interaction of Pu3+ bearing solutions with the muscovite (0 0 1) basal plane is explored using a combination of ex-situ approaches including alpha-counting, to determine the Pu3+ adsorption isotherm, and X-ray reflectivity (XR) and resonant anomalous X-ray reflectivity (RAXR), to probe the interfacial structure and Pu-specific distribution, respectively. Pu uptake to the muscovite (0 0 1) surface from Pu3+ solutions in a 0.1 M NaClO4 background electrolyte at pH 3 follows an approximate Langmuir isotherm with an apparent adsorption constant, K-app = 5 x 10(4) M-1, and with a maximum coverage that is consistent with the amount needed to fully compensate the surface charge by trivalent Pu. The XR results show that the muscovite surface reacted with a 10(-3) M Pu3+ solution (at pH 3 with 0.1 M NaClO4) and dried in the ambient environment, maintains a 30-40 angstrom thick layer, indicating the presence of a residual hydration layer (possibly including adventitious carbon). The RAXR results indicate that Pu sorbs on the muscovite surface with an intrinsically broad distribution with an average height of 18 angstrom, substantially larger than heights expected for any specifically adsorbed inner- or outer-sphere complexes. These results are discussed in the context of recent studies of cation adsorption trends on muscovite and the possible roles of Pu hydrolysis species in controlling the Pu-muscovite interactions. (C) 2010 Elsevier Ltd. All rights reserved.
C1 [Fenter, P.; Lee, S. S.; Park, C.; Soderholm, L.; Wilson, R. E.] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Schwindt, O.] Karlsruhe Inst Technol, Inst Nucl Waste Disposal, Karlsruhe, Germany.
RP Fenter, P (reprint author), Argonne Natl Lab, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM fenter@anl.gov
RI Wilson, Richard/H-1763-2011; Lee, Sang Soo/B-9046-2012; Park,
   Changyong/A-8544-2008
OI Wilson, Richard/0000-0001-8618-5680; Park, Changyong/0000-0002-3363-5788
FU United States Department of Energy [DE-AC02-06CH11357]; United States
   Department of Energy Office of Science, Office of Biological and
   Environmental Research; U.S. DOE, Office of Science, Office of Basic
   Energy Sciences [DE-AC02-06CH11357]
FX This work was conducted at Argonne National Laboratory, operated by
   UChicago Argonne LLC for the United States Department of Energy under
   Contract No. DE-AC02-06CH11357, and under support from the United States
   Department of Energy Office of Science, Office of Biological and
   Environmental Research. The X-ray reflectivity and resonant scattering
   data were collected at the X-ray Operations and Research beamline 6-ID-B
   at the Advanced Photon Source (APS), Argonne National Laboratory. Use of
   the APS was supported by the U.S. DOE, Office of Science, Office of
   Basic Energy Sciences, under Contract No. DE-AC02-06CH11357.
NR 55
TC 10
Z9 10
U1 0
U2 25
PU PERGAMON-ELSEVIER SCIENCE LTD
PI OXFORD
PA THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND
SN 0016-7037
J9 GEOCHIM COSMOCHIM AC
JI Geochim. Cosmochim. Acta
PD DEC 15
PY 2010
VL 74
IS 24
BP 6984
EP 6995
DI 10.1016/j.gca.2010.09.025
PG 12
WC Geochemistry & Geophysics
SC Geochemistry & Geophysics
GA 691JR
UT WOS:000285076600003
ER

PT J
AU Boyle, TJ
   Ottley, LAM
AF Boyle, Timothy J.
   Ottley, Leigh Anna M.
TI Structural characterization of the coordination behavior of 4,4
   '-di-methoxy,2,2 '-di-ol-benzophenone modified metal alkoxides
SO INORGANICA CHIMICA ACTA
LA English
DT Article
DE Metal alkoxide; Benzophenone; Group 4, 5, and 6; Coordination compounds
ID X-RAY STRUCTURES; NEO-PENTOXIDE; CERIUM(III) ALKOXIDES; INORGANIC
   MATERIALS; CRYSTAL-STRUCTURE; SOLID-STATE; THIN-FILMS; GROUP-IV;
   COMPLEXES; PRECURSORS
AB For the first time, the coordination behavior of the 4,4'-di-methoxy,2,2'-di-ol-benzophenone (H-2-OBzP) ligand with a series of early transition metal alkoxides (Group 4, 5, and 6) was determined to adopt either the 'bridging, chelating bridging' (mu,mu(c)-OBzP) or the 'bichelating bridging' (mu(c2)-OBzP) arrangement. The main products were found to be dimeric with pseudo-octahedral (O-h) bound metal centers. The mu,mu(c)-OBzP mode was noted for the larger cations (Hf, Nb, and Ta) and the solvated smallest (Ti/py) whereas the mu(c2)-OBzP coordination was observed for the larger Group 4 metal congeners: [(py)(OPrl)(2)Ti(mu,mu(c)-OBzP)](2) (1), '{[(OBut)(2)Ti(mu-OBut)](2)(mu(c2)-OBzP)}(n)' (2), [(ONep)(2)Ti(mu-ONep)](2)(mu(c2)-OBzP) (3), [(OBut)(2)Zr(mu-OBut)](2)(mu(c2)-OBzP) (4), [(MeIm)2(ONep)(2)Zr(mu,mu(c)-OBzP)](2) (5), [(ONep)(2)Zr(mu(c2)-OBzP)(mu-ONep)(mu(3)-O)Zr(ONep)](2) (5a), [(OBut)(2)Hf(mu(c2)-OBzP)](2) (6), '{[(ONep)(2)Hf(mu,mu(c)-OBzP)](2)center dot py} n' (7), '{[(OEt)(3)Nb(mu,mu(c)-OBzP)](2)}(n)' (8), [(ONep)(3)Nb(mu,mu(c)-OBzP)](2) (9), [(OEt)(3)Ta(mu,mu(c)-OBzP)](2) (10), [(ONep)(3)Ta(mu,mu(c)-OBzP)](2) (11), and [(OEt)(2)(O)W(mu,mu(c)-OBzP)](2) (12), [(ONep)(2)W(O)(mu,mu(c)-OBzp)](2) (13), [(py)(O)(2)W(mu,mu(c)-OBzP)](2) (13a), and [(Me2Al(mu,(2)mu(c)-OBzP)Al(py)(2)] (14) where Me = CH3, OEt = OCH2CH3, OPri = OCHMe2, OBut = OCMe3, ONep = OCH2CMe3, py = pyridine, MeIm = 1-methyl imidazole, and (2)mu(c)-refers to the chelation occurs on the same metal. Compounds 2, 7, and 8 are represented by quotation marks since they could not be crystallographically characterized, however, their structural arrangements were deduced from the FTIR spectroscopic data. The coordination mode of the OBzP ligand for 1-13 appears to be driven by the need to fill the O-h geometry, which is achieved by either binding solvent molecules or additional bridging ligands, dictated by the charge and size of the cations employed. The metal alkyl alkoxide compound 14 employs a unique mu,(2)mu(c)-OBzP mode, yielding a +2/+4 charge separated molecular Al complex. Published by Elsevier B.V.
C1 [Boyle, Timothy J.; Ottley, Leigh Anna M.] Sandia Natl Labs, Adv Mat Lab, Albuquerque, NM 87106 USA.
RP Boyle, TJ (reprint author), Sandia Natl Labs, Adv Mat Lab, 1001 Univ Blvd SE, Albuquerque, NM 87106 USA.
EM tjboyle@Sandia.gov
FU Department of Energy, Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering; US Department of Energy's National
   Nuclear Security Administration [DE-AC04-94AL85000]
FX Support for this research supplied by the Department of Energy, Office
   of Basic Energy Sciences, Division of Materials Sciences and
   Engineering. Sandia National Laboratories is a multi-program laboratory
   operated by Sandia Corporation, a wholly owned subsidiary of Lockheed
   Martin company, for the US Department of Energy's National Nuclear
   Security Administration under contract DE-AC04-94AL85000.
NR 47
TC 6
Z9 6
U1 1
U2 9
PU ELSEVIER SCIENCE SA
PI LAUSANNE
PA PO BOX 564, 1001 LAUSANNE, SWITZERLAND
SN 0020-1693
J9 INORG CHIM ACTA
JI Inorg. Chim. Acta
PD DEC 15
PY 2010
VL 364
IS 1
BP 69
EP 80
DI 10.1016/j.ica.2010.08.047
PG 12
WC Chemistry, Inorganic & Nuclear
SC Chemistry
GA 688SJ
UT WOS:000284872800011
ER

PT J
AU Mrutu, A
   Goldberg, KI
   Kemp, RA
AF Mrutu, Agnes
   Goldberg, Karen I.
   Kemp, Richard A.
TI Synthesis and characterization of a dinuclear Ni complex containing a
   bridging CNC pincer ligand
SO INORGANICA CHIMICA ACTA
LA English
DT Article
DE X-ray crystallography; Pincer ligand; Carbene ligands; Dinuclear Ni
   complexes
ID HETEROCYCLIC CARBENES; CATALYTIC-ACTIVITY
AB The reaction of the bis(carbene) pincer ligand (Me)CNC with nickel acetate and Bu(4)NBr produced [((Me)CNC)(3)Ni(2)](4+)[Br](4) (2), a complex that contains the (Me)CNC ligand in both traditional tridentate chelating modes as well as in a unique, bridging mode between two Ni(2+) ions. While 2 could not be crystallized or isolated in a pure form, the anion exchange of bromide with triflate yielded [((Me)CNC)(3)Ni(2)](4+)[OTf](4) (4), which could be recrystallized from methanol and isolated pure. Single-crystal X-ray analysis of 4 confirmed the unusual dual-coordination modes of the (Me)CNC ligand towards Ni(2+) in these species, and represents the initial example of a Group 10 complex of a bridging CNC ligand. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Mrutu, Agnes; Kemp, Richard A.] Univ New Mexico, Dept Chem & Chem Biol, Albuquerque, NM 87131 USA.
   [Goldberg, Karen I.] Univ Washington, Dept Chem, Seattle, WA 98195 USA.
   [Kemp, Richard A.] Sandia Natl Labs, Adv Mat Lab, Albuquerque, NM 87106 USA.
RP Kemp, RA (reprint author), Univ New Mexico, Dept Chem & Chem Biol, Albuquerque, NM 87131 USA.
EM rakemp@unm.edu
FU Department of Energy [DE-FG02-06ER15765]; National Science Foundation
   [CHE-0443580]; United States Department of Energy [DE-AC04-94AL85000]
FX This work was financially supported by the Department of Energy
   (DE-FG02-06ER15765) via a grant to RAK and KIG. The Bruker X-ray
   diffractometer was purchased via a National Science Foundation CRIF:MU
   award to the University of New Mexico (CHE-0443580). We thank Drs. Diane
   Dickie and Eileen Duesler of UNM for assistance with the X-ray data
   analysis. Sandia is a multiprogram laboratory operated by Sandia
   Corporation, a Lockheed Martin Company, for the United States Department
   of Energy under Contract No. DE-AC04-94AL85000.
NR 21
TC 9
Z9 9
U1 0
U2 9
PU ELSEVIER SCIENCE SA
PI LAUSANNE
PA PO BOX 564, 1001 LAUSANNE, SWITZERLAND
SN 0020-1693
J9 INORG CHIM ACTA
JI Inorg. Chim. Acta
PD DEC 15
PY 2010
VL 364
IS 1
BP 115
EP 119
DI 10.1016/j.ica.2010.08.049
PG 5
WC Chemistry, Inorganic & Nuclear
SC Chemistry
GA 688SJ
UT WOS:000284872800016
ER

PT J
AU Chamberlin, S
   Majumdar, N
   Wulff, WD
   Muntean, JV
   Ostrander, RL
   Rheingold, AL
AF Chamberlin, Steven
   Majumdar, Nilanjana
   Wulff, William D.
   Muntean, John V.
   Ostrander, Robert L.
   Rheingold, Arnold L.
TI Origin of the regioselectivity in an intramolecular nucleophilic
   addition to arene chromium tricarbonyl complexes
SO INORGANICA CHIMICA ACTA
LA English
DT Article
DE Arene chromium tricarbonyl; Aromatic nucleophilic addition; X-ray
   diffraction; Solid-state C-13 NMR spectroscopy; Solution C-13 NMR
   spectroscopy; Regioselectivity
ID FISCHER CARBENE COMPLEXES; CARBON NUCLEOPHILES; ORGANIC-SYNTHESIS;
   (ARENE)TRICARBONYLCHROMIUM COMPLEXES; BENZANNULATION REACTION; CARBANION
   ATTACK; NMR-SPECTROSCOPY; REACTIVITY; METAL; SUBSTITUTION
AB The source of the regioselectivity in the intramolecular nucleophilic addition of nitrile-stabilized carbanions to arene chromium tricarbonyl complexes was investigated for seven different substitution patterns on the arenes. All of the arenes are 1,4-dioxygenated and the substitution varies in the oxygen substituent and in the substituents of the arene carbons (hydrogen and alkyl). The regioselectivity is correlated with the preferred conformations of the chromium tricarbonyl group which in turn was determined by solution and solid-state C-13 NMR spectroscopy, H-1 NMR spectroscopy in solution as well as X-ray diffraction. In the four complexes analyzed by X-ray diffraction and the three complexes analyzed by solid-state C-13 NMR spectroscopy, there was only one complex where it was found that the preferred conformation of the -Cr(CO)(3) is different in solution than it is in the solid-state. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Majumdar, Nilanjana; Wulff, William D.] Michigan State Univ, Dept Chem, E Lansing, MI 48824 USA.
   [Chamberlin, Steven] Abbott Labs, Abbott Pk, IL 60064 USA.
   [Muntean, John V.] Argonne Natl Lab, Chem Sci & Engn Div, Argonne, IL 60439 USA.
   [Ostrander, Robert L.; Rheingold, Arnold L.] Univ Calif San Diego, Dept Chem, La Jolla, CA 92093 USA.
RP Wulff, WD (reprint author), Michigan State Univ, Dept Chem, E Lansing, MI 48824 USA.
EM wulff@chemistry.msu.edu
FU National Science Foundation [CHE-0750319]
FX This work was supported by a Grant from the National Science Foundation
   (CHE-0750319).
NR 57
TC 5
Z9 5
U1 0
U2 12
PU ELSEVIER SCIENCE SA
PI LAUSANNE
PA PO BOX 564, 1001 LAUSANNE, SWITZERLAND
SN 0020-1693
J9 INORG CHIM ACTA
JI Inorg. Chim. Acta
PD DEC 15
PY 2010
VL 364
IS 1
BP 205
EP 219
DI 10.1016/j.ica.2010.07.037
PG 15
WC Chemistry, Inorganic & Nuclear
SC Chemistry
GA 688SJ
UT WOS:000284872800030
ER

PT J
AU Erat, S
   Braun, A
   Piamonteze, C
   Liu, Z
   Ovalle, A
   Schindler, H
   Graule, T
   Gauckler, LJ
AF Erat, Selma
   Braun, Artur
   Piamonteze, Cinthia
   Liu, Zhi
   Ovalle, Alejandro
   Schindler, Hansjuergen
   Graule, Thomas
   Gauckler, Ludwig J.
TI Entanglement of charge transfer, hole doping, exchange interaction, and
   octahedron tilting angle and their influence on the conductivity of
   La1-xSrxFe0.75Ni0.25O3-delta: A combination of x-ray spectroscopy and
   diffraction
SO JOURNAL OF APPLIED PHYSICS
LA English
DT Article
ID ABSORPTION-SPECTROSCOPY; TRANSPORT-PROPERTIES; PHYSICAL-PROPERTIES;
   PHASE-TRANSITION; CATHODE MATERIAL; PEROVSKITES; LA1-XSRXFEO3;
   MANGANITES; REFINEMENT; BEHAVIOR
AB Substitution of La by Sr in the 25% Ni doped charge transfer insulator LaFeO3 leads to structural changes that inflect the electrical conductivity, which is caused by small polaron hopping via charge transfer and exchange interactions. The substitution forms electron holes and causes a structural transition from orthorhombic to rhombohedral symmetry, and then to cubic symmetry. The structural crossover is accompanied by a crossover from the Fe3+-O2--Fe3+ superexchange interaction to the Fe3+-O2--Fe4+ double exchange interaction in the course of substitution, as evidenced by a considerable increase in the conductivity at ambient temperature. The charge transfer and exchange interactions depend on the superexchange angle, which approaches 180 degrees upon increasing Sr concentration. An increase in superexchange angle leads to an increase in overlapping between the O 2p and the Fe/Ni 3d orbitals. (C) 2010 American Institute of Physics. [doi:10.1063/1.3517822]
C1 [Erat, Selma; Braun, Artur; Ovalle, Alejandro; Schindler, Hansjuergen; Graule, Thomas] Empa Swiss Fed Labs Mat Sci & Technol, Lab High Performance Ceram, CH-8600 Dubendorf, Switzerland.
   [Erat, Selma; Gauckler, Ludwig J.] ETH, Dept Mat, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland.
   [Piamonteze, Cinthia] Paul Scherrer Inst, Swiss Light Source, CH-5232 Villigen, Switzerland.
   [Liu, Zhi] Ernest Orlando Lawrence Berkeley Natl Lab, Adv Light Source, Berkeley, CA 94720 USA.
   [Graule, Thomas] Tech Univ Bergakad Freiberg, D-09596 Freiberg, Germany.
RP Erat, S (reprint author), Empa Swiss Fed Labs Mat Sci & Technol, Lab High Performance Ceram, CH-8600 Dubendorf, Switzerland.
EM selmaerat33@gmail.com; artur.braun@alumni.ethz.ch
RI Gauckler, Ludwig/C-2784-2009; Liu, Zhi/B-3642-2009; Piamonteze,
   Cinthia/E-9740-2016; BRAUN, Artur/A-1154-2009
OI Gauckler, Ludwig/0000-0003-4668-4025; Liu, Zhi/0000-0002-8973-6561;
   BRAUN, Artur/0000-0002-6992-7774
FU European Commission [CT-2006-042095]; Real-SOFC [SES6-CT-2003-502612];
   Swiss National Science Foundation (SNF) [200021-116688]; Office of
   Science, Office of Basic Energy Sciences, of the U.S. Department of
   Energy [DE-AC02-05CH11231]
FX Financial support by the European Commission (MIRG Grant No.
   CT-2006-042095 and Real-SOFC Grant No. SES6-CT-2003-502612) and the
   Swiss National Science Foundation (SNF Grant No. 200021-116688) are
   acknowledged. The ALS is supported by the Director, Office of Science,
   Office of Basic Energy Sciences, of the U.S. Department of Energy under
   Contract No. DE-AC02-05CH11231. The authors would like to thank to Dr.
   Lynne McCusker from ETH-Zurich for helpful discussions on
   crystallographic structure results.
NR 39
TC 4
Z9 4
U1 0
U2 13
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0021-8979
J9 J APPL PHYS
JI J. Appl. Phys.
PD DEC 15
PY 2010
VL 108
IS 12
AR 124906
DI 10.1063/1.3517822
PG 8
WC Physics, Applied
SC Physics
GA 700UC
UT WOS:000285768800136
ER

PT J
AU Horwat, D
   Anders, A
AF Horwat, David
   Anders, Andre
TI Compression and strong rarefaction in high power impulse magnetron
   sputtering discharges
SO JOURNAL OF APPLIED PHYSICS
LA English
DT Article
ID GAS RAREFACTION; DEPOSITION; SIMULATION; SYSTEM
AB Gas compression and strong rarefaction have been observed for high power impulse magnetron sputtering (HIPIMS) discharges using a copper target in argon. Time-resolved ion saturation currents of 35 probes were simultaneously recorded for HIPIMS discharges operating far above the self-sputtering runaway threshold. The argon background pressure was a parameter for the evaluation of the spatial and temporal development of the plasma density distribution. The data can be interpreted by a massive onset of the sputtering flux (sputter wind) that causes a transient densification of the gas, followed by rarefaction and the replacement of gas plasma by the metal plasma of sustained self-sputtering. The plasma density pulse follows closely the power pulse at low pressure. At high pressure, the relatively remote probes recorded a density peak only after the discharge pulse, indicative for slow, diffusive ion transport. (c) 2010 American Institute of Physics. [doi: 10.1063/1.3525986]
C1 [Horwat, David] Nancy Univ UPV Metz, Ecole Mines Nancy, Inst Jean Lamour, CNRS,UMR 7198,Dept CP2S, F-54042 Nancy, France.
   [Anders, Andre] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
RP Horwat, D (reprint author), Nancy Univ UPV Metz, Ecole Mines Nancy, Inst Jean Lamour, CNRS,UMR 7198,Dept CP2S, Parc Saurupt,CS14234, F-54042 Nancy, France.
EM aanders@lbl.gov
RI Horwat, David/I-8740-2012; Anders, Andre/B-8580-2009; 
OI Anders, Andre/0000-0002-5313-6505; Horwat, David/0000-0001-7938-7647
FU European Commission; Office of Building Technology, of the U.S.
   Department of Energy [DE-AC02-05CH11231]
FX We thank the Inertial Fusion Group of Berkeley Laboratory for letting us
   use the multichannel data acquisition system. We gratefully acknowledge
   the "France Berkeley Fund" for financial support of this collaboration.
   A.A. acknowledges support by the Erasmus Mundus Scholarship of the
   European Commission and by the Assistant Secretary for Energy Efficiency
   and Renewable Energy, Office of Building Technology, of the U.S.
   Department of Energy under Contract No. DE-AC02-05CH11231.
NR 31
TC 36
Z9 36
U1 1
U2 19
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0021-8979
J9 J APPL PHYS
JI J. Appl. Phys.
PD DEC 15
PY 2010
VL 108
IS 12
AR 123306
DI 10.1063/1.3525986
PG 6
WC Physics, Applied
SC Physics
GA 700UC
UT WOS:000285768800020
ER

PT J
AU Shen, X
   Oxley, MP
   Puzyrev, Y
   Tuttle, BR
   Duscher, G
   Pantelides, ST
AF Shen, X.
   Oxley, M. P.
   Puzyrev, Y.
   Tuttle, B. R.
   Duscher, G.
   Pantelides, S. T.
TI Excess carbon in silicon carbide
SO JOURNAL OF APPLIED PHYSICS
LA English
DT Article
ID THIN-FILM OXIDATION; SIC/SIO2 INTERFACES; DEFECTS; PRECIPITATION;
   DEVICES; STATES; SIO2
AB The application of SiC in electronic devices is currently hindered by low carrier mobility at the SiC/SiO2 interfaces. Recently, it was reported that 4H-SiC/SiO2 interfaces might have a transition layer on the SiC substrate side with C/Si ratio as high as 1.2, suggesting that carbon is injected into the SiC substrate during oxidation or other processing steps. We report finite-temperature quantum molecular dynamics simulations that explore the behavior of excess carbon in SiC. For SiC with 20% excess carbon, we find that, over short time (similar to 24 ps), carbon atoms bond to each other and form various complexes, while the silicon lattice is largely unperturbed. These results, however, suggest that at macroscopic times scale, C segregation is likely to occur; therefore a transition layer with 20% extra carbon would not be stable. For a dilute distribution of excess carbon, we explore the pairing of carbon interstitials and show that the formation of dicarbon interstitial cluster is kinetically very favorable, which suggests that isolated carbon clusters may exist inside SiC substrate. (C) 2010 American Institute of Physics. [doi: 10.1063/1.3517142]
C1 [Shen, X.; Oxley, M. P.; Puzyrev, Y.; Pantelides, S. T.] Vanderbilt Univ, Dept Phys & Astron, Nashville, TN 37235 USA.
   [Oxley, M. P.; Pantelides, S. T.] Oak Ridge Natl Lab, Oak Ridge, TN 37831 USA.
   [Tuttle, B. R.] Penn State Behrend, Dept Phys, Erie, PA 16563 USA.
   [Duscher, G.] Univ Tennessee, Dept Mat Sci & Engn, Knoxville, TN 37996 USA.
RP Shen, X (reprint author), Vanderbilt Univ, Dept Phys & Astron, Nashville, TN 37235 USA.
EM xiao.shen@vanderbilt.edu
RI Duscher, Gerd/G-1730-2014
OI Duscher, Gerd/0000-0002-2039-548X
FU NSF GOALI [DMR-0907385]; DOE [DE-FG02-09ER46554]; Vanderbilt University;
   National Science Foundation [TG-DMR100012, TG-DMR100022]
FX This work is supported in part by NSF GOALI under Grant No. DMR-0907385,
   by DOE under Grant No. DE-FG02-09ER46554, and by the McMinn Endowment at
   Vanderbilt University. The computational resources are provided by the
   National Science Foundation through TeraGrid resources under Grant Nos.
   TG-DMR100012 and TG-DMR100022.
NR 30
TC 20
Z9 20
U1 1
U2 18
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0021-8979
J9 J APPL PHYS
JI J. Appl. Phys.
PD DEC 15
PY 2010
VL 108
IS 12
AR 123705
DI 10.1063/1.3517142
PG 5
WC Physics, Applied
SC Physics
GA 700UC
UT WOS:000285768800051
ER

PT J
AU Hong, S
   Karim, A
   Rahman, TS
   Jacobi, K
   Ertl, G
AF Hong, Sampyo
   Karim, Altaf
   Rahman, Talat S.
   Jacobi, Karl
   Ertl, Gerhard
TI Selective oxidation of ammonia on RuO2(110) A combined DFT and KMC study
SO JOURNAL OF CATALYSIS
LA English
DT Article
DE Ruthenium; Oxide; Ammonia; Oxidation; Kinetic Monte Carlo; Density
   functional theory; Catalysis; Selectivity
ID ROOM-TEMPERATURE; CO OXIDATION; SURFACE; MECHANISM; PRESSURE; KINETICS;
   POINTS
AB We have used a combination of density functional theory (OFT) and kinetic Monte Carlo (KMC) simulations to calculate the reaction rates for the selective oxidation of ammonia on RuO2(1 1 0) Our KMC simulations of 18 reactions among NHx(x-0-3) and OHx(x-0-2) species on RuO2(1 1 0) show 93% selectivity for NO in close agreement with experiment (similar to 95%) The chief factor in the high selectivity for NO on the RuO2(1 1 0) surface is the significantly reduced N diffusion (via N blocking) caused by various intermediates present on the RuO2(1 1 0) surface which severely inhibits the recombination rate of N + N -> N-2 but interfere far less with that of N + O -> NO owing to the nearby availability of O from dissociation of O-2 (C) 2010 Elsevier Inc All rights reserved
C1 [Hong, Sampyo; Rahman, Talat S.] Univ Cent Florida, Dept Phys, Orlando, FL 32816 USA.
   [Karim, Altaf] Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA.
   [Jacobi, Karl; Ertl, Gerhard] Max Planck Gesell, Fritz Haber Inst, Dept Phys Chem, D-14195 Berlin, Germany.
RP Rahman, TS (reprint author), Univ Cent Florida, Dept Phys, Orlando, FL 32816 USA.
FU DOE [DE-FG02-aa07ER15842]
FX The work is supported by DOE under Grant No DE-FG02-aa07ER15842 We
   acknowledge fruitful discussions with S Stolbov We are grateful to Lyman
   Baker for careful reading of the manuscript and constructive comments
NR 29
TC 30
Z9 30
U1 4
U2 44
PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0021-9517
EI 1090-2694
J9 J CATAL
JI J. Catal.
PD DEC 15
PY 2010
VL 276
IS 2
BP 371
EP 381
DI 10.1016/j.jcat.2010.09.029
PG 11
WC Chemistry, Physical; Engineering, Chemical
SC Chemistry; Engineering
GA 694TV
UT WOS:000285322800017
ER

PT J
AU Yeager, JD
   Dattelbaum, AM
   Orler, EB
   Bahr, DF
   Dattelbaum, DM
AF Yeager, J. D.
   Dattelbaum, A. M.
   Orler, E. B.
   Bahr, D. F.
   Dattelbaum, D. M.
TI Adhesive properties of some fluoropolymer binders with the insensitive
   explosive 1,3,5-triamino-2,4,6-trinitrobenzene (TATB)
SO JOURNAL OF COLLOID AND INTERFACE SCIENCE
LA English
DT Article
DE Surface energy; Adhesion; Glass transition temperature; Fluoropolymers;
   TATB; Plastic bonded explosive
ID SURFACE FREE-ENERGY; POLYMER BONDED EXPLOSIVES; DEFORMATION; FAILURE;
   GROWTH; COPOLYMERS; BEHAVIOR; TENSIONS
AB Adhesion between binders and explosive crystals is of critical importance for the mechanical performance of plastic-bonded explosives (PBXs) The surface properties of several prospective binders have been determined from static advancing contact angle measurements The surface energies have been used to calculate theoretical work of adhesion to 1 3 5-triamino 24 6-trinitrobenzene (TATB) a common insensitive high explosive The fluorinated terpolymer Oxy461 (TM) and Kel F (TM) chlorotrifluoroethylene-vinylidene fluoride copolymers show the greatest potential for wetting TATB surfaces and should promote the best adhesion to TATB in PBX formulations In general none of the fluoropolymer binders investigated here exhibit markedly superior adhesion to TATB Thus bulk physical properties are likely to be more Important when choosing a binder (C) 2010 Elsevier Inc All rights reserved
C1 Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Bahr, D. F.] Washington State Univ, Pullman, WA 99164 USA.
RI Bahr, David/A-6521-2012; 
OI Bahr, David/0000-0003-2893-967X; Yeager, John/0000-0002-3121-6053
FU DOE/NNSA
FX Los Alamos National Laboratory is operated by LANS LLC for the
   Department of Energy Funding for this work was provided by DOE/NNSA
   Campaign 2 We thank the Center for Integrated Nanotechnologies for
   providing facilities to perform part of this work J Y acknowledges
   support from D Hooks (LANL) We are grateful to A P Manzara of 3 M Inc
   for polymer samples and insightful discussions and M Cates (Pantex) for
   the Oxy 461 material We also acknowledge E Hartline and E Francois of
   LANL for the SEM micrograph
NR 38
TC 13
Z9 15
U1 3
U2 20
PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0021-9797
J9 J COLLOID INTERF SCI
JI J. Colloid Interface Sci.
PD DEC 15
PY 2010
VL 352
IS 2
BP 535
EP 541
DI 10.1016/j.jcis.2010.08.063
PG 7
WC Chemistry, Physical
SC Chemistry
GA 679SC
UT WOS:000284180100044
PM 20875644
ER

PT J
AU Rawls, MT
   Johnson, J
   Gregg, BA
AF Rawls, Matthew T.
   Johnson, Justin
   Gregg, Brian A.
TI Coupling one electron photoprocesses to multielectron catalysts Towards
   a photoelectrocatalytic system
SO JOURNAL OF ELECTROANALYTICAL CHEMISTRY
LA English
DT Article
DE Energy conversion; Redox chemistry; Molecular devices; Photooxidation;
   Synthesis design
ID CRYSTAL PERYLENE DIIMIDE; FUNCTIONALIZED TERPYRIDYL LIGANDS; WATER
   OXIDATION; PHOTOSYSTEM-II; SUPRAMOLECULAR ARCHITECTURES; PHOTOINDUCED
   PROCESSES; BUILDING-BLOCKS; SOLAR-ENERGY; COMPLEXES; RUTHENIUM
AB We investigate a new approach to artificial photosynthetic systems that couples a one-electron organic photovoltaic material to a two-electron catalyst This approach allows direct photo-production of fuels without requiring sacrificial reagents The synthesis and characterization of the first such photoelectro catalytic (PECat) system is described A series of perylene diimides with appended polypyridyl ligands are synthesized One compound is complexed to a ruthenium terpyridine catalyst Illumination in dimethyl formamide solution results in the formation of the perylene diimide anion and irreversible oxidation of the solvent (or residual impurities) In the solid state the PECat material is electroactive at both semicon ductor and catalyst sites throughout the film The films electrocatalyze the two-electron oxidation of isopropanol to acetone in the dark A small PECat effect is observed in the solid films (C) 2010 Elsevier B V All rights reserved
C1 [Rawls, Matthew T.; Johnson, Justin; Gregg, Brian A.] Natl Renewable Energy Lab, Golden, CO USA.
RP Gregg, BA (reprint author), Natl Renewable Energy Lab, 1617 Cole Blvd, Golden, CO USA.
FU Division of Chemical Sciences Geosciences and Biosciences Office of
   Basic Energy Sciences of the US Department of Energy
   [DE-AC36-08GO28308]; NREL
FX This work was funded by the Division of Chemical Sciences Geosciences
   and Biosciences Office of Basic Energy Sciences of the US Department of
   Energy through Contract No DE-AC36-08GO28308 to NREL and by a grant from
   NREL s Laboratory Directed Research and Development Program
NR 60
TC 4
Z9 4
U1 0
U2 12
PU ELSEVIER SCIENCE SA
PI LAUSANNE
PA PO BOX 564, 1001 LAUSANNE, SWITZERLAND
SN 1572-6657
J9 J ELECTROANAL CHEM
JI J. Electroanal. Chem.
PD DEC 15
PY 2010
VL 650
IS 1
BP 10
EP 15
DI 10.1016/j.jelechem.2010.09.016
PG 6
WC Chemistry, Analytical; Electrochemistry
SC Chemistry; Electrochemistry
GA 692RT
UT WOS:000285173500002
ER

PT J
AU Aston, JE
   Apel, WA
   Lee, BD
   Peyton, BM
AF Aston, John E.
   Apel, William A.
   Lee, Brady D.
   Peyton, Brent M.
TI Effects of cell condition, pH, and temperature on lead, zinc, and copper
   sorption to Acidithiobacillus caldus strain BC13
SO JOURNAL OF HAZARDOUS MATERIALS
LA English
DT Article
DE Remediation; Biomining; Sorption; Metals; Acidithiobacillus
ID BAGASSE FLY-ASH; SUGAR-INDUSTRY WASTE; BIOMASS OEDOGONIUM SP; LOW-COST
   ADSORBENT; AQUEOUS-SOLUTIONS; HEAVY-METALS; THIOBACILLUS-THIOOXIDANS;
   PSEUDOMONAS-PUTIDA; CONTAMINATED SOIL; RED MUD
AB This study describes the effects of cell condition, pH, and temperature on lead, zinc, and copper sorption to Acidithiobacillus caldus strain BC13 with a Langmuir model. Copper exhibited the highest loading capacity, 4.76 +/- 0.28 mmol g(-1), to viable cells at pH 5.5. The highest k(L) (binding-site affinity) observed was 61.2 +/- 3.0 Lmmol(-1) to dehydrated cells at pH 4.0. The pHs that maximized loading capacities and binding-site affinities were generally between 4.0 and 5.5, where the sum of free-proton and complexed-metal concentrations was near a minimum. Of additional importance, lead, zinc, and copper sorbed to viable cells at pH values as low as 1.5. Previous studies with other acidithiobacilli did not measure viable-cell sorption below pH 4.0. In separate experiments. desorption studies showed that far less copper was recovered from viable cells than any other metal or cell condition, suggesting that uptake may play an important role in copper sorption by At. caldus strain BC13. To reflect an applied system, the sorption of metal mixtures was also studied. In these experiments, lead, zinc, and copper sorption from a tertiary mixture were 40.2 +/- 4.3%, 28.7 +/- 3.8%, and 91.3 +/- 3.0%, respectively, of that sorbed in single-metal systems. (c) 2010 Elsevier B.V. All rights reserved.
C1 [Aston, John E.; Peyton, Brent M.] Montana State Univ, Dept Chem & Biol Engn, Bozeman, MT 59717 USA.
   [Apel, William A.; Lee, Brady D.] Idaho Natl Lab, Biol Syst Dept, Idaho Falls, ID 83415 USA.
RP Peyton, BM (reprint author), 305 Cobleigh Hall, Bozeman, MT 59717 USA.
EM bpeyton@coe.montana.edu
RI Peyton, Brent/G-5247-2015
OI Peyton, Brent/0000-0003-0033-0651
FU Department of Energy Idaho Operations Office [DE-AC07-05ID14517];
   Montana Experimental Program to Stimulate Competitive Research; National
   Science Foundation [DGE-0654336]; Department of Chemical and Biological
   Engineering and Center for Biofilm Engineering at Montana State
   University
FX This work was supported in part through the Idaho National Laboratory
   Directed Research and Development program under Department of Energy
   Idaho Operations Office Contract DE-AC07-05ID14517. The authors also
   thank the Montana Experimental Program to Stimulate Competitive Research
   and the National Science Foundation Integrated Graduate Education
   Research Training program for financial support (grant # DGE-0654336),
   as well as the Department of Chemical and Biological Engineering and
   Center for Biofilm Engineering at Montana State University. In addition,
   the authors thank Robin Gerlach of Montana State University for
   assisting with the ICP-MS work.
NR 56
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Z9 11
U1 1
U2 19
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0304-3894
EI 1873-3336
J9 J HAZARD MATER
JI J. Hazard. Mater.
PD DEC 15
PY 2010
VL 184
IS 1-3
BP 34
EP 41
DI 10.1016/j.jhazmat.2010.07.110
PG 8
WC Engineering, Environmental; Engineering, Civil; Environmental Sciences
SC Engineering; Environmental Sciences & Ecology
GA 683VH
UT WOS:000284504800006
PM 20884118
ER

PT J
AU Booth, CH
   Kazhdan, D
   Werkema, EL
   Walter, MD
   Lukens, WW
   Bauer, ED
   Hu, YJ
   Maron, L
   Eisenstein, O
   Head-Gordon, M
   Andersen, RA
AF Booth, Corwin H.
   Kazhdan, Daniel
   Werkema, Evan L.
   Walter, Marc D.
   Lukens, Wayne W.
   Bauer, Eric D.
   Hu, Yung-Jin
   Maron, Laurent
   Eisenstein, Odile
   Head-Gordon, Martin
   Andersen, Richard A.
TI Intermediate-Valence Tautomerism in Decamethylytterbocene Complexes of
   Methyl-Substituted Bipyridines
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID COUPLED CASPT2 CALCULATIONS; AB-INITIO PSEUDOPOTENTIALS; LANTHANIDE
   COMPLEXES; ELECTRONIC-STRUCTURE; OXIDATION-STATE; GROUND-STATES; ION
   STATES; SPIN; CEROCENE; COORDINATION
AB Multiconfigurational, intermediate valent ground states are established in several methyl-substituted bipyridine complexes of bis(pentamethylcyclopentadienyl)ytterbium, Cp-2*Yb (Me-x-bipy). In contrast to Cp-2*Yb(bipy) and other substituted-bipy complexes, the nature of both the ground state and the first excited state are altered by changing the position of the methyl or dimethyl substitutions on the bipyridine rings. In particular, certain substitutions result in multiconfigurational, intermediate valent open-shell singlet states in both the ground state and the first excited state. These conclusions are reached after consideration of single-crystal X-ray diffraction (XRD), the temperature dependence of X-ray absorption near-edge structure (XANES), extended X-ray absorption fine-structure (EXAFS), and magnetic susceptibility data, and are supported by CASSCF-MP2 calculations. These results place the various Cp-2*Yb(bipy) complexes in a new tautomeric class, that is, intermediate-valence tautomers.
C1 [Booth, Corwin H.; Kazhdan, Daniel; Werkema, Evan L.; Walter, Marc D.; Lukens, Wayne W.; Head-Gordon, Martin; Andersen, Richard A.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Chem Sci, Berkeley, CA 94720 USA.
   [Kazhdan, Daniel; Werkema, Evan L.; Walter, Marc D.; Hu, Yung-Jin; Head-Gordon, Martin; Andersen, Richard A.] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
   [Bauer, Eric D.] Los Alamos Natl Lab, Mat Phys & Applicat Div, Los Alamos, NM 87545 USA.
   [Hu, Yung-Jin] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Nucl Sci, Berkeley, CA 94720 USA.
   [Maron, Laurent] Univ Toulouse, INSA UPS LPCNO, F-31077 Toulouse, France.
   CNRS, LPCNO, F-31077 Toulouse, France.
   [Maron, Laurent; Eisenstein, Odile] Univ Montpellier 2, Inst Charles Gerhardt, CNRS UMR 5253, F-34095 Montpellier, France.
RP Booth, CH (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Chem Sci, Berkeley, CA 94720 USA.
EM chbooth@lbl.gov
RI Bauer, Eric/D-7212-2011; Booth, Corwin/A-7877-2008; Walter,
   Marc/E-4479-2012; Eisenstein, Odile/I-1704-2016; 
OI Eisenstein, Odile/0000-0001-5056-0311; Bauer, Eric/0000-0003-0017-1937
FU Director, Office of Science, Office of Basic Energy Sciences, of the
   U.S. Department of Energy (DOE) [DE-AC02-05CH11231]; U.S. DOE (Los
   Alamos)
FX We thank Franziska Bell for several enlightening conversations, and Dr.
   Fred Hollander and Dr. Antonio DiPasquale for their assistance with the
   crystallography at CHEXRAY, the U.C. Berkeley X-ray diffraction
   facility. Portions of this work were supported by the Director, Office
   of Science, Office of Basic Energy Sciences, of the U.S. Department of
   Energy (DOE) under Contract No. DE-AC02-05CH11231, and by the U.S. DOE
   (Los Alamos). L.M. is a junior member of the Institut Universitaire de
   France. CINES (Montpellier) and CalMip (Toulouse) are acknowledged for
   their generous grant of computing time. X-ray absorption data were
   collected at the Stanford Synchrotron Radiation Lightsource, a national
   user facility operated by Stanford University on behalf of the DOE,
   Office of Basic Energy Sciences.
NR 67
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U1 5
U2 51
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 15
PY 2010
VL 132
IS 49
BP 17537
EP 17549
DI 10.1021/ja106902s
PG 13
WC Chemistry, Multidisciplinary
SC Chemistry
GA 694WD
UT WOS:000285328800039
PM 21090709
ER

PT J
AU Feng, WX
   Xiao, D
   Zhang, Y
   Yao, YG
AF Feng, Wanxiang
   Xiao, Di
   Zhang, Ying
   Yao, Yugui
TI Half-Heusler topological insulators: A first-principles study with the
   Tran-Blaha modified Becke-Johnson density functional
SO PHYSICAL REVIEW B
LA English
DT Article
ID SINGLE DIRAC CONE; BAND-STRUCTURE; SURFACE; BI2TE3
AB We systematically investigate the topological band structures of half-Heusler compounds using first-principles calculations. The modified Becke-Johnson exchange potential together with local-density approximation for the correlation potential (MBJLDA) has been used here to obtain accurate band inversion strength and band order. Our results show that a large number of half-Heusler compounds are candidates for three-dimensional topological insulators. The difference between band structures obtained using the LDA and MBJLDA potential is also discussed.
C1 [Feng, Wanxiang; Yao, Yugui] Chinese Acad Sci, Inst Phys, Beijing 100190, Peoples R China.
   [Xiao, Di] Oak Ridge Natl Lab, Div Mat Sci & Technol, Oak Ridge, TN 37831 USA.
   [Zhang, Ying] Beijing Normal Univ, Dept Phys, Beijing 100875, Peoples R China.
   [Zhang, Ying; Yao, Yugui] Univ Texas Austin, Dept Phys, Austin, TX 78712 USA.
RP Feng, WX (reprint author), Chinese Acad Sci, Inst Phys, Beijing 100190, Peoples R China.
RI Zhang, Jian-Min/A-7757-2012; Yao, Yugui/A-8411-2012; Xiao,
   Di/B-1830-2008; Feng, Wanxiang/P-7000-2014
OI Xiao, Di/0000-0003-0165-6848; Feng, Wanxiang/0000-0001-8488-1949
FU NSF of China [10674163, 10974231]; MOST of China [2007CB925000]; Welch
   Foundation [F-1255]; DOE, Division of Materials Science and Engineering
   [DE-FG02-02ER45958]; Supercomputing Center of Chinese Academy of
   Sciences (SCCAS); Texas Advanced Computing Center (TACC)
FX This work was supported by NSF of China (Grants No. 10674163 and No.
   10974231) and the MOST Project of China (Grant No. 2007CB925000), Welch
   Foundation (Grant No. F-1255) and DOE (Grant No. DE-FG02-02ER45958,
   Division of Materials Science and Engineering), and by Supercomputing
   Center of Chinese Academy of Sciences (SCCAS) and Texas Advanced
   Computing Center (TACC)
NR 35
TC 82
Z9 83
U1 3
U2 36
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 15
PY 2010
VL 82
IS 23
AR 235121
DI 10.1103/PhysRevB.82.235121
PG 5
WC Physics, Condensed Matter
SC Physics
GA 713XB
UT WOS:000286769600001
ER

PT J
AU Song, YS
   Yan, LQ
   Lee, B
   Chun, SH
   Kim, KH
   Kim, SB
   Nogami, A
   Katsufuji, T
   Schefer, J
   Chung, JH
AF Song, Y. -S.
   Yan, Li Qin
   Lee, Bumsung
   Chun, Sae Hwan
   Kim, Kee Hoon
   Kim, Sung Baek
   Nogami, A.
   Katsufuji, T.
   Schefer, J.
   Chung, J. -H.
TI Chemical doping-induced flop of ferroelectric polarization in
   multiferroic Mn0.9Co0.1WO4
SO PHYSICAL REVIEW B
LA English
DT Article
ID NEUTRON POWDER DIFFRACTION; MAGNETIC-STRUCTURE; MNWO4; TRANSITIONS; SINQ
AB We studied the multiferroic properties of the incommensurate spiral phase of Mn1-xCoxWO4 using single-crystal neutron-diffraction and ferroelectric measurements. Whereas the rotational plane of the spin spiral is parallel to the b axis for x <= 0.05, it flops by 90 degrees for x=0.10. As a result, the direction of the ferroelectric polarization also flops from the b to the a axis. These results show that the orientation of the ferroelectric polarization in MnWO4 can be controlled via chemical doping.
C1 [Song, Y. -S.; Chung, J. -H.] Korea Univ, Dept Phys, Seoul 136713, South Korea.
   [Yan, Li Qin; Lee, Bumsung; Chun, Sae Hwan; Kim, Kee Hoon] Seoul Natl Univ, Dept Phys & Astron, CeNSCMR, Seoul 151747, South Korea.
   [Kim, Sung Baek] Konyang Univ, Advancement Coll Educ Ctr, Chungnam 320711, South Korea.
   [Nogami, A.; Katsufuji, T.] Waseda Univ, Dept Phys, Tokyo 1698555, Japan.
   [Schefer, J.] Paul Scherrer Inst, Neutron Scattering Lab, CH-5232 Villigen, Switzerland.
   [Chung, J. -H.] Oak Ridge Natl Lab, Joint Insitute Neutron Sci, Oak Ridge, TN 37831 USA.
RP Song, YS (reprint author), Korea Univ, Dept Phys, Seoul 136713, South Korea.
EM jaehc@korea.ac.kr
RI Schefer, Jurg/G-3960-2012; Yan, Liqin/P-4997-2014; Katsufuji,
   Takuro/B-6283-2016
OI Yan, Liqin/0000-0002-2771-7752; Katsufuji, Takuro/0000-0002-3199-1228
FU National Research Foundation of Korea [2010-0017423]; Nuclear RD Program
   [2010-0018369, 2010-0018508]; Basic Research Program [2010-0000594];
   MKE, Korea; National Science Foundation [DMR-0454672]; National
   Institute of Standards and Technology, U.S. Department of Commerce
FX This work was supported by National Research Foundation of Korea through
   the BAERI program (Grant No. 2010-0017423), Nuclear R&D Program (Grant
   No. 2010-0018369), and Basic Research Program (Grant No. 2010-0000594).
   The work at SNU was supported by National Creative Research Initiatives
   and Fundamental R&D Program for Core Technology of Materials by MKE,
   Korea. S. B. Kim was independently supported by Nuclear R&D Program
   (Grant No. 2010-0018508). This work is based on experiments performed at
   the Swiss spallation neutron source SINQ (TriCS), Paul Scherrer
   Institute, Villigen, Switzerland. This work also utilized facilities
   supported in part by the National Science Foundation under Agreement No.
   DMR-0454672. We acknowledge the support of the National Institute of
   Standards and Technology, U.S. Department of Commerce, in providing the
   neutron research facilities used in this work.
NR 19
TC 18
Z9 18
U1 0
U2 6
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 15
PY 2010
VL 82
IS 21
AR 214418
DI 10.1103/PhysRevB.82.214418
PG 5
WC Physics, Condensed Matter
SC Physics
GA 713OZ
UT WOS:000286748600002
ER

PT J
AU Aaltonen, T
   Adelman, J
   Gonzalez, BA
   Amerio, S
   Amidei, D
   Anastassov, A
   Annovi, A
   Antos, J
   Apollinari, G
   Appel, J
   Apresyan, A
   Arisawa, T
   Artikov, A
   Asaadi, J
   Ashmanskas, W
   Attal, A
   Aurisano, A
   Azfar, F
   Badgett, W
   Barbaro-Galtieri, A
   Barnes, VE
   Barnett, BA
   Barria, P
   Bartos, P
   Bauer, G
   Beauchemin, PH
   Bedeschi, F
   Beecher, D
   Behari, S
   Bellettini, G
   Bellinger, J
   Benjamin, D
   Beretvas, A
   Bhatti, A
   Binkley, M
   Bisello, D
   Bizjak, I
   Blair, RE
   Blocker, C
   Blumenfeld, B
   Bocci, A
   Bodek, A
   Boisvert, V
   Bortoletto, D
   Boudreau, J
   Boveia, A
   Brau, B
   Bridgeman, A
   Brigliadori, L
   Bromberg, C
   Brubaker, E
   Budagov, J
   Budd, HS
   Budd, S
   Burkett, K
   Busetto, G
   Bussey, P
   Buzatu, A
   Byrum, KL
   Cabrera, S
   Calancha, C
   Camarda, S
   Campanelli, M
   Campbell, M
   Canelli, F
   Canepa, A
   Carls, B
   Carlsmith, D
   Carosi, R
   Carrillo, S
   Carron, S
   Casal, B
   Casarsa, M
   Castro, A
   Catastini, P
   Cauz, D
   Cavaliere, V
   Cavalli-Sforza, M
   Cerri, A
   Cerrito, L
   Chang, SH
   Chen, YC
   Chertok, M
   Chiarelli, G
   Chlachidze, G
   Chlebana, F
   Cho, K
   Chokheli, D
   Chou, JP
   Chung, K
   Chung, WH
   Chung, YS
   Chwalek, T
   Ciobanu, CI
   Ciocci, MA
   Clark, A
   Clark, D
   Compostella, G
   Convery, ME
   Conway, J
   Corbo, M
   Cordelli, M
   Cox, CA
   Cox, DJ
   Crescioli, F
   Almenar, CC
   Cuevas, J
   Culbertson, R
   Cully, JC
   Dagenhart, D
   d'Ascenzo, N
   Datta, M
   Davies, T
   de Barbaro, P
   De Cecco, S
   Deisher, A
   De Lorenzo, G
   Dell'Orso, M
   Deluca, C
   Demortier, L
   Deng, J
   Deninno, M
   d'Errico, M
   Di Canto, A
   Di Ruzza, B
   Dittmann, JR
   D'Onofrio, M
   Donati, S
   Dong, P
   Dorigo, T
   Dube, S
   Ebina, K
   Elagin, A
   Erbacher, R
   Errede, D
   Errede, S
   Ershaidat, N
   Eusebi, R
   Fang, HC
   Farrington, S
   Fedorko, WT
   Feild, RG
   Feindt, M
   Fernandez, JP
   Ferrazza, C
   Field, R
   Flanagan, G
   Forrest, R
   Frank, MJ
   Franklin, M
   Freeman, JC
   Furic, I
   Gallinaro, M
   Galyardt, J
   Garberson, F
   Garcia, JE
   Garfinkel, AF
   Garosi, P
   Gerberich, H
   Gerdes, D
   Gessler, A
   Giagu, S
   Giakoumopoulou, V
   Giannetti, P
   Gibson, K
   Gimmell, JL
   Ginsburg, CM
   Giokaris, N
   Giordani, M
   Giromini, P
   Giunta, M
   Giurgiu, G
   Glagolev, V
   Glenzinski, D
   Gold, M
   Goldschmidt, N
   Golossanov, A
   Gomez, G
   Gomez-Ceballos, G
   Goncharov, M
   Gonzalez, I
   Gorelov, I
   Goshaw, AT
   Goulianos, K
   Gresele, A
   Grinstein, S
   Grosso-Pilcher, C
   Group, RC
   Grundler, U
   da Costa, JG
   Gunay-Unalan, Z
   Haber, C
   Hahn, SR
   Halkiadakis, E
   Han, BY
   Han, JY
   Happacher, F
   Hara, K
   Hare, D
   Hare, M
   Harr, RF
   Hartz, M
   Hatakeyama, K
   Hays, C
   Heck, M
   Heinrich, J
   Herndon, M
   Heuser, J
   Hewamanage, S
   Hidas, D
   Hill, CS
   Hirschbuehl, D
   Hocker, A
   Hou, S
   Houlden, M
   Hsu, SC
   Hughes, RE
   Hurwitz, M
   Husemann, U
   Hussein, M
   Huston, J
   Incandela, J
   Introzzi, G
   Iori, M
   Ivanov, A
   James, E
   Jang, D
   Jayatilaka, B
   Jeon, EJ
   Jha, MK
   Jindariani, S
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   Jones, M
   Joo, KK
   Jun, SY
   Jung, JE
   Junk, TR
   Kamon, T
   Kar, D
   Karchin, PE
   Kato, Y
   Kephart, R
   Ketchum, W
   Keung, J
   Khotilovich, V
   Kilminster, B
   Kim, DH
   Kim, HS
   Kim, HW
   Kim, JE
   Kim, MJ
   Kim, SB
   Kim, SH
   Kim, YK
   Kimura, N
   Kirsch, L
   Klimenko, S
   Kondo, K
   Kong, DJ
   Konigsberg, J
   Korytov, A
   Kotwal, AV
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   Krumnack, N
   Kruse, M
   Krutelyov, V
   Kuhr, T
   Kulkarni, NP
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   Kwang, S
   Laasanen, AT
   Lami, S
   Lammel, S
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   Lander, RL
   Lannon, K
   Lath, A
   Latino, G
   Lazzizzera, I
   LeCompte, T
   Lee, E
   Lee, HS
   Lee, JS
   Lee, SW
   Leone, S
   Lewis, JD
   Lin, CJ
   Linacre, J
   Lindgren, M
   Lipeles, E
   Lister, A
   Litvintsev, DO
   Liu, C
   Liu, T
   Lockyer, NS
   Loginov, A
   Lovas, L
   Lucchesi, D
   Lueck, J
   Lujan, P
   Lukens, P
   Lungu, G
   Lys, J
   Lysak, R
   MacQueen, D
   Madrak, R
   Maeshima, K
   Makhoul, K
   Maksimovic, P
   Malde, S
   Malik, S
   Manca, G
   Manousakis-Katsikakis, A
   Margaroli, F
   Marino, C
   Marino, CP
   Martin, A
   Martin, V
   Martinez, M
   Martinez-Ballarin, R
   Mastrandrea, P
   Mathis, M
   Mattson, ME
   Mazzanti, P
   McFarland, KS
   McIntyre, P
   McNulty, R
   Mehta, A
   Mehtala, P
   Menzione, A
   Mesropian, C
   Miao, T
   Mietlicki, D
   Miladinovic, N
   Miller, R
   Mills, C
   Milnik, M
   Mitra, A
   Mitselmakher, G
   Miyake, H
   Moed, S
   Moggi, N
   Mondragon, MN
   Moon, CS
   Moore, R
   Morello, MJ
   Morlock, J
   Fernandez, PM
   Mulmenstadt, J
   Mukherjee, A
   Muller, T
   Murat, P
   Mussini, M
   Nachtman, J
   Nagai, Y
   Naganoma, J
   Nakamura, K
   Nakano, I
   Napier, A
   Nett, J
   Neu, C
   Neubauer, MS
   Neubauer, S
   Nielsen, J
   Nodulman, L
   Norman, M
   Norniella, O
   Nurse, E
   Oakes, L
   Oh, SH
   Oh, YD
   Oksuzian, I
   Okusawa, T
   Orava, R
   Osterberg, K
   Griso, SP
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CA CDF Collaboration
TI Observation of single top quark production and measurement of vertical
   bar V-tb vertical bar with CDF
SO PHYSICAL REVIEW D
LA English
DT Article
ID ONE-LOOP AMPLITUDES; CROSS-SECTION; ELECTROMAGNETIC CALORIMETER; PARTON
   DISTRIBUTIONS; FERMILAB TEVATRON; COLLIDER DETECTOR; COLLISIONS;
   UPGRADE; PERFORMANCE; E(+)E(-)
AB We report the observation of electroweak single top quark production in 3: 2 fb(-1) of p (p) over bar collision data collected by the Collider Detector at Fermilab at root s = 1.96 TeV. Candidate events in the W + jets topology with a leptonically decaying W boson are classified as signal-like by four parallel analyses based on likelihood functions, matrix elements, neural networks, and boosted decision trees. These results are combined using a super discriminant analysis based on genetically evolved neural networks in order to improve the sensitivity. This combined result is further combined with that of a search for a single top quark signal in an orthogonal sample of events with missing transverse energy plus jets and no charged lepton. We observe a signal consistent with the standard model prediction but inconsistent with the background-only model by 5.0 standard deviations, with a median expected sensitivity in excess of 5.9 standard deviations. We measure a production cross section of 2.3-(+0.6)(0.5) (stat + sys) pb, extract the value of the Cabibbo-Kobayashi-Maskawa matrix element vertical bar V-tb vertical bar = 0.91(-0.11)(+0.11) (stat + sys) +/- 0.07 (theory), and set a lower limit vertical bar V-tb vertical bar > 0.71 at the 95% C. L., assuming m(t) = 175 GeV/c(2).
C1 [Aaltonen, T.; Mehtala, P.; Orava, R.; Osterberg, K.; Saarikko, H.; van Remortel, N.] Univ Helsinki, Div High Energy Phys, Dept Phys, FIN-00014 Helsinki, Finland.
   [Aaltonen, T.; Mehtala, P.; Orava, R.; Osterberg, K.; Saarikko, H.; van Remortel, N.] Helsinki Inst Phys, FIN-00014 Helsinki, Finland.
   [Chen, Y. C.; Hou, S.; Martin, V.; Mitra, A.; Teng, P. K.; Tsai, S. -Y.; Wang, S. M.] Acad Sinica, Inst Phys, Taipei 11529, Taiwan.
   [Blair, R. E.; Byrum, K. L.; LeCompte, T.; Nodulman, L.; Paramanov, A. A.; Wagner, R. G.; Wicklund, A. B.] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Giakoumopoulou, V.; Giokaris, N.; Manousakis-Katsikakis, A.; Vellidis, C.] Univ Athens, GR-15771 Athens, Greece.
   [Attal, A.; Camarda, S.; Cavalli-Sforza, M.; De Lorenzo, G.; Deluca, C.; D'Onofrio, M.; Grinstein, S.; Martinez, M.; Sorin, V.] Univ Autonoma Barcelona, Inst Fis Altes Energies, E-08193 Bellaterra, Barcelona, Spain.
   [Dittmann, J. R.; Frank, M. J.; Hatakeyama, K.; Hewamanage, S.; Krumnack, N.] Baylor Univ, Waco, TX 76798 USA.
   [Brigliadori, L.; Castro, A.; Deninno, M.; Jha, M. K.; Mazzanti, P.; Moggi, N.; Mussini, M.; Rimondi, F.; Zucchelli, S.] Ist Nazl Fis Nucl, I-40127 Bologna, Italy.
   [Anastassov, A.; Brigliadori, L.; Castro, A.; Mussini, M.; Rimondi, F.; Zucchelli, S.] Univ Bologna, I-40127 Bologna, Italy.
   [Blocker, C.; Clark, D.; Kirsch, L.; Miladinovic, N.] Brandeis Univ, Waltham, MA 02254 USA.
   [Chertok, M.; Conway, J.; Cox, C. A.; Cox, D. J.; Erbacher, R.; Forrest, R.; Ivanov, A.; Johnson, W.; Lander, R. L.; Pellett, D. E.; Schwarz, T.; Smith, J. R.] Univ Calif Davis, Davis, CA 95616 USA.
   [Plager, C.; Wallny, R.; Zheng, Y.] Univ Calif Los Angeles, Los Angeles, CA 90024 USA.
   [Norman, M.; Wuerthwein, F.; Yagil, A.] Univ Calif San Diego, La Jolla, CA 92093 USA.
   [Boveia, A.; Brau, B.; Garberson, F.; Hill, C. S.; Incandela, J.; Krutelyov, V.; Rossin, R.] Univ Calif Santa Barbara, Santa Barbara, CA 93106 USA.
   [Alvarez Gonzalez, B.; Casal, B.; Cuevas, J.; Gomez, G.; Rodrigo, T.; Ruiz, A.; Scodellaro, L.; Vila, I.; Vilar, R.] Univ Cantabria, Inst Fis Cantabria, CSIC, E-39005 Santander, Spain.
   [Galyardt, J.; Jang, D.; Jun, S. Y.; Paulini, M.; Pueschel, E.; Russ, J.; Thome, J.] Carnegie Mellon Univ, Pittsburgh, PA 15213 USA.
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   [Beauchemin, P. -H.; Buzatu, A.; MacQueen, D.; Pashapour, S.; Roy, P.; Sinervo, P.; Snihur, R.; Stelzer, B.; Stelzer-Chilton, O.; Warburton, A.; Williams, G.] McGill Univ, Inst Particle Phys, Montreal, PQ H3A 2T8, Canada.
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   [Bromberg, C.; Gunay-Unalan, Z.; Hussein, M.; Huston, J.; Miller, R.; Tollefson, K.] Michigan State Univ, E Lansing, MI 48824 USA.
   [Shreyber, I.] Inst Theoret & Expt Phys, Moscow 117259, Russia.
   [Gold, M.; Gorelov, I.; Seidel, S.; Strologas, J.; Vogel, M.] Univ New Mexico, Albuquerque, NM 87131 USA.
   [Anastassov, A.; Schmitt, M.; Stentz, D.] Northwestern Univ, Evanston, IL 60208 USA.
   [Hughes, R. E.; Lannon, K.; Parks, B.; Slaunwhite, J.; Winer, B. L.; Wolfe, H.] Ohio State Univ, Columbus, OH 43210 USA.
   [Nakano, I.; Takashima, R.; Tanaka, R.] Okayama Univ, Okayama 7008530, Japan.
   [Kato, Y.; Okusawa, T.; Seiya, Y.; Wakisaka, T.; Yamamoto, K.; Yoshida, T.] Osaka City Univ, Osaka 588, Japan.
   [Azfar, F.; Farrington, S.; Hays, C.; Linacre, J.; Malde, S.; Oakes, L.; Rademacker, J.; Renton, P.] Univ Oxford, Oxford OX1 3RH, England.
   [Amerio, S.; Bisello, D.; Busetto, G.; d'Errico, M.; Dorigo, T.; Gresele, A.; Lazzizzera, I.; Lucchesi, D.; Griso, S. Pagan] Ist Nazl Fis Nucl, Sez Padova Trento, I-35131 Padua, Italy.
   [Amerio, S.; Bisello, D.; Busetto, G.; d'Errico, M.; Gresele, A.; Lazzizzera, I.; Lucchesi, D.; Griso, S. Pagan] Univ Padua, I-35131 Padua, Italy.
   [Ciobanu, C. I.; Corbo, M.; d'Ascenzo, N.; Ershaidat, N.; Saveliev, V.; Savoy-Navarro, A.] Univ Paris 06, LPNHE, CNRS, IN2P3,UMR7585, F-75252 Paris, France.
   [Canepa, A.; Heinrich, J.; Keung, J.; Kroll, J.; Lipeles, E.; Lockyer, N. S.; Neu, C.; Pianori, E.; Rodriguez, T.; Thomson, E.; Tu, Y.; Wagner, P.; Whiteson, D.; Williams, H. H.] Univ Penn, Philadelphia, PA 19104 USA.
   [Barria, P.; Bedeschi, F.; Bellettini, G.; Carosi, R.; Catastini, P.; Cavaliere, V.; Ciocci, M. A.; Crescioli, F.; Dell'Orso, M.; Di Canto, A.; Di Ruzza, B.; Donati, S.; Ferrazza, C.; Garosi, P.; Giannetti, P.; Giunta, M.; Introzzi, G.; Lami, S.; Latino, G.; Leone, S.; Menzione, A.; Morello, M. J.; Piacentino, G.; Punzi, G.; Ristori, L.; Sartori, L.; Scribano, A.; Scuri, F.; Sforza, F.; Squillacioti, P.; Trovato, M.; Turini, N.; Vataga, E.; Volpi, G.] Ist Nazl Fis Nucl, I-56127 Pisa, Italy.
   [Bellettini, G.; Crescioli, F.; Dell'Orso, M.; Di Canto, A.; Donati, S.; Punzi, G.; Sforza, F.; Volpi, G.] Univ Pisa, I-56127 Pisa, Italy.
   [Barria, P.; Catastini, P.; Cavaliere, V.; Ciocci, M. A.; Garosi, P.; Latino, G.; Scribano, A.; Squillacioti, P.; Turini, N.] Univ Siena, I-53100 Siena, Italy.
   [Ferrazza, C.; Trovato, M.; Vataga, E.] Scuola Normale Super Pisa, I-56127 Pisa, Italy.
   [Boudreau, J.; Gibson, K.; Hartz, M.; Liu, C.; Rahaman, A.; Shepard, P. F.] Univ Pittsburgh, Pittsburgh, PA 15260 USA.
   [Apresyan, A.; Barnes, V. E.; Bortoletto, D.; Flanagan, G.; Garfinkel, A. F.; Jones, M.; Laasanen, A. T.; Margaroli, F.; Potamianos, K.; Ranjan, N.; Sedov, A.] Purdue Univ, W Lafayette, IN 47907 USA.
   [Bodek, A.; Boisvert, V.; Budd, H. S.; Chung, Y. S.; de Barbaro, P.; Gimmell, J. L.; Han, B. -Y.; Han, J. Y.; McFarland, K. S.; Sakumoto, W. K.] Univ Rochester, Rochester, NY 14627 USA.
   [Bhatti, A.; Demortier, L.; Gallinaro, M.; Goulianos, K.; Lungu, G.; Mesropian, C.] Rockefeller Univ, New York, NY 10021 USA.
   [De Cecco, S.; Giagu, S.; Iori, M.; Mastrandrea, P.; Rescigno, M.] Ist Nazl Fis Nucl, Sez Roma 1, I-00185 Rome, Italy.
   [Giagu, S.; Iori, M.] Univ Roma La Sapienza, I-00185 Rome, Italy.
   [Dube, S.; Halkiadakis, E.; Hare, D.; Hidas, D.; Lath, A.; Somalwar, S.] Rutgers State Univ, Piscataway, NJ 08855 USA.
   [Asaadi, J.; Aurisano, A.; Elagin, A.; Eusebi, R.; Kamon, T.; Khotilovich, V.; Lee, E.; Lee, S. W.; McIntyre, P.; Safonov, A.; Toback, D.; Weinberger, M.] Texas A&M Univ, College Stn, TX 77843 USA.
   [Cauz, D.; Giordani, M.; Pagliarone, C.; Pauletta, G.; Penzo, A.; Rossi, M.; Santi, L.; Totaro, P.; Zanetti, A.] Ist Nazl Fis Nucl Trieste Udine, I-34100 Trieste, Italy.
   [Giordani, M.; Pauletta, G.; Santi, L.; Totaro, P.] Univ Trieste Udine, I-33100 Udine, Italy.
   [Hara, K.; Kim, S. H.; Kurata, M.; Miyake, H.; Nagai, Y.; Naganoma, J.; Nakamura, K.; Sato, K.; Shimojima, M.; Takeuchi, Y.; Tomura, T.; Ukegawa, F.] Univ Tsukuba, Tsukuba, Ibaraki 305, Japan.
   [Hare, M.; Napier, A.; Rolli, S.; Sliwa, K.; Whitehouse, B.] Tufts Univ, Medford, MA 02155 USA.
   [Arisawa, T.; Ebina, K.; Kimura, N.; Kondo, K.; Yorita, K.] Waseda Univ, Tokyo 169, Japan.
   [Harr, R. F.; Karchin, P. E.; Kulkarni, N. P.; Mattson, M. E.; Shalhout, S. Z.] Wayne State Univ, Detroit, MI 48201 USA.
   [Bellinger, J.; Carlsmith, D.; Chung, W. H.; Herndon, M.; Nett, J.; Pondrom, L.; Pursley, J.; Ramakrishnan, V.; Shon, Y.] Univ Wisconsin, Madison, WI 53706 USA.
   [Almenar, C. Cuenca; Feild, R. G.; Husemann, U.; Loginov, A.; Martin, A.; Schmidt, M. P.; Stanitzki, M.; Tipton, P.] Yale Univ, New Haven, CT 06520 USA.
RP Aaltonen, T (reprint author), Univ Helsinki, Div High Energy Phys, Dept Phys, FIN-00014 Helsinki, Finland.
RI Muelmenstaedt, Johannes/K-2432-2015; Introzzi, Gianluca/K-2497-2015;
   Piacentino, Giovanni/K-3269-2015; Martinez Ballarin,
   Roberto/K-9209-2015; Gorelov, Igor/J-9010-2015; Prokoshin,
   Fedor/E-2795-2012; Canelli, Florencia/O-9693-2016; Moon,
   Chang-Seong/J-3619-2014; Scodellaro, Luca/K-9091-2014; Grinstein,
   Sebastian/N-3988-2014; Paulini, Manfred/N-7794-2014; Russ,
   James/P-3092-2014; unalan, zeynep/C-6660-2015; Lazzizzera,
   Ignazio/E-9678-2015; vilar, rocio/P-8480-2014; Cabrera Urban,
   Susana/H-1376-2015; Garcia, Jose /H-6339-2015; Cavalli-Sforza,
   Matteo/H-7102-2015; ciocci, maria agnese /I-2153-2015; Chiarelli,
   Giorgio/E-8953-2012; Ruiz, Alberto/E-4473-2011; Robson,
   Aidan/G-1087-2011; De Cecco, Sandro/B-1016-2012; St.Denis,
   Richard/C-8997-2012; manca, giulia/I-9264-2012; Amerio,
   Silvia/J-4605-2012; Punzi, Giovanni/J-4947-2012; Zeng, Yu/C-1438-2013;
   Annovi, Alberto/G-6028-2012; Ivanov, Andrew/A-7982-2013; Warburton,
   Andreas/N-8028-2013; Kim, Soo-Bong/B-7061-2014; Lysak, Roman/H-2995-2014
OI Jun, Soon Yung/0000-0003-3370-6109; Toback, David/0000-0003-3457-4144;
   Osterberg, Kenneth/0000-0003-4807-0414; Hays, Chris/0000-0003-2371-9723;
   Farrington, Sinead/0000-0001-5350-9271; Robson,
   Aidan/0000-0002-1659-8284; Gallinaro, Michele/0000-0003-1261-2277;
   Torre, Stefano/0000-0002-7565-0118; Turini, Nicola/0000-0002-9395-5230;
   Lami, Stefano/0000-0001-9492-0147; Giordani, Mario/0000-0002-0792-6039;
   Casarsa, Massimo/0000-0002-1353-8964; Margaroli,
   Fabrizio/0000-0002-3869-0153; Latino, Giuseppe/0000-0002-4098-3502;
   iori, maurizio/0000-0002-6349-0380; Vidal Marono,
   Miguel/0000-0002-2590-5987; Lancaster, Mark/0000-0002-8872-7292;
   Nielsen, Jason/0000-0002-9175-4419; Muelmenstaedt,
   Johannes/0000-0003-1105-6678; Introzzi, Gianluca/0000-0002-1314-2580;
   Piacentino, Giovanni/0000-0001-9884-2924; Martinez Ballarin,
   Roberto/0000-0003-0588-6720; Gorelov, Igor/0000-0001-5570-0133;
   Prokoshin, Fedor/0000-0001-6389-5399; Canelli,
   Florencia/0000-0001-6361-2117; Group, Robert/0000-0002-4097-5254;
   Simonenko, Alexander/0000-0001-6580-3638; Moon,
   Chang-Seong/0000-0001-8229-7829; Scodellaro, Luca/0000-0002-4974-8330;
   Grinstein, Sebastian/0000-0002-6460-8694; Paulini,
   Manfred/0000-0002-6714-5787; Russ, James/0000-0001-9856-9155; unalan,
   zeynep/0000-0003-2570-7611; Lazzizzera, Ignazio/0000-0001-5092-7531;
   ciocci, maria agnese /0000-0003-0002-5462; Chiarelli,
   Giorgio/0000-0001-9851-4816; Ruiz, Alberto/0000-0002-3639-0368; Punzi,
   Giovanni/0000-0002-8346-9052; Annovi, Alberto/0000-0002-4649-4398;
   Ivanov, Andrew/0000-0002-9270-5643; Warburton,
   Andreas/0000-0002-2298-7315; 
FU U.S. Department of Energy; National Science Foundation; Italian Istituto
   Nazionale di Fisica Nucleare; Ministry of Education, Culture, Sports,
   Science and Technology of Japan; Natural Sciences and Engineering
   Research Council of Canada; National Science Council of the Republic of
   China; Swiss National Science Foundation; A. P. Sloan Foundation;
   Bundesministerium fur Bildung und Forschung, Germany; World Class
   University, National Research Foundation of Korea; Science and
   Technology Facilities Council; Royal Society, U.K; Institut National de
   Physique Nucleaire et Physique des Particules/CNRS; Russian Foundation
   for Basic Research; Ministerio de Ciencia e Innovacion; Slovak RD
   Agency; Academy of Finland
FX We thank the Fermilab staff and the technical staffs of the
   participating institutions for their vital contributions. This work was
   supported by the U.S. Department of Energy and National Science
   Foundation; the Italian Istituto Nazionale di Fisica Nucleare; the
   Ministry of Education, Culture, Sports, Science and Technology of Japan;
   the Natural Sciences and Engineering Research Council of Canada; the
   National Science Council of the Republic of China; the Swiss National
   Science Foundation; the A. P. Sloan Foundation; the Bundesministerium
   fur Bildung und Forschung, Germany; the World Class University Program,
   the National Research Foundation of Korea; the Science and Technology
   Facilities Council and the Royal Society, U.K.; the Institut National de
   Physique Nucleaire et Physique des Particules/CNRS; the Russian
   Foundation for Basic Research; the Ministerio de Ciencia e Innovacion,
   and Programa Consolider-Ingenio 2010, Spain; the Slovak R&D Agency; and
   the Academy of Finland.
NR 104
TC 75
Z9 75
U1 2
U2 28
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2470-0010
EI 2470-0029
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 15
PY 2010
VL 82
IS 11
AR 112005
DI 10.1103/PhysRevD.82.112005
PG 59
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DG
UT WOS:000286566600001
ER

PT J
AU Qin, HJ
   Shi, JR
   Cao, YW
   Wu, KH
   Zhang, JD
   Plummer, EW
   Wen, J
   Xu, ZJ
   Gu, GD
   Guo, JD
AF Qin, Huajun
   Shi, Junren
   Cao, Yanwei
   Wu, Kehui
   Zhang, Jiandi
   Plummer, E. W.
   Wen, J.
   Xu, Z. J.
   Gu, G. D.
   Guo, Jiandong
TI Direct Determination of the Electron-Phonon Coupling Matrix Element in a
   Correlated System
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID RAMAN-ACTIVE PHONONS; T-C SUPERCONDUCTORS; BI2SR2CACU2O8; ENERGY; MODE
AB High-resolution electron energy loss spectroscopy measurements have been carried out on an optimally doped cuprate Bi(2)Sr(2)CaCu(2)O(8+delta). The momentum-dependent energy and linewidth of an A(1) optical phonon were obtained. Based on these data as well as detailed knowledge of the electronic structure, we developed a scheme to determine the electron-phonon coupling (EPC) matrix element related to a specific phonon mode. Such an approach is general and applicable to elucidating the full structure of EPC in a system with anisotropic electronic structure.
C1 [Qin, Huajun; Shi, Junren; Cao, Yanwei; Wu, Kehui; Guo, Jiandong] Chinese Acad Sci, Beijing Natl Lab Condensed Matter Phys, Beijing 100190, Peoples R China.
   [Qin, Huajun; Shi, Junren; Cao, Yanwei; Wu, Kehui; Guo, Jiandong] Chinese Acad Sci, Inst Phys, Beijing 100190, Peoples R China.
   [Shi, Junren] Peking Univ, Int Ctr Quantum Mat, Beijing 100871, Peoples R China.
   [Zhang, Jiandi; Plummer, E. W.] Louisiana State Univ, Dept Phys & Astron, Baton Rouge, LA 70808 USA.
   [Wen, J.; Xu, Z. J.; Gu, G. D.] Brookhaven Natl Lab, Upton, NY 11973 USA.
RP Qin, HJ (reprint author), Chinese Acad Sci, Beijing Natl Lab Condensed Matter Phys, Beijing 100190, Peoples R China.
RI Shi, Junren/D-5156-2009; Wen, Jinsheng/F-4209-2010; xu,
   zhijun/A-3264-2013; Gu, Genda/D-5410-2013; Guo, Jiandong/F-2081-2015
OI Wen, Jinsheng/0000-0001-5864-1466; xu, zhijun/0000-0001-7486-2015; Gu,
   Genda/0000-0002-9886-3255; Guo, Jiandong/0000-0002-7893-022X
FU Chinese NSF [NSF-10704084]; Chinese MOST [2006CB921300, 2007CB936800];
   NSF [DMR-0346826, DMR-0451163]; K. C. Wong Education Foundation, Hong
   Kong
FX This work is supported by Chinese NSF-10704084, Chinese MOST
   (2006CB921300 and 2007CB936800), and NSF (DMR-0346826, DMR-0451163, DMS
   & E). J. Z. and J. G. gratefully acknowledge the support of K. C. Wong
   Education Foundation, Hong Kong.
NR 30
TC 7
Z9 7
U1 3
U2 19
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 15
PY 2010
VL 105
IS 25
AR 256402
DI 10.1103/PhysRevLett.105.256402
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713QI
UT WOS:000286752100004
PM 21231605
ER

PT J
AU Zhao, X
   Ciovati, G
   Bieler, TR
AF Zhao, Xin
   Ciovati, G.
   Bieler, T. R.
TI Characterization of etch pits found on a large-grain bulk niobium
   superconducting radio-frequency resonant cavity
SO PHYSICAL REVIEW SPECIAL TOPICS-ACCELERATORS AND BEAMS
LA English
DT Article
AB The performance of superconducting radio-frequency (SRF) resonant cavities made of bulk niobium is limited by nonlinear localized effects. Surface analysis of regions of higher power dissipation is thus of intense interest. Such areas (referred to as "hotspots'') were identified in a large-grain single-cell cavity that had been buffered-chemical polished and dissected for examination by high resolution electron microscopy, electron backscattered diffraction microscopy (EBSD), and optical microscopy. Pits with clearly discernible crystal facets were observed in both "hotspot'' and "coldspot'' specimens. The pits were found in-grain, at bicrystal boundaries, and on tricrystal junctions. They are interpreted as etch pits induced by crystal defects (e.g. dislocations). All coldspots examined had a qualitatively lower density of etch pits or relatively smooth tricrystal boundary junctions. EBSD mapping revealed the crystal orientation surrounding the pits. Locations with high pit density are correlated with higher mean values of the local average misorientation angle distributions, indicating a higher geometrically necessary dislocation content. In addition, a survey of the samples by energy dispersive x-ray analysis did not show any significant contamination of the samples' surface. The local magnetic field enhancement produced by the sharp-edge features observed on the samples is not sufficient to explain the observed degradation of the cavity quality factor, which starts at peak surface magnetic field as low as 20 mT.
C1 [Zhao, Xin; Ciovati, G.] Jefferson Lab, Thomas Jefferson Natl Accelerator Facil, Newport News, VA 23606 USA.
   [Bieler, T. R.] Michigan State Univ, E Lansing, MI 48824 USA.
RP Ciovati, G (reprint author), Jefferson Lab, Thomas Jefferson Natl Accelerator Facil, 12000 Jefferson Ave, Newport News, VA 23606 USA.
EM gciovati@jlab.org
FU U.S. DOE [DE-AC05-06OR23177]
FX We thank G. Slack for the careful cavity dissection. We acknowledge Dr.
   M. Y. Zhu and the College of William & Mary for their support on the SEM
   experiment. We appreciate Olga Trofimova for carefully counting the pit
   density. We also thank Dr. R. Cooks for his EBSD survey of all samples
   and Dr. A. Wu at JLab for the profilometry measurements. We would like
   to acknowledge Dr. C. Reece at JLab for supporting this activity. This
   manuscript has been authored by Jefferson Science Associates, LLC under
   U.S. DOE Contract No. DE-AC05-06OR23177.
NR 23
TC 12
Z9 12
U1 0
U2 12
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-4402
J9 PHYS REV SPEC TOP-AC
JI Phys. Rev. Spec. Top.-Accel. Beams
PD DEC 15
PY 2010
VL 13
IS 12
AR 124701
DI 10.1103/PhysRevSTAB.13.124701
PG 11
WC Physics, Nuclear; Physics, Particles & Fields
SC Physics
GA 694WH
UT WOS:000285330900002
ER

PT J
AU Chien, CC
   Damski, B
AF Chien, Chih-Chun
   Damski, Bogdan
TI Dynamics of a quantum quench in an ultracold atomic BCS superfluid
SO PHYSICAL REVIEW A
LA English
DT Article
ID COSMOLOGICAL EXPERIMENTS; PHASE-TRANSITION
AB We study dynamics of an ultracold atomic BCS superfluid driven toward the BCS superfluid-Fermi-liquid quantum critical point by a gradual decrease of the pairing interaction. We analyze how the BCS superfluid falls out of equilibrium and show that the nonequilibrium gap and Cooper pair size reflect critical properties of the transition. We observe three stages of evolution: adiabatic where the Cooper pair size is inversely proportional to the equilibrium gap, weakly nonequilibrium where it is inversely proportional to the nonequilibrium gap, and strongly nonequilibrium where it decouples from both equilibrium and nonequilibrium gap. These phenomena should stimulate future experimental characterization of nonequilibrium ultracold atomic BCS superfluids.
C1 [Chien, Chih-Chun; Damski, Bogdan] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
RP Chien, CC (reprint author), Los Alamos Natl Lab, Div Theoret, MS B213, Los Alamos, NM 87545 USA.
RI Damski, Bogdan/E-3027-2013
FU US Department of Energy through the LANL/LDRD
FX This work is supported by US Department of Energy through the LANL/LDRD
   Program.
NR 30
TC 2
Z9 2
U1 0
U2 3
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1050-2947
J9 PHYS REV A
JI Phys. Rev. A
PD DEC 14
PY 2010
VL 82
IS 6
AR 063616
DI 10.1103/PhysRevA.82.063616
PG 5
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 713KJ
UT WOS:000286736600012
ER

PT J
AU Zhang, A
   Jordan, JL
   Ivanova, MI
   Weiss, WF
   Roberts, CJ
   Fernandez, EJ
AF Zhang, Aming
   Jordan, Jacob L.
   Ivanova, Magdalena I.
   Weiss, William F.
   Roberts, Christopher J.
   Fernandez, Erik J.
TI Molecular Level Insights into Thermally Induced alpha-Chymotrypsinogen A
   Amyloid Aggregation Mechanism and Semiflexible Protofibril Morphology
SO BIOCHEMISTRY
LA English
DT Article
ID ATOMIC-FORCE MICROSCOPY; PROTEIN AGGREGATION; A-BETA; PROTEOLYTIC
   FRAGMENTATION; STRUCTURAL DIFFERENCES; ACTIVATION-ENERGIES;
   HYDROGEN-EXCHANGE; MASS-SPECTROMETRY; GLOBULAR PROTEIN; FIBRIL FORMATION
AB Understanding nonnative protein aggregation is critical not only to a number of amyloidosis disorders but also for the development of effective and safe biopharmaceuticals. In a series of previous studies [Weiss et al. (2007) Biophys. J. 93, 4392-4403; Andrews et al. (2007) Biochemistry 46, 7558-7571; Andrews et al. (2008) Biochemistry 47, 2397-2403], alpha-chymotrypsinogen A (aCgn) and bovine granulocyte colony stimulating factor (bG-CSF) have been shown to exhibit the kinetic and morphological features of other nonnative aggregating proteins at low pH and ionic strength. In this study, we investigated the structural mechanism of aCgn aggregation. The resultant aCgn aggregates were found to be soluble and exhibited semiflexible filamentous aggregate morphology under transmission electron microscopy. In addition, the filamentous aggregates were demonstrated to possess amyloid characteristics by both Congo red binding and X-ray diffraction. Peptide level hydrogen exchange (HX) analysis suggested that a buried native beta-sheet comprised of three peptide segments (39-46, 51-64, and 106-114) reorganizes into the cross-beta amyloid core of aCgn aggregates and that at least similar to 50% of the sequence adopts a disordered structure in the aggregates. Furthermore, the equimolar, bimodal HX labeling distribution observed for three reported peptides (65-102, 160-180, and 229-245) suggested a heterogeneous assembly of two molecular conformations in aCgn aggregates. This demonstrates that extended beta-sheet interactions typical of the amyloid are sufficiently strong that a relatively small fraction of polypeptide sequence can drive formation of filamentous aggregates even under conditions favoring colloidal stability.
C1 [Zhang, Aming; Jordan, Jacob L.; Fernandez, Erik J.] Univ Virginia, Dept Chem Engn, Charlottesville, VA 22904 USA.
   [Ivanova, Magdalena I.] UCLA DOE Inst Genom & Prote, Los Angeles, CA 90095 USA.
   [Weiss, William F.; Roberts, Christopher J.] Univ Delaware, Dept Chem Engn, Newark, DE 19716 USA.
RP Fernandez, EJ (reprint author), Univ Virginia, Dept Chem Engn, Charlottesville, VA 22904 USA.
EM erik@virginia.edu
FU Amgen, Inc.
FX This research work was funded by financial support from Amgen, Inc.
NR 69
TC 13
Z9 13
U1 2
U2 6
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0006-2960
J9 BIOCHEMISTRY-US
JI Biochemistry
PD DEC 14
PY 2010
VL 49
IS 49
BP 10553
EP 10564
DI 10.1021/bi1014216
PG 12
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 690BL
UT WOS:000284975000021
PM 21067192
ER

PT J
AU Peng, S
   Sun, YG
AF Peng, Sheng
   Sun, Yugang
TI Synthesis of Silver Nanocubes in a Hydrophobic Binary Organic Solvent
SO CHEMISTRY OF MATERIALS
LA English
DT Article
ID DEPENDENT CATALYTIC-ACTIVITY; ENHANCED RAMAN-SPECTROSCOPY;
   SHAPE-CONTROLLED SYNTHESIS; GOLD NANOPARTICLES; METAL NANOCRYSTALS;
   OPTICAL-PROPERTIES; NANOSTRUCTURES; CANCER; AGCL; SIZE
AB Synthesis of metal nanoparticles with controlled shapes in hydrophobic solvents is challenging because homogeneous nucleation with high rate in these solvents is favorable for the formation of multiply twinned (MT) nanoparticles with spherical morphology. In this work, we report an inhomogeneous nucleation strategy in a binary hydrophobic solvent mediated by dimethyldistearylammonium chloride (DDAC), resulting in the coexistence of single-crystalline Ag polyhedrons and MT Ag quasi-spheres at the beginning of the reaction. In the consequent step, the MT Ag nanoparticles are selectively etched and dissolved through oxidation by NO3- ions (from the Ag precursor, AgNO3) with the assistance of Cl ions (from DDAC). The dissolved Ag species are then reduced and deposited on the more stable single-crystalline polyhedrons to form Ag nanocubes. Synergy of the oxidative etching of MT particles and growth of single-crystalline particles leads to Ag nanocubes with high purity when the ripening time is long enough. For example, refluxing a mixing solvent of octyl ether and oleylamine containing AgNO3 (0.02 M) and DDAC (0.03 M) at 260 degrees C for 1 h results in Ag nanocubes with an average edge length of 34 nm and a purity higher than 95%.
C1 [Peng, Sheng; Sun, Yugang] Argonne Natl Lab, Ctr Nanoscale Mat, Argonne, IL 60439 USA.
RP Sun, YG (reprint author), Argonne Natl Lab, Ctr Nanoscale Mat, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM ygsun@anl.gov
RI Peng, Sheng/E-7988-2010; Sun, Yugang /A-3683-2010
OI Sun, Yugang /0000-0001-6351-6977
FU U.S. Department of Energy [DE-FG02-07ER46453, DE-FG02-07ER46471]; U.S.
   Department of Energy, Office of Science, Office of Basic Energy Sciences
   [DE-AC02-06CH11357]
FX We thank Drs. C. Lei and R. Cook for help in TEM characterization. Use
   of the Center for Nanoscale Materials and the Electron Microscopy Center
   for Materials Research at Argonne National Laboratory was supported by
   the U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences, under Contract DE-AC02-06CH11357. TEM and EDS characterization
   was carried out in part in the Frederick Seitz Materials Research
   Laboratory Central Facilities, University of Illinois, which are
   partially supported by the U.S. Department of Energy under grants
   DE-FG02-07ER46453 and DE-FG02-07ER46471.
NR 49
TC 28
Z9 28
U1 1
U2 53
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0897-4756
J9 CHEM MATER
JI Chem. Mat.
PD DEC 14
PY 2010
VL 22
IS 23
BP 6272
EP 6279
DI 10.1021/cm101814f
PG 8
WC Chemistry, Physical; Materials Science, Multidisciplinary
SC Chemistry; Materials Science
GA 690BM
UT WOS:000284975100011
ER

PT J
AU Carroll, KJ
   Hudgins, DM
   Spurgeon, S
   Kemner, KM
   Mishra, B
   Boyanov, MI
   Brown, LW
   Taheri, ML
   Carpenter, EE
AF Carroll, Kyler J.
   Hudgins, Daniel M.
   Spurgeon, Steven
   Kemner, Kennneth M.
   Mishra, Bhoopesh
   Boyanov, Maxim I.
   Brown, Lester W., III
   Taheri, Mitra L.
   Carpenter, Everett E.
TI One-Pot Aqueous Synthesis of Fe and Ag Core/Shell Nanoparticles
SO CHEMISTRY OF MATERIALS
LA English
DT Article
ID CORE-SHELL NANOPARTICLES; STRUCTURED FE/AU NANOPARTICLES; COATED IRON
   NANOPARTICLES; SILVER NANOPARTICLES; MAGNETIC-PROPERTIES; AU
   NANOPARTICLES; BOROHYDRIDE REDUCTION; ELECTRONIC-STRUCTURE; NANOSCALE
   METAL; PARTICLES
AB This article investigates a facile one-pot method for the synthesis of Fe and Ag core/shell nanoparticles by aqueous reduction under ambient conditions. We have shown that the injection time of silver nitrate into a reaction vessel containing aqueous ferrous salt, sodium borohydride, and sodium citrate is a vital parameter for the precise control of a desired core/shell structure. For example, if silver nitrate is injected one minute after sodium borohydride is added to the reaction vessel, Ag will nucleate first followed by Fe, creating monodisperse Ag/Fe core/shell nanoparticles. In contrast, if the introduction time is prolonged to 5 min, Fe nanoparticles will nucleate followed by Ag producing Fe/Ag nanoparticles. The composition, morphology, and magnetic behavior were investigated by X-ray absorption spectroscopy (XAS), X-ray photoelectron spectroscopy (XPS), X-ray diffraction (XRD), transmission electron microscopy (TEM), and room-temperature vibrating sample magnetometry (VSM). Fe/Ag core/shell nanoparticles with optical and magnetic functionality offer broad opportunities in medicine, catalysis, and chemical detection.
C1 [Carroll, Kyler J.; Hudgins, Daniel M.; Brown, Lester W., III; Carpenter, Everett E.] Virginia Commonwealth Univ, Dept Chem, Richmond, VA 23284 USA.
   [Spurgeon, Steven; Taheri, Mitra L.] Drexel Univ, Dept Mat Sci & Engn, Philadelphia, PA 19104 USA.
   [Kemner, Kennneth M.; Mishra, Bhoopesh; Boyanov, Maxim I.] Argonne Natl Lab, Biosci Div, Argonne, IL 60439 USA.
RP Carpenter, EE (reprint author), Virginia Commonwealth Univ, Dept Chem, Box 2006, Richmond, VA 23284 USA.
EM ecarpenter2@vcu.edu
RI BM, MRCAT/G-7576-2011; Carpenter, Everett/A-2797-2010; Mishra,
   Bhoopesh/C-2788-2012; Taheri, Mitra/F-1321-2011; Carroll,
   Kyler/F-3932-2011; Spurgeon, Steven/A-2914-2013
OI Carpenter, Everett/0000-0002-3497-0318; Carroll,
   Kyler/0000-0002-6259-7290; Spurgeon, Steven/0000-0003-1218-839X
FU NSF [CHE-0820945]
FX The authors acknowledge the use of the Centralized Research Facilities
   in Drexel University's College of Engineering and the MRCAT at the
   Advanced Photon Source, which are supported by the United States
   Department of Energy, Office of Science, Basic Energy Sciences Division,
   and the MRCAT member institutions. This research was also supported in
   part by the VCU Nanomaterials Core Characterization Facility, School of
   Engineering Foundation, and a Grant from NSF CHE-0820945 MRI (XPS).
NR 59
TC 21
Z9 22
U1 11
U2 106
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0897-4756
J9 CHEM MATER
JI Chem. Mat.
PD DEC 14
PY 2010
VL 22
IS 23
BP 6291
EP 6296
DI 10.1021/cm101996u
PG 6
WC Chemistry, Physical; Materials Science, Multidisciplinary
SC Chemistry; Materials Science
GA 690BM
UT WOS:000284975100013
ER

PT J
AU Pindzola, MS
   Lee, TG
   Colgan, J
AF Pindzola, M. S.
   Lee, Teck-Ghee
   Colgan, J.
TI Antiproton-impact ionization of H-2
SO JOURNAL OF PHYSICS B-ATOMIC MOLECULAR AND OPTICAL PHYSICS
LA English
DT Article
ID HYDROGEN MOLECULES; SINGLE IONIZATION; PROTON IMPACT; HELIUM
AB Ionization processes in antiproton collisions with H-2 are studied by direct solution of the time-dependent Schrodinger equation. A time-dependent close-coupling method based on an expansion of a one-electron 3D wavefunction in the field of H-2(+) is used to calculate single-ionization cross sections at incident energies ranging from 50 keV to 1.5 MeV. Averaging over the molecular orientations, the single-ionization cross sections are in reasonable agreement with time-dependent basis set calculations and experiment. A time-dependent close-coupling method based on an expansion of a two-electron 6D wavefunction in the field of H-2(2+) is used to calculate single-and double-ionization cross sections at an incident energy of 100 keV. Initiatory 6D results for the H-2(+) production cross section range are somewhat lower than experiment, while the H+ production cross section range brackets experiment.
C1 [Pindzola, M. S.; Lee, Teck-Ghee] Auburn Univ, Dept Phys, Auburn, AL 36849 USA.
   [Colgan, J.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM USA.
RP Pindzola, MS (reprint author), Auburn Univ, Dept Phys, Auburn, AL 36849 USA.
RI Lee, Teck Ghee/D-5037-2012; 
OI Lee, Teck Ghee/0000-0001-9472-3194; Colgan, James/0000-0003-1045-3858
FU US Department of Energy; US National Science Foundation; National Center
   for Computational Sciences in Oak Ridge, TN; National Energy Research
   Scientific Computing Center in Oakland, CA; National Institute for
   Computational Sciences in Knoxville, TN
FX We would like to thank Dr Helge Knudsen at Aarhus University for a table
   of (p) over bar + H<INF>2</INF> experimental data and Dr Armin Luhr and
   Dr Alejandro Saenz for a table of (p) over bar + H<INF>2</INF>
   theoretical data. This work was supported in part by grants from the US
   Department of Energy and the US National Science Foundation.
   Computational test work was carried out under a DOE/INCITE award at the
   National Center for Computational Sciences in Oak Ridge, TN, while
   computational production work was carried out under a DOE ERCAP award at
   the National Energy Research Scientific Computing Center in Oakland, CA,
   and under an NSF Teragrid award at the National Institute for
   Computational Sciences in Knoxville, TN.
NR 12
TC 11
Z9 11
U1 0
U2 2
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 0953-4075
J9 J PHYS B-AT MOL OPT
JI J. Phys. B-At. Mol. Opt. Phys.
PD DEC 14
PY 2010
VL 43
IS 23
AR 235201
DI 10.1088/0953-4075/43/23/235201
PG 6
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 683FS
UT WOS:000284458100013
ER

PT J
AU Fang, ZX
   Newstein, MC
   Garetz, BA
   Balsara, NP
AF Fang, Zhuangxi
   Newstein, Maurice C.
   Garetz, Bruce A.
   Balsara, Nitash P.
TI Measurement and Analysis of the Angular Guided-Wave Depolarized Light
   Scattering Patterns from Block Copolymer Thin Films
SO MACROMOLECULES
LA English
DT Article
ID DIBLOCK COPOLYMER; PHASE-TRANSITIONS; GROWTH-KINETICS; GRAINS; MELT;
   NANOSTRUCTURES; BIREFRINGENCE; LITHOGRAPHY
AB We have measured and analyzed the angular scattering patterns in guided-wave depolarized light scattering (GWDLS) from 500 nm thick diblock copolymer thin films of poly(styrene-block-isoprene) using diffraction grating couplers. The measured pattern is decomposed into the sum of contributions from ordered grains and grating birefringence. Measured patterns are well fitted using a grain model consisting of disks lying in the film plane with elliptical cross sections, randomly oriented optic axes, and variable-length major axes.
C1 [Fang, Zhuangxi; Newstein, Maurice C.; Garetz, Bruce A.] NYU, Polytech Inst, Dept Chem & Biol Sci, Othmer Jacobs Dept Chem & Biol Engn, Brooklyn, NY 11201 USA.
   [Fang, Zhuangxi; Newstein, Maurice C.; Garetz, Bruce A.] NYU, Polytech Inst, Dept Elect & Comp Engn, Brooklyn, NY 11201 USA.
   [Balsara, Nitash P.] Univ Calif Berkeley, Lawrence Berkeley Lab, Dept Chem Engn, Berkeley, CA 94720 USA.
   [Balsara, Nitash P.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Balsara, Nitash P.] Univ Calif Berkeley, Lawrence Berkeley Lab, Environm Energy Technol Div, Berkeley, CA 94720 USA.
RP Garetz, BA (reprint author), NYU, Polytech Inst, Dept Chem & Biol Sci, Othmer Jacobs Dept Chem & Biol Engn, 6 Metrotech Ctr, Brooklyn, NY 11201 USA.
FU National Science Foundation [DMR-0514422, DMR-0966662, DMR-0966765]
FX Financial support provided by the National Science Foundation (Grants
   DMR-0514422, DMR-0966662, and DMR-0966765) is gratefully acknowledged.
   We thank Ming Leung for helpful discussions in the numerical
   computations, Amish Patel for synthesizing the polymer samples, and
   Jeffrey Wilbur for his effort in the development of the GWDLS technique.
NR 27
TC 0
Z9 0
U1 0
U2 6
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0024-9297
J9 MACROMOLECULES
JI Macromolecules
PD DEC 14
PY 2010
VL 43
IS 23
BP 10071
EP 10077
DI 10.1021/ma101791m
PG 7
WC Polymer Science
SC Polymer Science
GA 689YM
UT WOS:000284967000060
ER

PT J
AU Davids, PS
   Intravaia, F
   Rosa, FSS
   Dalvit, DAR
AF Davids, P. S.
   Intravaia, F.
   Rosa, F. S. S.
   Dalvit, D. A. R.
TI Modal approach to Casimir forces in periodic structures
SO PHYSICAL REVIEW A
LA English
DT Article
ID EXTRAORDINARY OPTICAL-TRANSMISSION; SUBWAVELENGTH HOLE ARRAYS; DER-WAALS
   FORCES; DIFFRACTION GRATINGS; MU-M; FORMULATION; SYSTEMS; SOLIDS; RANGE
AB We present a modal approach to calculate finite-temperature Casimir interactions between two periodically modulated surfaces. The scattering formula is used and the reflection matrices of the patterned surfaces are calculated by decomposing the electromagnetic field into the natural modes of the structures. The Casimir force gradient from a deeply etched silicon grating is evaluated using the modal approach and compared to experiment for validation. The Casimir force involving a two-dimensional periodic structure is computed and deviations from the proximity force approximation are examined.
C1 [Davids, P. S.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
   [Intravaia, F.; Rosa, F. S. S.; Dalvit, D. A. R.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
RP Davids, PS (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
RI Intravaia, Francesco/E-6500-2010
OI Intravaia, Francesco/0000-0001-7993-4698
FU DARPA/MTO under DOE/NNSA [DE-AC52-06NA25396]
FX We thank A. Contreras-Reyes, R. Depine, S. Johnson, P. Maia Neto, A.
   McCauley, A. Rodriguez, and D. Skigin for helpful comments relating to
   this research. We are especially thankful to H. B. Chan for providing us
   his experimental data and for the ensuing discussions. This work was
   funded by DARPA/MTO's Casimir Effect Enhancement program under DOE/NNSA
   Contract No. DE-AC52-06NA25396.
NR 80
TC 26
Z9 27
U1 0
U2 10
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1050-2947
J9 PHYS REV A
JI Phys. Rev. A
PD DEC 14
PY 2010
VL 82
IS 6
AR 062111
DI 10.1103/PhysRevA.82.062111
PG 12
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 713KJ
UT WOS:000286736600001
ER

PT J
AU Shin, H
   O'Donnell, SE
   Reinke, P
   Ferralis, N
   Schmid, AK
   Li, HI
   Novaco, AD
   Bruch, LW
   Diehl, RD
AF Shin, Heekeun
   O'Donnell, S. E.
   Reinke, P.
   Ferralis, N.
   Schmid, A. K.
   Li, H. I.
   Novaco, A. D.
   Bruch, L. W.
   Diehl, R. D.
TI Floating two-dimensional solid monolayer of C-60 on graphite
SO PHYSICAL REVIEW B
LA English
DT Article
ID SCANNING-TUNNELING-MICROSCOPY; ORIENTATIONAL-ORDERING TRANSITION;
   THIN-FILM GROWTH; VIBRATIONAL PROPERTIES; INCOMMENSURATE PHASES; KISH
   GRAPHITE; CELL MODEL; ADSORPTION; SURFACE; AG(111)
AB Experiments on both single-crystal graphite and highly oriented pyrolytic graphite indicate that for 60 < T < 300 K, C-60 forms single-layer islands of close-packed molecules at low coverages. Low-energy electron-diffraction measurements on the single crystal indicate that there is almost no preferred orientation of the C-60 lattice relative to the graphite lattice, producing continuous diffraction rings. A slight preference for the C-60 lattice oriented at 30 degrees relative to the graphite lattice is explained as originating in the preference for the C-60 islands to nucleate and align at step edges, observed with scanning tunneling microscopy and low-energy electron microscopy. The energetics of this C-60 layer were investigated using the Novaco-McTague theory of epitaxial orientation, which found several minimum-energy angles near the experimental C-60-C-60 spacing, inconsistent with the experiment and suggesting an extremely small C-60-graphite corrugation. The thermal expansion of this "floating solid" C-60 lattice for 60 < T < 120 K was compared to theoretical models using previously formulated C-60-C-60 pair potentials. The calculated values, assuming perfect two-dimensional layers of spherical C-60, are significantly smaller than the measured values, suggesting that additional thermal excitations, such as those involving molecular orientations, are present in this temperature range.
C1 [Shin, Heekeun; Li, H. I.; Diehl, R. D.] Penn State Univ, Dept Phys, University Pk, PA 16802 USA.
   [O'Donnell, S. E.; Reinke, P.] Univ Virginia, Dept Mat Sci & Engn, Charlottesville, VA 22904 USA.
   [Ferralis, N.] Univ Calif Berkeley, Dept Chem & Biomol Engn, Berkeley, CA 94720 USA.
   [Schmid, A. K.] LBNL, Natl Ctr Electron Microscopy, Berkeley, CA 94720 USA.
   [Novaco, A. D.] Lafayette Coll, Dept Phys, Easton, PA 18042 USA.
   [Bruch, L. W.] Univ Wisconsin, Dept Phys, Madison, WI 53706 USA.
RP Shin, H (reprint author), Penn State Univ, Dept Phys, 104 Davey Lab, University Pk, PA 16802 USA.
FU Roya Maboudian for the LEEM studies; NSF [DMR-0505160]; University of
   Virginia; MITRE [58]; NSF through the Center of Integrated
   Nanomechanical Systems [EEC-0832819]; U.S. Department of Energy
   [DE-AC02-05CH11231]
FX We gratefully acknowledge useful conversations with Ziyou Li and John A.
   Venables, technical assistance from Stephanie Su, and support from Roya
   Maboudian for the LEEM studies. This research was supported by NSF under
   Grant No. DMR-0505160. The STM work was supported through funding by the
   University of Virginia StartupFunding and was supported in part by the
   MITRE Corporation's Accelerated Graduate Degree Program (S.E.O.) (Ref.
   58). The LEEM work was supported by NSF under Grant No. EEC-0832819,
   through the Center of Integrated Nanomechanical Systems, and by the
   National Center for Electron Microscopy, at Lawrence Berkeley National
   Laboratory, which is supported by the U.S. Department of Energy under
   Contract No. DE-AC02-05CH11231.
NR 57
TC 6
Z9 6
U1 2
U2 17
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 14
PY 2010
VL 82
IS 23
AR 235427
DI 10.1103/PhysRevB.82.235427
PG 11
WC Physics, Condensed Matter
SC Physics
GA 713WW
UT WOS:000286769100010
ER

PT J
AU Winkler, R
   Zulicke, U
AF Winkler, R.
   Zuelicke, U.
TI Invariant expansion for the trigonal band structure of graphene
SO PHYSICAL REVIEW B
LA English
DT Article
ID MASSLESS DIRAC FERMIONS; CARBON NANOTUBES; MAGNETIC-FIELD; GRAPHITE;
   SEMICONDUCTORS; CYCLOTRON; RESONANCE; PHASE
AB We present a symmetry analysis of the trigonal band structure in graphene, elucidating the transformational properties of the underlying basis functions and the crucial role of time-reversal invariance. Group theory is used to derive an invariant expansion of the Hamiltonian for electron states near the K points of the graphene Brillouin zone. Besides yielding the characteristic k-linear dispersion and higher oder corrections to it, this approach enables the systematic incorporation of all terms arising from external electric and magnetic fields, strain, and spin-orbit coupling up to any desired order. Several new contributions are found, in addition to reproducing results obtained previously within tight-binding calculations. Physical ramifications of these new terms are discussed.
C1 [Winkler, R.] Univ Illinois, Dept Phys, De Kalb, IL 60115 USA.
   [Winkler, R.] Argonne Natl Lab, Div Mat Sci, Argonne, IL 60439 USA.
   [Zuelicke, U.] Massey Univ, Ctr Theoret Chem & Phys, Auckland 0745, New Zealand.
   [Zuelicke, U.] Massey Univ, MacDiarmid Inst Adv Mat & Nanotechnol, Palmerston North, New Zealand.
   [Zuelicke, U.] Massey Univ, Inst Fundamental Sci, Palmerston North, New Zealand.
RP Winkler, R (reprint author), Univ Illinois, Dept Phys, De Kalb, IL 60115 USA.
RI Zuelicke, Ulrich/B-1287-2009
OI Zuelicke, Ulrich/0000-0001-5055-3330
FU Marsden Fund Council from New-Zealand Government [MAU0702]; Kavli
   Institute for Theoretical Physics China at the Chinese Academy of
   Sciences; DOE BES [DE-AC02-06CH11357]
FX The authors appreciate stimulating discussions with C.-S. Chu, D.
   Culcer, E. I. Rashba, A. I. Signal, and L.-Y. Wang. This work is
   supported by the Marsden Fund Council (Contract No. MAU0702) from
   New-Zealand Government funding, administered by the Royal Society of New
   Zealand. We thank the Kavli Institute for Theoretical Physics China at
   the Chinese Academy of Sciences for hospitality and support during the
   final stages of writing this paper. Work at Argonne was supported by DOE
   BES under Contract No. DE-AC02-06CH11357. U.Z. gratefully acknowledges
   hospitality at the Aspen Center for Physics during the 2008 Summer
   program.
NR 58
TC 39
Z9 40
U1 1
U2 9
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 14
PY 2010
VL 82
IS 24
AR 245313
DI 10.1103/PhysRevB.82.245313
PG 9
WC Physics, Condensed Matter
SC Physics
GA 715PO
UT WOS:000286896600007
ER

PT J
AU Andreyev, AN
   Elseviers, J
   Huyse, M
   Van Duppen, P
   Antalic, S
   Barzakh, A
   Bree, N
   Cocolios, TE
   Comas, VF
   Diriken, J
   Fedorov, D
   Fedosseev, V
   Franchoo, S
   Heredia, JA
   Ivanov, O
   Koster, U
   Marsh, BA
   Nishio, K
   Page, RD
   Patronis, N
   Seliverstov, M
   Tsekhanovich, I
   Van den Bergh, P
   Van De Walle, J
   Venhart, M
   Vermote, S
   Veselsky, M
   Wagemans, C
   Ichikawa, T
   Iwamoto, A
   Moller, P
   Sierk, AJ
AF Andreyev, A. N.
   Elseviers, J.
   Huyse, M.
   Van Duppen, P.
   Antalic, S.
   Barzakh, A.
   Bree, N.
   Cocolios, T. E.
   Comas, V. F.
   Diriken, J.
   Fedorov, D.
   Fedosseev, V.
   Franchoo, S.
   Heredia, J. A.
   Ivanov, O.
   Koester, U.
   Marsh, B. A.
   Nishio, K.
   Page, R. D.
   Patronis, N.
   Seliverstov, M.
   Tsekhanovich, I.
   Van den Bergh, P.
   Van De Walle, J.
   Venhart, M.
   Vermote, S.
   Veselsky, M.
   Wagemans, C.
   Ichikawa, T.
   Iwamoto, A.
   Moeller, P.
   Sierk, A. J.
TI New Type of Asymmetric Fission in Proton-Rich Nuclei
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID FRAGMENTS; BARRIER
AB Avery exotic process of beta-delayed fission of Tl-180 is studied in detail by using resonant laser ionization with subsequent mass separation at ISOLDE (CERN). In contrast to common expectations, the fission-fragment mass distribution of the post-beta-decay daughter nucleus Hg-180 (N/Z = 1.25) is asymmetric. This asymmetry is more surprising since a mass-symmetric split of this extremely neutron-deficient nucleus would lead to two Zr-90 fragments, with magic N = 50 and semimagic Z = 40. This is a new type of asymmetric fission, not caused by large shell effects related to fragment magic proton and neutron numbers, as observed in the actinide region. The newly measured branching ratio for beta-delayed fission of Tl-180 is 3.6(7) x 10(-3)%, approximately 2 orders of magnitude larger than in an earlier study.
C1 [Andreyev, A. N.; Elseviers, J.; Huyse, M.; Van Duppen, P.; Bree, N.; Cocolios, T. E.; Diriken, J.; Ivanov, O.; Patronis, N.; Seliverstov, M.; Van den Bergh, P.; Venhart, M.] Univ Leuven, KU Leuven, Inst Kern & Stralingsfys, B-3001 Louvain, Belgium.
   [Andreyev, A. N.] Univ W Scotland, Sch Engn, Paisley PA1 2BE, Renfrew, Scotland.
   [Antalic, S.; Venhart, M.] Comenius Univ, Dept Nucl Phys & Biophys, SK-84248 Bratislava, Slovakia.
   [Barzakh, A.; Fedorov, D.; Seliverstov, M.] Petersburg Nucl Phys Inst, Gatchina 188350, Russia.
   [Comas, V. F.; Heredia, J. A.] Gesell Schwerionenforsch GSI, D-64291 Darmstadt, Germany.
   [Fedosseev, V.; Marsh, B. A.; Van De Walle, J.] CERN, ISOLDE, CH-1211 Geneva 23, Switzerland.
   [Franchoo, S.] Univ Paris 11, Inst Phys Nucl, CNRS, IN2P3, F-91406 Orsay, France.
   [Koester, U.] Inst Laue Langevin, F-38042 Grenoble 9, France.
   [Nishio, K.; Iwamoto, A.] Japan Atom Energy Agcy, Adv Sci Res Ctr, Tokai, Ibaraki 3191195, Japan.
   [Page, R. D.] Univ Liverpool, Dept Phys, Oliver Lodge Lab, Liverpool L69 7ZE, Merseyside, England.
   [Patronis, N.] Univ Ioannina, Dept Phys, GR-45110 Ioannina, Greece.
   [Tsekhanovich, I.] Univ Manchester, Sch Phys & Astron, Manchester M13 9PL, Lancs, England.
   [Vermote, S.; Wagemans, C.] Univ Ghent, Dept Phys & Astron, B-9000 Ghent, Belgium.
   [Veselsky, M.] Slovak Acad Sci, Inst Phys, Bratislava, Slovakia.
   [Ichikawa, T.] Kyoto Univ, Yukawa Inst Theoret Phys, Kyoto 6068502, Japan.
   [Moeller, P.; Sierk, A. J.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
   [Tsekhanovich, I.] Ctr Etud Nucl Bordeaux Gradignan, F-33175 Gradignan, France.
RP Andreyev, AN (reprint author), Univ Leuven, KU Leuven, Inst Kern & Stralingsfys, B-3001 Louvain, Belgium.
RI Fedorov, Dmitry/C-9508-2014; Fedosseev, Valentin/A-6240-2010; Diriken,
   Jan/G-4724-2010; 
OI Fedorov, Dmitry/0000-0002-8572-896X; Barzakh,
   Anatoly/0000-0002-2879-0169; Fedosseev, Valentin/0000-0001-8767-1445;
   Diriken, Jan/0000-0002-3314-4620; Moller, Peter/0000-0002-5848-3565
FU FWO-Vlaanderen (Belgium); BOF-K. U. Leuven [GOA/2004/03]; IUAP-Belgian
   State Belgian Science Policy (BriX network) [P6/23]; European Commission
   [RII3-CT-2004-506065]; United Kingdom Science and Technology Facilities
   Council (STFC); Slovak grant agency VEGA [1/0091/10]; NNSA of the U.S.
   DOE at Los Alamos National Laboratory [DE-AC52-06NA25396]; University of
   Tennessee [DE-FG02-06ER41407]
FX We thank the ISOLDE Collaboration for providing excellent beams and the
   GSI Target Group for manufacturing the carbon foils. This work was
   supported by FWO-Vlaanderen (Belgium), by GOA/2004/03 (BOF-K. U.
   Leuven), by the IUAP-Belgian State Belgian Science Policy (BriX network
   P6/23), by the European Commission within the Sixth Framework Program
   through I3-EURONS (Contract No. RII3-CT-2004-506065), by the United
   Kingdom Science and Technology Facilities Council (STFC), and by the
   Slovak grant agency VEGA (Contract No. 1/0091/10). This work was carried
   out under the auspices of the NNSA of the U.S. DOE at Los Alamos
   National Laboratory under Contract No. DE-AC52-06NA25396 and a travel
   grant for P. M. to JUSTIPEN at RIKEN under Grant No. DE-FG02-06ER41407
   (University of Tennessee). The work of T. I. was done in the Yukawa
   International Project for Quark-Hadron Sciences (YIPQS).
NR 31
TC 91
Z9 91
U1 5
U2 12
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 14
PY 2010
VL 105
IS 25
AR 252502
DI 10.1103/PhysRevLett.105.252502
PG 5
WC Physics, Multidisciplinary
SC Physics
GA 713QC
UT WOS:000286751500004
PM 21231583
ER

PT J
AU Lee, JS
   Arena, DA
   Yu, P
   Nelson, CS
   Fan, R
   Kinane, CJ
   Langridge, S
   Rossell, MD
   Ramesh, R
   Kao, CC
AF Lee, J. -S.
   Arena, D. A.
   Yu, P.
   Nelson, C. S.
   Fan, R.
   Kinane, C. J.
   Langridge, S.
   Rossell, M. D.
   Ramesh, R.
   Kao, C. -C.
TI Hidden Magnetic Configuration in Epitaxial La1-xSrxMnO3 Films
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID TUNNEL-JUNCTIONS; OXIDES; MANGANITES; INTERFACES; TRANSITION
AB We present an unreported magnetic configuration in epitaxial La1-xSrxMnO3 (x similar to 0: 3) (LSMO) films grown on strontium titanate (STO). X-ray magnetic circular dichroism indicates that the remanent magnetic state of thick LSMO films is opposite to the direction of the applied magnetic field. Spectroscopic and scattering measurements reveal that the average Mn valence varies from mixed Mn3+/Mn4+ to an enriched Mn3+ region near the STO interface, resulting in a compressive lattice along the a, b axis and a possible electronic reconstruction in the Mn e(g) orbital (d(3z2-r2)). This reconstruction may provide a mechanism for coupling the Mn3+ moments antiferromagnetically along the surface normal direction, and in turn may lead to the observed reversed magnetic configuration.
C1 [Lee, J. -S.; Arena, D. A.; Nelson, C. S.] Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
   [Yu, P.; Ramesh, R.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Fan, R.; Kinane, C. J.; Langridge, S.] STFC, ISIS, Oxford OX11 0QH, England.
   [Rossell, M. D.] Univ Calif Berkeley, Lawrence Berkeley Lab, Natl Ctr Electron Microscopy, Berkeley, CA 94720 USA.
   [Ramesh, R.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Kao, C. -C.] SLAC Natl Accelerator Lab, Stanford Synchrotron Radiat Lightsource, Menlo Pk, CA 94025 USA.
RP Lee, JS (reprint author), Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
RI Yu, Pu/F-1594-2014; Rossell, Marta/E-9785-2017; 
OI Langridge, Sean/0000-0003-1104-0772
FU U.S. DOE, Office of Science, Office of BES [DE-AC02-98CH10886]; SRC
   NRI-WIN; Office of Science, Office of BES, Materials Sciences Division
   of the U.S. DOE [DE-AC02-05CH11231]
FX NSLS, BNL, is supported by the U.S. DOE, Office of Science, Office of
   BES, under Contract No. DE-AC02-98CH10886. Berkeley was sponsored by the
   SRC NRI-WIN program as well as by the Director, Office of Science,
   Office of BES, Materials Sciences Division of the U.S. DOE under
   Contract No. DE-AC02-05CH11231.
NR 29
TC 42
Z9 42
U1 1
U2 53
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 14
PY 2010
VL 105
IS 25
AR 257204
DI 10.1103/PhysRevLett.105.257204
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713QC
UT WOS:000286751500015
PM 21231622
ER

PT J
AU Choi, CL
   Koski, KJ
   Olson, ACK
   Alivisatos, AP
AF Choi, Charina L.
   Koski, Kristie J.
   Olson, Andrew C. K.
   Alivisatos, A. Paul
TI Luminescent nanocrystal stress gauge
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
   AMERICA
LA English
DT Article
DE nanoscience; semiconductor nanocrystals; fluorescence; luminescent
   stress gauge
ID ATOMIC-FORCE MICROSCOPE; GOLD NANORODS; QUANTUM DOTS; SPECTROSCOPY;
   DEFORMATION; GROWTH; TISSUE; CELLS; ROD
AB Microscale mechanical forces can determine important outcomes ranging from the site of material fracture to stem cell fate. However, local stresses in a vast majority of systems cannot be measured due to the limitations of current techniques. In this work, we present the design and implementation of the CdSe-CdS core-shell tetrapod nanocrystal, a local stress sensor with bright luminescence readout. We calibrate the tetrapod luminescence response to stress and use the luminescence signal to report the spatial distribution of local stresses in single polyester fibers under uniaxial strain. The bright stress-dependent emission of the tetrapod, its nanoscale size, and its colloidal nature provide a unique tool that may be incorporated into a variety of micromechanical systems including materials and biological samples to quantify local stresses with high spatial resolution.
C1 [Choi, Charina L.; Koski, Kristie J.; Olson, Andrew C. K.; Alivisatos, A. Paul] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Choi, Charina L.; Koski, Kristie J.; Olson, Andrew C. K.; Alivisatos, A. Paul] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
RP Alivisatos, AP (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
EM APAlivisatos@lbl.gov
RI Alivisatos , Paul /N-8863-2015
OI Alivisatos , Paul /0000-0001-6895-9048
FU US Department of Energy, Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering [DE-AC02-05CH11231]; National
   Institutes of Health Roadmap Initiative in Nanomedicine through
   Nanomedicine Development Center [PN2EY016546]
FX We greatly thank Jessy L. Baker for scanning electron microscopy images
   of our sample and helpful discussions. We also thank Bryce Sadtler for
   helping to implement the fluorescence microscope, James H. Nelson for
   CdSe-CdS rod samples, Lynn Browne and Walter Webb for mechanical
   specifications of the polyester fiber sample, and Jonathan Chou,
   Young-wook Jun, and Prashant Jain for helpful discussions and careful
   reading of the manuscript. Research was supported by the US Department
   of Energy, Office of Basic Energy Sciences, Division of Materials
   Sciences and Engineering under Contract DE-AC02-05CH11231 [to K.J.K.,
   A.C.K.O., A. P. A., and the design and development of the stress gauge
   for nonbiological applications] and the National Institutes of Health
   Roadmap Initiative in Nanomedicine through Nanomedicine Development
   Center Award PN2EY016546 [to C. L. C. and the development of the stress
   gauge for biological applications].
NR 32
TC 30
Z9 31
U1 5
U2 31
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 14
PY 2010
VL 107
IS 50
BP 21306
EP 21310
DI 10.1073/pnas.1016022107
PG 5
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 697NY
UT WOS:000285521500018
PM 21098301
ER

PT J
AU Van de Bittner, GC
   Dubikovskaya, EA
   Bertozzi, CR
   Chang, CJ
AF Van de Bittner, Genevieve C.
   Dubikovskaya, Elena A.
   Bertozzi, Carolyn R.
   Chang, Christopher J.
TI In vivo imaging of hydrogen peroxide production in a murine tumor model
   with a chemoselective bioluminescent reporter
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
   AMERICA
LA English
DT Article
DE cancer; molecular imaging; redox biology
ID PROSTATE-CANCER CELLS; LIVING CELLS; FLUORESCENT-PROBES; FIREFLY
   LUCIFERASE; OXIDATIVE STRESS; NEURODEGENERATIVE DISEASES;
   ALKALINE-PHOSPHATASE; BETA-GALACTOSIDASE; QUANTUM YIELD; SUBSTRATE
AB Living organisms produce hydrogen peroxide (H2O2) to kill invading pathogens and for cellular signaling, but aberrant generation of this reactive oxygen species is a hallmark of oxidative stress and inflammation in aging, injury, and disease. The effects of H2O2 on the overall health of living animals remain elusive, in part owing to a dearth of methods for studying this transient small molecule in vivo. Here we report the design, synthesis, and in vivo applications of Peroxy Caged Luciferin-1 (PCL-1), a chemoselective bioluminescent probe for the real-time detection of H2O2 within living animals. PCL-1 is a boronic acid-caged firefly luciferin molecule that selectively reacts with H2O2 to release firefly luciferin, which triggers a bioluminescent response in the presence of firefly luciferase. The high sensitivity and selectivity of PCL-1 for H2O2, combined with the favorable properties of bioluminescence for in vivo imaging, afford a unique technology for real-time detection of basal levels of H2O2 generated in healthy, living mice. Moreover, we demonstrate the efficacy of PCL-1 for monitoring physiological fluctuations in H2O2 levels by directly imaging elevations in H2O2 within testosterone-stimulated tumor xenografts in vivo. The ability to chemoselectively monitor H2O2 fluxes in real time in living animals offers opportunities to dissect H2O2's disparate contributions to health, aging, and disease.
C1 [Van de Bittner, Genevieve C.; Dubikovskaya, Elena A.; Bertozzi, Carolyn R.; Chang, Christopher J.] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
   [Bertozzi, Carolyn R.; Chang, Christopher J.] Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USA.
   [Bertozzi, Carolyn R.] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA.
   [Bertozzi, Carolyn R.] Univ Calif Berkeley, Lawrence Berkeley Lab, Mol Foundry, Berkeley, CA 94720 USA.
RP Chang, CJ (reprint author), Univ Calif Berkeley, Dept Chem, Room 532A,Latimer Hall, Berkeley, CA 94720 USA.
EM chrischang@berkeley.edu
FU Packard Foundation; Sloan Foundation; Amgen; Astra Zeneca; Novartis;
   National Institute of General Medical Sciences [National Institutes of
   Health] [GM 79465, GM 058867]
FX We thank the Packard and Sloan Foundations (C.J.C.), Amgen (C.J.C.),
   Astra Zeneca (C.J.C.), Novartis (C.J.C.), and the National Institute of
   General Medical Sciences [National Institutes of Health GM 79465 (to
   C.J.C.) and National Institutes of Health GM 058867 (to C. R. B.)] for
   funding this work. C.J.C. and C. R. B. are Investigators with the Howard
   Hughes Medical Institute. We thank Christopher Contag (Stanford
   University, Stanford, CA) for his generous gift of LNCaP-luc cells and
   FVB-luc<SUP>+</SUP> mice, as well as Ann Fischer at the UCB Tissue
   Culture Facility for her help with culturing the LNCaP-luc cells.
NR 55
TC 148
Z9 148
U1 13
U2 121
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 14
PY 2010
VL 107
IS 50
BP 21316
EP 21321
DI 10.1073/pnas.1012864107
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 697NY
UT WOS:000285521500020
PM 21115844
ER

PT J
AU Han, WQ
   Wang, XL
AF Han, Wei-Qiang
   Wang, Xiao-Liang
TI Carbon-coated Magneli-phase TinO2n-1 nanobelts as anodes for Li-ion
   batteries and hybrid electrochemical cells
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID TITANIA NANOTUBES; LITHIUM STORAGE; ENERGY-STORAGE; ANATASE TIO2;
   INTERCALATION; OXIDES; CAPACITORS; NANORODS; CATHODE
AB We describe a method for preparing carbon-coated Ti9O17 nanowires using H2Ti3O7 nanobelts as precursors to react with ethane and hydrogen at high-temperature. The carbon-coating layers play a key role in restraining the sintering growth of the core during the phase transformation from H2Ti3O7 to Magneli-phase TinO2n-1, and in retaining the morphology of nanobelts. We demonstrated that the initial reversible capacity of these Ti9O17 nanobelts attained 182 mA h g(-1), a value even higher than the theoretical value of a-TiO2 (167 mA h g(-1)). Cyclic-voltammetry measurement supports the pseudocapacitive lithium-storage behavior of these Magneli-phase Ti9O17 nanobelts. Furthermore, the nanobelts exhibit high power density along with excellent cycling stability in their application as hybrid electrochemical cells. (C) 2010 American Institute of Physics. [doi:10.1063/1.3525369]
C1 [Han, Wei-Qiang; Wang, Xiao-Liang] Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA.
RP Han, WQ (reprint author), Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA.
EM whan@bnl.gov
RI Han, WQ/E-2818-2013
FU U.S. Department of Energy, Office of Basic Energy Sciences
   [DE-AC02-98CH10886]; Brookhaven National Laboratory
FX This research was carried out at the Center for Functional
   Nanomaterials, Brookhaven National Laboratory (BNL), which is supported
   by the U.S. Department of Energy, Office of Basic Energy Sciences, under
   Contract No. DE-AC02-98CH10886, and the E-LDRD Fund of Brookhaven
   National Laboratory.
NR 23
TC 16
Z9 17
U1 7
U2 61
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 13
PY 2010
VL 97
IS 24
AR 243104
DI 10.1063/1.3525369
PG 3
WC Physics, Applied
SC Physics
GA 696ZX
UT WOS:000285481000066
ER

PT J
AU Urban, W
   Pinston, JA
   Rzaca-Urban, T
   Kurpeta, J
   Smith, AG
   Ahmad, I
AF Urban, W.
   Pinston, J. A.
   Rzaca-Urban, T.
   Kurpeta, J.
   Smith, A. G.
   Ahmad, I.
TI Near-yrast, medium-spin structure of the Tc-109 nucleus
SO PHYSICAL REVIEW C
LA English
DT Article
ID FISSION FRAGMENTS; EXCITED-STATES; NEUTRON-RICH; DATA SHEETS; ROTATIONAL
   BANDS; 1ST OBSERVATION; LARGE ARRAYS; ISOTOPES; DECAY; IDENTIFICATION
AB Excited levels in the Tc-109 nucleus, populated in the spontaneous fission of Cm-248, have been studied using the EUROGAM2 array. In Tc-109 we have found a new band corresponding to the pi 5/2 [303] configuration and a three-quasiparticle band with I-pi = (15/2(-)) band-head level at 1749.5 keV. The structure of the 1749.5-keV level probably involves the {pi 5/2(+)[422]nu(5/2(-)[532], 5/2(+)[413])}(15/2-) prolate configuration. The quasiparticle-rotor model calculations performed in this work show that the odd-proton configurations observed in Tc-107 and Tc-109 are consistent with the scheme of proton excitations in a prolate triaxial potential. Significant differences between the degree of triaxiality observed for positive- and negative-parity excitations may be due to blocking of the triaxial shape by the odd proton populating negative-parity orbitals. The properties of the new 494.5-, 1440.7-, and 1748.8-keV levels found in Tc-109 may indicate a change toward an oblate shape in this nucleus.
C1 [Urban, W.] Inst Max Von Laue Paul Langevin, F-38042 Grenoble 9, France.
   [Urban, W.; Rzaca-Urban, T.; Kurpeta, J.] Univ Warsaw, Fac Phys, PL-00681 Warsaw, Poland.
   [Pinston, J. A.] Univ Grenoble 1, Lab Phys Subatom & Cosmol, Inst Natl Polytech Grenoble, Inst Natl Phys Nucl & Phys Particules,CNRS, F-38026 St Martin Dheres, France.
   [Smith, A. G.] Univ Manchester, Sch Phys & Astron, Manchester M13 9PL, Lancs, England.
   [Ahmad, I.] Argonne Natl Lab, Argonne, IL 60439 USA.
RP Urban, W (reprint author), Inst Max Von Laue Paul Langevin, 6 Rue J Horowitz, F-38042 Grenoble 9, France.
FU Polish MNiSW [N N202 007334]; US Department of Energy, Office of Nuclear
   Physics [DE-AC02-06CH11357]
FX This work has been partly supported by the Polish MNiSW Grant No. N N202
   007334 and by the US Department of Energy, Office of Nuclear Physics,
   Contract No. DE-AC02-06CH11357. The authors are grateful to the Office
   of Basic Energy Sciences, US Department of Energy, for the use of
   <SUP>248</SUP>Cm through the transplutonium element production
   facilities at the Oak Ridge National Laboratory.
NR 31
TC 4
Z9 4
U1 1
U2 1
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0556-2813
J9 PHYS REV C
JI Phys. Rev. C
PD DEC 13
PY 2010
VL 82
IS 6
AR 064308
DI 10.1103/PhysRevC.82.064308
PG 12
WC Physics, Nuclear
SC Physics
GA 713LE
UT WOS:000286738700004
ER

PT J
AU Bai, Y
   Hill, RJ
AF Bai, Yang
   Hill, Richard J.
TI Weakly interacting stable hidden sector pions
SO PHYSICAL REVIEW D
LA English
DT Article
ID CP INVARIANCE; DARK-MATTER; SINGLET; SEARCH
AB An unbroken discrete symmetry, analogous to G parity in QCD, exists in standard model extensions with vectorlike coupling of electroweak SU(2) to "hidden sector'' fermions that are confined by a strong gauge force. For an arbitrary irreducible SU(2) representation of the hidden sector fermions, the lightest hidden sector states form an isotriplet of "pions'' with calculable mass splittings and couplings to standard model fields. The parity can be extended to fermions in real representations of color SU(3), and can provide dark matter candidates with distinct collider signatures.
C1 [Bai, Yang] Fermilab Natl Accelerator Lab, Dept Theoret Phys, Batavia, IL 60510 USA.
   [Hill, Richard J.] Univ Chicago, Enrico Fermi Inst, Chicago, IL 60637 USA.
   [Hill, Richard J.] Univ Chicago, Dept Phys, Chicago, IL 60637 USA.
RP Bai, Y (reprint author), Fermilab Natl Accelerator Lab, Dept Theoret Phys, Batavia, IL 60510 USA.
RI Hill, Richard/C-8820-2017
OI Hill, Richard/0000-0003-1982-589X
FU NSF [0855039]; DOE [DE-AC02-07CH11359]
FX We thank W. Bardeen, M. Carena, P. Fox, A. Martin, and especially C.
   Hill for discussions. This research was supported by NSF Grant No.
   0855039 and DOE Contract No. DE-AC02-07CH11359.
NR 20
TC 32
Z9 32
U1 0
U2 0
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 13
PY 2010
VL 82
IS 11
AR 111701
DI 10.1103/PhysRevD.82.111701
PG 5
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DE
UT WOS:000286566400001
ER

PT J
AU Hong, H
   Gray, A
   Xu, RQ
   Zhang, LX
   Chiang, TC
AF Hong, Hawoong
   Gray, Aaron
   Xu, Ruqing
   Zhang, Longxiang
   Chiang, T. -C.
TI Quantum growth of a metal/insulator system: Lead on sapphire
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID X-RAY-DIFFRACTION; SURFACE; SUPERCONDUCTIVITY; RECONSTRUCTION;
   TERMINATION; SCATTERING; ISLANDS
AB We report the observation of quantum growth behavior in a metal-on-insulator system. Using insulating substrates, with their large band gaps, should maximize quantum confinement effects. In a study of Pb film growth and thermal processing on sapphire, we have observed robust preferred island height selection over a wide thickness range-a hallmark of quantum confinement effects-up to 250 degrees C. By contrast, room temperature is the limit for Pb films prepared on Si(111). These results provide the evidence connecting the quantum growth behavior of overlayers with the substrate band gap. (C) 2010 American Institute of Physics. [doi:10.1063/1.3526727]
C1 [Hong, Hawoong] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
   [Gray, Aaron; Xu, Ruqing; Zhang, Longxiang; Chiang, T. -C.] Univ Illinois, Dept Phys, Urbana, IL 61801 USA.
   [Gray, Aaron; Xu, Ruqing; Zhang, Longxiang; Chiang, T. -C.] Univ Illinois, Frederick Seitz Mat Res Lab, Urbana, IL 61801 USA.
RP Hong, H (reprint author), Argonne Natl Lab, Adv Photon Source, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM hhong@aps.anl.gov
RI Chiang, Tai/H-5528-2011; Xu, Ruqing/K-3586-2012
OI Xu, Ruqing/0000-0003-1037-0059
FU U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences [DE-AC02-06CH11357, DE-FG02-07ER46383]
FX This work and the use of the Advanced Photon Source is supported by the
   U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences, under Contract No. DE-AC02-06CH11357 and Grant No.
   DE-FG02-07ER46383 (T.-C.C.).
NR 21
TC 2
Z9 2
U1 1
U2 9
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 13
PY 2010
VL 97
IS 24
AR 241908
DI 10.1063/1.3526727
PG 3
WC Physics, Applied
SC Physics
GA 696ZX
UT WOS:000285481000020
ER

PT J
AU Johnson, C
   Schwindt, PDD
   Weisend, M
AF Johnson, Cort
   Schwindt, Peter D. D.
   Weisend, Michael
TI Magnetoencephalography with a two-color pump-probe, fiber-coupled atomic
   magnetometer
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID ALKALI VAPORS; SPIN-EXCHANGE
AB The authors have detected magnetic fields from the human brain with a compact, fiber-coupled rubidium spin-exchange-relaxation-free magnetometer. Optical pumping is performed on the D1 transition and Faraday rotation is measured on the D2 transition. The beams share an optical axis, with dichroic optics preparing beam polarizations appropriately. A sensitivity of <5 fT/root Hz is achieved. Evoked responses resulting from median nerve and auditory stimulation were recorded with the atomic magnetometer. Recordings were validated by comparison with those taken by a commercial magnetoencephalography system. The design is amenable to arraying sensors around the head, providing a framework for noncryogenic, whole-head magnetoencephalography. (C) 2010 American Institute of Physics. [doi: 10.1063/1.3522648]
C1 [Johnson, Cort; Schwindt, Peter D. D.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
   [Weisend, Michael] Mind Res Network, Albuquerque, NM 87106 USA.
RP Johnson, C (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
EM cnjohns@sandia.gov
FU Sandia National Laboratories; United States Department of Energy
   National Nuclear Security Administration [DE-AC04-94AL85000]
FX This work was supported by a Laboratory Directed Research and
   Development grant at Sandia National Laboratories. Sandia is a
   multiprogram laboratory operated by Sandia Corporation, a Lockheed
   Martin Co., for the United States Department of Energy National Nuclear
   Security Administration under Contract No. DE-AC04-94AL85000. The
   authors wish to thank M. Romalis and V. Shah for useful discussions, M.
   Schendel and K. Paulson for assistance at MRN, M. Pack for field
   cancellation coil design, J. Bryan for electronics design and layout,
   and G. Burns for multifaceted technical assistance.
NR 15
TC 38
Z9 40
U1 2
U2 23
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 13
PY 2010
VL 97
IS 24
AR 243703
DI 10.1063/1.3522648
PG 3
WC Physics, Applied
SC Physics
GA 696ZX
UT WOS:000285481000093
ER

PT J
AU Kim, YS
   Choi, JS
   Kim, J
   Moon, SJ
   Park, BH
   Yu, J
   Kwon, JH
   Kim, M
   Chung, JS
   Noh, TW
   Yoon, JG
AF Kim, Yong Su
   Choi, J. S.
   Kim, J.
   Moon, S. J.
   Park, B. H.
   Yu, J.
   Kwon, J. -H.
   Kim, M.
   Chung, J. -S.
   Noh, T. W.
   Yoon, J. -G.
TI Defect-related room-temperature ferroelectricity in tensile-strained
   SrTiO3 thin films on GdScO3 (110) substrates
SO APPLIED PHYSICS LETTERS
LA English
DT Article
AB We investigate room-temperature (RT) ferroelectricity in tensile-strained SrTiO3 (STO) thin films grown on GdScO3 (110) substrates. To separate the strain and the defect dipole effect, we apply an electric field to measure the polarization in the direction perpendicular to the elongation axis, and the RT ferroelectric polarization is found to be perpendicular to that axis. These results clearly demonstrate the importance of the contribution of defect dipoles to the RT ferroelectricity observed in STO thin films. (C) 2010 American Institute of Physics. [doi:10.1063/1.3525963]
C1 [Kim, Yong Su; Moon, S. J.; Noh, T. W.] Seoul Natl Univ, Dept Phys & Astron, ReCOE & FPRD, Seoul 151747, South Korea.
   [Choi, J. S.; Park, B. H.] Konkuk Univ, Dept Phys, Seoul 143701, South Korea.
   [Kim, J.; Yu, J.] Seoul Natl Univ, Dept Phys & Astron, CSCMR & FPRD, Seoul 151747, South Korea.
   [Kwon, J. -H.; Kim, M.] Seoul Natl Univ, Dept Mat Sci & Engn, Seoul 151744, South Korea.
   [Chung, J. -S.] Soongsil Univ, Dept Phys, Seoul 156743, South Korea.
   [Yoon, J. -G.] Univ Suwon, Dept Phys, Kyonggi Do 445743, South Korea.
RP Kim, YS (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
EM jgyoon@suwon.ac.kr
RI Kim, Miyoung/C-8316-2012; Kwon, Ji-Hwan/E-4832-2012; Park, Bae
   Ho/D-4840-2011; Noh, Tae Won /K-9405-2013
FU Ministry of Science and Technology (MOST); Korean Science and
   Engineering Foundation (KOSEF); Korean Government [KRF-2008-313-C00234]
FX This study was financially supported by Creative Research Initiatives
   (Functionally Integrated Oxide Heterostructures) of the Ministry of
   Science and Technology (MOST) and the Korean Science and Engineering
   Foundation (KOSEF). J.-G.Y. acknowledges support from the Korean
   Research Foundation Grant, funded by the Korean Government (Grant No.
   KRF-2008-313-C00234)
NR 12
TC 10
Z9 10
U1 2
U2 37
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 13
PY 2010
VL 97
IS 24
AR 242907
DI 10.1063/1.3525963
PG 3
WC Physics, Applied
SC Physics
GA 696ZX
UT WOS:000285481000059
ER

PT J
AU Rumaiz, AK
   Woicik, JC
   Carini, GA
   Siddons, DP
   Cockayne, E
   Huey, E
   Lysaght, PS
   Fischer, DA
   Genova, V
AF Rumaiz, Abdul K.
   Woicik, J. C.
   Carini, G. A.
   Siddons, D. P.
   Cockayne, E.
   Huey, E.
   Lysaght, P. S.
   Fischer, D. A.
   Genova, V.
TI Band alignment of atomic layer deposited HfO2 on clean and N passivated
   germanium surfaces
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID OXIDATION; INTERFACES; DETECTOR; PLASMA; GE
AB Hard x-ray photoelectron spectroscopy has been used to study the band alignment between atomic layer deposited HfO2 on clean Ge (100) and nitrogen treated Ge (100) surfaces. The position of the valence-band maximum was determined by convolving theoretically calculated density of states from first-principles calculations and comparing with experimental valence-band data. Using Kraut's method, the valence-band offsets were found to be 3.2 +/- 0.1 and 3.3 +/- 0.1 eV for the samples grown on clean and N passivated Ge, respectively. The oxide charge measured from capacitance-voltage measurements shows a significant increase between the two samples; however, the small change in the band offset between the two systems strongly indicates negligible contribution of the interface to the conduction/valence-band barrier and the band alignment of the heterojunctions. (C) 2010 American Institute of Physics. [doi:10.1063/1.3524262]
C1 [Rumaiz, Abdul K.; Carini, G. A.; Siddons, D. P.; Huey, E.] Brookhaven Natl Lab, Upton, NY 11973 USA.
   [Woicik, J. C.; Cockayne, E.; Fischer, D. A.] NIST, Gaithersburg, MD 20899 USA.
   [Lysaght, P. S.] SEMATECH, Austin, TX 78741 USA.
   [Genova, V.] Cornell Univ, Cornell Nanoscale Sci & Technol Facil, Ithaca, NY 14853 USA.
RP Rumaiz, AK (reprint author), Brookhaven Natl Lab, Upton, NY 11973 USA.
EM rumaiz@bnl.gov
RI Rumaiz, Abdul/J-5084-2012
FU U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences [DE-AC02-98CH10886]; National Science Foundation [ECS-0335765]
FX The authors would like to thank Mark Hybertsen, CFN, Brookhaven National
   Laboratory for discussions. The use of the National Synchrotron Light
   Source and Center for Functional Nanomaterials, Brookhaven National
   Laboratory, was supported by the U.S. Department of Energy, Office of
   Science, Office of Basic Energy Sciences, under Contract No.
   DE-AC02-98CH10886. Part of the work was performed at the Cornell
   NanoScale Facility, a member of the National Nanotechnology
   Infrastructure Network, which is supported by the National Science
   Foundation (Grant No. ECS-0335765). Additional support was provided by
   the National Institute of Standards and Technology.
NR 19
TC 14
Z9 14
U1 2
U2 14
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 13
PY 2010
VL 97
IS 24
AR 242108
DI 10.1063/1.3524262
PG 3
WC Physics, Applied
SC Physics
GA 696ZX
UT WOS:000285481000033
ER

PT J
AU Singh, R
   Rockstuhl, C
   Zhang, WL
AF Singh, Ranjan
   Rockstuhl, Carsten
   Zhang, Weili
TI Strong influence of packing density in terahertz metamaterials
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID SPLIT-RING RESONATORS; INDEX
AB We investigate the response of a terahertz metamaterial depending on the unit cell density. The fundamental inductive capacitive (LC) resonance has its highest quality (Q) factor for a critical period Pc=lambda/n, with lambda being the LC resonance wavelength and n being the refractive index of the substrate. This occurs due to simultaneous excitation of the lowest order lattice mode that strongly favors radiative coupling in the metamaterial plane. Increasing or decreasing the period from Pc reduces the Q factor. Our results suggest that an optimal package density exists in metamaterials to induce the strongest dispersion. (C) 2010 American Institute of Physics. [doi:10.1063/1.3525169]
C1 [Singh, Ranjan; Zhang, Weili] Oklahoma State Univ, Sch Elect & Comp Engn, Stillwater, OK 74078 USA.
   [Singh, Ranjan] Los Alamos Natl Lab, Mat Phys & Applicat Div, Ctr Integrated Nanotechnol, Los Alamos, NM 87545 USA.
   [Rockstuhl, Carsten] Univ Jena, Inst Condensed Matter Theory & Solid State Opt, D-07743 Jena, Germany.
RP Singh, R (reprint author), Oklahoma State Univ, Sch Elect & Comp Engn, Stillwater, OK 74078 USA.
EM ranjan@lanl.gov
RI Rockstuhl, Carsten/B-3810-2011; Singh, Ranjan/B-4091-2010; Zhang,
   Weili/C-5416-2011; Rockstuhl, Carsten/S-5832-2016
OI Singh, Ranjan/0000-0001-8068-7428; Zhang, Weili/0000-0002-8591-0200; 
FU U.S. National Science Foundation [ECCS-0725764]; German Federal Ministry
   of Education and Research (Metamat); DAAD
FX The authors would like to thank Christoph Menzel for contiuous support
   in simulations, Markus Walther for constructive comments, D. R.
   Chowdhury, M. T. Reiten, and J. Zhou for fruitful discussions. This work
   was partially supported by the U.S. National Science Foundation Grant
   No. ECCS-0725764, and the German Federal Ministry of Education and
   Research (Metamat) and the DAAD within the PPP program.
NR 27
TC 50
Z9 51
U1 5
U2 34
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 13
PY 2010
VL 97
IS 24
AR 241108
DI 10.1063/1.3525169
PG 3
WC Physics, Applied
SC Physics
GA 696ZX
UT WOS:000285481000008
ER

PT J
AU Zhang, L
   Tassin, P
   Koschny, T
   Kurter, C
   Anlage, SM
   Soukoulis, CM
AF Zhang, Lei
   Tassin, Philippe
   Koschny, Thomas
   Kurter, Cihan
   Anlage, Steven M.
   Soukoulis, C. M.
TI Large group delay in a microwave metamaterial analog of
   electromagnetically induced transparency
SO APPLIED PHYSICS LETTERS
LA English
DT Article
AB We report on our experimental work concerning a planar metamaterial exhibiting classical electromagnetically induced transparency (EIT). Using a structure with two mirrored split-ring resonators as the dark element and a cut wire as the radiative element, we demonstrate that an EIT-like resonance can be achieved without breaking the symmetry of the structure. The mirror symmetry of the metamaterial's structural element results in a selection rule inhibiting magnetic dipole radiation for the dark element, and the increased quality factor leads to low absorption (<10%) and large group index (of the order of 30). (C) 2010 American Institute of Physics. [doi:10.1063/1.3525925]
C1 [Zhang, Lei; Tassin, Philippe; Koschny, Thomas; Soukoulis, C. M.] Iowa State Univ, Ames Lab, US DOE, Ames, IA 50011 USA.
   [Zhang, Lei; Tassin, Philippe; Koschny, Thomas; Soukoulis, C. M.] Iowa State Univ, Dept Phys & Astron, Ames, IA 50011 USA.
   [Tassin, Philippe] Vrije Univ Brussel, Dept Appl Phys & Photon, B-1050 Brussels, Belgium.
   [Koschny, Thomas; Soukoulis, C. M.] Univ Crete, IESL, Dept Mat Sci & Technol, Iraklion 71110, Crete, Greece.
   [Koschny, Thomas; Soukoulis, C. M.] Univ Crete, FORTH, Iraklion 71110, Crete, Greece.
   [Kurter, Cihan; Anlage, Steven M.] Univ Maryland, Dept Phys, Ctr Nanophys & Adv Mat, College Pk, MD 20742 USA.
RP Tassin, P (reprint author), Iowa State Univ, Ames Lab, US DOE, Ames, IA 50011 USA.
EM mywaters@iastate.edu; tassin@ameslab.gov
RI Tassin, Philippe/B-7152-2008; Soukoulis, Costas/A-5295-2008
FU Department of Energy (Basic Energy Sciences) [DE-AC02-07CH11358]; U.S.
   Office of Naval Research [N000141010925, N000140811058]; European
   Community [213310]; CNAM; Belgian American Educational Foundation
FX The work at Ames Laboratory was partially supported by the Department of
   Energy (Basic Energy Sciences) under Contract No. DE-AC02-07CH11358
   (computational studies). This work was partially supported by the U.S.
   Office of Naval Research, Award No. N000141010925 (synthesis and
   characterization of samples), and the European Community FET project
   PHOME, Contract No. 213310 (theoretical studies). The work at Maryland
   was supported by the U.S. Office of Naval Research, Grant No.
   N000140811058, and the CNAM. P.T. acknowledges a fellowship from the
   Belgian American Educational Foundation.
NR 14
TC 53
Z9 54
U1 5
U2 42
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 13
PY 2010
VL 97
IS 24
AR 241904
DI 10.1063/1.3525925
PG 3
WC Physics, Applied
SC Physics
GA 696ZX
UT WOS:000285481000016
ER

PT J
AU Biedermann, LB
   Beechem, TE
   Ross, AJ
   Ohta, T
   Howell, SW
AF Biedermann, Laura B.
   Beechem, Thomas E.
   Ross, Anthony J.
   Ohta, Taisuke
   Howell, Stephen W.
TI Electrostatic transfer of patterned epitaxial graphene from
   SiC(000(1)over-bar) to glass
SO NEW JOURNAL OF PHYSICS
LA English
DT Article
ID MONOLAYER GRAPHENE; LARGE-AREA; FILMS; RAMAN; TRANSPORT; SILICON;
   DEVICE; LAYERS; SIO2
AB We report on a scalable electrostatic process to transfer epitaxial graphene onto alkali-containing glass substrates. Multilayer epitaxial graphene (MEG) was grown by heating silicon carbide (000 (1) over bar) to high temperatures (1650-1700 degrees C) in an argon-mediated environment. Optical lithography was used to define patterned graphene regions, typically 20 x 20 mu m(2), which were then transferred to Pyrex substrates. For the electrostatic transfer, a large electric potential (1.2 kV) was applied between the donor MEG sample (anode) and the heated acceptor glass substrate (cathode). Atomic force microscopy scans of the transferred graphene showed that the morphology of the transferred multilayer graphene resembles that of the donor MEG. Raman spectroscopy analysis confirmed that the graphene can be transferred without inducing defects. The sheet resistance of the transferred graphene was as low as 150 Omega/square. The transfer of small (1-2 mu m wide) and large (similar to 70 x 70 mu m(2)) graphene patterns to Zerodur demonstrates the versatility of this transfer technique.
C1 [Biedermann, Laura B.; Beechem, Thomas E.; Ross, Anthony J.; Ohta, Taisuke; Howell, Stephen W.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
RP Biedermann, LB (reprint author), Sandia Natl Labs, POB 5800, Albuquerque, NM 87185 USA.
EM lbieder@sandia.gov; swhowel@sandia.gov
FU Laboratory Directed Research and Development (LDRD) program at Sandia
   National Laboratories; US Department of Energy's National Nuclear
   Security Administration [DE-AC04-94AL85000];  [DE-AC52-06NA25396]
FX We thank Thomas Friedmann, Cy Fujimoto and Michael Hibbs for assistance
   with experiments, Matthew Moorman and Brian Swartzentruber for helpful
   comments and Julia Hsu and Alice Kilgo for the use of their equipment.
   This work was supported by the Laboratory Directed Research and
   Development (LDRD) program at Sandia National Laboratories. Sandia is a
   multiprogram laboratory operated by Sandia Corporation, a Lockheed
   Martin company, for the US Department of Energy's National Nuclear
   Security Administration under contract no. DE-AC04-94AL85000. A part of
   this work was performed at the US Department of Energy's Center for
   Integrated Nanotechnologies, at Sandia National Laboratories and at Los
   Alamos National Laboratory (contract no. DE-AC52-06NA25396).
NR 43
TC 3
Z9 3
U1 1
U2 17
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 1367-2630
J9 NEW J PHYS
JI New J. Phys.
PD DEC 13
PY 2010
VL 12
AR 125016
DI 10.1088/1367-2630/12/12/125016
PG 12
WC Physics, Multidisciplinary
SC Physics
GA 698HW
UT WOS:000285585900013
ER

PT J
AU Bostwick, A
   Ohta, T
   McChesney, JL
   Emtsev, KV
   Speck, F
   Seyller, T
   Horn, K
   Kevan, SD
   Rotenberg, E
AF Bostwick, Aaron
   Ohta, Taisuke
   McChesney, Jessica L.
   Emtsev, Konstantin V.
   Speck, Florian
   Seyller, Thomas
   Horn, Karsten
   Kevan, Stephan D.
   Rotenberg, Eli
TI The interaction of quasi-particles in graphene with chemical dopants
SO NEW JOURNAL OF PHYSICS
LA English
DT Article
ID DEGENERATE ELECTRON-GAS; CARBON NANOTUBES; EPITAXIAL GRAPHENE; BACK
   SCATTERING; BERRYS PHASE; GRAPHITE; SPECTRUM; ABSENCE; BANDGAP; ENERGY
AB We review recent developments on the electronic properties of graphene under the influence of adsorbates. Potassium and hydrogen adsorbed on graphene induce very different effects on the graphene electron gas because of the different types-ionic versus covalent-of chemical bonds formed. Potassium readily donates electrons to graphene, and the resulting Fermi sea shows strong electron-plasmon scattering but weak defect scattering. In contrast, hydrogen adsorption saturates a carbon pi bond, leading to the removal of electrons from the graphene. Such hydrogen bonds act as a lattice defect, leading to a sharp reduction in conductivity and an insulating temperature dependence of the resistivity. The marked contrast in the behaviour of these adsorbates derives from the different symmetry classes of their defect geometries.
C1 [Bostwick, Aaron; McChesney, Jessica L.; Rotenberg, Eli] EO Lawrence Berkeley Natl Lab, Adv Light Source, Berkeley, CA 94720 USA.
   [Ohta, Taisuke] Sandia Natl Labs, Surface & Interface Sci Dept, Albuquerque, NM 87185 USA.
   [Emtsev, Konstantin V.; Speck, Florian; Seyller, Thomas] Univ Erlangen Nurnberg, Lehrstuhl Tech Phys, D-91058 Erlangen, Germany.
   [Horn, Karsten] Max Planck Gesell, Fritz Haber Inst, Dept Mol Phys, D-14195 Berlin, Germany.
   [Kevan, Stephan D.] Univ Oregon, Dept Phys, Eugene, OR 97403 USA.
RP Rotenberg, E (reprint author), EO Lawrence Berkeley Natl Lab, Adv Light Source, Berkeley, CA 94720 USA.
EM erotenberg@lbl.gov
RI Seyller, Thomas/F-8410-2011; Kevan, Stephen/F-6415-2010; Bostwick,
   Aaron/E-8549-2010; McChesney, Jessica/K-8911-2013; Rotenberg,
   Eli/B-3700-2009
OI Seyller, Thomas/0000-0002-4953-2142; Kevan, Stephen/0000-0002-4621-9142;
   McChesney, Jessica/0000-0003-0470-2088; Rotenberg,
   Eli/0000-0002-3979-8844
NR 59
TC 7
Z9 7
U1 2
U2 25
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 1367-2630
J9 NEW J PHYS
JI New J. Phys.
PD DEC 13
PY 2010
VL 12
AR 125014
DI 10.1088/1367-2630/12/12/125014
PG 15
WC Physics, Multidisciplinary
SC Physics
GA 698HW
UT WOS:000285585900011
ER

PT J
AU Dempsey, KJ
   Hindmarch, AT
   Wei, HX
   Qin, QH
   Wen, ZC
   Wang, WX
   Vallejo-Fernandez, G
   Arena, DA
   Han, XF
   Marrows, CH
AF Dempsey, K. J.
   Hindmarch, A. T.
   Wei, H. -X.
   Qin, Q. -H.
   Wen, Z. -C.
   Wang, W. -X.
   Vallejo-Fernandez, G.
   Arena, D. A.
   Han, X. -F.
   Marrows, C. H.
TI Cotunneling enhancement of magnetoresistance in double magnetic tunnel
   junctions with embedded superparamagnetic NiFe nanoparticles
SO PHYSICAL REVIEW B
LA English
DT Article
ID COULOMB-BLOCKADE; ELECTRONS
AB Temperature and bias voltage-dependent transport characteristics are presented for double magnetic tunnel junctions (DMTJs) with self-assembled NiFe nanoparticles embedded between insulating alumina barriers. The junctions with embedded nanoparticles are compared to junctions with a single barrier of comparable size and growth conditions. The embedded particles are characterized using x-ray absorption spectroscopy, transmission electron microscopy, and magnetometry techniques, showing that they are unoxidized and remain superparamagnetic to liquid helium temperatures. The tunneling magnetoresistance (TMR) for the DMTJs is lower than the control samples, however, for the DMTJs an enhancement in TMR is seen in the Coulomb blockade region. Fitting the transport data in this region supports the theory that cotunneling is the dominant electron transport process within the Coulomb blockade region, sequential tunneling being suppressed. We therefore see an enhanced TMR attributed to the change in the tunneling process due to the interplay of the Coulomb blockade and spin-dependent tunneling through superparamagnetic nanoparticles, and develop a simple model to quantify the effect, based on the fact that our nanoparticles will appear blocked when measured on femtosecond tunneling time scales.
C1 [Dempsey, K. J.; Hindmarch, A. T.; Marrows, C. H.] Univ Leeds, Sch Phys & Astron, Leeds LS2 9JT, W Yorkshire, England.
   [Wei, H. -X.; Qin, Q. -H.; Wen, Z. -C.; Wang, W. -X.; Han, X. -F.] Chinese Acad Sci, Inst Phys, Beijing Natl Lab Condensed Matter Phys, State Key Lab Magnetism, Beijing 100080, Peoples R China.
   [Vallejo-Fernandez, G.] Univ Glasgow, Sch Phys & Astron, Glasgow G12 8QQ, Lanark, Scotland.
   [Arena, D. A.] Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
RP Dempsey, KJ (reprint author), Univ Leeds, Sch Phys & Astron, Leeds LS2 9JT, W Yorkshire, England.
EM phy9kjd@leeds.ac.uk; c.h.marrows@leeds.ac.uk
RI Marrows, Christopher/D-7980-2011; Hindmarch, Aidan/B-7970-2012; Qin,
   Qihang/E-7266-2012; 
OI Wen, Zhenchao/0000-0001-7496-1339; Marrows,
   Christopher/0000-0003-4812-6393
FU U.K. EPSRC (Engineering and Physical Sciences Research Council); Royal
   Society; National Natural Science Foundation of China; U.S. Department
   of Energy, Office of Basic Energy Sciences for provision of NSLS
   beamtime
FX We would like to acknowledge support from the U.K. EPSRC (Engineering
   and Physical Sciences Research Council), the Royal Society, and the
   National Natural Science Foundation of China, as well as the U.S.
   Department of Energy, Office of Basic Energy Sciences for provision of
   NSLS beamtime.
NR 36
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 13
PY 2010
VL 82
IS 21
AR 214415
DI 10.1103/PhysRevB.82.214415
PG 8
WC Physics, Condensed Matter
SC Physics
GA 713OQ
UT WOS:000286747700006
ER

PT J
AU Herring, SD
   Germann, TC
   Gronbech-Jensen, N
AF Herring, S. Davis
   Germann, Timothy C.
   Gronbech-Jensen, Niels
TI Effects of void size, density, and arrangement on deflagration and
   detonation sensitivity of a reactive empirical bond order high explosive
SO PHYSICAL REVIEW B
LA English
DT Article
ID MOLECULAR-DYNAMICS; MODEL
AB The shock response of two-dimensional model high explosive crystals with various arrangements of circular voids is explored. We simulate a piston impact using molecular-dynamics simulations with a reactive empirical bond order model potential for a submicron, subnanosecond exothermic reaction in a diatomic molecular solid. Voids of radius 10 nm reduce the minimum initiating velocity by a factor of 4; a single 2.5 nm void (per periodic image) reduces the minimum velocity for detonation by 10% and the exponent of the induction time's pressure dependence by about 4. In square lattices of voids all of one size, reducing that size or increasing the porosity while holding the other parameter fixed causes the hotspots to consume the material more quickly and detonation to occur sooner and at lower piston velocities. The early time behavior is seen to follow a very simple ignition and growth model. The hotspots collectively develop a broad pressure wave (a sonic, diffuse deflagration front) that, upon merging with the lead shock, transforms it into a detonation. The reaction yields produced by triangular lattices are not significantly different. With random void arrangements, the mean time to detonation is 15.5% larger than with the square lattice; the standard deviation of detonation delays is just 5.1%.
C1 [Herring, S. Davis; Germann, Timothy C.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
   [Herring, S. Davis; Gronbech-Jensen, Niels] Univ Calif Davis, Dept Appl Sci, Davis, CA 95616 USA.
RP Herring, SD (reprint author), Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
EM herring@lanl.gov; tcg@lanl.gov; ngjensen@ucdavis.edu
OI Germann, Timothy/0000-0002-6813-238X
FU U.S. Department of Energy [AC52-06NA25396]; Advanced Simulation and
   Computing (ASC) program, LANL MDI [75782-001-09]; Fannie and John Hertz
   Foundation
FX This report was prepared by Los Alamos National Security under Contract
   No. DE-AC52-06NA25396 with the U.S. Department of Energy. Funding was
   provided by the Advanced Simulation and Computing (ASC) program, LANL
   MDI under Contract No. 75782-001-09, and the Fannie and John Hertz
   Foundation.
NR 24
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 13
PY 2010
VL 82
IS 21
AR 214108
DI 10.1103/PhysRevB.82.214108
PG 12
WC Physics, Condensed Matter
SC Physics
GA 713OQ
UT WOS:000286747700005
ER

PT J
AU Davies, PJ
   Afanasjev, AV
   Wadsworth, R
   Andreoiu, C
   Austin, RAE
   Carpenter, MP
   Dashdorj, D
   Finlay, P
   Freeman, SJ
   Garrett, PE
   Gorgen, A
   Greene, J
   Grinyer, GF
   Hyland, B
   Jenkins, DG
   Johnston-Theasby, FL
   Joshi, P
   Macchiavelli, AO
   Moore, F
   Mukherjee, G
   Phillips, AA
   Reviol, W
   Sarantites, D
   Schumaker, MA
   Seweryniak, D
   Smith, MB
   Svensson, CE
   Valiente-Dobon, JJ
   Ward, D
AF Davies, P. J.
   Afanasjev, A. V.
   Wadsworth, R.
   Andreoiu, C.
   Austin, R. A. E.
   Carpenter, M. P.
   Dashdorj, D.
   Finlay, P.
   Freeman, S. J.
   Garrett, P. E.
   Goergen, A.
   Greene, J.
   Grinyer, G. F.
   Hyland, B.
   Jenkins, D. G.
   Johnston-Theasby, F. L.
   Joshi, P.
   Macchiavelli, A. O.
   Moore, F.
   Mukherjee, G.
   Phillips, A. A.
   Reviol, W.
   Sarantites, D.
   Schumaker, M. A.
   Seweryniak, D.
   Smith, M. B.
   Svensson, C. E.
   Valiente-Dobon, J. J.
   Ward, D.
TI Evidence of nontermination of collective rotation near the maximum
   angular momentum in Rb-75
SO PHYSICAL REVIEW C
LA English
DT Article
ID DOPPLER-SHIFT ATTENUATION; BANDS; REGION; ARRAYS
AB Two of the four known rotational bands in Rb-75 were studied via the Ca-40(Ca-40,alpha p)Rb-75 reaction at a beam energy of 165 MeV. Transitions were observed up to the maximum spin I-max of the assigned configuration in one case and one-transition short of I-max in the other. Lifetimes were determined using the residual Doppler shift attenuation method. The deduced transition quadrupole moments show a small decrease with increasing spin, but remain large at the highest spins. The results obtained are in good agreement with cranked Nilsson-Strutinsky calculations, which indicate that these rotational bands do not terminate, but remain collective at I-max.
C1 [Davies, P. J.; Wadsworth, R.; Jenkins, D. G.; Johnston-Theasby, F. L.; Joshi, P.] Univ York, Dept Phys, York YO10 5DD, N Yorkshire, England.
   [Afanasjev, A. V.] Mississippi State Univ, Dept Phys & Astron, Mississippi State, MS 39762 USA.
   [Afanasjev, A. V.] Univ Latvia, Inst Solid State Phys, Lab Radiat Phys, LV-2169 Salaspils, Latvia.
   [Andreoiu, C.; Finlay, P.; Garrett, P. E.; Grinyer, G. F.; Hyland, B.; Phillips, A. A.; Schumaker, M. A.; Svensson, C. E.; Valiente-Dobon, J. J.] Univ Guelph, Dept Phys, Guelph, ON N1G 2W1, Canada.
   [Austin, R. A. E.] McMaster Univ, Dept Phys & Astron, Hamilton, ON L8S 4K1, Canada.
   [Carpenter, M. P.; Freeman, S. J.; Greene, J.; Moore, F.; Mukherjee, G.; Seweryniak, D.] Argonne Natl Lab, Div Phys, Argonne, IL 60439 USA.
   [Dashdorj, D.] N Carolina State Univ, Raleigh, NC 27695 USA.
   [Freeman, S. J.] Univ Manchester, Dept Phys & Astron, Manchester M15 9PL, Lancs, England.
   [Goergen, A.] CEA Saclay, IRFU, Serv Phys Nucl, F-91191 Gif Sur Yvette, France.
   [Macchiavelli, A. O.; Ward, D.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Reviol, W.; Sarantites, D.] Washington Univ, Dept Chem, St Louis, MO 63130 USA.
   [Smith, M. B.] TRIUMF, Vancouver, BC V6T 2A3, Canada.
RP Davies, PJ (reprint author), Univ York, Dept Phys, York YO10 5DD, N Yorkshire, England.
EM pjd113@york.ac.uk
RI Freeman, Sean/B-1280-2010; Carpenter, Michael/E-4287-2015
OI Freeman, Sean/0000-0001-9773-4921; Carpenter,
   Michael/0000-0002-3237-5734
FU UK's EPSRC; UK's STFC; Canada's NSERC; Sweden's Science Research
   Council; Government of Ontario; US Department of Energy
   [DE-AC02-06CH11357, DE-FG02-07ER41459, DE-AC03-76SF00098,
   DE-FG02-88ER-40406]
FX The authors wish to thank the accelerator staff at Argonne National
   Laboratory for providing the beam. Funding for this work is acknowledged
   from the UK's EPSRC and STFC, Canada's NSERC, Sweden's Science Research
   Council, the Government of Ontario through the Premier's Research
   Excellence program, and the US Department of Energy under Contract Nos.
   DE-AC02-06CH11357, DE-FG02-07ER41459, DE-AC03-76SF00098, and
   DE-FG02-88ER-40406.
NR 21
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U1 0
U2 2
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0556-2813
J9 PHYS REV C
JI Phys. Rev. C
PD DEC 13
PY 2010
VL 82
IS 6
AR 061303
DI 10.1103/PhysRevC.82.061303
PG 5
WC Physics, Nuclear
SC Physics
GA 713LE
UT WOS:000286738700001
ER

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CA ATLAS Collaboration
TI Observation of a Centrality-Dependent Dijet Asymmetry in Lead-Lead
   Collisions at root s(NN)=2.76 TeV with the ATLAS Detector at the LHC
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
AB By using the ATLAS detector, observations have been made of a centrality-dependent dijet asymmetry in the collisions of lead ions at the Large Hadron Collider. In a sample of lead-lead events with a per-nucleon center of mass energy of 2.76 TeV, selected with a minimum bias trigger, jets are reconstructed in fine-grained, longitudinally segmented electromagnetic and hadronic calorimeters. The transverse energies of dijets in opposite hemispheres are observed to become systematically more unbalanced with increasing event centrality leading to a large number of events which contain highly asymmetric dijets. This is the first observation of an enhancement of events with such large dijet asymmetries, not observed in proton-proton collisions, which may point to an interpretation in terms of strong jet energy loss in a hot, dense medium.
C1 [Aad, G.; Ahles, F.; Beckingham, M.; Bernhard, R.; Bitenc, U.; Bruneliere, R.; Caron, S.; Carpentieri, C.; Christov, A.; Dahlhoff, A.; Dietrich, J.; Eckert, S.; Fehling-Kaschek, M.; Flechl, M.; Glatzer, J.; Hartert, J.; Herten, G.; Horner, S.; Jakobs, K.; Ketterer, C.; Koetsveld, F.; Kollefrath, M.; Kononov, A. I.; Kuehn, S.; Lai, S.; Landgraf, U.; Lohwasser, K.; Ludwig, I.; Ludwig, J.; Lumb, D.; Maassen, M.; Mahout, G.; Meinhardt, J.; Mohr, W.; Nilsen, H.; Parzefall, U.; Bueso, X. Portell; Rammensee, M.; Runge, K.; Rurikova, Z.; Schmidt, E.; Schumacher, M.; Siegert, F.; Stoerig, K.; Sundermann, J. E.; Temming, K. K.; Thoma, S.; Tobias, J.; Tsiskaridze, V.; Venturi, M.; Vivarelli, I.; von Radziewski, H.; Warsinsky, M.; Weiser, C.; Wiik, L. A. M.; Winkelmann, S.; Xie, S.; Zimmermann, S.] Univ Freiburg, Fak Math & Phys, D-79104 Freiburg, Germany.
   [Alam, M. S.; Dhullipudi, R.; Ernst, J.; Rojo, V.] SUNY Albany, Albany, NY 12222 USA.
   [Bahinipati, S.; Buchanan, N. J.; Chan, K.; Chen, L.; Gingrich, D. M.; Kim, M. S.; Liu, S.; Lu, J.; Moore, R. W.; Pinfold, J. L.; Sondericker, J.; Subramania, S.] Univ Alberta, Dept Phys, Ctr Particle Phys, Edmonton, AB T6G 2G7, Canada.
   [Persembe, S.; Sultansoy, S.; Cakir, I. Turk; Yilmaz, M.] Ankara Univ, Fac Sci, Dept Phys, TR-061000 Ankara, Turkey.
   [Cakir, O.; Ciftci, R.] Dumlupinar Univ, Fac Arts & Sci, Dept Phys, Kutahya, Turkey.
   [Yildiz, H. Duran] Gazi Univ, Fac Arts & Sci, Dept Phys, TR-06500 Ankara, Turkey.
   [Cakir, I. Turk; Yilmaz, M.] TOBB Univ Econ & Technol, Fac Arts & Sci, Div Phys, TR-06560 Ankara, Turkey.
   [Cakir, I. Turk] Turkish Atom Energy Commiss, TR-06530 Ankara, Turkey.
   [Bella, L. Aperio; Arnaez, O.; Aubert, B.; Aurousseau, M.; Berger, N.; Colas, J.; Di Ciaccio, L.; Doan, T. K. O.; El Kacimi, M.; Elles, S.; Ghez, P.; Gouanere, M.; Goy, C.; Grosse-Knetter, J.; Hryn'ova, T.; Iengo, P.; Ionescu, G.; Jeremie, A.; Jezequel, S.; Kataoka, M.; Labbe, J.; Lafaye, R.; Laplace, S.; Mastroberardino, A.; Perrodo, P.; Przysiezniak, H.; Sauvage, G.; Todorov, T.; Wingerter-Seez, I.; Ziolkowski, M.; Zolnierowski, Y.] Univ Savoie, LAPP, CNRS, IN2P3, Annecy Le Vieux, France.
   [Asquith, L.; Blair, R. E.; Chekanov, S.; Dawson, J. W.; Fellmann, D.; Gieraltowski, G. F.; Grognuz, J.; Hill, D.; Hill, N.; Karr, K.; LeCompte, T.; Malon, D.; Mayne, A.; Nodulman, L.; Paramonov, A.; Price, L. E.; Proudfoot, J.; Ferrando, B. M. Salvachua; Schlereth, J. L.; Stamen, R.; Underwood, D. G.; van Gemmeren, P.; Vaniachine, A.; Yoshida, R.; Zhang, J.] Argonne Natl Lab, Div High Energy Phys, Argonne, IL 60439 USA.
   [Cheu, E.; Johns, K. A.; Kaushik, V.; Lampen, C. L.; Lampl, W.; Lei, X.; Loch, P.; Mal, P.; Ruhr, F.; Rutherfoord, J. P.; Shaver, L.; Shupe, M. A.; Varnes, E. W.] Univ Arizona, Dept Phys, Tucson, AZ 85721 USA.
   [Brandt, A.; De, K.; Farbin, A.; Kim, H.; Nilsson, P.; Ozturk, N.; Pravahan, R.; Sarkisyan-Grinbaum, E.; Sorbi, M.; Stradling, A. R.; Usai, G.; Vartapetian, A.; White, A.; Yu, J.] Univ Texas Arlington, Dept Phys, Arlington, TX 76019 USA.
   [Antonaki, A.; Fassouliotis, D.; Giakoumopoulou, V.; Giokaris, N.; Ioannou, P.; Kourkoumelis, C.; Manousakis-Katsikakis, A.; Tzanakos, G.; Vellidis, C.] Univ Athens, Dept Phys, GR-15771 Athens, Greece.
   [Alexopoulos, T.; Avramidou, R.; Dris, M.; Filippas, A.; Fokitis, M.; Gazis, E. N.; Georgatos, F.; Iakovidis, G.; Katsoufis, E.; Maltezos, S.; Mountricha, E.; Panagiotopoulou, E.; Papadopoulou, Th. D.; Savva, P.; Tsarouchas, C.; Tsipolitis, G.; Vlachos, S.; Xaplanteris, L.] Natl Tech Univ Athens, Dept Phys, GR-15780 Zografos, Greece.
   [Abdinov, O.; Aliyev, M.; Huseynov, N.; Khalil-zada, F.; Rzaeva, S.] Azerbaijan Acad Sci, Inst Phys, AZ-143 Baku, Azerbaijan.
   [Abdallah, J.; Bosman, M.; Casado, M. P.; Cavalli-Sforza, M.; Conidi, M. C.; Demirkoz, B.; Dosil, M.; Curull, X. Espinal; Fiorini, L.; Heim, S.; Helsens, C.; Korolkov, I.; Outschoorn, V. Martinez; Meoni, E.; Mir, L. M.; Verge, L. Miralles; Nadal, J.; Francisco, O. Norniella; Osuna, C.; Pages, A. Pacheco; Aranda, C. Padilla; Codina, E. Perez; Riu, I.; Rossetti, V.; Segura, E.; Sushkov, S.; Vaque, F. Vives; Volpi, M.; Vorwerk, V.] Univ Autonoma Barcelona, IFAE, ES-08193 Bellaterra, Barcelona, Spain.
   [Borjanovic, I.; Krstic, J.] Univ Belgrade, Inst Phys, Belgrade 11001, Serbia.
   [Bozovic-Jelisavcic, I.] Vinca Inst Nucl Sci, Belgrade 11000, Serbia.
   [Buanes, T.; Eigen, G.; Johansen, L. G.; Kastanas, A.; Liebig, W.; Lipniacka, A.; Mohn, B.; Oye, O. K.; Rosendahl, P. L.; Sandaker, H.; Sjursen, T. B.; Stugu, B.; Tonoyan, A.; Ugland, M.] Univ Bergen, Dept Phys & Technol, NO-5007 Bergen, Norway.
   [Alonso, J.; Arguin, J-F; Bach, A. M.; Galtieri, A. Barbaro; Barnett, R. M.; Beringer, J.; Biesiada, J.; Calafiura, P.; Ciocio, A.; Cooke, M.; Dube, S.; Einsweiler, K.; Ely, R.; Gaponenko, A.; Garcia-Sciveres, M.; Gilchriese, M.; Hackenburg, R.; Hinchliffe, I.; Hsu, S. -C.; Hurwitz, M.; Joseph, J.; Korn, A.; Lavrijsen, W.; Leggett, C.; Loscutoff, P.; Lys, J.; Madaras, R. J.; Quarrie, D. R.; Ruwiedel, C.; Scherzer, M. I.; Shapiro, M.; Siegrist, J.; Skinnari, L. A.; Staude, A.; Tatarkhanov, M.; Tompkins, L.; Vahsen, S.; Varouchas, D.; Virzi, J.; Yao, W-M; Yao, Y.; Zdrazil, M.; Zenz, S.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Alonso, J.; Arguin, J-F; Bach, A. M.; Galtieri, A. Barbaro; Beringer, J.; Biesiada, J.; Ciocio, A.; Einsweiler, K.; Gaponenko, A.; Hinchliffe, I.; Joseph, J.; Korn, A.; Leggett, C.; Lys, J.; Quarrie, D. R.; Ruwiedel, C.; Siegrist, J.; Staude, A.; Tompkins, L.; Varouchas, D.; Virzi, J.] Univ Calif Berkeley, Div Phys, Berkeley, CA 94720 USA.
   [Aliev, M.; Giorgi, F. M.; Grancagnolo, S.; Herrberg, R.; Kind, O.; Kolanoski, H.; Kwee, R.; Lacker, H.; Leyton, M.; Lohse, T.; Mandrysch, R.; Nikiforov, A.; Garcia, Y. Rodriguez; Schulz, H.; Sidoti, A.; zur Nedden, M.] Humboldt Univ, Inst Phys, D-12489 Berlin, Germany.
   [Battaglia, A.; Beck, H. P.; Borer, C.; Ereditato, A.; Martin, T. Fonseca; Gallo, V.; Haug, S.; Kabana, S.; Pretzl, K.; Topfel, C.; Venturi, N.; Weber, M. S.] Univ Bern, Albert Einstein Ctr Fundamental Phys, High Energy Phys Lab, CH-3012 Bern, Switzerland.
   [Bansil, H. S.; Booth, J. R. A.; Bracinik, J.; Bright-Thomas, P. G.; Charlton, D. G.; Collins, N. J.; Curtis, C. J.; Dowell, J. D.; Garvey, J.; Haefner, P.; Harrison, K.; Hawkes, C. M.; Head, S. J.; Hillier, S. J.; Homer, R. J.; Lilley, J. N.; Maiani, C.; Marti-Garcia, S.; dit Latour, B. Martin; Mclaughlan, T.; McMahon, T. J.; Newman, P. R.; O'Neale, S. W.; Palmer, J. D.; Silbert, O.; Slater, M.; Thomas, J. P.; Thompson, P. D.; Typaldos, D.; Watkins, P. M.; Watson, A. T.; Watson, M. F.; Wilson, J. A.] Univ Birmingham, Sch Phys & Astron, Birmingham B15 2TT, W Midlands, England.
   [Akdogan, T.; Arik, E.; Arik, M.; Dogan, O. B.] Bogazici Univ, Fac Sci, Dept Phys, TR-80815 Bebek, Turkey.
   [Cetin, S. A.] Dogus Univ, Fac Arts & Sci, Dept Phys, TR-34722 Istanbul, Turkey.
   [Beddall, A. J.; Beddall, A.; Bingul, A.; Diblen, F.] Gaziantep Univ, Fac Engn, Dept Engn Phys, TR-27310 Sehitkamil, Gaziantep, Turkey.
   [Diblen, F.] Istanbul Tech Univ, Fac Arts & Sci, Dept Phys, TR-34469 Istanbul, Turkey.
   [Antonelli, S.; Bellagamba, L.; Bellomo, M.; Bertin, A.; Bindi, M.; Boscherini, D.; Bruni, A.; Bruni, G.; Bruschi, M.; Caforio, D.; Cambiaghi, M.; Ciocca, C.; Conta, C.; Corradi, M.; De Castro, S.; Di Sipio, R.; Fabbri, L.; Ferrari, P.; Franchino, S.; Fraternali, M.; Gaudio, G.; Giacobbe, B.; Giusti, P.; Semprini-Cesari, N.] Ist Nazl Fis Nucl, Sez Bologna, IT-40127 Bologna, Italy.
   [Antonelli, S.; Bertin, A.; Bindi, M.; Caforio, D.; Cambiaghi, M.; Ciocca, C.; Conta, C.; De Castro, S.; Di Sipio, R.; Fabbri, L.; Franchino, S.; Fraternali, M.; Semprini-Cesari, N.] Univ Bologna, Dipartimento Fis, IT-40127 Bologna, Italy.
   [Ackers, M.; Alhroob, M.; Anders, C. F.; Arutinov, D.; Barbero, M.; Bartsch, D.; Brock, I.; Cammin, J.; Cristinziani, M.; Degenhardt, J.; Desch, K.; Dingfelder, J.; Donega, M.; Dressnandt, N.; Gaycken, G.; Geich-Gimbel, Ch.; Gonella, L.; Hance, M.; Hines, E.; Huegging, F.; Jackson, B.; Janus, M.; Khoriauli, G.; Koffeman, E.; Kroll, J.; Kroseberg, J.; Krueger, H.; Kruth, A.; Kunkle, J.; Lapoire, C.; LeGeyt, B. C.; Lehmacher, M.; Lipeles, E.; Martin, J. P.; Mazur, M.; Moeser, N.; Mueller, K.; Nanava, G.; Nuncio-Quiroz, A. -E.; Hanninger, G. Nunes; Olivito, D.; Peric, I.; Radics, B.; Rottlander, I.; Schmieden, K.; Schmitz, M.; Schumacher, J. W.; Therhaag, J.; Thomson, E.; Tsung, J. -W.; Uchida, K.; Uhlenbrock, M.; Vlasov, N.; Vogel, A.; von Toerne, E.; Wermes, N.; Williams, H. H.; Zendler, C.] Univ Bonn, Inst Phys, D-53115 Bonn, Germany.
   [Ahlen, S. P.; Black, K. M.; Butler, J. M.; Harrington, R. D.; Hazen, E.; Lewandowska, M.; Love, J.; Nation, N. R.; Posch, C.; Sedykh, E.; Seliverstov, D. M.; Shank, J. T.; Whitaker, S. P.; Yan, Z.; Youssef, S. P.] Boston Univ, Dept Phys, Boston, MA 02215 USA.
   [Aefsky, S.; Amelung, C.; Bensinger, J. R.; Blocker, C.; Kirsch, L. E.; Pomeroy, D.; Skvorodnev, N.; Wellenstein, H.] Brandeis Univ, Dept Phys, Waltham, MA 02454 USA.
   [Leite, M. A. L.; Nepomuceno, A. A.; Perantoni, M.] Univ Fed Rio de Janeiro, COPPE EE IF, BR-21945970 Rio De Janeiro, Brazil.
   [Caloba, L. P.; Cerqueira, A. S.; Torres, R. Coura; Mello, A. Da Rocha Gesualdi; Da Silva, P. V. M.; Do Vale, M. A. B.; Seixas, J. M.] Univ Fed Rio de Janeiro, COPPE EE IF, BR-21945970 Rio De Janeiro, Brazil.
   [Donadelli, M.] Brookhaven Natl Lab, Dept Phys, Upton, NY 11973 USA.
   [Alexa, C.; Badescu, E.; Buda, S. I.; Caprini, I.; Caprini, M.; Caramarcu, C.; Ciubancan, M.; Constantinescu, S.; Dita, P.; Dita, S.; Rotaru, M.] Natl Inst Phys & Nucl Engn Bucharest Magurele, R-077125 Bucharest, Romania.
   [Darlea, G. L.] Univ Politehn Bucuresti, Bucharest 060042, Romania.
   [Caramarcu, C.] W Univ Timisoara, Timisoara, Romania.
   [Otero y Garzon, G.; Piegaia, R.; Romeo, G.] Univ Buenos Aires, FCEyN, Dept Fis, RA-1428 Buenos Aires, DF, Argentina.
   [Ask, S.; Barber, T.; Barlow, N.; Batley, J. R.; Brochu, F. M.; Buttinger, W.; Carter, J. R.; Chapman, J. D.; Cowden, C.; French, S. T.; Frost, J. A.; Hill, J. C.; Khoo, T. J.; Lanni, F.; Lester, C. G.; Moeller, V.; Parker, M. A.; Phillips, A. W.; Robinson, D.; Sandoval, T.; Thomson, M.; Ward, C. P.] Univ Cambridge, Cavendish Lab, Cambridge CB3 0HE, England.
   [Archambault, J. P.; Cojocaru, C. D.; Gillberg, D.; Heelan, L.; Khakzad, M.; Liu, C.; McCarthy, T. G.; Oakham, F. G.; Randrianarivony, K.; Ueno, R.; Vincter, M. G.; Whalen, K.] Carleton Univ, Dept Phys, Ottawa, ON K1S 5B6, Canada.
   [Aleksa, M.; Anghinolfi, F.; Bachas, K.; Bachy, G.; Baltasar Dos Santos Pedrosa, F.; Battistin, M.; Bellina, F.; Berge, D.; Bertinelli, F.; Blanchot, G.; Bogaerts, J. A.; Boyd, J.; Braem, A.; Bremer, J.; Burckhart, H.; Butin, F.; Cataneo, F.; Catinaccio, A.; Cattai, A.; Cerri, A.; Chromek-Burckhart, D.; Cook, J.; Cote, D.; Danielsson, H. O.; Dauvergne, J. P.; De Oliveira Branco, M.; Dell'Acqua, A.; Delmastro, M.; Di Girolamo, A.; Di Girolamo, B.; Dittus, F.; Dobson, E.; Drevermann, H.; Dudarev, A.; Dydak, F.; Fabre, C.; Fedorko, I.; Flammer, J.; Foussat, A.; Francis, D.; Froidevaux, D.; Torregrosa, E. Fullana; Gabaldon, C.; Gayde, J-C; Gianotti, F.; Godlewski, J.; Gonidec, A.; Goossens, L.; Gorini, B.; Gorski, B. T.; Haber, C.; Correia, A. M. Henriques; Hervas, L.; Hoecker, A.; Inigo-Golfin, J.; Joram, C.; Kaplon, J.; Knobloch, J.; Koblitz, B.; Koeneke, K.; Kohn, F.; Kollar, D.; La Rosa, A.; Lantzsch, K.; Lasseur, C.; Miotto, G. Lehmann; Lundberg, J.; Magradze, E.; Mapelli, A.; Mapelli, L.; Marchand, J. F.; Marino, C. P.; Martin, B.; Menot, C.; Messina, A.; Molina-Perez, J.; Morley, A. K.; Mornacchi, G.; Nairz, A. M.; Negri, G.; Nicquevert, B.; Pastore, Fr.; Pernegger, H.; Petersen, B. A.; Petersen, J.; Piacquadio, G.; Pommes, K.; Poppleton, A.; Poulard, G.; Pribyl, L.; Prokofiev, K.; Rembser, C.; Dos Santos, D. Roda; Salzburger, A.; Sfyrla, A.; Sloper, J.; Spiriti, E.; Stahlman, J.; Szeless, B.; Tackmann, K.; Tappern, G. P.; Ten Kate, H.; Viegas, F. J. Tique Aires; Torchiani, I.; Treis, J.; Tremblet, L.; Tricoli, A.; Tyrvainen, H.; Unal, G.; van der Poel, E.; van der Ster, D.; Vandoni, G.; Rodriguez, F. Varela; Vinek, E.; Wilkens, H. G.; Winklmeier, F.; Wotschack, J.; Zwalinski, L.] CERN, CH-1211 Geneva 23, Switzerland.
   [Anderson, K. J.; Boveia, A.; Brubaker, E.; Canelli, F.; Choudalakis, G.; Chudoba, J.; Costin, T.; Feng, E. J.; Fiascaris, M.; Gardner, R. W.; Guida, A.; Gusakov, Y.; Plante, I. Jen-La; Kapliy, A.; Melachrinos, C.; Merritt, F. S.; Onyisi, P. U. E.; Oreglia, M. J.; Pilcher, J. E.; Shochet, M. J.; Tuggle, J. M.] Univ Chicago, Enrico Fermi Inst, Chicago, IL 60637 USA.
   [Diaz, M. A.; Maltrana, D. Romero] Pontificia Univ Catolica Chile, Fac Fis, Dept Fis, Santiago, Chile.
   [Brooks, W. K.] Univ Tecn Federico Santa Maria, Dept Fis, Valparaiso, Chile.
   [Bai, Y.; Cheng, S.; Han, H.; Shan, L. Y.] Chinese Acad Sci, Inst High Energy Phys, Beijing 100049, Peoples R China.
   [Gong, C.; Han, L.] Univ Sci & Technol China, Dept Modern Phys, Hefei 230026, Anhui, Peoples R China.
   [Chen, S.; Chen, T.] Nanjing Univ, Dept Phys, Nanjing 210093, Jiangsu, Peoples R China.
   [Feng, C.; Ge, P.; He, M.] Shandong Univ, High Energy Phys Grp, Jinan 250100, Shandong, Peoples R China.
   [Busato, E.; Calvet, D.; Calvet, S.; Cinca, D.; Febbraro, R.; Ghodbane, N.; Grenier, P.; Groh, M.; Pallin, D.; Podlyski, F.; Santoni, C.; Says, L. P.; Vazeille, F.; Viret, S.] Univ Clermont Ferrand, Phys Corpusculaire Lab, Clermont Univ, CNRS,IN2P3, FR-63177 Aubiere, France.
   [Andeen, T.; Angerami, A.; Brooijmans, G.; Cole, B.; Copic, K.; Dodd, J.; Grau, N.; Gray, H. M.; Guicheney, C.; Gupta, A.; Hughes, E. W.; Leltchouk, M.; Mateos, D. Lopez; Parsons, J. A.; Penson, A.; Perez, K.; Reale, V. Perez; Spagnolo, S.; Tuts, P. M.; Urbaniec, D.; Williams, E.; Willis, W.; Wulf, E.; Zitoun, R.] Columbia Univ, Nevis Lab, New York, NY 10533 USA.
   [Boelaert, N.; Dam, M.; Driouichi, C.; Facius, K.; Hansen, J. R.; Hansen, J. B.; Hansen, J. D.; Hansen, P. H.; Jakobsen, S.; Jez, P.; Joergensen, M. D.; Kadlecik, P.; Klinkby, E. B.; Lundquist, J.; Mackeprang, R.; Petersen, T. C.; Rensch, B.; Simonyan, M.; Xella, S.] Univ Copenhagen, Niels Bohr Inst, DK-2100 Copenhagen 0, Denmark.
   [Capua, M.; Crosetti, G.; Fazio, S.] Ist Nazl Fis Nucl, Grp Collegato Cosenza, IT-87036 Arcavacata Di Rende, Italy.
   [Capua, M.; Crosetti, G.; Fazio, S.] Univ Calabria, Dipartimento Fis, IT-87036 Arcavacata Di Rende, Italy.
   [Dabrowski, W.; Dwuznik, M.; Idzik, M.; Jelen, K.; Kisielewska, D.; Koperny, S.; Kowalski, T. Z.; Mindur, B.; Rulikowska-Zarebska, E.; Toczek, B.] AGH Univ Sci & Technol, FPACS, PL-30059 Krakow, Poland.
   [Banas, E.; Blocki, J.; de Renstrom, P. A. Bruckman; Derendarz, D.; Gornicki, E.; Hajduk, Z.; Iwanski, W.; Kaczmarska, A.; Korcyl, K.; Malecki, Pa.; Malecki, P.; Olszewski, A.; Olszowska, J.; Richter-Was, E.; Trzupek, A.; Turala, M.; Wolter, M. W.; Wosiek, B. K.; Zemla, A.] Polish Acad Sci, Henryk Niewodniczanski Inst Nucl Phys, PL-31342 Krakow, Poland.
   [Daya, R. K.; Yagci, K. Dindar; Firan, A.; Goldin, D.; Hadley, D. R.; Hoffman, J.; Ilchenko, Y.; Ishmukhametov, R.; Joffe, D.; Kama, S.; Kasmi, A.; Kehoe, R.; Liang, Z.; Lu, L.; Renkel, P.; Rios, R. R.; Stroynowski, R.; Ye, J.; Zarzhitsky, P.; Zsenei, A.] So Methodist Univ, Dept Phys, Dallas, TX 75275 USA.
   [Ahsan, M.; Galyaev, E.; Izen, J. M.; Lou, X.; Reeves, K.; Werner, M.] Univ Texas Dallas, Richardson, TX 75080 USA.
   [Bechtle, P.; Kuutmann, E. Bergeaas; Boehler, M.; Brandt, G.; Ehrenfeld, W.; Ferrando, J.; Fischer, G.; Glazov, A.; Goebel, M.; Fajardo, L. S. Gomez; Gosdzik, B.; Gregor, I. M.; Hiller, K. H.; Hristova, I.; Husemann, U.; Johnert, S.; Karnevskiy, M.; Katzy, J.; Kono, T.; Lange, C.; Lobodzinska, E.; Ludwig, D.; Martins, P. J. Magalhaes; Medinnis, M.; Mehlhase, S.; Moenig, K.; Naumann, T.; Nozicka, M.; Cavalcanti, T. Perez; Petschull, D.; Placakyte, R.; Qin, Z.; Rubinskiy, I.; Stelzer, H. J.; Terwort, M.; Vankov, P.; Wildt, M. A.; Zhu, H.] DESY, D-22603 Hamburg, Germany.
   [Kuutmann, E. Bergeaas; Brandt, G.; Ferrando, J.; Fischer, G.; Glazov, A.; Gosdzik, B.; Gregor, I. M.; Hiller, K. H.; Hristova, I.; Katzy, J.; Lange, C.; Lobodzinska, E.; Ludwig, D.; Moenig, K.; Petschull, D.; Rubinskiy, I.; Stelzer, H. J.; Zhu, H.] DESY, D-15738 Zeuthen, Germany.
   [Bunse, M.; Dobos, D.; Goessling, C.; Hirsch, F.; Klaiber-Lodewigs, J.; Klingenberg, R.; Krasel, O.; Massa, I.; Muenstermann, D.; Rajek, S.; Reisinger, I.; Walbersloh, J.; Weber, J.; Wunstorf, R.] TU Dortmund, DE-44221 Dortmund, Germany.
   [Pfert, T. Go; Kar, D.; Kobel, M.; Leonhardt, K.; Ludwig, A.; Mader, W. F.; Prudent, X.; Schaarschmidt, J.; Schwierz, R.; Seifert, F.; Stavropoulos, G.; Steinbach, P.; Straessner, A.; Vest, A.] Tech Univ Dresden, Inst Kern & Teilchenphys, D-01069 Dresden, Germany.
   [Arce, A. T. H.; Benjamin, D. P.; Bocci, A.; Fowler, A. J.; Ko, B. R.; Oh, S. H.; Wang, C.; Yamaoka, J.] Duke Univ, Dept Phys, Durham, NC 27708 USA.
   [Buckley, A. G.; Clark, P. J.; O'Brien, B. J.; Wynne, B. M.] Univ Edinburgh, Sch Phys & Astron, Edinburgh EH9 3JZ, Midlothian, Scotland.
   [Sjoelin, J.] Fachhsch Wiener Neustadt, AT-2700 Wiener Neustadt, Austria.
   [Annovi, A.; Antonelli, M.; Bilokon, H.; Cerutti, F.; Curatolo, M.; Esposito, B.; Ferrer, A.; Ferrer, M. L.; Gatti, C.; Laurelli, P.; Maccarrone, G.; Sansoni, A.; Testa, M.; Ventura, S.; Vilucchi, E.; Wen, M.] Ist Nazl Fis Nucl, Lab Nazl Frascati, IT-00044 Frascati, Italy.
   [Abdelalim, A. A.; Alexandre, G.; Backes, M.; Bell, P. J.; Bell, W. H.; Berglund, E.; Blondel, A.; Bucci, F.; Clark, A.; Dao, V.; Efthymiopoulos, I.; Ferrere, D.; Gadomski, S.; Navarro, J. E. Garcia; Gaumer, O.; Gonzalez-Sevilla, S.; Goulette, M. P.; Hamilton, A.; Leger, A.; Lister, A.; Macina, D.; Martinez, M.; Moneta, L.; Herrera, C. Mora; Morone, M-C.; Nektarijevic, S.; Orellana, F.; Pasztor, G.; Pohl, M.; Robichaud-Veronneau, A.; Rosselet, L.; Urquijo, P.; Wu, X.] Univ Geneva, Sect Phys, CH-1211 Geneva 4, Switzerland.
   [Barberis, D.; Beccherle, R.; Caso, C.; Coccaro, A.; Cornelissen, T.; Cuneo, S.; Dameri, M.; Darbo, G.; Parodi, A. Ferretto; Gemme, C.; Rossi, L. P.] Ist Nazl Fis Nucl, Sez Genova, IT-16146 Genoa, Italy.
   [Barberis, D.; Caso, C.; Coccaro, A.; Cornelissen, T.; Cuneo, S.; Dameri, M.; Parodi, A. Ferretto] Univ Genoa, Dipartimento Fis, IT-16146 Genoa, Italy.
   [Chikovani, L.; Djobava, T.; Khubua, J.; Magrath, C. A.; Mchedlidze, G.; Mosidze, M.; Tskhadadze, E. G.] Georgian Acad Sci, Inst Phys, GE-380077 Tbilisi, Rep of Georgia.
   [Chikovani, L.; Djobava, T.; Khubua, J.; Magrath, C. A.; Mchedlidze, G.; Mosidze, M.; Tskhadadze, E. G.] Tbilisi State Univ, HEP Inst, GE-380086 Tbilisi, Rep of Georgia.
   [Astvatsatourov, A.; Duren, M.; Stenzel, H.] Univ Giessen, Inst Phys 2, D-35392 Giessen, Germany.
   [Allwood-Spiers, S. E.; Bates, R. L.; Britton, D.; Bussey, P.; Buttar, C. M.; Collins-Tooth, C.; D'Auria, S.; Doherty, T.; Doyle, A. T.; Fernando, W.; Kenyon, M.; McGlone, H.; Moraes, A.; O'Shea, V.; Barrera, C. Oropeza; Pickford, A.; Robson, A.; Saxon, D. H.; Shaw, C.; Smith, K. M.; Spreitzer, T.; Stavina, P.; Stewart, G. A.; Thompson, A. S.; Wraight, K.; Wright, C.] Univ Glasgow, Dept Phys & Astron, Glasgow G12 8QQ, Lanark, Scotland.
   [Ay, C.; Blumenschein, U.; Brandt, O.; Erdmann, J.; Evangelakou, D.; Grinstein, S.; Groth-Jensen, J.; Guler, H.; Haller, J.; Helary, L.; Henrichs, A.; Hensel, C.; Keil, M.; Knue, A.; Kohriki, T.; Krieger, N.; Kroeninger, K.; Mann, A.; Meyer, J.; Morel, J.; Park, S. J.; Quadt, A.; Roe, A.; Shabalina, E.; Uhrmacher, M.; Weber, P.; Weingarten, J.] Univ Gottingen, Inst Phys 2, D-37077 Gottingen, Germany.
   [Albrand, S.; Andrieux, M-L; Clement, B.; Collot, J.; Crepe-Renaudin, S.; De Saintignon, P.; Delsart, P. A.; Donini, J.; Dzahini, D.; Hostachy, J-Y.; Laisne, E.; Ledroit-Guillon, F.; Lleres, A.; Lucotte, A.; Malek, F.; Martens, F. K.; Martin, T. A.; Polci, F.; Stapnes, S.; Sun, X.; Trocme, B.] CNRS, LPSC, IN2P3, FR-38026 Grenoble, France.
   [Andrieux, M-L; Clement, B.; Collot, J.; Donini, J.; Dzahini, D.; Hostachy, J-Y.; Laisne, E.; Ledroit-Guillon, F.; Lleres, A.; Lucotte, A.; Malek, F.; Martens, F. K.; Polci, F.; Trocme, B.] Univ Grenoble 1, FR-38026 Grenoble, France.
   [Addy, T. N.; Harvey, A.; McFarlane, K. W.; Shin, T.; Vassilakopoulos, V. I.] Hampton Univ, Dept Phys, Hampton, VA 23668 USA.
   [Guimaraes da Costa, J. Barreiro; Belloni, A.; Brandenburg, G. W.; Franklin, M.; Hurst, P.; Huth, J.; Jeanty, L.; Kagan, M.; Kashif, L.; Martyniuk, A. C.; Mikenberg, G.; Mills, C.; Moed, S.; Morii, M.; Prasad, S.; Smith, B. C.; della Porta, G. Zevi] Harvard Univ, Lab Particle Phys & Cosmol, Cambridge, MA 02138 USA.
   [Andrei, V.; Childers, J. T.; Dietzsch, T. A.; Foehlisch, F.; Geweniger, C.; Hanke, P.; Heisterkamp, S.; Schultz-Coulon, H. -C.] Heidelberg Univ, Kirchhoff Inst Phys, D-69120 Heidelberg, Germany.
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   [Behera, P. K.; Limper, M.; Mallik, U.; Schreiner, A.; Zaidan, R.] Univ Iowa, Iowa City, IA 52242 USA.
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   [Anduaga, X. S.; Dova, M. T.; Monticelli, F.; Tripiana, M. F.] Univ Nacl La Plata, FCE, Dept Fis, CONICET, RA-1900 La Plata, Argentina.
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   [Cindro, V.; Dolenc, I.; Filipcic, A.; Gorisek, A.; Kersevan, B. P.; Kramberger, G.; Macek, B.; Mandic, I.; Mikuz, M.; Tykhonov, A.] Jozef Stefan Inst, SI-1000 Ljubljana, Slovenia.
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   [Alam, M. A.; Berry, T.; Boisvert, V.; Boorman, G.; Cooper-Smith, N. J.; Cowan, G.; Edwards, C. A.; George, S.; Goncalo, R.; Hayden, D.; Kilvington, G.; McMahon, T. R.; Misiejuk, A.; Rose, M.; Strong, J. A.; Teixeira-Dias, P.] Queen Mary Univ London, Dept Phys, London E1 4NS, England.
   [Baker, S.; Boser, S.; Butterworth, J. M.; Byatt, T.; Campanelli, M.; Christidi, I. A.; Ciftci, A. K.; Davison, A. R.; Dean, S.; Drohan, J. G.; Jansen, E.; Jones, T. W.; Konstantinidis, N.; Monk, J.; Nash, M.; Nurse, E.; Ozcan, V. E.; Prabhu, R.; Richards, A.; Robinson, J. E. M.; Sherwood, P.; Simmons, B.; Taylor, C.; Waugh, B. M.] Univ London, Dept Phys, Egham TW20 0EX, Surrey, England.
   [Camard, A.; Chareyre, E.; Derue, F.; Imbault, D.; Lacour, D.; Laforge, B.; Vannucci, F.] Univ Paris 07, Phys Theor & Hautes Energies Lab, Univ Paris 06, CNRS,IN2P3, FR-75252 Paris 05, France.
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   [Aharrouche, M.; Bendel, M.; Eckweiler, S.; Edmonds, K.; Ellinghaus, F.; Ertel, E.; Fiedler, F.; Fleckner, J.; Goeringer, C.; Handel, C.; Hohlfeld, M.; Kawamura, G.; Kleinknecht, K.; Koepke, L.; Koevesarki, P.; Lungwitz, M.; Meyer, C.; Moreno, D.; Neusiedl, A.; Rieke, S.; Sander, H. G.; Schmitt, C.; Schroeder, C.; Siragusa, G.; Tapprogge, S.] Johannes Gutenberg Univ Mainz, Inst Phys, DE-55099 Mainz, Germany.
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   [Shimojima, M.; Tanaka, Y.] Nagasaki Inst Appl Sci, Nagasaki 8510193, Japan.
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   [Gallus, P.; Grybel, K.; Guo, B.; Havranek, M.; Hruska, I.; Juranek, V.; Kepka, O.; Kupco, A.; Kus, V.; Kvasnicka, O.; Lipinsky, L.; Lokajicek, M.; Marcisovsky, M.; Myska, M.; Nemecek, S.; Panuskova, M.; Ruzicka, P.; Schovancova, J.; Sicho, P.; Starchenko, E. A.; Tasevsky, M.; Tic, T.; Valenta, J.; Vrba, V.] Acad Sci Czech Republic, Inst Phys, CZ-18221 Prague 8, Czech Republic.
   [Davidek, T.; Dolejsi, J.; Dolezal, Z.; Drasal, Z.; Kodys, P.; Leitner, R.; Novakova, J.; Spiwoks, R.; Strachota, P.; Suk, M.; Sykora, T.; Tas, P.; Valkar, S.; Vorobel, V.; Wilhelm, I.] Charles Univ Prague, Fac Math & Phys, Inst Particle & Nucl Phys, CZ-18000 Prague 8, Czech Republic.
   [Augsten, K.; Holy, T.; Horazdovsky, T.; Hubacek, Z.; Jakubek, J.; Koi, T.; Kral, V.; Krejci, F.; Pospisil, S.; Simak, V.; Slavicek, T.; Smolek, K.; Sodomka, J.; Solar, M.; Soni, N.; Sopko, V.; Stekl, I.; Turecek, D.; Vacek, V.; Vlasak, M.; Vokac, P.] Czech Tech Univ, CZ-16635 Prague 6, Czech Republic.
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   [Benslama, K.; Ju, X.; Ming, Y.; Ortega, E. O.] Univ Regina, Dept Phys, Regina, SK S4S 0A2, Canada.
   [Tanaka, S.] Ritsumeikan Univ, Shiga 5258577, Japan.
   [Anulli, F.; Artoni, G.; Bagnaia, P.; Biglietti, M.; Bini, C.; Borjanovic, I.; Borroni, S.; Caloi, R.; Cavallari, A.; D'Orazio, A.; De Pedis, D.; De Salvo, A.; Dionisi, C.; Falciano, S.; Gentile, S.; Giagu, S.] Ist Nazl Fis Nucl, Sez Roma 1, IT-00185 Rome, Italy.
   [Artoni, G.; Bagnaia, P.; Biglietti, M.; Bini, C.; Borroni, S.; Caloi, R.; Cavallari, A.; D'Orazio, A.; Dionisi, C.; Gentile, S.; Giagu, S.] Univ Roma La Sapienza, Dipartimento Fis, IT-00185 Rome, Italy.
   [Aielli, G.; Camarri, P.; Cardarelli, R.; Cattani, G.; Di Ciaccio, A.; Di Nardo, R.; Di Simone, A.] Ist Nazl Fis Nucl, Sez Roma Tor Vergata, IT-00133 Rome, Italy.
   [Aielli, G.; Camarri, P.; Cattani, G.; Di Ciaccio, A.; Di Nardo, R.; Di Simone, A.] Univ Roma Tor Vergata, Dipartimento Fis, IT-00133 Rome, Italy.
   [Bacci, C.; Baroncelli, A.; Branchini, P.; Ceradini, F.; Di Luise, S.; Farilla, A.; Graziani, E.] Ist Nazl Fis Nucl, Sez Roma Tre, IT-00146 Rome, Italy.
   [Bacci, C.; Ceradini, F.; Di Luise, S.] Univ Roma Tre, Dipartimento Fis, IT-00146 Rome, Italy.
   [Benchekroun, D.; Chafaq, A.; Gouighri, M.; Goujdami, D.] Univ Hassan 2, RUPHE, Fac Sci Ain Chock, Casablanca, Morocco.
   [Hoummada, A.; Ouchrif, M.] CNESTEN, Rabat 10001, Morocco.
   [Derkaoui, J. E.] Univ Mohamed Premier, LPTPM, Fac Sci, Oujda 60000, Morocco.
   [El Moursli, R. Cherkaoui; Ghazlane, H.] Univ Mohammed 5, Fac Sci, Rabat 10000, Morocco.
   [Bachacou, H.; Bauer, F.; Besson, N.; Boonekamp, M.; Chevalier, L.; Chevallier, F.; Ernwein, J.; Etienvre, A. I.; Formica, A.; Gauthier, L.; Giraud, P. F.; Gwenlan, C.; Hassani, S.; Kozanecki, W.; Lancon, E.; Laporte, J. F.; Le Menedeu, E.; Legendre, M.; Lenzi, B.; Mansoulie, B.; Meyer, J-P.; Morange, N.; Nicolaidou, R.; Ouraou, A.; Pomarede, D. M.; Resende, B.; Royon, C. R.; Schune, Ph.; Schwindling, J.; Virchaux, M.] Ctr Etud Saclay, CEA, DSM IRFU, FR-91191 Gif Sur Yvette, France.
   [Bangert, A.; Chouridou, S.; Ciapetti, G.; Damiani, D. S.; Dubbs, T.; Fowler, K.; Hare, G. A.; Litke, A. M.; Lockman, W. S.; Manning, P. M.; Mitrevski, J.; Nielsen, J.; Sadrozinski, H. F-W.; Schumm, B. A.; Seiden, A.; Taylor, G.] Univ Calif Santa Cruz, SCIPP, Santa Cruz, CA 95064 USA.
   [Forbush, D. A.; Goussiou, A. G.; Harris, O. M.; Kuykendall, W.; Lubatti, H. J.; Mockett, P.; Policicchio, A.; Rosati, S.; Rothberg, J.; Ventura, D.; Verducci, M.; Wang, J. C.; Watts, G.; Zhao, T.] Univ Washington, Dept Phys, Seattle, WA 98195 USA.
   [Anastopoulos, C.; Booth, C. N.; Booth, P.; Costanzo, D.; Donszelmann, T. Cuhadar; Dawson, I.; Duxfield, R.; Hodgkinson, M. C.; Hodgson, P.; Johansson, P.; Korolkova, E. V.; Lehto, M.; Mcfayden, J. A.; Nicolas, L.; Owen, S.; Paganis, E.; Sutton, M. R.; Touchard, F.; Tsionou, D.; Tua, A.; Xu, D.] Univ Sheffield, Dept Phys & Astron, Sheffield S3 7RH, S Yorkshire, England.
   [Hasegawa, Y.; Ohshita, H.; Takeshita, T.] Shinshu Univ, Dept Phys, Fac Sci, Matsumoto, Nagano 3908621, Japan.
   [Buchholz, P.; Czirr, H.; Fleck, I.; Gaur, B.; Grivaz, J. -F.; Holder, M.; Ibragimov, I.; Rammes, M.; Sipica, V.; Spurlock, B.; Walkowiak, W.; Zimmermann, S.] Univ Siegen, Fachbereich Phys, D-57068 Siegen, Germany.
   [Dawe, E.; Godfrey, J.; Komaragiri, J. R.; O'Neil, D. C.; Petteni, M.; Schouten, D.; Stelzer, B.; Trottier-McDonald, M.; Vetterli, M. C.] Simon Fraser Univ, Dept Phys, Burnaby, BC V5A 1S6, Canada.
   [Aracena, I.; Barklow, T.; Bartoldus, R.; Bawa, H. S.; Butler, B.; Cogan, J. G.; Gao, Y. S.; Haas, S.; Hansson, P.; Horn, C.; Jackson, P.; Kenney, C. J.; Kim, P. C.; Kocian, M.; Lowe, A. J.; Miller, D. W.; Mount, R.; Nelson, S.; Nelson, T. K.; Salnikov, A.; Schwartzman, A.; Silverstein, D.; Smith, D.; Strauss, E.; Su, D.; Wilson, M. G.; Wittgen, M.; Young, C.] SLAC Natl Accelerator Lab, Stanford, CA 94309 USA.
   [Batkova, L.; Federic, P.; Zilka, B.] Comenius Univ, Fac Math Phys & Informat, SK-84248 Bratislava, Slovakia.
   [Antos, J.; Bruncko, D.; Fenyuk, A. B.; Seman, M.] Slovak Acad Sci, Inst Expt Phys, Dept Subnucl Phys, SK-04353 Kosice, Slovakia.
   [Leney, K. J. C.; Vickey, T.] Univ Johannesburg, Dept Phys, ZA-2006 Johannesburg, South Africa.
   [Leney, K. J. C.; Vickey, T.] Univ Witwatersrand, Sch Phys, ZA-2050 Johannesburg, Johannesburg, South Africa.
   [Asman, B.; Bohm, C.; Clement, C.; Eriksson, D.; Gellerstedt, K.; Hellman, S.; Hidvegi, A.; Holmgren, S. O.; Johansen, M.; Johansson, K. E.; Jon-And, K.; Lesser, J.; Mikulec, B.; Milstead, D. A.; Moa, T.; Nordkvist, B.; Ohm, C. C.; Ramstedt, M.; Sellden, B.; Silverstein, S. B.; Sjoelin, J.; Strandberg, S.; Tylmad, M.; Yang, Z.] Stockholm Univ, Dept Phys, S-10691 Stockholm, Sweden.
   [Asman, B.; Clement, C.; Gellerstedt, K.; Hellman, S.] Oskar Klein Ctr, SE-10691 Stockholm, Sweden.
   [Grahn, K-J; Lund-Jensen, B.] Royal Inst Technol KTH, Dept Phys, SE-10691 Stockholm, Sweden.
   [Ahmad, A.; Caputo, R.; Deluca, C.; Devetak, E.; DeWilde, B.; Engelmann, R.; Farley, J.; Goodson, J. J.; Grassi, V.; Gray, J. A.; Hobbs, J.; Khodinov, A.; McCarthy, R. L.; Mohapatra, S.; Rijssenbeek, M.; Schamberger, R. D.; Stupak, J.; Tsybychev, D.; Yurkewicz, A.] SUNY Stony Brook, Dept Phys & Astron, Stony Brook, NY 11794 USA.
   [De Santo, A.; Potter, C. J.; Salvatore, F.] Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, E Sussex, England.
   [Lee, J. S. H.; Patel, N.; Saavedra, A. F.; Varvell, K. E.; Waugh, A. T.; Yabsley, B.] Univ Sydney, Sch Phys, Sydney, NSW 2006, Australia.
   [Hou, S.; Lee, S. C.; Lin, S. C.; Liu, D.; Mazini, R.; Meng, Z.; Ren, Z. L.; Soh, D. A.; Teng, P. K.; Wang, J.; Wang, S. M.; Weng, Z.; Zhong, J.; Zhou, Y.] Acad Sinica, Inst Phys, Taipei 11529, Taiwan.
   [Harpaz, S. Behar; Ben Ami, S.; Bressler, S.; Hershenhorn, A. D.; Kajomovitz, E.; Landsman, H.; Lifshitz, R.; Rozen, Y.; Tarem, S.; Tennenbaum-Katan, Y. D.; Vallecorsa, S.] Technion Israel Inst Technol, Dept Phys, IL-32000 Haifa, Israel.
   [Abramowicz, H.; Alexander, G.; Amram, N.; Bella, G.; Benary, O.; Benhammou, Y.; Brodet, E.; Etzion, E.; Gershon, A.; Ginzburg, J.; Gutzwiller, O.; Hod, N.; Kreisel, A.; Mahboubi, K.; Munwes, Y.; Oren, Y.; Reinherz-Aronis, E.; Sadeh, I.; Silver, Y.; Soffer, A.; Taiblum, N.; Urkovsky, E.] Tel Aviv Univ, Raymond & Beverly Sackler Sch Phys & Astron, IL-69978 Tel Aviv, Israel.
   [Iliadis, D.; Kordas, K.; Nomidis, I.; Petridis, A.; Petridou, C.; Sampsonidis, D.] Aristotle Univ Thessaloniki, Div Nucl & Particle Phys, Fac Sci, Dept Phys, GR-54124 Thessaloniki, Greece.
   [Akimoto, G.; Asai, S.; Azuma, Y.; Dohmae, T.; Imori, M.; Isobe, T.; Kanaya, N.; Kaneda, M.; Kataoka, Y.; Kawamoto, T.; Kessoku, K.; Kobayashi, T.; Kubota, T.; Mashinistov, R.; Mathes, M.; Matsunaga, H.; Matsushita, T.; Nakamura, K.; Ninomiya, Y.; Nomoto, H.; Oda, S.; Okuyama, T.; Sakamoto, H.; Tanaka, J.; Terashi, K.; Ueda, I.; Yamamoto, S.; Yamamura, T.; Yamazaki, T.] Univ Tokyo, Int Ctr Elementary Particle Phys, Bunkyo Ku, Tokyo 1130033, Japan.
   [Bratzler, U.; Fukunaga, C.] Univ Tokyo, Dept Phys, Bunkyo Ku, Tokyo 1130033, Japan.
   [Jinnouchi, O.; Kanno, T.; Kuze, M.] Tokyo Metropolitan Univ, Grad Sch Sci & Technol, Tokyo 1920397, Japan.
   [Bailey, D. C.; Bain, T.; Beare, B.; Brelier, B.; Montero, S. Carron; Cheung, S. L.; Deviveiros, P. O.; Dhaliwal, S.; Farooque, T.; Fatholahzadeh, B.; Gibson, A.; Guarino, V. J.; Guo, J.; Jankowski, E.; Joo, K. K.; Krieger, P.; Le Maner, C.; Orr, R. S.; Rezvani, R.; Rosenbaum, G. A.; Sandhu, P.; Savard, P.; Sinervo, P.; Spousta, M.; Tardif, D.; Teuscher, R. J.; Thompson, P. D.; Trischuk, W.] Tokyo Inst Technol, Dept Phys, Meguro Ku, Tokyo 1528551, Japan.
   [Losty, M. J.; Nugent, I. M.; Oram, C. J.; Stelzer-Chilton, O.; Tafirout, R.; Taylor, W.; Trigger, I. M.] Univ Toronto, Dept Phys, Toronto, ON M5S 1A7, Canada.
   [Canepa, A.; Caron, B.; Chekulaev, S. V.; Fortin, D.] TRIUMF, Vancouver, BC V6T 2A3, Canada.
   [Nugent, I. M.; Oram, C. J.; Trigger, I. M.] York Univ, Dept Phys & Astron, Toronto, ON M3J 1P3, Canada.
   [Hara, K.; Kim, S. H.; Kurata, M.; Nagai, K.; Ukegawa, F.] Univ Tsukuba, Inst Pure & Appl Sci, Tsukuba, Ibaraki 3058571, Japan.
   [Hamilton, S.; Napier, A.; Rolli, S.; Sliwa, K.; Todorova-Nova, S.] Tufts Univ, Ctr Sci & Technol, Medford, MA 02155 USA.
   [Losada, M.; Loureiro, K. F.; Navas, L. Mendoza; Navarro, G.; Rodriguez, D.] Univ Antonio Narino, Ctr Invest, Bogota, Colombia.
   [Benedict, B. H.; Bold, T.; Ciobotaru, M. D.; Deng, J.; Dobson, M.; Eschrich, I. Gough; Grabowska-Bold, I.; Hawkins, D.; Lankford, A. J.; Okawa, H.; Porter, R.; Scannicchio, D. A.; Taffard, A.; Toggerson, B.; Unel, G.; Werth, M.; Wheeler-Ellis, S. J.; Whiteson, D.; Zhou, N.] Univ Calif Irvine, Dept Phys & Astron, Irvine, CA 92697 USA.
   [Acharya, B. S.; De Lotto, B.; Pinamonti, M.; Shaw, K.; Suruliz, K.] Ist Nazl Fis Nucl, Grp Collegato Udine, IT-33100 Udine, Italy.
   [Acharya, B. S.; De Lotto, B.] Abdus Salaam Int Ctr Theoret Phys, IT-34014 Trieste, Italy.
   [Cobal, M.; De Sanctis, U.; Del Papa, C.] Univ Udine, Dipartimento Fis, IT-33100 Udine, Italy.
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   [Belanger-Champagne, C.; Brenner, R.; Buszello, C. P.; Ekelof, T.; Ellert, M.; Ferrara, V.; Hansen, C. J.] Uppsala Univ, Dept Phys & Astron, SE-75120 Uppsala, Sweden.
   [Amoros, G.; Urban, S. Cabrera; Gimenez, V. Castillo; Costa, M. J.; Escobar, C.; Ferrari, R.; Fuster, J.; Garcia, C.; Gonzalez de la Hoz, S.; Hernandez Jimenez, Y.; Higon-Rodriguez, E.; Quiles, A. Irles; Kaci, M.; Lacasta, C.; Lacuesta, V. R.; Minano, M.; Mitsou, V. A.; Moles-Valls, R.; Llacer, M. Moreno; Garcia, E. Oliver; Perez Garcia-Estan, M. T.; Ros, E.; Salt, J.; Solans, C. A.; Solc, J.; Sanchez, J.; Pastor, E. Torro; Gallego, E. Valladolid; Ferrer, J. A. Valls; Perez, M. Villaplana; Vos, M.; Wildauer, A.] Ctr Mixto UVEG CSIC, IFIC, ES-46071 Valencia, Spain.
   [Amoros, G.; Urban, S. Cabrera; Gimenez, V. Castillo; Costa, M. J.; Escobar, C.; Ferrari, R.; Fuster, J.; Garcia, C.; Gonzalez de la Hoz, S.; Hernandez Jimenez, Y.; Higon-Rodriguez, E.; Quiles, A. Irles; Kaci, M.; Lacasta, C.; Lacuesta, V. R.; Minano, M.; Mitsou, V. A.; Moles-Valls, R.; Llacer, M. Moreno; Garcia, E. Oliver; Perez Garcia-Estan, M. T.; Ros, E.; Salt, J.; Solans, C. A.; Solc, J.; Sanchez, J.; Pastor, E. Torro; Gallego, E. Valladolid; Ferrer, J. A. Valls; Perez, M. Villaplana; Vos, M.; Wildauer, A.] Univ Valencia, Dept Ingn Elect, Bellaterra 08193, Spain.
   [Axen, D.; Gay, C.; Loh, C. W.; Mijovic, L.; Mills, W. J.; Muir, A.; Swedish, S.; Viel, S.] Inst Microelect Barcelona IMB CNM CSIC, Bellaterra 08193, Spain.
   [Astbury, A.; Banerjee, Sw.; Bansal, V.; Berghaus, F.; Courneyea, L.; Fincke-Keeler, M.; Keeler, R.; Kowalewski, R.; Lefebvre, M.; Lessard, J-R.; McPherson, R. A.; Plamondon, M.; Sobie, R.] Univ British Columbia, Dept Phys, Vancouver, BC V6T 1Z1, Canada.
   [Kimura, N.; Yorita, K.] Univ Victoria, Dept Phys & Astron, Victoria, BC V8W 3P6, Canada.
   [Kimura, N.; Yorita, K.] Waseda Univ, WISE, Shinjuku Ku, Tokyo 169855, Japan.
   [Alon, R.; Barak, L.; Duchovni, E.; Frank, T.; Gabizon, O.; Grimm, K.; Klier, A.; Lellouch, D.; Levinson, L. J.; Mikestikova, M.; Milov, A.; Milstein, D.; Roth, I.; Silbert, O.; Smakhtin, V.; Vitells, O.] Weizmann Inst Sci, Dept Particle Phys, IL-76100 Rehovot, Israel.
   [Asfandiyarov, R.; Montoya, G. D. Carrillo; Hernandez, A. M. Castaneda; Castaneda-Miranda, E.; Chen, X.; Dos Anjos, A.; Fang, Y.; Fasching, D.; Ferencei, J.; Castillo, L. R. Flores; Gonzalez, S.; Guyot, C.; Ji, H.; Cheong, A. Leung Fook; Li, H.; Ma, L. L.; Garcia, B. R. Mellado; Pan, Y. B.; Pataraia, S.; Morales, M. I. Pedraza; Peng, H.; Poveda, J.; Quayle, W. B.; Sarangi, T.; Wang, H.; Wiedenmann, W.; Wu, S. L.; Zhu, Y.; Zmouchko, V. V.] Univ Wisconsin, Dept Phys, Madison, WI 53706 USA.
   [Fleischmann, P.; Meyer, J.; Redelbach, A.; Stroehmer, R.; Traynor, D.] Univ Wurzburg, Inst Phys, D-97074 Wurzburg, Germany.
   [Barisonzi, M.; Becks, K. H.; Boek, J.; Braun, H. M.; Dopke, J.; Drees, J.; Flick, T.; Gerlach, P.; Glitza, K. W.; Gorfine, G.; Grah, C.; Hamacher, K.; Harenberg, T.; Henss, T.; Hirschbuehl, D.; Imhaeuser, M.; Kalinin, S.; Kersten, S.; Kootz, A.; Kuhl, T.; Lenz, T.; Lenzen, G.; Maettig, P.; Mechtel, M.; Sandhoff, M.; Sandvoss, S.; Sartisohn, G.; Schuler, G.; Siebel, A.; Sturm, P.; Thadome, J.; Voss, T. T.; Wagner, W.; Wahlen, H.; Wicke, D.; Zeitnitz, C.] Berg Univ Gesamthsch Wuppertal, Fachbereich C, D-42097 Wuppertal, Germany.
   [Adelman, J.; Atoian, G.; Auerbach, B.; Baker, O. K.; Almenar, C. Cuenca; Demers, S.; Garberson, F.; Golling, T.; Hsu, P. J.; Kaplan, B.; Lee, L., Jr.; Lockwitz, S.; Loginov, A.; Marin, A.; Martin, A. J.; Schmidt, M. P.; Sherman, D.; Thioye, M.; Tipton, P.; Wall, R.; Zeller, M.] Yale Univ, Dept Phys, New Haven, CT 06520 USA.
   [Grabski, V.; Hakobyan, H.] Yerevan Phys Inst, AM-375036 Yerevan, Armenia.
   [Biscarat, C.; Cogneras, E.; Rahal, G.] Ctr Calcul CNRS IN2P3, F-69622 Villeurbanne, France.
   LIP, Oporto, Portugal.
RP Aad, G (reprint author), Univ Freiburg, Fak Math & Phys, Hermann Herder Str 3, D-79104 Freiburg, Germany.
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   Sergey/J-6722-2014; Conde Muino, Patricia/F-7696-2011; Boyko,
   Igor/J-3659-2013; Kuleshov, Sergey/D-9940-2013; Anjos, Nuno/I-3918-2013;
   Kartvelishvili, Vakhtang/K-2312-2013; Dawson, Ian/K-6090-2013; Solfaroli
   Camillocci, Elena/J-1596-2012; Castro, Nuno/D-5260-2011; Wolters,
   Helmut/M-4154-2013; Jones, Roger/H-5578-2011; Warburton,
   Andreas/N-8028-2013; De, Kaushik/N-1953-2013; Di Nardo,
   Roberto/J-4993-2012; Della Pietra, Massimo/J-5008-2012; Andreazza,
   Attilio/E-5642-2011; Cascella, Michele/B-6156-2013; messina,
   andrea/C-2753-2013; Amorim, Antonio/C-8460-2013; Orlov,
   Ilya/E-6611-2012; Annovi, Alberto/G-6028-2012; Brooks,
   William/C-8636-2013; Pina, Joao /C-4391-2012; Vanyashin,
   Aleksandr/H-7796-2013; Casadei, Diego/I-1785-2013; La Rosa,
   Alessandro/I-1856-2013; Idzik, Marek/A-2487-2017; Mashinistov,
   Ruslan/M-8356-2015; Solodkov, Alexander/B-8623-2017; Zaitsev,
   Alexandre/B-8989-2017; Yang, Haijun/O-1055-2015; Monzani,
   Simone/D-6328-2017
OI Smirnov, Sergei/0000-0002-6778-073X; Gladilin,
   Leonid/0000-0001-9422-8636; Moorhead, Gareth/0000-0002-9299-9549;
   Petrucci, Fabrizio/0000-0002-5278-2206; Wemans,
   Andre/0000-0002-9669-9500; Fabbri, Laura/0000-0002-4002-8353; Kuzhir,
   Polina/0000-0003-3689-0837; Delmastro, Marco/0000-0003-2992-3805;
   Veneziano, Stefano/0000-0002-2598-2659; spagnolo,
   stefania/0000-0001-7482-6348; Ferrando, James/0000-0002-1007-7816;
   Rotaru, Marina/0000-0003-3303-5683; Takai, Helio/0000-0001-9253-8307;
   Britton, David/0000-0001-9998-4342; valente, paolo/0000-0002-5413-0068;
   Moraes, Arthur/0000-0002-5157-5686; Perrino,
   Roberto/0000-0002-5764-7337; Stoicea, Gabriel/0000-0002-7511-4614;
   Doyle, Anthony/0000-0001-6322-6195; Samset, Bjorn
   H./0000-0001-8013-1833; Olshevskiy, Alexander/0000-0002-8902-1793;
   Casado, Pilar/0000-0002-0394-5646; Mora Herrera, Maria
   Clemencia/0000-0003-3915-3170; Maneira, Jose/0000-0002-3222-2738;
   Prokoshin, Fedor/0000-0001-6389-5399; KHODINOV,
   ALEKSANDR/0000-0003-3551-5808; Morone, Maria
   Cristina/0000-0002-0200-0632; Goncalo, Ricardo/0000-0002-3826-3442;
   Canelli, Florencia/0000-0001-6361-2117; Battistoni,
   Giuseppe/0000-0003-3484-1724; Gorelov, Igor/0000-0001-5570-0133; Booth,
   Christopher/0000-0002-6051-2847; Gonzalez de la Hoz,
   Santiago/0000-0001-5304-5390; Guo, Jun/0000-0001-8125-9433; Smirnova,
   Oxana/0000-0003-2517-531X; Aguilar Saavedra, Juan
   Antonio/0000-0002-5475-8920; Leyton, Michael/0000-0002-0727-8107;
   Pacheco Pages, Andres/0000-0001-8210-1734; Vranjes Milosavljevic,
   Marija/0000-0003-4477-9733; SULIN, VLADIMIR/0000-0003-3943-2495;
   Martins, Paulo/0000-0003-3753-3751; Mir,
   Lluisa-Maria/0000-0002-4276-715X; Riu, Imma/0000-0002-3742-4582; Ferrer,
   Antonio/0000-0003-0532-711X; Hansen, John/0000-0002-8422-5543;
   Grancagnolo, Sergio/0000-0001-8490-8304; Tikhomirov,
   Vladimir/0000-0002-9634-0581; Camarri, Paolo/0000-0002-5732-5645;
   Santamarina Rios, Cibran/0000-0002-9810-1816; Bosman,
   Martine/0000-0002-7290-643X; Nasteva, Irina/0000-0001-7115-7214;
   Grinstein, Sebastian/0000-0002-6460-8694; Lei,
   Xiaowen/0000-0002-2564-8351; Ventura, Andrea/0000-0002-3368-3413; Livan,
   Michele/0000-0002-5877-0062; Mitsou, Vasiliki/0000-0002-1533-8886;
   CARPENTIERI, CARMELA/0000-0002-2994-0317; Joergensen,
   Morten/0000-0002-6790-9361; O'Shea, Val/0000-0001-7183-1205; Lee,
   Jason/0000-0002-2153-1519; Villa, Mauro/0000-0002-9181-8048;
   Mikestikova, Marcela/0000-0003-1277-2596; Peleganchuk,
   Sergey/0000-0003-0907-7592; Conde Muino, Patricia/0000-0002-9187-7478;
   Boyko, Igor/0000-0002-3355-4662; Kuleshov, Sergey/0000-0002-3065-326X;
   Solfaroli Camillocci, Elena/0000-0002-5347-7764; Castro,
   Nuno/0000-0001-8491-4376; Wolters, Helmut/0000-0002-9588-1773; Jones,
   Roger/0000-0002-6427-3513; Warburton, Andreas/0000-0002-2298-7315; De,
   Kaushik/0000-0002-5647-4489; Della Pietra, Massimo/0000-0003-4446-3368;
   Andreazza, Attilio/0000-0001-5161-5759; Cascella,
   Michele/0000-0003-2091-2501; Orlov, Ilya/0000-0003-4073-0326; Annovi,
   Alberto/0000-0002-4649-4398; Brooks, William/0000-0001-6161-3570; Pina,
   Joao /0000-0001-8959-5044; Vanyashin, Aleksandr/0000-0002-0367-5666; La
   Rosa, Alessandro/0000-0001-6291-2142; Mashinistov,
   Ruslan/0000-0001-7925-4676; Solodkov, Alexander/0000-0002-2737-8674;
   Zaitsev, Alexandre/0000-0002-4961-8368; Monzani,
   Simone/0000-0002-0479-2207
FU ANPCyT, Argentina; YerPhI, Armenia; ARC, Australia; BMWF, Austria; ANAS,
   Azerbaijan; SSTC, Belarus; CNPq; FAPESP, Brazil; NSERC; NRC; CFI,
   Canada; CERN; CONICYT, Chile; CAS; MOST; NSFC, China; COLCIENCIAS,
   Colombia; MEYS (MSMT); MPO; CCRC, Czech Republic; DNRF; DNSRC; Lundbeck
   Foundation, Denmark; ARTEMIS; European Union; IN2P3-CNRS; CEA-DSM/IRFU,
   France; GNAS, Georgia; BMBF; DFG; HGF; MPG; AvH Foundation, Germany;
   GSRT, Greece; ISF; MINERVA; GIF; DIP; Benoziyo Center, Israel; INFN,
   Italy; MEXT; JSPS, Japan; CNRST, Morocco; FOM; NWO, The Netherlands;
   RCN, Norway; MNiSW, Poland; GRICES; FCT, Portugal; MERYS (MECTS),
   Romania; MES of Russia; ROSATOM, Russian Federation; JINR; MSTD, Serbia;
   MSSR, Slovakia; ARRS; MVZT, Slovenia; DST/NRF, South Africa; MICINN,
   Spain; SRC; Wallenberg Foundation, Sweden; SER; SNSF; Cantons of Bern
   and Geneva, Switzerland; NSC, Taiwan; TAEK, Turkey; STFC; Royal Society;
   Leverhulme Trust, United Kingdom; DOE; NSF, USA
FX We thank CERN for the efficient commissioning and operation of the LHC
   during this initial high-energy data-taking period as well as the
   support staff from our institutions without whom ATLAS could not be
   operated efficiently. We acknowledge the support of ANPCyT, Argentina;
   YerPhI, Armenia; ARC, Australia; BMWF, Austria; ANAS, Azerbaijan; SSTC,
   Belarus; CNPq and FAPESP, Brazil; NSERC, NRC, and CFI, Canada; CERN;
   CONICYT, Chile; CAS, MOST, and NSFC, China; COLCIENCIAS, Colombia; MEYS
   (MSMT), MPO, and CCRC, Czech Republic; DNRF, DNSRC, and Lundbeck
   Foundation, Denmark; ARTEMIS, European Union; IN2P3-CNRS and
   CEA-DSM/IRFU, France; GNAS, Georgia; BMBF, DFG, HGF, MPG, and AvH
   Foundation, Germany; GSRT, Greece; ISF, MINERVA, GIF, DIP, and Benoziyo
   Center, Israel; INFN, Italy; MEXT and JSPS, Japan; CNRST, Morocco; FOM
   and NWO, The Netherlands; RCN, Norway; MNiSW, Poland; GRICES and FCT,
   Portugal; MERYS (MECTS), Romania; MES of Russia and ROSATOM, Russian
   Federation; JINR; MSTD, Serbia; MSSR, Slovakia; ARRS and MVZT, Slovenia;
   DST/NRF, South Africa; MICINN, Spain; SRC and Wallenberg Foundation,
   Sweden; SER, SNSF, and Cantons of Bern and Geneva, Switzerland; NSC,
   Taiwan; TAEK, Turkey; STFC, the Royal Society, and Leverhulme Trust,
   United Kingdom; DOE and NSF, USA. The crucial computing support from all
   WLCG partners is acknowledged gratefully, in particular, from CERN and
   the ATLAS Tier-1 facilities at TRIUMF (Canada), NDGF (Denmark, Norway,
   and Sweden), CC-IN2P3 (France), KIT/GridKA (Germany), INFN-CNAF (Italy),
   NL-T1 (The Netherlands), PIC (Spain), ASGC (Taiwan), RAL (United
   Kingdom), and BNL (USA) and in the Tier-2 facilities worldwide.
NR 12
TC 394
Z9 395
U1 18
U2 221
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 13
PY 2010
VL 105
IS 25
AR 252303
DI 10.1103/PhysRevLett.105.252303
PG 18
WC Physics, Multidisciplinary
SC Physics
GA 713PR
UT WOS:000286750400009
PM 21231581
ER

PT J
AU Aaltonen, T
   Gonzalez, BA
   Amerio, S
   Amidei, D
   Anastassov, A
   Annovi, A
   Antos, J
   Apollinari, G
   Appel, JA
   Apresyan, A
   Arisawa, T
   Artikov, A
   Asaadi, J
   Ashmanskas, W
   Auerbach, B
   Aurisano, A
   Azfar, F
   Badgett, W
   Barbaro-Galtieri, A
   Barnes, VE
   Barnett, BA
   Barria, P
   Bartos, P
   Bauce, M
   Bauer, G
   Bedeschi, F
   Beecher, D
   Behari, S
   Bellettini, G
   Bellinger, J
   Benjamin, D
   Beretvas, A
   Bhatti, A
   Binkley, M
   Bisello, D
   Bizjak, I
   Bland, KR
   Blocker, C
   Blumenfeld, B
   Bocci, A
   Bodek, A
   Bortoletto, D
   Boudreau, J
   Boveia, A
   Brau, B
   Brigliadori, L
   Brisuda, A
   Bromberg, C
   Brucken, E
   Bucciantonio, M
   Budagov, J
   Budd, HS
   Budd, S
   Burkett, K
   Busetto, G
   Bussey, P
   Buzatu, A
   Cabrera, S
   Calancha, C
   Camarda, S
   Campanelli, M
   Campbell, M
   Canelli, F
   Canepa, A
   Carls, B
   Carlsmith, D
   Carosi, R
   Carrillo, S
   Carron, S
   Casal, B
   Casarsa, M
   Castro, A
   Catastini, P
   Cauz, D
   Cavaliere, V
   Cavalli-Sforza, M
   Cerri, A
   Cerrito, L
   Chen, YC
   Chertok, M
   Chiarelli, G
   Chlachidze, G
   Chlebana, F
   Cho, K
   Chokheli, D
   Chou, JP
   Chung, WH
   Chung, YS
   Ciobanu, CI
   Ciocci, MA
   Clark, A
   Clark, D
   Compostella, G
   Convery, ME
   Conway, J
   Corbo, M
   Cordelli, M
   Cox, CA
   Cox, DJ
   Crescioli, F
   Almenar, CC
   Cuevas, J
   Culbertson, R
   Dagenhart, D
   d'Ascenzo, N
   Datta, M
   de Barbaro, P
   De Cecco, S
   De Lorenzo, G
   Dell'Orso, M
   Deluca, C
   Demortier, L
   Deng, J
   Deninno, M
   Devoto, F
   d'Errico, M
   Di Canto, A
   Di Ruzza, B
   Dittmann, JR
   D'Onofrio, M
   Donati, S
   Dong, P
   Dorigo, T
   Ebina, K
   Elagin, A
   Eppig, A
   Erbacher, R
   Errede, D
   Errede, S
   Ershaidat, N
   Eusebi, R
   Fang, HC
   Farrington, S
   Feindt, M
   Fernandez, JP
   Ferrazza, C
   Field, R
   Flanagan, G
   Forrest, R
   Frank, MJ
   Franklin, M
   Freeman, JC
   Furic, I
   Gallinaro, M
   Galyardt, J
   Garcia, JE
   Garfinkel, AF
   Garosi, P
   Gerberich, H
   Gerchtein, E
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AF Aaltonen, T.
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   Amidei, D.
   Anastassov, A.
   Annovi, A.
   Antos, J.
   Apollinari, G.
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   Apresyan, A.
   Arisawa, T.
   Artikov, A.
   Asaadi, J.
   Ashmanskas, W.
   Auerbach, B.
   Aurisano, A.
   Azfar, F.
   Badgett, W.
   Barbaro-Galtieri, A.
   Barnes, V. E.
   Barnett, B. A.
   Barria, P.
   Bartos, P.
   Bauce, M.
   Bauer, G.
   Bedeschi, F.
   Beecher, D.
   Behari, S.
   Bellettini, G.
   Bellinger, J.
   Benjamin, D.
   Beretvas, A.
   Bhatti, A.
   Binkley, M.
   Bisello, D.
   Bizjak, I.
   Bland, K. R.
   Blocker, C.
   Blumenfeld, B.
   Bocci, A.
   Bodek, A.
   Bortoletto, D.
   Boudreau, J.
   Boveia, A.
   Brau, B.
   Brigliadori, L.
   Brisuda, A.
   Bromberg, C.
   Brucken, E.
   Bucciantonio, M.
   Budagov, J.
   Budd, H. S.
   Budd, S.
   Burkett, K.
   Busetto, G.
   Bussey, P.
   Buzatu, A.
   Cabrera, S.
   Calancha, C.
   Camarda, S.
   Campanelli, M.
   Campbell, M.
   Canelli, F.
   Canepa, A.
   Carls, B.
   Carlsmith, D.
   Carosi, R.
   Carrillo, S.
   Carron, S.
   Casal, B.
   Casarsa, M.
   Castro, A.
   Catastini, P.
   Cauz, D.
   Cavaliere, V.
   Cavalli-Sforza, M.
   Cerri, A.
   Cerrito, L.
   Chen, Y. C.
   Chertok, M.
   Chiarelli, G.
   Chlachidze, G.
   Chlebana, F.
   Cho, K.
   Chokheli, D.
   Chou, J. P.
   Chung, W. H.
   Chung, Y. S.
   Ciobanu, C. I.
   Ciocci, M. A.
   Clark, A.
   Clark, D.
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   Convery, M. E.
   Conway, J.
   Corbo, M.
   Cordelli, M.
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CA CDF Collaboration
TI Improved Search for a Higgs Boson Produced in Association with Z ->
   l(+)l(-) in p(p)over-bar Collisions at root s=1.96 TeV
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID STANDARD MODEL; DECAYS; JET
AB We search for the standard model Higgs boson produced with a Z boson in 4: 1 fb(-1) of integrated luminosity collected with the CDF II detector at the Tevatron. In events consistent with the decay of the Higgs boson to a bottom-quark pair and the Z boson to electrons or muons, we set 95% credibility level upper limits on the ZH production cross section multiplied by the H -> b (b) over bar branching ratio. Improved analysis methods enhance signal sensitivity by 20% relative to previous searches. At a Higgs boson mass of 115 GeV/c(2) we set a limit of 5.9 times the standard model cross section.
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   [Barria, P.; Bedeschi, F.; Bellettini, G.; Bucciantonio, M.; Carosi, R.; Cavaliere, V.; Chiarelli, G.; Ciocci, M. A.; Crescioli, F.; Dell'Orso, M.; Di Canto, A.; Di Ruzza, B.; Donati, S.; Ferrazza, C.; Garosi, P.; Giannetti, P.; Giunta, M.; Introzzi, G.; Lami, S.; Latino, G.; Leo, S.; Leone, S.; Menzione, A.; Piacentino, G.; Punzi, G.; Ristori, L.; Ruffini, F.; Sartori, L.; Scribano, A.; Scuri, F.; Sforza, F.; Trovato, M.; Turini, N.; Vataga, E.; Volpi, G.] Ist Nazl Fis Nucl Pisa, I-56127 Pisa, Italy.
   [Bellettini, G.; Bucciantonio, M.; Crescioli, F.; Dell'Orso, M.; Di Canto, A.; Donati, S.; Leo, S.; Punzi, G.; Sforza, F.; Volpi, G.] Univ Pisa, I-56127 Pisa, Italy.
   [Barria, P.; Cavaliere, V.; Ciocci, M. A.; Garosi, P.; Latino, G.; Ruffini, F.; Scribano, A.; Turini, N.] Univ Siena, I-56127 Pisa, Italy.
   [Ferrazza, C.; Trovato, M.; Vataga, E.] Scuola Normale Super Pisa, I-56127 Pisa, Italy.
   [Boudreau, J.; Gibson, K.; Liu, C.; Rahaman, A.; Shepard, P. F.] Univ Pittsburgh, Pittsburgh, PA 15260 USA.
   [Apresyan, A.; Barnes, V. E.; Bortoletto, D.; Flanagan, G.; Garfinkel, A. F.; Jones, M.; Laasanen, A. T.; Liu, Q.; Margaroli, F.; Potamianos, K.; Ranjan, N.; Sedov, A.] Purdue Univ, W Lafayette, IN 47907 USA.
   [Bodek, A.; Budd, H. S.; Chung, Y. S.; de Barbaro, P.; Han, J. Y.; McFarland, K. S.; Sakumoto, W. K.] Univ Rochester, Rochester, NY 14627 USA.
   [Bhatti, A.; Demortier, L.; Gallinaro, M.; Goulianos, K.; Lungu, G.; Malik, S.; Mesropian, C.] Rockefeller Univ, New York, NY 10065 USA.
   [De Cecco, S.; Giagu, S.; Iori, M.; Mastrandrea, P.; Rescigno, M.] Ist Nazl Fis Nucl, Sez Roma, I-00185 Rome, Italy.
   [Giagu, S.; Iori, M.] Univ Roma La Sapienza, I-00185 Rome, Italy.
   [Halkiadakis, E.; Hare, D.; Hidas, D.; Lath, A.; Somalwar, S.] Rutgers State Univ, Piscataway, NJ 08855 USA.
   [Asaadi, J.; Aurisano, A.; Elagin, A.; Eusebi, R.; Goldin, D.; Kamon, T.; Khotilovich, V.; Krutelyov, V.; Lee, E.; Lee, S. W.; McIntyre, P.; Safonov, A.; Toback, D.; Weinberger, M.] Texas A&M Univ, College Stn, TX 77843 USA.
   [Hara, K.; Kim, S. H.; Kurata, M.; Miyake, H.; Nagai, Y.; Sato, K.; Shimojima, M.; Sudo, Y.; Takemasa, K.; Takeuchi, Y.; Tomura, T.; Ukegawa, F.] Univ Tsukuba, Tsukuba, Ibaraki 305, Japan.
   [Hare, M.; Napier, A.; Pauletta, G.; Rolli, S.; Santi, L.; Sliwa, K.; Totaro, P.; Whitehouse, B.] Tufts Univ, Medford, MA 02155 USA.
   [Arisawa, T.; Ebina, K.; Kimura, N.; Kondo, K.; Naganoma, J.; Yorita, K.] Waseda Univ, Tokyo 169, Japan.
   [Harr, R. F.; Karchin, P. E.; Mattson, M. E.] Wayne State Univ, Detroit, MI 48201 USA.
   [Bellinger, J.; Carlsmith, D.; Chung, W. H.; Herndon, M.; Nett, J.; Pondrom, L.; Pursley, J.; Ramakrishnan, V.] Univ Wisconsin, Madison, WI 53706 USA.
   [Auerbach, B.; Almenar, C. Cuenca; Husemann, U.; Lockwitz, S.; Loginov, A.; Schmidt, M. P.; Stanitzki, M.] Yale Univ, New Haven, CT 06520 USA.
   [Cauz, D.; Pagliarone, C.; Pauletta, G.; Penzo, A.; Rossi, M.; Santi, L.; Totaro, P.; Zanetti, A.] Ist Nazl Fis Nucl Trieste Udine, I-34100 Trieste, Italy.
   Univ Trieste Udine, I-33100 Udine, Italy.
RP Aaltonen, T (reprint author), Univ Helsinki, Dept Phys, Div High Energy Phys, FIN-00014 Helsinki, Finland.
RI Piacentino, Giovanni/K-3269-2015; Martinez Ballarin,
   Roberto/K-9209-2015; Gorelov, Igor/J-9010-2015; Prokoshin,
   Fedor/E-2795-2012; Canelli, Florencia/O-9693-2016; Scodellaro,
   Luca/K-9091-2014; Grinstein, Sebastian/N-3988-2014; Paulini,
   Manfred/N-7794-2014; Russ, James/P-3092-2014; unalan,
   zeynep/C-6660-2015; Lazzizzera, Ignazio/E-9678-2015; vilar,
   rocio/P-8480-2014; Cabrera Urban, Susana/H-1376-2015; Garcia, Jose
   /H-6339-2015; Cavalli-Sforza, Matteo/H-7102-2015; ciocci, maria agnese
   /I-2153-2015; Chiarelli, Giorgio/E-8953-2012; Introzzi,
   Gianluca/K-2497-2015; Lysak, Roman/H-2995-2014; Moon,
   Chang-Seong/J-3619-2014; manca, giulia/I-9264-2012; Ruiz,
   Alberto/E-4473-2011; Ivanov, Andrew/A-7982-2013; lebert,
   thomas/H-4032-2011; Robson, Aidan/G-1087-2011; Amerio,
   Silvia/J-4605-2012; Zeng, Yu/C-1438-2013; De Cecco, Sandro/B-1016-2012;
   Annovi, Alberto/G-6028-2012; Punzi, Giovanni/J-4947-2012; Warburton,
   Andreas/N-8028-2013; Kim, Soo-Bong/B-7061-2014
OI Piacentino, Giovanni/0000-0001-9884-2924; Martinez Ballarin,
   Roberto/0000-0003-0588-6720; Gorelov, Igor/0000-0001-5570-0133;
   Prokoshin, Fedor/0000-0001-6389-5399; Canelli,
   Florencia/0000-0001-6361-2117; Scodellaro, Luca/0000-0002-4974-8330;
   Grinstein, Sebastian/0000-0002-6460-8694; Paulini,
   Manfred/0000-0002-6714-5787; Russ, James/0000-0001-9856-9155; unalan,
   zeynep/0000-0003-2570-7611; Lazzizzera, Ignazio/0000-0001-5092-7531;
   ciocci, maria agnese /0000-0003-0002-5462; Chiarelli,
   Giorgio/0000-0001-9851-4816; Introzzi, Gianluca/0000-0002-1314-2580;
   Moon, Chang-Seong/0000-0001-8229-7829; Ruiz,
   Alberto/0000-0002-3639-0368; Ivanov, Andrew/0000-0002-9270-5643; Annovi,
   Alberto/0000-0002-4649-4398; Punzi, Giovanni/0000-0002-8346-9052;
   Warburton, Andreas/0000-0002-2298-7315; 
FU U.S. Department of Energy; National Science Foundation; Italian Istituto
   Nazionale di Fisica Nucleare; Ministry of Education, Culture, Sports,
   Science and Technology of Japan; Natural Sciences and Engineering
   Research Council of Canada; National Science Council of the Republic of
   China; Swiss National Science Foundation; A.P. Sloan Foundation;
   Bundesministerium fur Bildung und Forschung, Germany; World Class
   University; National Research Foundation of Korea; Science and
   Technology Facilities Council; Royal Society, U.K.; Institut National de
   Physique Nucleaire et Physique des Particules/CNRS; Russian Foundation
   for Basic Research; Ministerio de Ciencia e Innovacion; Programa
   Consolider, Spain; Slovak RD Agency; Academy of Finland
FX We thank the Fermilab staff and the technical staffs of the
   participating institutions for their vital contributions. This work was
   supported by the U.S. Department of Energy and National Science
   Foundation; the Italian Istituto Nazionale di Fisica Nucleare; the
   Ministry of Education, Culture, Sports, Science and Technology of Japan;
   the Natural Sciences and Engineering Research Council of Canada; the
   National Science Council of the Republic of China; the Swiss National
   Science Foundation; the A.P. Sloan Foundation; the Bundesministerium fur
   Bildung und Forschung, Germany; the World Class University Program, the
   National Research Foundation of Korea; the Science and Technology
   Facilities Council and the Royal Society, U.K.; the Institut National de
   Physique Nucleaire et Physique des Particules/CNRS; the Russian
   Foundation for Basic Research; the Ministerio de Ciencia e Innovacion,
   and Programa Consolider-Ingenio 2010, Spain; the Slovak R&D Agency; and
   the Academy of Finland.
NR 30
TC 9
Z9 9
U1 2
U2 19
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 13
PY 2010
VL 105
IS 25
AR 251802
DI 10.1103/PhysRevLett.105.251802
PG 7
WC Physics, Multidisciplinary
SC Physics
GA 713PR
UT WOS:000286750400004
ER

PT J
AU Aaltonen, T
   Gonzalez, BA
   Amerio, S
   Amidei, D
   Anastassov, A
   Annovi, A
   Antos, J
   Apollinari, G
   Appel, JA
   Apresyan, A
   Arisawa, T
   Artikov, A
   Asaadi, J
   Ashmanskas, W
   Auerbach, B
   Aurisano, A
   Azfar, F
   Badgett, W
   Barbaro-Galtieri, A
   Barnes, VE
   Barnett, BA
   Barria, P
   Bartos, P
   Bauce, M
   Bauer, G
   Bedeschi, F
   Beecher, D
   Behari, S
   Bellettini, G
   Bellinger, J
   Benjamin, D
   Beretvas, A
   Bhatti, A
   Binkley, M
   Bisello, D
   Bizjak, I
   Bland, KR
   Blumenfeld, B
   Bocci, A
   Bodek, A
   Bortoletto, D
   Boudreau, J
   Boveia, A
   Brau, B
   Brigliadori, L
   Brisuda, A
   Bromberg, C
   Brucken, E
   Bucciantonio, M
   Budagov, J
   Budd, HS
   Budd, S
   Burkett, K
   Busetto, G
   Bussey, P
   Buzatu, A
   Calancha, C
   Camarda, S
   Campanelli, M
   Campbell, M
   Canelli, F
   Canepa, A
   Carls, B
   Carlsmith, D
   Carosi, R
   Carrillo, S
   Carron, S
   Casal, B
   Casarsa, M
   Castro, A
   Catastini, P
   Cauz, D
   Cavaliere, V
   Cavalli-Sforza, M
   Cerri, A
   Cerrito, L
   Chen, YC
   Chertok, M
   Chiarelli, G
   Chlachidze, G
   Chlebana, F
   Cho, K
   Chokheli, D
   Chou, JP
   Chung, WH
   Chung, YS
   Ciobanu, CI
   Ciocci, MA
   Clark, A
   Compostella, G
   Convery, ME
   Conway, J
   Corbo, M
   Cordelli, M
   Cox, CA
   Cox, DJ
   Crescioli, F
   Almenar, CC
   Cuevas, J
   Culbertson, R
   Dagenhart, D
   d'Ascenzo, N
   Datta, M
   de Barbaro, P
   De Cecco, S
   De Lorenzo, G
   Dell'Orso, M
   Deluca, C
   Demortier, L
   Deng, J
   Deninno, M
   Devoto, F
   d'Errico, M
   Di Canto, A
   Di Ruzza, B
   Dittmann, JR
   D'Onofrio, M
   Donati, S
   Dong, P
   Dorigo, T
   Ebina, K
   Elagin, A
   Eppig, A
   Erbacher, R
   Errede, D
   Errede, S
   Ershaidat, N
   Eusebi, R
   Fang, HC
   Farrington, S
   Feindt, M
   Fernandez, JP
   Ferrazza, C
   Field, R
   Flanagan, G
   Forrest, R
   Frank, MJ
   Franklin, M
   Freeman, JC
   Furic, I
   Gallinaro, M
   Galyardt, J
   Garcia, JE
   Garfinkel, AF
   Garosi, P
   Gerberich, H
   Gerchtein, E
   Giagu, S
   Giakoumopoulou, V
   Giannetti, P
   Gibson, K
   Ginsburg, CM
   Giokaris, N
   Giromini, P
   Giunta, M
   Giurgiu, G
   Glagolev, V
   Glenzinski, D
   Gold, M
   Goldin, D
   Goldschmidt, N
   Golossanov, A
   Gomez, G
   Gomez-Ceballos, G
   Goncharov, M
   Gonzalez, O
   Gorelov, I
   Goshaw, AT
   Goulianos, K
   Gresele, A
   Grinstein, S
   Grosso-Pilcher, C
   Group, RC
   da Costa, JG
   Gunay-Unalan, Z
   Haber, C
   Hahn, SR
   Halkiadakis, E
   Hamaguchi, A
   Han, JY
   Happacher, F
   Hara, K
   Hare, D
   Hare, M
   Harr, RF
   Hatakeyama, K
   Hays, C
   Heck, M
   Heinrich, J
   Herndon, M
   Hewamanage, S
   Hidas, D
   Hocker, A
   Hopkins, W
   Horn, D
   Hou, S
   Hughes, RE
   Hurwitz, M
   Husemann, U
   Hussain, N
   Hussein, M
   Huston, J
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   Ivanov, A
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   Jayatilaka, B
   Jeon, EJ
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   Kruse, M
   Krutelyov, V
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   Kurata, M
   Kwang, S
   Laasanen, AT
   Lami, S
   Lammel, S
   Lancaster, M
   Lander, RL
   Lannon, K
   Lath, A
   Latino, G
   Lazzizzera, I
   LeCompte, T
   Lee, E
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   Moon, CS
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   Nagai, Y
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   Okusawa, T
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   Palencia, E
   Papadimitriou, V
   Paramonov, AA
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   Paulini, M
   Paus, C
   Pellett, DE
   Penzo, A
   Phillips, TJ
   Piacentino, G
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AF Aaltonen, T.
   Alvarez Gonzalez, B.
   Amerio, S.
   Amidei, D.
   Anastassov, A.
   Annovi, A.
   Antos, J.
   Apollinari, G.
   Appel, J. A.
   Apresyan, A.
   Arisawa, T.
   Artikov, A.
   Asaadi, J.
   Ashmanskas, W.
   Auerbach, B.
   Aurisano, A.
   Azfar, F.
   Badgett, W.
   Barbaro-Galtieri, A.
   Barnes, V. E.
   Barnett, B. A.
   Barria, P.
   Bartos, P.
   Bauce, M.
   Bauer, G.
   Bedeschi, F.
   Beecher, D.
   Behari, S.
   Bellettini, G.
   Bellinger, J.
   Benjamin, D.
   Beretvas, A.
   Bhatti, A.
   Binkley, M.
   Bisello, D.
   Bizjak, I.
   Bland, K. R.
   Blumenfeld, B.
   Bocci, A.
   Bodek, A.
   Bortoletto, D.
   Boudreau, J.
   Boveia, A.
   Brau, B.
   Brigliadori, L.
   Brisuda, A.
   Bromberg, C.
   Brucken, E.
   Bucciantonio, M.
   Budagov, J.
   Budd, H. S.
   Budd, S.
   Burkett, K.
   Busetto, G.
   Bussey, P.
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   Calancha, C.
   Camarda, S.
   Campanelli, M.
   Campbell, M.
   Canelli, F.
   Canepa, A.
   Carls, B.
   Carlsmith, D.
   Carosi, R.
   Carrillo, S.
   Carron, S.
   Casal, B.
   Casarsa, M.
   Castro, A.
   Catastini, P.
   Cauz, D.
   Cavaliere, V.
   Cavalli-Sforza, M.
   Cerri, A.
   Cerrito, L.
   Chen, Y. C.
   Chertok, M.
   Chiarelli, G.
   Chlachidze, G.
   Chlebana, F.
   Cho, K.
   Chokheli, D.
   Chou, J. P.
   Chung, W. H.
   Chung, Y. S.
   Ciobanu, C. I.
   Ciocci, M. A.
   Clark, A.
   Compostella, G.
   Convery, M. E.
   Conway, J.
   Corbo, M.
   Cordelli, M.
   Cox, C. A.
   Cox, D. J.
   Crescioli, F.
   Almenar, C. Cuenca
   Cuevas, J.
   Culbertson, R.
   Dagenhart, D.
   d'Ascenzo, N.
   Datta, M.
   de Barbaro, P.
   De Cecco, S.
   De Lorenzo, G.
   Dell'Orso, M.
   Deluca, C.
   Demortier, L.
   Deng, J.
   Deninno, M.
   Devoto, F.
   d'Errico, M.
   Di Canto, A.
   Di Ruzza, B.
   Dittmann, J. R.
   D'Onofrio, M.
   Donati, S.
   Dong, P.
   Dorigo, T.
   Ebina, K.
   Elagin, A.
   Eppig, A.
   Erbacher, R.
   Errede, D.
   Errede, S.
   Ershaidat, N.
   Eusebi, R.
   Fang, H. C.
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CA CDF Collaboration
TI Top Quark Mass Measurement in the lepton plus jets Channel Using a
   Matrix Element Method and in situ Jet Energy Calibration
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID COLLIDER DETECTOR; QCD; COLLISIONS; FERMILAB
AB A precision measurement of the top quark mass m(t) is obtained using a sample of t (t) over bar events from p (p) over bar collisions at the Fermilab Tevatron with the CDF II detector. Selected events require an electron or muon, large missing transverse energy, and exactly four high-energy jets, at least one of which is tagged as coming from a b quark. A likelihood is calculated using a matrix element method with quasi-Monte Carlo integration taking into account finite detector resolution and jet mass effects. The event likelihood is a function of mt and a parameter Delta(JES) used to calibrate the jet energy scale in situ. Using a total of 1087 events in 5.6 fb(-1) of integrated luminosity, a value of m(t) 173.0 +/- 1.2 GeV/c(2) is measured.
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   [Apresyan, A.; Barnes, V. E.; Bortoletto, D.; Flanagan, G.; Garfinkel, A. F.; Jones, M.; Laasanen, A. T.; Liu, Q.; Margaroli, F.; Potamianos, K.; Ranjan, N.; Sedov, A.] Purdue Univ, W Lafayette, IN 47907 USA.
   [Bodek, A.; Budd, H. S.; Chung, Y. S.; de Barbaro, P.; Han, J. Y.; McFarland, K. S.; Sakumoto, W. K.] Univ Rochester, Rochester, NY 14627 USA.
   [Bhatti, A.; Demortier, L.; Gallinaro, M.; Goulianos, K.; Lungu, G.; Malik, S.; Mesropian, C.] Rockefeller Univ, New York, NY 10065 USA.
   [De Cecco, S.; Giagu, S.; Iori, M.; Mastrandrea, P.; Rescigno, M.] Ist Nazl Fis Nucl, Sez Roma 1, I-00185 Rome, Italy.
   [Giagu, S.; Iori, M.] Univ Roma La Sapienza, I-00185 Rome, Italy.
   [Halkiadakis, E.; Hare, D.; Hidas, D.; Lath, A.; Somalwar, S.] Rutgers State Univ, Piscataway, NJ 08855 USA.
   [Asaadi, J.; Aurisano, A.; Elagin, A.; Eusebi, R.; Goldin, D.; Kamon, T.; Khotilovich, V.; Krutelyov, V.; Lee, E.; Lee, S. W.; McIntyre, P.; Safonov, A.; Toback, D.; Weinberger, M.] Texas A&M Univ, College Stn, TX 77843 USA.
   [Volobouev, I.] Texas Tech Univ, Lubbock, TX 79609 USA.
   [Cauz, D.; Pagliarone, C.; Pauletta, G.; Penzo, A.; Rossi, M.; Santi, L.; Totaro, P.; Zanetti, A.] Ist Nazl Fis Nucl Trieste Udine, I-34100 Trieste, Italy.
   [Pauletta, G.; Santi, L.; Totaro, P.] Univ Trieste Udine, I-33100 Udine, Italy.
   [Hara, K.; Kurata, M.; Miyake, H.; Nagai, Y.; Sato, K.; Shimojima, M.; Sudo, Y.; Takemasa, K.; Takeuchi, Y.; Tomura, T.; Ukegawa, F.] Univ Tsukuba, Tsukuba, Ibaraki 305, Japan.
   [Hare, M.; Napier, A.; Rolli, S.; Sliwa, K.; Whitehouse, B.] Tufts Univ, Medford, MA 02155 USA.
   [Group, R. C.; Neu, C.; Oksuzian, I.] Univ Virginia, Charlottesville, VA 22906 USA.
   [Arisawa, T.; Ebina, K.; Kimura, N.; Kondo, K.; Naganoma, J.; Yorita, K.] Waseda Univ, Tokyo 169, Japan.
   [Harr, R. F.; Karchin, P. E.; Mattson, M. E.] Wayne State Univ, Detroit, MI 48201 USA.
   [Bellinger, J.; Carlsmith, D.; Chung, W. H.; Herndon, M.; Nett, J.; Pondrom, L.; Pursley, J.; Ramakrishnan, V.] Univ Wisconsin, Madison, WI 53706 USA.
   [Auerbach, B.; Almenar, C. Cuenca; Husemann, U.; Lockwitz, S.; Loginov, A.; Schmidt, M. P.; Stanitzki, M.] Yale Univ, New Haven, CT 06520 USA.
RP Aaltonen, T (reprint author), Univ Helsinki, Dept Phys, Div High Energy Phys, FIN-00014 Helsinki, Finland.
RI Martinez Ballarin, Roberto/K-9209-2015; Gorelov, Igor/J-9010-2015;
   Prokoshin, Fedor/E-2795-2012; Canelli, Florencia/O-9693-2016;
   Scodellaro, Luca/K-9091-2014; Grinstein, Sebastian/N-3988-2014; Paulini,
   Manfred/N-7794-2014; Russ, James/P-3092-2014; unalan,
   zeynep/C-6660-2015; Lazzizzera, Ignazio/E-9678-2015; vilar,
   rocio/P-8480-2014; Garcia, Jose /H-6339-2015; Cavalli-Sforza,
   Matteo/H-7102-2015; ciocci, maria agnese /I-2153-2015; Chiarelli,
   Giorgio/E-8953-2012; Introzzi, Gianluca/K-2497-2015; Piacentino,
   Giovanni/K-3269-2015; Lysak, Roman/H-2995-2014; Ruiz,
   Alberto/E-4473-2011; Moon, Chang-Seong/J-3619-2014; Robson,
   Aidan/G-1087-2011; De Cecco, Sandro/B-1016-2012; manca,
   giulia/I-9264-2012; Amerio, Silvia/J-4605-2012; Punzi,
   Giovanni/J-4947-2012; Zeng, Yu/C-1438-2013; Annovi, Alberto/G-6028-2012;
   Ivanov, Andrew/A-7982-2013; Warburton, Andreas/N-8028-2013; Kim,
   Soo-Bong/B-7061-2014; 
OI Martinez Ballarin, Roberto/0000-0003-0588-6720; Gorelov,
   Igor/0000-0001-5570-0133; Prokoshin, Fedor/0000-0001-6389-5399; Canelli,
   Florencia/0000-0001-6361-2117; Gallinaro, Michele/0000-0003-1261-2277;
   Scodellaro, Luca/0000-0002-4974-8330; Grinstein,
   Sebastian/0000-0002-6460-8694; Paulini, Manfred/0000-0002-6714-5787;
   Russ, James/0000-0001-9856-9155; unalan, zeynep/0000-0003-2570-7611;
   Lazzizzera, Ignazio/0000-0001-5092-7531; ciocci, maria agnese
   /0000-0003-0002-5462; Chiarelli, Giorgio/0000-0001-9851-4816; Introzzi,
   Gianluca/0000-0002-1314-2580; Piacentino, Giovanni/0000-0001-9884-2924;
   Ruiz, Alberto/0000-0002-3639-0368; Moon,
   Chang-Seong/0000-0001-8229-7829; Punzi, Giovanni/0000-0002-8346-9052;
   Annovi, Alberto/0000-0002-4649-4398; Ivanov, Andrew/0000-0002-9270-5643;
   Warburton, Andreas/0000-0002-2298-7315; Turini,
   Nicola/0000-0002-9395-5230; Brucken, Jens Erik/0000-0001-6066-8756
FU U.S. Department of Energy; National Science Foundation; Italian Istituto
   Nazionale di Fisica Nucleare; Ministry of Education, Culture, Sports,
   Science and Technology of Japan; Natural Sciences and Engineering
   Research Council of Canada; National Science Council of the Republic of
   China; Swiss National Science Foundation; A.P. Sloan Foundation;
   Bundesministerium fur Bildung und Forschung, Germany; World Class
   University; National Research Foundation of Korea; Science and
   Technology Facilities Council; Royal Society, United Kingdom; Institut
   National de Physique Nucleaire et Physique des Particules/CNRS; Russian
   Foundation for Basic Research; Ministerio de Ciencia e Innovacion, and
   Programa Consolider, Spain; Slovak RD Agency; Academy of Finland
FX We thank the Fermilab staff and the technical staffs of the
   participating institutions for their vital contributions. This work was
   supported by the U.S. Department of Energy and the National Science
   Foundation; the Italian Istituto Nazionale di Fisica Nucleare; the
   Ministry of Education, Culture, Sports, Science and Technology of Japan;
   the Natural Sciences and Engineering Research Council of Canada; the
   National Science Council of the Republic of China; the Swiss National
   Science Foundation; the A.P. Sloan Foundation; the Bundesministerium fur
   Bildung und Forschung, Germany; the World Class University Program, the
   National Research Foundation of Korea; the Science and Technology
   Facilities Council and the Royal Society, United Kingdom; the Institut
   National de Physique Nucleaire et Physique des Particules/CNRS; the
   Russian Foundation for Basic Research; the Ministerio de Ciencia e
   Innovacion, and Programa Consolider- Ingenio 2010, Spain; the Slovak R&D
   Agency; and the Academy of Finland.
NR 22
TC 28
Z9 28
U1 2
U2 20
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 13
PY 2010
VL 105
IS 25
AR 252001
DI 10.1103/PhysRevLett.105.252001
PG 7
WC Physics, Multidisciplinary
SC Physics
GA 713PR
UT WOS:000286750400005
ER

PT J
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CA ALICE Collaboration
TI Charged-Particle Multiplicity Density at Midrapidity in Central Pb-Pb
   Collisions at root s(NN)=2.76 TeV
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID PLUS AU COLLISIONS; AA COLLISIONS; PSEUDORAPIDITY DISTRIBUTIONS; PP
   INTERACTIONS; ENERGIES; LHC; PA
AB The first measurement of the charged-particle multiplicity density at midrapidity in Pb-Pb collisions at a center-of-mass energy per nucleon pair root s(NN) = 2.76 TeV is presented. For an event sample corresponding to the most central 5% of the hadronic cross section, the pseudorapidity density of primary charged particles at midrapidity is 1584 +/- 4(stat) +/- 76(syst), which corresponds to 8.3 +/- 0.4(syst) per participating nucleon pair. This represents an increase of about a factor 1.9 relative to pp collisions at similar collision energies, and about a factor 2.2 to central Au-Au collisions at root s(NN) = 0.2 TeV. This measurement provides the first experimental constraint for models of nucleus-nucleus collisions at LHC energies.
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   [Bellwied, R.; Borissov, A.; Cormier, T. M.; Dobrin, A.; Don, C. Kottachchi Kankanamge; Loggins, V. R.; Milosevic, J.; Mlynarz, J.; Pavlinov, A.; Piyarathna, D. B.; Prasad, S. K.; Pruneau, C. A.; Timmins, A. R.; Voloshin, S.] Wayne State Univ, Detroit, MI USA.
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   [Bhasin, A.; Gupta, A.; Gupta, R.; Mangotra, L.; Potukuchi, B.; Sambyal, S.; Sharma, S.; Singh, R.] Univ Jammu, Dept Phys, Jammu 180004, India.
   [Bianchi, N.; Casanova Diaz, A.; Balbastre, G. Conesa; Cunqueiro, L.; Moregula, A. De Azevedo; Di Nezza, P.; Fantoni, A.; Gianotti, P.; Hasch, D.; Muccifora, V.; Reolon, A. R.; Ronchetti, F.] Ist Nazl Fis Nucl, Lab Nazl Frascati, I-00044 Frascati, Italy.
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   [Blanco, F.; Madagodahettige-Don, D. M.; Jayarathna, S. P.; Pinsky, L.; Piyarathna, D. B.] Univ Houston, Houston, TX USA.
   [Bogdanov, A.; Grigoriev, V.; Kaplin, V.; Kondratyeva, N.; Loginov, V.] Moscow Engn Phys Inst, Moscow 115409, Russia.
   [Bombara, M.; Putis, M.; Urban, J.; Vrlakova, J.] Safarik Univ, Fac Sci, Kosice, Slovakia.
   [Bose, S.; Chattopadhyay, S.; Das, D.; Das, I.; Das, K.; Majumdar, A. K. Dutta; Roy, P.; Sinha, T.] Saha Inst Nucl Phys, Kolkata, India.
   [Boyer, B.; Espagnon, B.; Hadjidakis, C.; Hrivnacova, I.; Lafage, V.; Le Bornec, Y.; Noriega, M. Lopez; Rousseau, S.; Suire, C.; Takaki, J. D. Tapia; Palomo, L. Valencia] Univ Paris 11, CNRS, IN2P3, IPNO, F-91405 Orsay, France.
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   [Cicalo, C.; Masoni, A.] Sezione Ist Nazl Fis Nucl, Cagliari, Italy.
   [Contreras, J. G.; Crescio, E.; Corral, G. Herrera; Montano Zetina, L.; Ramirez Reyes, A.] CINVESTAV, Ctr Invest & Estudios Avanzados, Mexico City 14000, DF, Mexico.
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   [Cortese, P.; Dellacasa, G.; Ferretti, R.; Gemme, R.; Ramello, L.; Senyukov, S.; Sitta, M.] Grp Collegato INFN, Alessandria, Italy.
   [Cuautle, E.; Dominguez, I.; Maldonado Cervantes, I.; Mayani, D.; Ortiz Velasquez, A.; Paic, G.; Sanchez Castro, X.] Univ Nacl Autonoma Mexico, Inst Ciencias Nucl, Mexico City 04510, DF, Mexico.
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   [Dash, A.; Mahapatra, D. P.; Sahu, P. K.] Inst Phys, Bhubaneswar 751007, Orissa, India.
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   [De Caro, A.; De Gruttola, D.; De Pasquale, S.; Girard, M. Fusco; Pagano, P.; Virgili, T.] Univ Salerno, Dipartimento Fis ER Caianiello, I-84100 Salerno, Italy.
   [De Caro, A.; De Gruttola, D.; De Pasquale, S.; Girard, M. Fusco; Pagano, P.; Virgili, T.] Grp Collegato INFN, Salerno, Italy.
   [de Cataldo, G.; Elia, D.; Fini, R.; Lenti, V.; Manzari, V.; Mastromarco, M.; Nappi, E.; Paticchio, V.; Santoro, R.; Sgura, I.] Sezione Ist Nazl Fis Nucl, Bari, Italy.
   [De Falco, A.; Incani, E.; Puddu, G.; Serci, S.; Uras, A.; Usai, G. L.] Univ Cagliari, Dipartimento Fis, Cagliari, Italy.
   [De Falco, A.; Incani, E.; Puddu, G.; Serci, S.; Uras, A.; Usai, G. L.] Sezione Ist Nazl Fis Nucl, Cagliari, Italy.
   [Debski, P. R.; Deloff, A.; Dobrowolski, T.; Ilkiv, I.; Kurashvili, P.; Redlich, K.; Siemiarczuk, T.; Stefanek, G.; Wilk, G.] Soltan Inst Nucl Studies, PL-00681 Warsaw, Poland.
   [Di Liberto, S.; Mazzoni, M. A.; Meddi, F.; Urciuoli, G. M.] Sezione Ist Nazl Fis Nucl, Rome, Italy.
   [Erdal, H. A.; Helstrup, H.; Hetland, K. F.; Kileng, B.] Bergen Univ Coll, Fac Engn, Bergen, Norway.
   [Finogeev, D.; Guber, F.; Karavichev, O.; Karavicheva, T.; Karpechev, E.; Konevskih, A.; Kurepin, A.; Kurepin, A. B.; Maevskaya, A.; Pshenichnov, I.; Reshetin, A.] Russian Acad Sci, Inst Nucl Res, Moscow, Russia.
   [Fragkiadakis, M.; Ganoti, P.; Menis, I.; Roukoutakis, F.; Spyropoulou-Stassinaki, M.; Tagridis, C.; Vasileiou, M.] Univ Athens, Dept Phys, Athens, Greece.
   [Garcia-Solis, E.] Chicago State Univ, Chicago, IL USA.
   [Girard, M. R.; Oleniacz, J.; Ostrowski, P.; Pawlak, T.; Peryt, W.; Pluta, J.; Traczyk, T.; Zbroszczyk, H.] Warsaw Univ Technol, Warsaw, Poland.
   [Gomez, R.; Leon Monzon, I.; Podesta-Lerma, P. L. M.] Univ Autonoma Sinaloa, Culiacan, Mexico.
   [Gotovac, S.; Mudnic, E.; Vickovic, L.] Tech Univ Split FESB, Split, Croatia.
   [Grigoryan, A.; Hayrapetyan, A.] Yerevan Phys Inst, Yerevan 375036, Armenia.
   [Gunji, T.; Hamagaki, H.; Hori, Y.; Ozawa, K.; Sano, S.; Tsuji, T.] Univ Tokyo, Tokyo, Japan.
   [Hwang, D. S.; Kim, J. H.; Kim, S.; Son, H.] Sejong Univ, Dept Phys, Seoul, South Korea.
   [Jacobs, P. M.; Loizides, C.; Ploskon, M.; Sakai, S.; Symons, T. J. M.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Jena, S.; Meethaleveedu, G. Koyithatta; Nandi, B. K.; Nyatha, A.; Varma, R.] Indian Inst Technol, Mumbai 400076, Maharashtra, India.
   [Kalweit, A.; Kraus, I.; Oeschler, H.; Ricaud, H.] Tech Univ Darmstadt, Inst Kernphys, Darmstadt, Germany.
   [Kang, J. H.; Kim, M.; Kwon, Y.; Song, M.] Yonsei Univ, Seoul 120749, South Korea.
   [Keidel, R.] Fachhsch Woms, ZTT, Worms, Germany.
   [Klay, J. L.] Calif Polytech State Univ San Luis Obispo, San Luis Obispo, CA 93407 USA.
   [Li, X.] China Inst Atom Energy, Beijing, Peoples R China.
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   [Markert, C.; Karampatsos, L. Xaplanteris] Univ Texas Austin, Dept Phys, Austin, TX 78712 USA.
   [Martashvili, I.; Nattrass, C.; Read, K. F.; Scott, R.] Univ Tennessee, Knoxville, TN USA.
   [Meddi, F.] Univ Roma La Sapienza, Dipartimento Fis, I-00185 Rome, Italy.
   [Midori, J.; Obayashi, H.; Shigaki, K.; Sugitate, T.; Torii, H.] Hiroshima Univ, Hiroshima, Japan.
   [Pestov, Y.] Budker Inst Nucl Phys, Novosibirsk 630090, Russia.
   [Raniwala, R.; Raniwala, S.] Univ Rajasthan, Dept Phys, Jaipur 302004, Rajasthan, India.
   [Scharenberg, R. P.; Srivastava, B. K.] Purdue Univ, W Lafayette, IN 47907 USA.
   [Song, J.; Yi, J.; Yoo, I. -K.] Pusan Natl Univ, Pusan 609735, South Korea.
   [Vernet, R.] Ctr Calcul IN2P3, Villeurbanne, France.
   [Bortolin, C.] Univ Udine, Dipartimento Fis, I-33100 Udine, Italy.
   [Fabjan, C. W.] Austrian Acad Sci, A-1010 Vienna, Austria.
   [Fabjan, C. W.] Univ Technol Vienna, Vienna, Austria.
   [Krawutschke, T.] Univ Cologne, Cologne, Germany.
   [Malinina, L.] Moscow MV Lomonosov State Univ, Moscow, Russia.
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RP Aamodt, K (reprint author), Univ Bergen, Dept Phys & Technol, Bergen, Norway.
RI Deppman, Airton/J-5787-2014; Inst. of Physics, Gleb
   Wataghin/A-9780-2017; Ferreiro, Elena/C-3797-2017; Armesto,
   Nestor/C-4341-2017; Martinez Hernandez, Mario Ivan/F-4083-2010;
   Ferretti, Alessandro/F-4856-2013; Vickovic, Linda/F-3517-2017; Fernandez
   Tellez, Arturo/E-9700-2017; Vinogradov, Leonid/K-3047-2013; Pshenichnov,
   Igor/A-4063-2008; Altsybeev, Igor/K-6687-2013; Vechernin,
   Vladimir/J-5832-2013; Adamova, Dagmar/G-9789-2014; De Pasquale,
   Salvatore/B-9165-2008; de Cuveland, Jan/H-6454-2016; Kurepin,
   Alexey/H-4852-2013; Akindinov, Alexander/J-2674-2016; Nattrass,
   Christine/J-6752-2016; Suaide, Alexandre/L-6239-2016; van der Kolk,
   Naomi/M-9423-2016; Krizek, Filip/G-8967-2014; Bielcikova,
   Jana/G-9342-2014; Blau, Dmitry/H-4523-2012; Yang, Hongyan/J-9826-2014;
   Cosentino, Mauro/L-2418-2014; Vacchi, Andrea/C-1291-2010; Bearden,
   Ian/M-4504-2014; Sumbera, Michal/O-7497-2014; Kharlov, Yuri/D-2700-2015;
   Usai, Gianluca/E-9604-2015; Salgado, Carlos A./G-2168-2015; HAMAGAKI,
   HIDEKI/G-4899-2014; Chinellato, David/D-3092-2012; Barbera,
   Roberto/G-5805-2012; Cortese, Pietro/G-6754-2012; Haiduc, Maria
   /C-5003-2011; Oh, Sun Kun/D-6993-2011; Gaardhoje,
   Jens-Jorgen/F-9008-2011; Mitu, Ciprian/E-6733-2011; Barnby,
   Lee/G-2135-2010; Coccetti, Fabrizio/H-4004-2011; Mischke,
   Andre/D-3614-2011; Petta, Catia/A-7023-2012; Takahashi, Jun/B-2946-2012;
   Felea, Daniel/C-1885-2012; Sevcenco, Adrian/C-1832-2012; SCAPPARONE,
   EUGENIO/H-1805-2012; Bagnasco, Stefano/J-4324-2012; Masera,
   Massimo/J-4313-2012; Gagliardi, Martino/J-4787-2012; Aglieri Rinella,
   Gianluca/I-8010-2012; beole', stefania/G-9353-2012; Turrisi,
   Rosario/H-4933-2012; Bregant, Marco/I-7663-2012; Christensen,
   Christian/D-6461-2012; Peitzmann, Thomas/K-2206-2012; feofilov,
   grigory/A-2549-2013; Traczyk, Tomasz/C-1310-2013; Ramello,
   Luciano/F-9357-2013; Castillo Castellanos, Javier/G-8915-2013; Voloshin,
   Sergei/I-4122-2013; Zarochentsev, Andrey/J-6253-2013; Kondratiev,
   Valery/J-8574-2013; Barnafoldi, Gergely Gabor/L-3486-2013; Christensen,
   Christian Holm/A-4901-2010; Levai, Peter/A-1544-2014; Guber,
   Fedor/I-4271-2013; Martinez Davalos, Arnulfo/F-3498-2013; Wagner,
   Vladimir/G-5650-2014; Vajzer, Michal/G-8469-2014
OI Gago Medina, Alberto Martin/0000-0002-0019-9692; Dainese,
   Andrea/0000-0002-2166-1874; Paticchio, Vincenzo/0000-0002-2916-1671;
   Monteno, Marco/0000-0002-3521-6333; Bhasin, Anju/0000-0002-3687-8179;
   SANTORO, ROMUALDO/0000-0002-4360-4600; Scarlassara,
   Fernando/0000-0002-4663-8216; Turrisi, Rosario/0000-0002-5272-337X;
   Tosello, Flavio/0000-0003-4602-1985; Beole',
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   Ferreiro, Elena/0000-0002-4449-2356; Armesto,
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   Carlos A./0000-0003-4586-2758; Chinellato, David/0000-0002-9982-9577;
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   Christian/0000-0002-1850-0121; Peitzmann, Thomas/0000-0002-7116-899X;
   feofilov, grigory/0000-0003-3700-8623; Traczyk,
   Tomasz/0000-0002-6602-4094; Castillo Castellanos,
   Javier/0000-0002-5187-2779; Zarochentsev, Andrey/0000-0002-3502-8084;
   Kondratiev, Valery/0000-0002-0031-0741; Christensen, Christian
   Holm/0000-0002-1850-0121; Guber, Fedor/0000-0001-8790-3218; Martinez
   Davalos, Arnulfo/0000-0002-9481-9548; 
FU Calouste Gulbenkian Foundation from Lisbon; Swiss Fonds Kidagan,
   Armenia; Conselho Nacional de Desenvolvimento Cientifico e Tecnologico
   (CNPq); Financiadora de Estudos e Projetos (FINEP); Fundacao de Amparo a
   Pesquisa do Estado de Sao Paulo (FAPESP); National Natural Science
   Foundation of China (NSFC); Chinese Ministry of Education (CMOE);
   Ministry of Science and Technology of China (MSTC); Ministry of
   Education and Youth of the Czech Republic; Danish Natural Science
   Research Council; Carlsberg Foundation; Danish National Research
   Foundation; The European Research Council under the European Community;
   Helsinki Institute of Physics; Academy of Finland; French CNRS; Region
   Pays de Loire; Region Alsace; Region Auvergne; CEA, France; German BMBF;
   Helmholtz Association; Hungarian OTKA; National Office for Research and
   Technology (NKTH); Department of Atomic Energy; Department of Science
   and Technology of the Government of India; Istituto Nazionale di Fisica
   Nucleare (INFN) of Italy; MEXT, Japan; Joint Institute for Nuclear
   Research, Dubna; National Research Foundation of Korea (NRF); CONACYT;
   DGAPA, Mexico; ALFA-EC; HELEN Program (High-Energy physics
   Latin-American-European Network); Stichting voor Fundamenteel Onderzoek
   der Materie (FOM); Nederlandse Organisatie voor Wetenschappelijk
   Onderzoek (NWO), Netherlands; Research Council of Norway (NFR); Polish
   Ministry of Science and Higher Education; National Authority for
   Scientific Research-NASR (Autoritatea Nationala pentru Cercetare
   Stiintifica-ANCS); Federal Agency of Science of the Ministry of
   Education and Science of Russian Federation; International Science and
   Technology Center; Russian Academy of Sciences; Russian Federal Agency
   of Atomic Energy; Russian Federal Agency for Science and Innovations;
   CERN-INTAS; Ministry of Education of Slovakia; CIEMAT; EELA; Ministerio
   de Educacion y Ciencia of Spain; Xunta de Galicia (Conselleria de
   Educacion); CEADEN; Cubaenergia; Cuba; IAEA (International Atomic Energy
   Agency); The Ministry of Science and Technology; National Research
   Foundation (NRF), South Africa; Swedish Reseach Council (VR); Knut &
   Alice Wallenberg Foundation (KAW); Ukraine Ministry of Education and
   Science; United Kingdom Science and Technology Facilities Council
   (STFC); The U. S. Department of Energy; U. S. National Science
   Foundation; State of Texas; State of Ohio
FX The ALICE Collaboration would like to thank all its engineers and
   technicians for their invaluable contributions to the construction of
   the experiment and the CERN accelerator teams for the outstanding
   performance of the LHC complex. The ALICE Collaboration acknowledges the
   following funding agencies for their support in building and running the
   ALICE detector: Calouste Gulbenkian Foundation from Lisbon and Swiss
   Fonds Kidagan, Armenia; Conselho Nacional de Desenvolvimento Cientifico
   e Tecnologico (CNPq), Financiadora de Estudos e Projetos (FINEP),
   Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP); National
   Natural Science Foundation of China (NSFC), the Chinese Ministry of
   Education (CMOE), and the Ministry of Science and Technology of China
   (MSTC); Ministry of Education and Youth of the Czech Republic; Danish
   Natural Science Research Council, the Carlsberg Foundation and the
   Danish National Research Foundation; The European Research Council under
   the European Community's Seventh Framework Programme; Helsinki Institute
   of Physics and the Academy of Finland; French CNRS-IN2P3, the "Region
   Pays de Loire,'' "Region Alsace,'' "Region Auvergne,'' and CEA, France;
   German BMBF and the Helmholtz Association; Hungarian OTKA and National
   Office for Research and Technology (NKTH); Department of Atomic Energy
   and Department of Science and Technology of the Government of India;
   Istituto Nazionale di Fisica Nucleare (INFN) of Italy; MEXT Grant-in-Aid
   for Specially Promoted Research, Japan; Joint Institute for Nuclear
   Research, Dubna; National Research Foundation of Korea (NRF); CONACYT,
   DGAPA, Mexico, ALFA-EC, and the HELEN Program (High-Energy physics
   Latin-American-European Network); Stichting voor Fundamenteel Onderzoek
   der Materie (FOM) and the Nederlandse Organisatie voor Wetenschappelijk
   Onderzoek (NWO), Netherlands; Research Council of Norway (NFR); Polish
   Ministry of Science and Higher Education; National Authority for
   Scientific Research-NASR (Autoritatea Nationala pentru Cercetare
   Stiintifica-ANCS); Federal Agency of Science of the Ministry of
   Education and Science of Russian Federation, International Science and
   Technology Center, Russian Academy of Sciences, Russian Federal Agency
   of Atomic Energy, Russian Federal Agency for Science and Innovations,
   and CERN-INTAS; Ministry of Education of Slovakia; CIEMAT, EELA,
   Ministerio de Educacion y Ciencia of Spain, Xunta de Galicia
   (Conselleria de Educacion), CEADEN, Cubaenergia, Cuba, and IAEA
   (International Atomic Energy Agency); The Ministry of Science and
   Technology and the National Research Foundation (NRF), South Africa;
   Swedish Reseach Council (VR) and Knut & Alice Wallenberg Foundation
   (KAW); Ukraine Ministry of Education and Science; United Kingdom Science
   and Technology Facilities Council (STFC); The U. S. Department of
   Energy, the U. S. National Science Foundation, the State of Texas, and
   the State of Ohio.
NR 38
TC 190
Z9 194
U1 5
U2 96
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 13
PY 2010
VL 105
IS 25
AR 252301
DI 10.1103/PhysRevLett.105.252301
PG 11
WC Physics, Multidisciplinary
SC Physics
GA 713PR
UT WOS:000286750400007
PM 21231579
ER

PT J
AU Aamodt, K
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   Quintana, AA
   Adamova, D
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   Aggarwal, MM
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CA ALICE Collaboration
TI Elliptic Flow of Charged Particles in Pb-Pb Collisions at root
   s(NN)=2.76 TeV
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID RELATIVISTIC NUCLEAR COLLISIONS; HEAVY-ION COLLISIONS; QUARK-GLUON
   PLASMA; PLUS AU COLLISIONS; ANISOTROPIC FLOW; COLLABORATION;
   PERSPECTIVE; MATTER; LIMIT
AB We report the first measurement of charged particle elliptic flow in Pb-Pb collisions at root s(NN) p = 2.76 TeV with the ALICE detector at the CERN Large Hadron Collider. The measurement is performed in the central pseudorapidity region (vertical bar eta vertical bar < 0.8) and transverse momentum range 0.2 < p(t) < 5.0 GeV/c. The elliptic flow signal v(2), measured using the 4-particle correlation method, averaged over transverse momentum and pseudorapidity is 0.087 +/- 0.002(stat) +/- 0.003(syst) in the 40%-50% centrality class. The differential elliptic flow v(2)(p(t)) reaches a maximum of 0.2 near p(t) = 3 GeV/c. Compared to RHIC Au-Au collisions at root s(NN) = 200 GeV, the elliptic flow increases by about 30%. Some hydrodynamic model predictions which include viscous corrections are in agreement with the observed increase.
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RP Aamodt, K (reprint author), Univ Bergen, Dept Phys & Technol, Bergen, Norway.
RI Vajzer, Michal/G-8469-2014; Krizek, Filip/G-8967-2014; Bielcikova,
   Jana/G-9342-2014; Adamova, Dagmar/G-9789-2014; Blau, Dmitry/H-4523-2012;
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   Christian/D-6461-2012; Peitzmann, Thomas/K-2206-2012; feofilov,
   grigory/A-2549-2013; Traczyk, Tomasz/C-1310-2013; Haiduc, Maria
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   Igor/K-6687-2013; Vechernin, Vladimir/J-5832-2013; De Pasquale,
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OI Cosentino, Mauro/0000-0002-7880-8611; Vacchi,
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   Michal/0000-0002-0639-7323; Usai, Gianluca/0000-0002-8659-8378; Aglieri
   Rinella, Gianluca/0000-0002-9611-3696; Christensen,
   Christian/0000-0002-1850-0121; Peitzmann, Thomas/0000-0002-7116-899X;
   feofilov, grigory/0000-0003-3700-8623; Traczyk,
   Tomasz/0000-0002-6602-4094; Gaardhoje, Jens-Jorgen/0000-0001-6122-4698;
   Barnby, Lee/0000-0001-7357-9904; Takahashi, Jun/0000-0002-4091-1779;
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   Tosello, Flavio/0000-0003-4602-1985; Beole',
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FU Calouste Gulbenkian Foundation from Lisbon; Swiss Fonds Kidagan,
   Armenia; Conselho Nacional de Desenvolvimento Cientifico e Tecnologico
   (CNPq); Financiadora de Estudos e Projetos (FINEP); Fundacao de Amparo a
   Pesquisa do Estado de Sao Paulo (FAPESP); National Natural Science
   Foundation of China (NSFC); Chinese Ministry of Education (CMOE);
   Ministry of Science and Technology of China (MSTC); Ministry of
   Education and Youth of the Czech Republic; Danish Natural Science
   Research Council; Carlsberg Foundation; Danish National Research
   Foundation; The European Research Council under the European Community;
   Helsinki Institute of Physics; Academy of Finland; French CNRS; Region
   Pays de Loire; Region Alsace; Region Auvergne; CEA, France; German BMBF;
   Helmholtz Association; Hungarian OTKA; National Office for Research and
   Technology (NKTH); Department of Atomic Energy and Department of Science
   and Technology of the Government of India; Istituto Nazionale di Fisica
   Nucleare (INFN) of Italy; MEXT, Japan; Joint Institute for Nuclear
   Research, Dubna; National Research Foundation of Korea (NRF); CONACYT;
   DGAPA, Mexico; ALFA-EC; HELEN (High-Energy physics
   Latin-American-European Network); Stichting voor Fundamenteel Onderzoek
   der Materie (FOM); Nederlandse Organisatie voor Wetenschappelijk
   Onderzoek (NWO), Netherlands; Research Council of Norway (NFR); Polish
   Ministry of Science and Higher Education; National Authority for
   Scientific Research-NASR (Autoritatea Nationala pentru Cercetare
   Stiintifica-ANCS); Federal Agency of Science of the Ministry of
   Education and Science of Russian Federation; International Science and
   Technology Center, Russian Academy of Sciences; Russian Federal Agency
   of Atomic Energy; Russian Federal Agency for Science and Innovations;
   CERN-INTAS; Ministry of Education of Slovakia; CIEMAT; EELA; Ministerio
   de Educacion y Ciencia of Spain; Xunta de Galicia (Conselleria de
   Educacion); CEADEN; Cubaenergia; Cuba; IAEA (International Atomic Energy
   Agency); The Ministry of Science and Technology; National Research
   Foundation (NRF), South Africa; Swedish Research Council (VR); Knut &
   Alice Wallenberg Foundation (KAW); Ukraine Ministry of Education and
   Science; United Kingdom Science and Technology Facilities Council
   (STFC); The U.S. Department of Energy; U.S. National Science Foundation;
   State of Texas; State of Ohio
FX The ALICE Collaboration would like to thank all its engineers and
   technicians for their invaluable contributions to the construction of
   the experiment and the CERN accelerator teams for the outstanding
   performance of the LHC complex. The ALICE Collaboration acknowledges the
   following funding agencies for their support in building and running the
   ALICE detector: Calouste Gulbenkian Foundation from Lisbon and Swiss
   Fonds Kidagan, Armenia; Conselho Nacional de Desenvolvimento Cientifico
   e Tecnologico (CNPq), Financiadora de Estudos e Projetos (FINEP),
   Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP); National
   Natural Science Foundation of China (NSFC), the Chinese Ministry of
   Education (CMOE), and the Ministry of Science and Technology of China
   (MSTC); Ministry of Education and Youth of the Czech Republic; Danish
   Natural Science Research Council, the Carlsberg Foundation, and the
   Danish National Research Foundation; The European Research Council under
   the European Community's Seventh Framework Programme; Helsinki Institute
   of Physics and the Academy of Finland; French CNRS-IN2P3, the "Region
   Pays de Loire,'' "Region Alsace,'' "Region Auvergne,'' and CEA, France;
   German BMBF and the Helmholtz Association; Hungarian OTKA and National
   Office for Research and Technology (NKTH); Department of Atomic Energy
   and Department of Science and Technology of the Government of India;
   Istituto Nazionale di Fisica Nucleare (INFN) of Italy; MEXT Grant-in-Aid
   for Specially Promoted Research, Japan; Joint Institute for Nuclear
   Research, Dubna; National Research Foundation of Korea (NRF); CONACYT,
   DGAPA, Mexico, ALFA-EC, and the HELEN Program (High-Energy physics
   Latin-American-European Network); Stichting voor Fundamenteel Onderzoek
   der Materie (FOM) and the Nederlandse Organisatie voor Wetenschappelijk
   Onderzoek (NWO), Netherlands; Research Council of Norway (NFR); Polish
   Ministry of Science and Higher Education; National Authority for
   Scientific Research-NASR (Autoritatea Nationala pentru Cercetare
   Stiintifica-ANCS); Federal Agency of Science of the Ministry of
   Education and Science of Russian Federation, International Science and
   Technology Center, Russian Academy of Sciences, Russian Federal Agency
   of Atomic Energy, Russian Federal Agency for Science and Innovations,
   and CERN-INTAS; Ministry of Education of Slovakia; CIEMAT, EELA,
   Ministerio de Educacion y Ciencia of Spain, Xunta de Galicia
   (Conselleria de Educacion), CEADEN, Cubaenergia, Cuba, and IAEA
   (International Atomic Energy Agency); The Ministry of Science and
   Technology and the National Research Foundation (NRF), South Africa;
   Swedish Research Council (VR) and Knut & Alice Wallenberg Foundation
   (KAW); Ukraine Ministry of Education and Science; United Kingdom Science
   and Technology Facilities Council (STFC); The U.S. Department of Energy,
   the U.S. National Science Foundation, the State of Texas, and the State
   of Ohio.
NR 45
TC 373
Z9 374
U1 9
U2 135
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 13
PY 2010
VL 105
IS 25
AR 252302
DI 10.1103/PhysRevLett.105.252302
PG 11
WC Physics, Multidisciplinary
SC Physics
GA 713PR
UT WOS:000286750400008
PM 21231580
ER

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   Fisher, W
   Fisk, HE
   Fortner, M
   Fox, H
   Fuess, S
   Gadfort, T
   Garcia-Bellido, A
   Gavrilov, V
   Gay, P
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   Gerbaudo, D
   Gerber, CE
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   Wilson, G. W.
   Wimpenny, S. J.
   Wobisch, M.
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   Yamada, R.
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   Yasuda, T.
   Yatsunenko, Y. A.
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   Yin, H.
   Yip, K.
   Yoo, H. D.
   Youn, S. W.
   Yu, J.
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   Zhao, T.
   Zhou, B.
   Zhu, J.
   Zielinski, M.
   Zieminska, D.
   Zivkovic, L.
CA D0 Collaboration
TI Search for ZH -> l(+)l(-) b(b)over-bar Production in 4.2 fb(-1) of
   p(p)over-bar Collisions at root s=1.96 TeV
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID BOSON
AB We present a search for the standard model Higgs boson produced in association with a Z boson in 4: 2 fb(-1) of p (p) over bar collisions, collected with the D0 detector at the Fermilab Tevatron at root s = 1.96 TeV. Selected events contain one reconstructed Z -> e(+) e(-) or Z -> mu(+) mu(-) candidate and at least two jets, including at least one b-tagged jet. In the absence of an excess over the background expected from other standard model processes, limits on the ZH cross section multiplied by the branching ratios are set. The limit at M-H = 115 GeV is a factor of 5.9 larger than the standard model prediction.
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   [Kupco, A.; Lokajicek, M.] Acad Sci Czech Republic, Inst Phys, Ctr Particle Phys, Prague, Czech Republic.
   [Hoeneisen, B.] Univ San Francisco Quito, Quito, Ecuador.
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   [Bernhard, R.; Nilsen, H.] Univ Freiburg, Inst Phys, Freiburg, Germany.
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   [Buescher, V.; Fiedler, F.; Hohlfeld, M.; Wicke, D.] Johannes Gutenberg Univ Mainz, Inst Phys, D-6500 Mainz, Germany.
   [Nunnemann, T.; Sanders, M. P.] Univ Munich, Munich, Germany.
   [Schliephake, T.] Berg Univ Wuppertal, Fachbereich Phys, Wuppertal, Germany.
   [Beri, S. B.; Bhatnagar, V.; Dutt, S.; Joshi, J.; Kohli, J. M.] Panjab Univ, Chandigarh 160014, India.
   [Choudhary, B.; Dubey, A.; Naimuddin, M.; Nayyar, R.; Ranjan, K.; Shivpuri, R. K.] Univ Delhi, Delhi 110007, India.
   [Acharya, B. S.; Banerjee, S.; Mondal, N. K.] Tata Inst Fundamental Res, Bombay 400005, Maharashtra, India.
   [Cwiok, M.; Gruenewald, M. W.] Univ Coll Dublin, Dublin 2, Ireland.
   [Cho, S. W.; Choi, S.; Lee, H. S.; Lim, J. K.; Park, S. K.] Korea Univ, Korea Detector Lab, Seoul, South Korea.
   [Camacho-Perez, E.; Carrasco-Lizarraga, M. A.; Castilla-Valdez, H.; De La Cruz-Burelo, E.; Heredia-De La Cruz, I.; Luna-Garcia, R.; Magana-Villalba, R.; Martinez-Ortega, J.; Orduna, J.; Podesta-Lerma, P. L. M.; Sanchez-Hernandez, A.] CINVESTAV, Mexico City 14000, DF, Mexico.
   [van Leeuwen, W. M.] Univ Amsterdam, NIKHEF, Amsterdam, Netherlands.
   [van Leeuwen, W. M.] NIKHEF, FOM Inst, Amsterdam, Netherlands.
   [Ancu, L. S.; de Jong, S. J.; Filthaut, F.; Meijer, M. M.; Svoisky, P.] Radboud Univ Nijmegen, NIKHEF, NL-6525 ED Nijmegen, Netherlands.
   [Gavrilov, V.; Polozov, P.; Safronov, G.; Stolin, V.] Inst Theoret & Expt Phys, Moscow 117259, Russia.
   [Boos, E. E.; Bunichev, V.; Dudko, L. V.; Karmanov, D.; Kuzmin, V. A.; Merkin, M.; Perfilov, M.] Moscow MV Lomonosov State Univ, Moscow, Russia.
   [Bezzubov, V. A.; Denisov, S. P.; Evdokimov, V. N.; Kozelov, A. V.; Lipaev, V. V.; Popov, A. V.; Razumov, I.; Shchukin, A. A.; Stoyanova, D. A.; Vasilyev, I. A.] Inst High Energy Phys, Protvino, Russia.
   [Alkhazov, G.; Lobodenko, A.; Neustroev, P.; Obrant, G.; Scheglov, Y.; Uvarov, L.; Uvarov, S.] Petersburg Nucl Phys Inst, St Petersburg, Russia.
   [Asman, B.; Belanger-Champagne, C.] Uppsala Univ, Uppsala, Sweden.
   [Asman, B.; Belanger-Champagne, C.] Stockholm Univ, S-10691 Stockholm, Sweden.
   [Bertram, I.; Borissov, G.; Burdin, S.; Fox, H.; Love, P.; Ratoff, P. N.; Sopczak, A.; Williams, M. R. J.] Univ Lancaster, Lancaster LA1 4YB, England.
   [Beuselinck, R.; Buszello, C. P.; Christoudias, T.; Davies, G.; Hays, J.; Jesik, R.; Jonsson, P.; Osman, N.; Scanlon, T.; Vint, P.] Univ London Imperial Coll Sci Technol & Med, London SW7 2AZ, England.
   [Harder, K.; Owen, M.; Peters, K.; Peters, Y.; Rich, P.; Schwanenberger, C.; Soeldner-Rembold, S.; Takahashi, M.; Vesterinen, M.; Wyatt, T. R.; Yang, W-C] Univ Manchester, Manchester M13 9PL, Lancs, England.
   [Das, A.; Johns, K.; Varnes, E. W.] Univ Arizona, Tucson, AZ 85721 USA.
   [Ellison, J.; Heinson, A. P.; Li, L.; Padilla, M.; Wimpenny, S. J.] Univ Calif Riverside, Riverside, CA 92521 USA.
   [Adams, T.; Askew, A.; Bandurin, D. V.; Blessing, S.; Carrera, E.; Hagopian, S.; Hoang, T.; Wahl, H. D.] Florida State Univ, Tallahassee, FL 32306 USA.
   [Aoki, M.; Bagby, L.; Baldin, B.; Bartlett, J. F.; Bellantoni, L.; Bhat, P. C.; Boehnlein, A.; Bross, A.; Casey, B. C. K.; Cihangir, S.; Cooke, M.; Cooper, W. E.; Demarteau, M.; Denisov, D.; Desai, S.; Diehl, H. T.; Diesburg, M.; Elvira, V. D.; Fisk, H. E.; Fuess, S.; Ginther, G.; Greenlee, H.; Gruenendahl, S.; Gutierrez, G.; Illingworth, R.; Ito, A. S.; Johnson, M.; Jonckheere, A.; Juste, A.; Kasper, P. A.; Khalatyan, N.; Lee, W. M.; Li, Q. Z.; Lincoln, D.; Lipton, R.; Lyon, A. L.; Penning, B.; Podstavkov, V. M.; Rominsky, M.; Rubinov, P.; Sanghi, B.; Savage, G.; Sirotenko, V.; Stutte, L.; Verzocchi, M.; Weber, M.; Xie, Y.; Yamada, R.; Yasuda, T.; Ye, Z.; Youn, S. W.] Fermilab Natl Accelerator Lab, Batavia, IL 60510 USA.
   [Adams, M.; Gerber, C. E.; Strom, D.; Varelas, N.] Univ Illinois, Chicago, IL 60607 USA.
   [Blazey, G.; Chakraborty, D.; Dyshkant, A.; Fortner, M.; Hedin, D.; Menezes, D.; Uzunyan, S.] No Illinois Univ, De Kalb, IL 60115 USA.
   [Buchholz, D.; Kirby, M. H.; Schellman, H.; Yacoob, S.] Northwestern Univ, Evanston, IL 60208 USA.
   [Evans, H.; Lammers, S.; Parua, N.; Price, D.; Van Kooten, R.; Zieminska, D.] Indiana Univ, Bloomington, IN 47405 USA.
   [Parashar, N.] Purdue Univ Calumet, Hammond, IN 46323 USA.
   [Chan, K. M.; Hildreth, M. D.; Osta, J.; Ruchti, R.; Smirnov, D.; Warchol, J.; Wayne, M.] Univ Notre Dame, Notre Dame, IN 46556 USA.
   [Hauptman, J. M.; Lee, S. W.] Iowa State Univ, Ames, IA 50011 USA.
   [Baringer, P.; Bean, A.; Chen, G.; Clutter, J.; McGivern, C. L.; Sekaric, J.; Wilson, G. W.] Univ Kansas, Lawrence, KS 66045 USA.
   [Bolton, T. A.; Kaadze, K.; Maravin, Y.; Onoprienko, D.] Kansas State Univ, Manhattan, KS 66506 USA.
   [Arov, M.; Greenwood, Z. D.; Sawyer, L.; Wobisch, M.] Louisiana Tech Univ, Ruston, LA 71272 USA.
   [Eno, S.; Ferbel, T.; Wetstein, M.] Univ Maryland, College Pk, MD 20742 USA.
   [Bose, T.] Boston Univ, Boston, MA 02215 USA.
   [Alverson, G.; Barberis, E.; Facini, G.; Haley, J.; Hesketh, G.; Wood, D. R.] Northeastern Univ, Boston, MA 02115 USA.
   [Alton, A.; Herner, K.; Neal, H. A.; Qian, J.; Xu, C.; Zhou, B.; Zhu, J.] Univ Michigan, Ann Arbor, MI 48109 USA.
   [Abolins, M.; Benitez, J. A.; Brock, R.; Edmunds, D.; Fisher, W.; Geng, W.; Kraus, J.; Linnemann, J.; Piper, J.; Schwienhorst, R.] Michigan State Univ, E Lansing, MI 48824 USA.
   [Melnitchouk, A.; Quinn, B.] Univ Mississippi, University, MS 38677 USA.
   [Bloom, K.; Claes, D.; DeVaughan, K.; Dominguez, A.; Eads, M.; Johnston, D.; Katsanos, I.; Malik, S.; Snow, G. R.] Univ Nebraska, Lincoln, NE 68588 USA.
   [Atramentov, O.; Duggan, D.; Gershtein, Y.] Rutgers State Univ, Piscataway, NJ 08855 USA.
   [Gerbaudo, D.; Tully, C.] Princeton Univ, Princeton, NJ 08544 USA.
   [Iashvili, I.; Jain, S.; Kharchilava, A.; Kumar, A.; Smith, K. J.] SUNY Buffalo, Buffalo, NY 14260 USA.
   [Brooijmans, G.; Haas, A.; Parsons, J.; Tuts, P. M.; Zivkovic, L.] Columbia Univ, New York, NY 10027 USA.
   [Demina, R.; Ferbel, T.; Garcia-Bellido, A.; Ginther, G.; Harel, A.; Petrillo, G.; Slattery, P.; Wang, M. H. L. S.; Zielinski, M.] Univ Rochester, Rochester, NY 14627 USA.
   [Boline, D.; Chakrabarti, S.; Grannis, P. D.; Guo, F.; Guo, J.; Hobbs, J. D.; McCarthy, R.; Rijssenbeek, M.; Schamberger, R. D.; Strauss, E.; Tsybychev, D.] SUNY Stony Brook, Stony Brook, NY 11794 USA.
   [Begel, M.; Evdokimov, A.; Gadfort, T.; Patwa, A.; Pleier, M-A; Protopopescu, S.; Snyder, S.; Yip, K.] Brookhaven Natl Lab, Upton, NY 11973 USA.
   [Snow, J.] Langston Univ, Langston, OK 73050 USA.
   [Abbott, B.; Gutierrez, P.; Hossain, S.; Severini, H.; Skubic, P.; Strauss, M.] Univ Oklahoma, Norman, OK 73019 USA.
   [Hegab, H.; Khanov, A.; Rizatdinova, F.] Oklahoma State Univ, Stillwater, OK 74078 USA.
   [Cho, D. K.; Cutts, D.; Ferapontov, A. V.; Heintz, U.; Jabeen, S.; Khatidze, D.; Landsberg, G.; Narain, M.; Pangilinan, M.; Parihar, V.; Partridge, R.; Yoo, H. D.] Brown Univ, Providence, RI 02912 USA.
   [Brandt, A.; De, K.; Sosebee, M.; Spurlock, B.; White, A.; Yu, J.] Univ Texas Arlington, Arlington, TX 76019 USA.
   [Kehoe, R.; Renkel, P.] So Methodist Univ, Dallas, TX 75275 USA.
   [Chandra, A.; Corcoran, M.; Mackin, D.; Prewitt, M.] Rice Univ, Houston, TX 77005 USA.
   [Buehler, M.; Hirosky, R.; Mulhearn, M.; Zelitch, S.] Univ Virginia, Charlottesville, VA 22901 USA.
   [BackusMayes, J.; Burnett, T. H.; Dorland, T.; Goussiou, A.; Lubatti, H. J.; Schlobohm, S.; Watts, G.; Zhao, T.] Univ Washington, Seattle, WA 98195 USA.
RP Abazov, VM (reprint author), Joint Inst Nucl Res, Dubna, Russia.
RI bu, xuebing/D-1121-2012; Perfilov, Maxim/E-1064-2012; Merkin,
   Mikhail/D-6809-2012; Dudko, Lev/D-7127-2012; Santos, Angelo/K-5552-2012;
   Boos, Eduard/D-9748-2012; Novaes, Sergio/D-3532-2012; Gutierrez,
   Phillip/C-1161-2011; Mercadante, Pedro/K-1918-2012; Yip,
   Kin/D-6860-2013; Bolton, Tim/A-7951-2012; Wimpenny, Stephen/K-8848-2013;
   Fisher, Wade/N-4491-2013; De, Kaushik/N-1953-2013; Ancu, Lucian
   Stefan/F-1812-2010; Alves, Gilvan/C-4007-2013; Deliot,
   Frederic/F-3321-2014; Sharyy, Viatcheslav/F-9057-2014; Lokajicek,
   Milos/G-7800-2014; Kupco, Alexander/G-9713-2014; Kozelov,
   Alexander/J-3812-2014; Christoudias, Theodoros/E-7305-2015; Guo,
   Jun/O-5202-2015; Gerbaudo, Davide/J-4536-2012
OI Dudko, Lev/0000-0002-4462-3192; Novaes, Sergio/0000-0003-0471-8549; Yip,
   Kin/0000-0002-8576-4311; Wimpenny, Stephen/0000-0003-0505-4908; De,
   Kaushik/0000-0002-5647-4489; Ancu, Lucian Stefan/0000-0001-5068-6723;
   Sharyy, Viatcheslav/0000-0002-7161-2616; Christoudias,
   Theodoros/0000-0001-9050-3880; Guo, Jun/0000-0001-8125-9433; Gerbaudo,
   Davide/0000-0002-4463-0878
FU DOE; NSF (USA); CEA; CNRS/IN2P3 (France); FASI, Rosatom and RFBR
   (Russia); CNPq; FAPERJ; FAPESP; FUNDUNESP (Brazil); DAE; DST (India);
   Colciencias (Colombia); CONACyT (Mexico); KRF and KOSEF (Korea);
   CONICET; UBACyT (Argentina); FOM (The Netherlands); STFC; Royal Society
   (U. K.); MSMT; GACR (Czech Republic); CRC; NSERC (Canada); BMBF; DFG
   (Germany); SFI (Ireland); The Swedish Research Council (Sweden); CAS;
   CNSF (China)
FX We thank the staffs at Fermilab and collaborating institutions, and
   acknowledge support from the DOE and NSF (USA); CEA and CNRS/IN2P3
   (France); FASI, Rosatom and RFBR (Russia); CNPq, FAPERJ, FAPESP and
   FUNDUNESP (Brazil); DAE and DST (India); Colciencias (Colombia); CONACyT
   (Mexico); KRF and KOSEF (Korea); CONICET and UBACyT (Argentina); FOM
   (The Netherlands); STFC and the Royal Society (U. K.); MSMT and GACR
   (Czech Republic); CRC Program and NSERC (Canada); BMBF and DFG
   (Germany); SFI (Ireland); The Swedish Research Council (Sweden); and CAS
   and CNSF (China).
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SN 0031-9007
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J9 PHYS REV LETT
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PD DEC 13
PY 2010
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ER

PT J
AU Evans, PG
   Bennink, RS
   Grice, WP
   Humble, TS
   Schaake, J
AF Evans, P. G.
   Bennink, R. S.
   Grice, W. P.
   Humble, T. S.
   Schaake, J.
TI Bright Source of Spectrally Uncorrelated Polarization-Entangled Photons
   with Nearly Single-Mode Emission
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
AB We present results of a bright polarization-entangled photon source operating at 1552 nm via type-II collinear degenerate spontaneous parametric down-conversion in a periodically poled potassium titanyl phosphate crystal. We report a conservative inferred pair generation rate of 123 000 pairs/s/mW into collection modes. Minimization of spectral and spatial entanglement was achieved by group velocity matching the pump, signal, and idler modes and through properly focusing the pump beam. By utilizing a pair of calcite beam displacers, we are able to overlap photons from adjacent down-conversion processes to obtain polarization-entanglement visibility of 94.7 + / - 1.1% with accidentals subtracted.
C1 [Evans, P. G.; Bennink, R. S.; Grice, W. P.; Humble, T. S.] Oak Ridge Natl Lab, Ctr Quantum Informat Sci, Comp & Computat Sci Directorate, Oak Ridge, TN 37831 USA.
   [Schaake, J.] Univ Tennessee, Dept Phys & Astron, Knoxville, TN 37996 USA.
RP Evans, PG (reprint author), Oak Ridge Natl Lab, Ctr Quantum Informat Sci, Comp & Computat Sci Directorate, Oak Ridge, TN 37831 USA.
EM evanspg@ornl.gov
RI Grice, Warren/L-8466-2013; 
OI Grice, Warren/0000-0003-4266-4692
FU Oak Ridge National Laboratory; U. S. Department of Energy
   [De-AC05-00OR22725]
FX We thank M. Fiorentino and A. Migdall for enlightening discussions.
   Research is sponsored by the Laboratory Directed Research and
   Development Program of Oak Ridge National Laboratory, managed by
   UT-Battelle, LLC for the U. S. Department of Energy under Contract No.
   De-AC05-00OR22725.
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PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 13
PY 2010
VL 105
IS 25
AR 253601
DI 10.1103/PhysRevLett.105.253601
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713PR
UT WOS:000286750400012
PM 21231588
ER

PT J
AU Salafranca, J
   Okamoto, S
AF Salafranca, Juan
   Okamoto, Satoshi
TI Unconventional Proximity Effect and Inverse Spin-Switch Behavior in a
   Model Manganite-Cuprate-Manganite Trilayer System
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID SUPERLATTICES; INTERFACE; RECONSTRUCTION; INSULATOR
AB The proximity effect in a model manganite-cuprate system is investigated theoretically. We consider a situation in which spin-polarized electrons in manganite layers antiferromagnetically couple with electrons in cuprate layers as observed experimentally. The effect of the interfacial magnetic coupling is found to be much stronger than the injection of spin-polarized electrons into the cuprate region. As a result, the superconducting transition temperature depends on the thickness of the cuprate layer significantly. Since the magnetic coupling creates negative polarization, an applied magnetic field and the negative polarization compete, resulting in the inverse spin-switch behavior where the superconducting transition temperature is increased by applying a magnetic field.
C1 [Salafranca, Juan] Univ Tennessee, Dept Phys & Astron, Knoxville, TN 37996 USA.
   [Salafranca, Juan; Okamoto, Satoshi] Oak Ridge Natl Lab, Mat Sci & Technol Div, Oak Ridge, TN 37831 USA.
RP Salafranca, J (reprint author), Univ Tennessee, Dept Phys & Astron, Knoxville, TN 37996 USA.
RI Okamoto, Satoshi/G-5390-2011; Salafranca, Juan/H-7494-2013; Liu,
   Yaohua/B-2529-2009
OI Okamoto, Satoshi/0000-0002-0493-7568; Liu, Yaohua/0000-0002-5867-5065
FU NSF [DMR-0706020]; Materials Sciences and Engineering Division, Office
   of Basic Energy Sciences; US DOE
FX The authors thank J. Santamaria, M. Varela, and J. Chakhalian for their
   enlightening discussions. This work was supported by the NSF Grant No.
   DMR-0706020 (J. S.) and by the Materials Sciences and Engineering
   Division, Office of Basic Energy Sciences, the US DOE (S. O.).
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PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 13
PY 2010
VL 105
IS 25
AR 256804
DI 10.1103/PhysRevLett.105.256804
PG 4
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SC Physics
GA 713PR
UT WOS:000286750400023
PM 21231610
ER

PT J
AU Sun, X
   Intrator, TP
   Dorf, L
   Sears, J
   Furno, I
   Lapenta, G
AF Sun, X.
   Intrator, T. P.
   Dorf, L.
   Sears, J.
   Furno, I.
   Lapenta, G.
TI Flux Rope Dynamics: Experimental Study of Bouncing and Merging
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID MAGNETIC ISLANDS; RECONNECTION; INSTABILITY; COALESCENCE; TUBES
AB We show experimentally for the first time that two mutually attracting flux ropes may bounce back instead of merging together, leading to a variety of dynamics not expected from a two-dimensional model. Attraction forces due to flux rope currents compete with repulsion from field line bending of in-plane and out-of-plane magnetic fields and elastic plasma compression. Bouncing dynamics occurs if the line-bending force due to an out-of-plane field dominates. Otherwise, the ropes merge. Further reduction in the field line-bending force results in violently erratic magnetic states.
C1 [Sun, X.; Intrator, T. P.; Dorf, L.; Sears, J.; Furno, I.; Lapenta, G.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Lapenta, G.] Katholieke Univ Leuven, Ctr Plasma Astrofys, Louvain, Belgium.
RP Sun, X (reprint author), Los Alamos Natl Lab, Mail Stop E526, Los Alamos, NM 87545 USA.
OI Lapenta, Giovanni/0000-0002-3123-4024
FU Los Alamos Directed Research & Development, LANS [DE-AC52-06NA25396];
   Center for Magnetic Self Organization; SOTERIA project [218816]
FX Supported by Los Alamos Directed Research & Development, LANS Contract
   No. DE-AC52-06NA25396, Center for Magnetic Self Organization, and Grant
   No. 218816 (SOTERIA project, http://www.soteria-space.eu).
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J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 13
PY 2010
VL 105
IS 25
AR 255001
DI 10.1103/PhysRevLett.105.255001
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SC Physics
GA 713PR
UT WOS:000286750400017
PM 21231595
ER

PT J
AU Wimmer, K
   Kroll, T
   Krucken, R
   Bildstein, V
   Gernhauser, R
   Bastin, B
   Bree, N
   Diriken, J
   Van Duppen, P
   Huyse, M
   Patronis, N
   Vermaelen, P
   Voulot, D
   de Walle, JV
   Wenander, F
   Fraile, LM
   Chapman, R
   Hadinia, B
   Orlandi, R
   Smith, JF
   Lutter, R
   Thirolf, PG
   Labiche, M
   Blazhev, A
   Kalkuhler, M
   Reiter, P
   Seidlitz, M
   Warr, N
   Macchiavelli, AO
   Jeppesen, HB
   Fiori, E
   Georgiev, G
   Schrieder, G
   Das Gupta, S
   Lo Bianco, G
   Nardelli, S
   Butterworth, J
   Johansen, J
   Riisager, K
AF Wimmer, K.
   Kroell, T.
   Kruecken, R.
   Bildstein, V.
   Gernhaeuser, R.
   Bastin, B.
   Bree, N.
   Diriken, J.
   Van Duppen, P.
   Huyse, M.
   Patronis, N.
   Vermaelen, P.
   Voulot, D.
   de Walle, J. Van
   Wenander, F.
   Fraile, L. M.
   Chapman, R.
   Hadinia, B.
   Orlandi, R.
   Smith, J. F.
   Lutter, R.
   Thirolf, P. G.
   Labiche, M.
   Blazhev, A.
   Kalkuehler, M.
   Reiter, P.
   Seidlitz, M.
   Warr, N.
   Macchiavelli, A. O.
   Jeppesen, H. B.
   Fiori, E.
   Georgiev, G.
   Schrieder, G.
   Das Gupta, S.
   Lo Bianco, G.
   Nardelli, S.
   Butterworth, J.
   Johansen, J.
   Riisager, K.
TI Discovery of the Shape Coexisting 0(+) State in Mg-32 by a Two Neutron
   Transfer Reaction
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID SHELL-MODEL; BETA-DECAY; REX-ISOLDE; DESCENDANTS; ISOTOPES; NUCLEI
AB The "island of inversion'' nucleus Mg-32 has been studied by a (t, p) two neutron transfer reaction in inverse kinematics at REX-ISOLDE. The shape coexistent excited 0(+) state in Mg-32 has been identified by the characteristic angular distribution of the protons of the Delta L = 0 transfer. The excitation energy of 1058 keV is much lower than predicted by any theoretical model. The low gamma-ray intensity observed for the decay of this 0(+) state indicates a lifetime of more than 10 ns. Deduced spectroscopic amplitudes are compared with occupation numbers from shell-model calculations.
C1 [Wimmer, K.; Kroell, T.; Kruecken, R.; Bildstein, V.; Gernhaeuser, R.] Tech Univ Munich, Phys Dept E12, D-85748 Garching, Germany.
   [Bastin, B.; Bree, N.; Diriken, J.; Van Duppen, P.; Huyse, M.; Patronis, N.; Vermaelen, P.] Katholieke Univ Leuven, Inst Kern Stralingsfys, B-3001 Louvain, Belgium.
   [Voulot, D.; de Walle, J. Van; Wenander, F.] CERN, CH-1211 Geneva 23, Switzerland.
   [Fraile, L. M.] Univ Complutense, Dept Fis Atom Mol & Nucl, Madrid 28049, Spain.
   [Chapman, R.; Hadinia, B.; Orlandi, R.; Smith, J. F.] Univ W Scotland, Sch Sci & Engn, Paisley PA1 2BE, Renfrew, Scotland.
   [Lutter, R.; Thirolf, P. G.] Univ Munich, Fak Phys, D-85748 Garching, Germany.
   [Labiche, M.] SERC, Daresbury Lab, Warrington WA4 4AD, Cheshire, England.
   [Blazhev, A.; Kalkuehler, M.; Reiter, P.; Seidlitz, M.; Warr, N.] Univ Cologne, Inst Kernphys, D-50937 Cologne, Germany.
   [Macchiavelli, A. O.; Jeppesen, H. B.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Fiori, E.; Georgiev, G.] Univ Paris 11, CSNSM, IN2P3, CNRS, F-91405 Orsay, France.
   [Schrieder, G.] Tech Univ Darmstadt, Inst Kernphys, D-64289 Darmstadt, Germany.
   [Das Gupta, S.; Lo Bianco, G.; Nardelli, S.] Univ Camerino, Dipartimento Fis, I-62032 Camerino, Italy.
   [Butterworth, J.] Univ York, Dept Phys, Nucl Phys Grp, York YO10 5DD, N Yorkshire, England.
   [Johansen, J.; Riisager, K.] Aarhus Univ, DK-8000 Aarhus C, Denmark.
RP Wimmer, K (reprint author), Tech Univ Munich, Phys Dept E12, D-85748 Garching, Germany.
RI Fraile, Luis/B-8668-2011; Georgiev, Georgi/C-5110-2008; Kruecken,
   Reiner/A-1640-2013; Diriken, Jan/G-4724-2010
OI Fraile, Luis/0000-0002-6281-3635; Georgiev, Georgi/0000-0003-1467-1764;
   Kruecken, Reiner/0000-0002-2755-8042; Diriken, Jan/0000-0002-3314-4620
FU BMBF [06MT238, 06MT9156, 06KY9136I, 06DA9036I, 06DA9041I]; DFG Cluster
   of Excellence Origin and Structure of the Universe; EC
   [RII3-CT-2004-506065]; FWO-Vlaanderen (Belgium) [GOA/2004/03, IAP
   P6/23]; HIC for FAIR; US-DOE [DE-AC02-05CH11231]
FX This work was supported by the BMBF under contracts 06MT238, 06MT9156,
   06KY9136I, 06DA9036I, 06DA9041I, by the DFG Cluster of Excellence Origin
   and Structure of the Universe, by the EC within the FP6 through
   I3-EURONS (contract no. RII3-CT-2004-506065), by FWO-Vlaanderen,
   GOA/2004/03 and IAP P6/23 (Belgium), HIC for FAIR and US-DOE under
   contract number DE-AC02-05CH11231. We would like to thank A. Dorsival
   and D. Carminati (ISOLDE/CERN) for the help with the target.
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AR 252501
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UT WOS:000286750400010
PM 21231582
ER

PT J
AU Cote, CL
   Boileau, F
   Roy, V
   Ouellet, M
   Levasseur, C
   Morency, MJ
   Cooke, JEK
   Seguin, A
   MacKay, JJ
AF Cote, Caroline L.
   Boileau, Francis
   Roy, Vicky
   Ouellet, Mario
   Levasseur, Caroline
   Morency, Marie-Josee
   Cooke, Janice E. K.
   Seguin, Armand
   MacKay, John J.
TI Gene family structure, expression and functional analysis of HD-Zip III
   genes in angiosperm and gymnosperm forest trees
SO BMC PLANT BIOLOGY
LA English
DT Article
ID CDNA MICROARRAY DATA; XYLEM DEVELOPMENT; HOMEOBOX GENE; LAND PLANTS;
   ARABIDOPSIS; EVOLUTION; PROTEIN; DIFFERENTIATION; POPLAR; GROWTH
AB Background: Class III Homeodomain Leucine Zipper (HD-Zip III) proteins have been implicated in the regulation of cambium identity, as well as primary and secondary vascular differentiation and patterning in herbaceous plants. They have been proposed to regulate wood formation but relatively little evidence is available to validate such a role. We characterised and compared HD-Zip III gene family in an angiosperm tree, Populus spp. (poplar), and the gymnosperm Picea glauca (white spruce), representing two highly evolutionarily divergent groups.
   Results: Full-length cDNA sequences were isolated from poplar and white spruce. Phylogenetic reconstruction indicated that some of the gymnosperm sequences were derived from lineages that diverged earlier than angiosperm sequences, and seem to have been lost in angiosperm lineages. Transcript accumulation profiles were assessed by RT-qPCR on tissue panels from both species and in poplar trees in response to an inhibitor of polar auxin transport. The overall transcript profiles HD-Zip III complexes in white spruce and poplar exhibited substantial differences, reflecting their evolutionary history. Furthermore, two poplar sequences homologous to HD-Zip III genes involved in xylem development in Arabidopsis and Zinnia were over-expressed in poplar plants. PtaHB1 overexpression produced noticeable effects on petiole and primary shoot fibre development, suggesting that PtaHB1 is involved in primary xylem development. We also obtained evidence indicating that expression of PtaHB1 affected the transcriptome by altering the accumulation of 48 distinct transcripts, many of which are predicted to be involved in growth and cell wall synthesis. Most of them were down-regulated, as was the case for several of the poplar HD-Zip III sequences. No visible physiological effect of over-expression was observed on PtaHB7 transgenic trees, suggesting that PtaHB1 and PtaHB7 likely have distinct roles in tree development, which is in agreement with the functions that have been assigned to close homologs in herbaceous plants.
   Conclusions: This study provides an overview of HD-zip III genes related to woody plant development and identifies sequences putatively involved in secondary vascular growth in angiosperms and in gymnosperms. These gene sequences are candidate regulators of wood formation and could be a source of molecular markers for tree breeding related to wood properties.
C1 [Cote, Caroline L.; Boileau, Francis; Roy, Vicky; MacKay, John J.] Univ Laval, Dept Sci Bois & Foret, Quebec City, PQ G1V 0A6, Canada.
   [Levasseur, Caroline; Morency, Marie-Josee; Seguin, Armand] Laurentian Forestry Ctr, Quebec City, PQ G1V 4C7, Canada.
   [Ouellet, Mario] BEI, Joint Bioenergy Inst, Emeryville, CA 94608 USA.
   [Cooke, Janice E. K.] Univ Alberta, Dept Sci Biol, Edmonton, AB T6G 2E9, Canada.
RP MacKay, JJ (reprint author), Univ Laval, Dept Sci Bois & Foret, 2405 Rue Terrasse, Quebec City, PQ G1V 0A6, Canada.
EM john.mackay@sbf.ulaval.ca
RI Cooke, Janice /G-5906-2011; MacKay, John/M-6978-2014
OI Cooke, Janice /0000-0002-4990-628X; MacKay, John/0000-0002-4883-195X
FU Genome Canada; Genome Quebec; Fonds Quebecois de Recherche sur la Nature
   et les Technologies (FQRNT)
FX The authors thank Mr. Jeffrey Stott, Dr. Rob Holt and Dr. Marco Marra
   (Genome Sciences Centre, Vancouver, BC) for EST sequencing. Dr. Charles
   Paule (Univ. of Minnesota), Dr. Nathalie Pavy, Mr Hugo Berube, Dr. Brian
   Boyle and Mr Sebastien Caron (Univ. Laval) for bioinformatics and
   assistance with microarray development and analysis methods, Dr. Daniel
   Tessier and Ms. Tracy Rigby (Biotechnology Research Institute, NRC,
   Montreal, QC) for production of the microarray, and Dr. Bill Parsons
   (Univ. of Sherbrooke) and Dr. Louis Bernatchez (Univ. Laval) for
   manuscript reviewing. Financial support was received from Genome Canada
   and Genome Quebec for the Arborea project (AS, JM), from the Fonds
   Quebecois de Recherche sur la Nature et les Technologies (FQRNT, JM).
NR 65
TC 21
Z9 27
U1 1
U2 25
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2229
J9 BMC PLANT BIOL
JI BMC Plant Biol.
PD DEC 11
PY 2010
VL 10
AR 273
DI 10.1186/1471-2229-10-273
PG 17
WC Plant Sciences
SC Plant Sciences
GA 698IJ
UT WOS:000285587200001
PM 21143995
ER

PT J
AU Zaharia, S
   Jordanova, VK
   Welling, D
   Toth, G
AF Zaharia, Sorin
   Jordanova, V. K.
   Welling, D.
   Toth, G.
TI Self-consistent inner magnetosphere simulation driven by a global MHD
   model
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID RING CURRENT; MAGNETIC-FIELD; ELECTRIC-FIELDS; CURRENT SYSTEMS; TAIL
   CURRENT; GEOSYNCHRONOUS ORBIT; ENERGETIC PARTICLES; PLASMA PRESSURE; ION
   COMPOSITION; SOLAR-WIND
AB We present results from a one-way coupling between the kinetic Ring Current Atmosphere Interactions Model with Self-Consistent B field (RAM-SCB) and the Space Weather Modeling Framework (SWMF). RAM-SCB obtains plasma distribution and magnetic field at model boundaries from the Block Adaptive Tree Solar Wind Roe Upwind Scheme (BATS-R-US) magnetohydrodynamics (MHD) model and convection potentials from the Ridley Ionosphere Model within SWMF. We simulate the large geomagnetic storm of 31 August 2005 (minimum SYM-H of -116 nT). Comparing SWMF output with Los Alamos National Laboratory geostationary satellite data, we find SWMF plasma to be too cold and dense if assumed to consist only of protons; this problem is alleviated if heavier ions are considered. With SWMF inputs, we find that RAM-SCB reproduces well storm time magnetosphere features: ring current morphology, dusk side peak, pitch angle anisotropy, and total energy. The RAM-SCB ring current and Dst are stronger than the SWMF ones and reproduce observations much better. The calculated field-aligned currents (FAC) compare reasonably well with 2 h averaged pictures from Iridium satellite data. As the ring current peak rotates duskward in the storm main phase, the region 2 FACs rotate toward noon, a feature also seen in observations. Finally, the RAM-SCB magnetic field outperforms both the dipole and the BATS-R-US field at Cluster and Polar spacecraft locations. This study shows the importance of a kinetic self-consistent approach and the sensitive dependence of the storm time inner magnetosphere on plasma sheet conditions and the cross polar cap potential. The study showcases the RAM-SCB capability as an inner magnetosphere module coupled with a global MHD model.
C1 [Zaharia, Sorin; Jordanova, V. K.; Welling, D.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Toth, G.] Univ Michigan, Ctr Space Environm Modeling, Ann Arbor, MI 48109 USA.
RP Zaharia, S (reprint author), Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
EM szaharia@lanl.gov
RI Toth, Gabor/B-7977-2013; Welling, Daniel/C-1970-2013; 
OI Toth, Gabor/0000-0002-5654-9823; Jordanova, Vania/0000-0003-0475-8743
FU NASA [NNH07AG24I, NNH09AL06I]; National Science Foundation
   [ATM-0902941]; U.S. Department of Energy
FX This work was supported by NASA Living With a Star TR&T (grants
   NNH07AG24I and NNH09AL06I), the National Science Foundation (grant
   ATM-0902941), and the U.S. Department of Energy. The authors thank Aaron
   Ridley for providing the AMIE data used in this study. The authors also
   acknowledge the use of the PSPLINE routines from the National Transport
   Code Collaboration and of Iridium-derived field-aligned currents,
   courtesy of B. Anderson. The solar wind ACE and WIND data, as well as
   the Dst, SYM-H, and Kp indices, were obtained from the NASA GSFC/SPDF
   OMNIWeb interface at http://omniweb.gsfc.nasa.gov. Polar and Cluster
   magnetic field data were obtained from the NASA Coordinated Data
   Analysis Web service (CDAWeb) at http://cdaweb.gsfc.nasa.gov.
NR 78
TC 19
Z9 19
U1 0
U2 1
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-9380
EI 2169-9402
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 11
PY 2010
VL 115
AR A12228
DI 10.1029/2010JA015915
PG 21
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 693WR
UT WOS:000285256600005
ER

PT J
AU Rehak, P
   Carini, G
   Chen, W
   De Geronimo, G
   Fried, J
   Li, Z
   Pinelli, DA
   Siddons, DP
   Vernon, E
   Gaskin, JA
   Ramsey, BD
AF Rehak, Pavel
   Carini, Gabriella
   Chen, Wei
   De Geronimo, Gianluigi
   Fried, Jack
   Li, Zheng
   Pinelli, Donald A.
   Siddons, D. Peter
   Vernon, Emerson
   Gaskin, Jessica A.
   Ramsey, Brian D.
TI Arrays of silicon drift detectors for an extraterrestrial X-ray
   spectrometer
SO NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS
   SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT
LA English
DT Article; Proceedings Paper
CT 11th European Symposium on Semiconductor Detectors
CY JUN 07-11, 2009
CL Wildbad Kreuth, GERMANY
SP PNSensor GmbH, PNDetector GmbH, XIA LLC
DE SDD; Spectrometer; Detector; Hexagonal; Spiral; ASIC; Array; X-ray;
   Junction; Field; Silicon; Drift
AB Arrays of Silicon Drift Detectors (SDD) were designed produced and tested These arrays are the central part of an X-Ray Spectrometer (XRS) for measuring the abundances of light surface elements (C-Fe) fluoresced by ambient radiation on the investigated celestial object The basic building element (or cell) of the arrays consists of a single hexagonal SDD Signal electrons drift toward the center of the hexagon where a very low capacitance anode is located The hexagonal shape of an individual SOD allows for a continuous covering of large detection areas of various shapes To match the number of SOD cells with the external Application Specific Integrated Circuit (ASIC) two arrays one with 16 and another with 64 cells were developed One side of SDDs called the window side is a continuous thin rectifying junction through which the X-ray radiation enters the detector The opposite side called the device side contains electron collecting anodes as well as all other electrodes needed to generate the drift field and to sink leakage current produced on Si-SiO2 interface On both sides of the detector array there is a system of guard rings which smoothly adjusts the voltage of the boundary cells to the ground potential of the silicon outside the sensitive volume The drift voltage inside the detector is generated by an implanted rectifying contact which forms a hexagonal spiral This spiral produces the main valley where signal electrons drift as well as the voltage divider to produce the drift field System performance is shown by a spectrum of Mn X-rays produced by the decay of Fe-55 (C) 2010 Elsevier B V All rights reserved
C1 [Rehak, Pavel; Carini, Gabriella; Chen, Wei; De Geronimo, Gianluigi; Fried, Jack; Li, Zheng; Pinelli, Donald A.; Siddons, D. Peter; Vernon, Emerson] Brookhaven Natl Lab, Upton, NY 11973 USA.
   [Gaskin, Jessica A.; Ramsey, Brian D.] NASA, George C Marshall Space Flight Ctr, Huntsville, AL 35812 USA.
RP Chen, W (reprint author), Brookhaven Natl Lab, Upton, NY 11973 USA.
NR 5
TC 12
Z9 12
U1 1
U2 7
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-9002
J9 NUCL INSTRUM METH A
JI Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc.
   Equip.
PD DEC 11
PY 2010
VL 624
IS 2
BP 260
EP 264
DI 10.1016/j.nima.2010.05.058
PG 5
WC Instruments & Instrumentation; Nuclear Science & Technology; Physics,
   Nuclear; Physics, Particles & Fields
SC Instruments & Instrumentation; Nuclear Science & Technology; Physics
GA 695LA
UT WOS:000285370400005
ER

PT J
AU Verbitskaya, E
   Eremin, V
   Zabrodskii, A
   Li, Z
   Harkonen, J
AF Verbitskaya, E.
   Eremin, V.
   Zabrodskii, A.
   Li, Z.
   Harkonen, J.
TI The impact of neutral base region on the collected charge in heavily
   irradiated silicon detectors
SO NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS
   SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT
LA English
DT Article; Proceedings Paper
CT 11th European Symposium on Semiconductor Detectors
CY JUN 07-11, 2009
CL Wildbad Kreuth, GERMANY
SP PNSensor GmbH, PNDetector GmbH, XIA LLC
DE Silicon detector; Electric field distribution; Charge collection;
   Radiation hardness
ID MAGNETIC CZOCHRALSKI SILICON; CM(-2); SIGN
AB The collected charge in S-1 detectors irradiated up to the fluences of Super-LHC range (10(16) n(eq) cm(-2)) is calculated using an approach of double peak electric field distribution with an active base region In the calculations the base region located between the space charge regions is considered as an active element of the detector structure in which the electric field is non-zero and depends on the irradiation fluence With this advanced approach the collected charge vs fluence dependences is calculated and compared to those obtained using a standard linear electric field in an irradiated S-1 detector The study is carried out for pad detectors and for strip detectors with a strip pitch of 80 mu m typical for ATLAS topology It is shown that at the fluence >= 10(15) cm(-2) the electric field in the active base stimulates an increase of the collected charge by a factor of 1 3 and 4 2 in strip and pad detectors respectively The values of the collected charge calculated in the assumption of the double peak electric field and active base are still smaller than the experimental data This suggests that additional effects may contribute to the collected charge that is under study (C) 2010 Elsevier B V All rights reserved
C1 [Verbitskaya, E.; Eremin, V.; Zabrodskii, A.] Russian Acad Sci, AF Ioffe Phys Tech Inst, St Petersburg 196140, Russia.
   [Li, Z.] Brookhaven Natl Lab, Upton, NY 11973 USA.
   [Harkonen, J.] CERN PH, Helsinki Inst Phys, Geneva, Switzerland.
RP Verbitskaya, E (reprint author), Russian Acad Sci, AF Ioffe Phys Tech Inst, St Petersburg 196140, Russia.
RI Zabrodskii, Andrei/C-1423-2011; Verbitskaya, Elena/D-1521-2014
NR 21
TC 4
Z9 4
U1 0
U2 2
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-9002
J9 NUCL INSTRUM METH A
JI Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc.
   Equip.
PD DEC 11
PY 2010
VL 624
IS 2
BP 419
EP 424
DI 10.1016/j.nima.2010.03.136
PG 6
WC Instruments & Instrumentation; Nuclear Science & Technology; Physics,
   Nuclear; Physics, Particles & Fields
SC Instruments & Instrumentation; Nuclear Science & Technology; Physics
GA 695LA
UT WOS:000285370400034
ER

PT J
AU Battaglia, M
   Bisello, D
   Contarato, D
   Denes, P
   Doering, D
   Giubilato, P
   Kim, TS
   Mattiazzo, S
   Radmilovic, V
   Zalusky, S
AF Battaglia, Marco
   Bisello, Dario
   Contarato, Devis
   Denes, Peter
   Doering, Dionisio
   Giubilato, Piero
   Kim, Tae Sung
   Mattiazzo, Serena
   Radmilovic, Velimir
   Zalusky, Sarah
TI Radiation hardness studies on CMOS monolithic pixel sensors
SO NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS
   SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT
LA English
DT Article; Proceedings Paper
CT 11th European Symposium on Semiconductor Detectors
CY JUN 07-11, 2009
CL Wildbad Kreuth, GERMANY
SP PNSensor GmbH, PNDetector GmbH, XIA LLC
DE Monolithic active pixel sensors; Silicon pixel detectors; Radiation
   tolerance
ID ELECTRON-MICROSCOPY
AB This paper presents irradiation studies performed on a CMOS monolithic pixel sensor prototype implementing different optimizations of the pixel cell aimed at a superior radiation tolerance Irradiations with 200 key electrons up to a total dose of 1 1 Mrad have been performed in view of the utilization of such a design in Transmission Electron Microscopy (TEM) applications Comparative irradiations were performed with 29 MeV protons up to a 2 Mrad total dose and with 1-14 MeV neutrons up to fluences in excess of 10(13) n(eq) cm(-2) Experimental results show an improved performance of pixels designed with Enclosed Layout Transistor (ELT) rules and an optimized layout of the charge collecting diodes (C) 2010 Elsevier B V All rights reserved
C1 [Battaglia, Marco; Contarato, Devis; Denes, Peter; Doering, Dionisio; Giubilato, Piero; Kim, Tae Sung; Radmilovic, Velimir; Zalusky, Sarah] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Battaglia, Marco; Zalusky, Sarah] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Bisello, Dario; Giubilato, Piero; Mattiazzo, Serena] Univ Padua, Dipartimento Fis, I-35131 Padua, Italy.
   [Bisello, Dario; Giubilato, Piero; Mattiazzo, Serena] Ist Nazl Fis Nucl, Sez Padova, I-35131 Padua, Italy.
RP Contarato, D (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, 1 Cyclotron Rd, Berkeley, CA 94720 USA.
OI Giubilato, Piero/0000-0003-4358-5355
NR 10
TC 3
Z9 3
U1 0
U2 7
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-9002
J9 NUCL INSTRUM METH A
JI Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc.
   Equip.
PD DEC 11
PY 2010
VL 624
IS 2
BP 425
EP 427
DI 10.1016/j.nima.2010.03.156
PG 3
WC Instruments & Instrumentation; Nuclear Science & Technology; Physics,
   Nuclear; Physics, Particles & Fields
SC Instruments & Instrumentation; Nuclear Science & Technology; Physics
GA 695LA
UT WOS:000285370400035
ER

PT J
AU Deveaux, M
   Amar-Youcef, S
   Besson, A
   Claus, G
   Colledani, C
   Dorokhov, M
   Dritsa, C
   Dulinski, W
   Frohlich, I
   Goffe, M
   Grandjean, D
   Heini, S
   Himmi, A
   Hu, C
   Jaaskelainen, K
   Muntz, C
   Shabetai, A
   Stroth, J
   Szelezniak, M
   Valin, I
   Winter, M
AF Deveaux, M.
   Amar-Youcef, S.
   Besson, A.
   Claus, G.
   Colledani, C.
   Dorokhov, M.
   Dritsa, C.
   Dulinski, W.
   Frohlich, I.
   Goffe, M.
   Grandjean, D.
   Heini, S.
   Himmi, A.
   Hu, C.
   Jaaskelainen, K.
   Muntz, C.
   Shabetai, A.
   Stroth, J.
   Szelezniak, M.
   Valin, I.
   Winter, M.
TI Radiation tolerance of CMOS monolithic active pixel sensors with
   self-biased pixels
SO NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS
   SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT
LA English
DT Article; Proceedings Paper
CT 11th European Symposium on Semiconductor Detectors
CY JUN 07-11, 2009
CL Wildbad Kreuth, GERMANY
SP PNSensor GmbH, PNDetector GmbH, XIA LLC
DE Monolithic active pixel sensor; MAPS; CMOS sensor; Radiation hardness;
   Pixel sensor
ID CHARGED-PARTICLE TRACKING
AB CMOS monolithic active pixel sensors (MAPS) are proposed as a technology for various vertex detectors in nuclear and particle physics We discuss the mechanisms of ionizing radiation damage on MAPS hosting the dead time free so-called self bias pixel Moreover we introduce radiation hardened sensor designs which allow operating detectors after exposing them to irradiation doses above 1 Mrad (C) 2010 Elsevier B V All rights reserved
C1 [Deveaux, M.; Amar-Youcef, S.; Dritsa, C.; Frohlich, I.; Muntz, C.; Stroth, J.] Goethe Univ Frankfurt, D-60439 Frankfurt, Germany.
   [Besson, A.; Claus, G.; Colledani, C.; Dorokhov, M.; Dritsa, C.; Dulinski, W.; Goffe, M.; Grandjean, D.; Heini, S.; Himmi, A.; Hu, C.; Jaaskelainen, K.; Shabetai, A.; Valin, I.; Winter, M.] IPHC, F-67037 Strasbourg 2, France.
   [Dritsa, C.; Stroth, J.] GSI Helmholtzzentrum Schwerionenforsch, D-64291 Darmstadt, Germany.
   [Szelezniak, M.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
RP Deveaux, M (reprint author), Goethe Univ Frankfurt, D-60439 Frankfurt, Germany.
NR 5
TC 6
Z9 6
U1 0
U2 3
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0168-9002
J9 NUCL INSTRUM METH A
JI Nucl. Instrum. Methods Phys. Res. Sect. A-Accel. Spectrom. Dect. Assoc.
   Equip.
PD DEC 11
PY 2010
VL 624
IS 2
BP 428
EP 431
DI 10.1016/j.nima.2010.04.045
PG 4
WC Instruments & Instrumentation; Nuclear Science & Technology; Physics,
   Nuclear; Physics, Particles & Fields
SC Instruments & Instrumentation; Nuclear Science & Technology; Physics
GA 695LA
UT WOS:000285370400036
ER

PT J
AU Geiger, S
   Cortis, A
   Birkholzer, JT
AF Geiger, S.
   Cortis, A.
   Birkholzer, J. T.
TI Upscaling solute transport in naturally fractured porous media with the
   continuous time random walk method
SO WATER RESOURCES RESEARCH
LA English
DT Article
ID RATE MASS-TRANSFER; FINITE-ELEMENT; ANOMALOUS TRANSPORT; STOCHASTIC
   TRANSPORT; NUMERICAL-SIMULATION; HETEROGENEOUS MEDIA; GEOLOGICAL MEDIA;
   TRACER TRANSPORT; MULTIPHASE FLOW; WATER INJECTION
AB Solute transport in fractured porous media is typically "non-Fickian"; that is, it is characterized by early breakthrough and long tailing and by nonlinear growth of the Green function-centered second moment. This behavior is due to the effects of (1) multirate diffusion occurring between the highly permeable fracture network and the low-permeability rock matrix, (2) a wide range of advection rates in the fractures and, possibly, the matrix as well, and (3) a range of path lengths. As a consequence, prediction of solute transport processes at the macroscale represents a formidable challenge. Classical dual-porosity (or mobile-immobile) approaches in conjunction with an advection-dispersion equation and macroscopic dispersivity commonly fail to predict breakthrough of fractured porous media accurately. It was recently demonstrated that the continuous time random walk (CTRW) method can be used as a generalized upscaling approach. Here we extend this work and use results from high-resolution finite element-finite volume-based simulations of solute transport in an outcrop analogue of a naturally fractured reservoir to calibrate the CTRW method by extracting a distribution of retention times. This procedure allows us to predict breakthrough at other model locations accurately and to gain significant insight into the nature of the fracture-matrix interaction in naturally fractured porous reservoirs with geologically realistic fracture geometries.
C1 [Geiger, S.] Heriot Watt Univ, Inst Petr Engn, Edinburgh EH14 4AS, Midlothian, Scotland.
   [Cortis, A.; Birkholzer, J. T.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Earth Sci, Berkeley, CA 94720 USA.
RP Geiger, S (reprint author), Heriot Watt Univ, Inst Petr Engn, Edinburgh EH14 4AS, Midlothian, Scotland.
EM sebastian.geiger@pet.hw.ac.uk
RI Birkholzer, Jens/C-6783-2011; Geiger, Sebastian/D-4460-2013
OI Birkholzer, Jens/0000-0002-7989-1912; Geiger,
   Sebastian/0000-0002-3792-1896
FU U.S. Department of Energy [DE-AC02-05CH11231]
FX S. Geiger thanks the Edinburgh Collaborative of Subsurface Science and
   Engineering, a joint research institute of the Edinburgh Research
   Partnership in Mathematics and Engineering, for financial support. We
   are grateful to Klaus Stuben for providing us with a free version of the
   SAMG solver and to Mandefro Belayneh for making the Bristol Channel
   fracture patterns available to us. This work was supported, in part, by
   the U.S. Department of Energy under contract DE-AC02-05CH11231. We thank
   S. Finsterle for interesting scientific discussions and constructive
   criticism. The manuscript benefitted from the constructive comments of
   three anonymous reviewer and the associate editor.
NR 71
TC 25
Z9 25
U1 0
U2 37
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0043-1397
EI 1944-7973
J9 WATER RESOUR RES
JI Water Resour. Res.
PD DEC 11
PY 2010
VL 46
AR W12530
DI 10.1029/2010WR009133
PG 13
WC Environmental Sciences; Limnology; Water Resources
SC Environmental Sciences & Ecology; Marine & Freshwater Biology; Water
   Resources
GA 693XY
UT WOS:000285259900003
ER

PT J
AU Liu, Y
   Long, C
   Peters, C
   Aleksandrov, A
AF Liu, Yun
   Long, Cary
   Peters, Charles
   Aleksandrov, Alexander
TI Measurement of ion beam profiles in a superconducting linac with a laser
   wire
SO APPLIED OPTICS
LA English
DT Article
ID H-BEAMS; BACKSCATTERING; IONIZATION
AB A laser wire ion beam profile monitor system has been developed at the Spallation Neutron Source accelerator complex. The laser wire system uses a single laser source to measure the horizontal and vertical profiles of a pulsed hydrogen ion (H-) beam along a 230 m long superconducting linac, which accelerates H- from 200 MeV to 1 GeV. In this paper, we describe the laser optics requirement for the system, the performance of the profile measurement, and the effects of laser parameters on the measurement reliability. The result provides a practical guideline for the development of a large-scale, operational, laser-based diagnostics in accelerator facilities. (C) 2010 Optical Society of America
C1 [Liu, Yun; Long, Cary; Peters, Charles; Aleksandrov, Alexander] Oak Ridge Natl Lab, Spallat Neutron Source, Oak Ridge, TN 37831 USA.
RP Liu, Y (reprint author), Oak Ridge Natl Lab, Spallat Neutron Source, Oak Ridge, TN 37831 USA.
EM liuy2@ornl.gov
FU United States Department of Energy (DOE) [DE-AC05-00OR22725]
FX The authors are grateful to members of the Beam Instrumentation Group at
   the SNS Research Accelerator Division for their discussions and
   technical support. Warren Grice is acknowledged for helping in the
   design and experiment. Oak Ridge National Laboratory is managed by UT
   Battelle, LLC, for the United States Department of Energy (DOE) under
   contract DE-AC05-00OR22725.
NR 17
TC 3
Z9 3
U1 0
U2 0
PU OPTICAL SOC AMER
PI WASHINGTON
PA 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA
SN 1559-128X
EI 2155-3165
J9 APPL OPTICS
JI Appl. Optics
PD DEC 10
PY 2010
VL 49
IS 35
BP 6816
EP 6823
DI 10.1364/AO.49.006816
PG 8
WC Optics
SC Optics
GA 692VO
UT WOS:000285184200020
PM 21151240
ER

PT J
AU Agarwal, DA
   Humphrey, M
   Beekwilder, NF
   Jackson, KR
   Goode, MM
   van Ingen, C
AF Agarwal, Deborah A.
   Humphrey, Marty
   Beekwilder, Norm F.
   Jackson, Keith R.
   Goode, Monte M.
   van Ingen, Catharine
TI A data-centered collaboration portal to support global carbon-flux
   analysis
SO CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE
LA English
DT Article; Proceedings Paper
CT Workshop on Concurrency and Computation - Practice and Experience from
   the Microsoft eScience
CY DEC 06-07, 2008
CL Indianapolis, IN
DE scientific collaboration; portal; carbon flux
ID SYSTEMS
AB Carbon-climate, like other environmental sciences, has been changing. Large-scale synthesis studies are becoming more common. These synthesis studies are often conducted by science teams that are geographically distributed and on data sets that are global in scale. A broad array of collaboration and data analytics tools are now available that could support these science teams. However, building tools that scientists actually use is difficult. Also, moving scientists from an informal collaboration structure to one mediated by technology often exposes inconsistencies in the understanding of the rules of engagement between collaborators. We have developed a scientific collaboration portal, called fluxdata.org, which serves the community of scientists providing and analyzing the global FLUXNET carbon-flux synthesis data set. The key things we learned or re-learned during our portal development include: minimize the barrier to entry, provide features on a just-in-time basis, development of requirements is an on-going process, provide incentives to change leaders and leverage the opportunity they represent, automate as much as possible, and you can only learn how to make it better if people depend on it enough to give you feedback. In addition, we also learned that splitting the portal roles between scientists and computer scientists improved user adoption and trust. The fluxdata.org portal has now been in operation for similar to 2 years and has become central to the FLUXNET synthesis efforts. Published in 2010 by John Wiley & Sons, Ltd.
C1 [Agarwal, Deborah A.; Jackson, Keith R.; Goode, Monte M.] LBNL, Adv Comp Sci, Berkeley, CA USA.
   [Humphrey, Marty; Beekwilder, Norm F.] Univ Virginia, CS, Charlottesville, VA USA.
   [van Ingen, Catharine] Microsoft Res, San Francisco, CA USA.
RP Agarwal, DA (reprint author), LBNL, Adv Comp Sci, Berkeley, CA USA.
EM daagarwal@lbl.gov
NR 20
TC 19
Z9 20
U1 1
U2 3
PU WILEY-BLACKWELL
PI MALDEN
PA COMMERCE PLACE, 350 MAIN ST, MALDEN 02148, MA USA
SN 1532-0626
J9 CONCURR COMP-PRACT E
JI Concurr. Comput.-Pract. Exp.
PD DEC 10
PY 2010
VL 22
IS 17
SI SI
BP 2323
EP 2334
DI 10.1002/cpe.1600
PG 12
WC Computer Science, Software Engineering; Computer Science, Theory &
   Methods
SC Computer Science
GA 682GF
UT WOS:000284388700004
ER

PT J
AU Williams, GJ
   Lees-Miller, SP
   Tainer, JA
AF Williams, Gareth J.
   Lees-Miller, Susan P.
   Tainer, John A.
TI Mre11-Rad50-Nbs1 conformations and the control of sensing, signaling,
   and effector responses at DNA double-strand breaks
SO DNA REPAIR
LA English
DT Review
DE Crystal structures; Allostery; ATPase; Nuclease; FHA domain; BRCT
   domains
ID MRN COMPLEX; DAMAGE RECOGNITION; REPAIR MACHINERY; SCATTERING SAXS;
   PROTEIN COMPLEX; MRE11 NUCLEASE; ATM ACTIVATION; RAD50; BINDING;
   MECHANISMS
AB Repair and integrity of DNA ends at breaks, replication forks and telomeres are essential for life; yet, paradoxically, these responses are, in many cases, controlled by a single protein complex, Mre11-Rad50-Nbs1 (MRN). The MRN complex consists of dimers of each subunit and this heterohexamer controls key sensing, signaling, regulation, and effector responses to DNA double-strand breaks including ATM activation, homologous recombinational repair, microhomology-mediated end joining and, in some organisms, non-homologous end joining. We propose that this is possible because each MRN subunit can exist in three or more distinct states; thus, the trimer of MRN dimers can exist in a stunning 63 or 216 states, a number that can be expanded further when post-translational modifications are taken into account. MRN can therefore be considered as a molecular computer that effectively assesses optimal responses and pathway choice based upon its states as set by cell status and the nature of the DNA damage. This extreme multi-state concept demands a paradigm shift from striving to understand DNA damage responses in separate terms of signaling, checkpoint, and effector proteins: we must now endeavor to characterize conformational and assembly states of MRN and other DNA repair machines that couple, coordinate, and control biological outcomes. Addressing the emerging challenge of gaining a detailed molecular understanding of MRN and other multi-state dynamic DNA repair machines promises to provide opportunities to develop master keys for controlling cell biology with probable impacts on therapeutic interventions. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Williams, Gareth J.; Tainer, John A.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Life Sci, Dept Mol Biol, Berkeley, CA 94720 USA.
   [Lees-Miller, Susan P.] Univ Calgary, Dept Biochem & Mol Biol, Calgary, AB T2N 4N1, Canada.
   [Lees-Miller, Susan P.] Univ Calgary, So Alberta Canc Res Inst, Calgary, AB T2N 4N1, Canada.
   [Tainer, John A.] Scripps Res Inst, Dept Mol Biol, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA.
RP Tainer, JA (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Life Sci, Dept Mol Biol, Berkeley, CA 94720 USA.
EM jat@scripps.edu
FU National Institutes of Health (NIH) [CA92584]
FX This work was supported by the National Institutes of Health (NIH)
   Structural Cell Biology of DNA Repair Machines P01 grant CA92584. We
   thank T. Dobbs and Kathleen Dixon for helpful discussions.
NR 66
TC 98
Z9 100
U1 1
U2 20
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1568-7864
J9 DNA REPAIR
JI DNA Repair
PD DEC 10
PY 2010
VL 9
IS 12
SI SI
BP 1299
EP 1306
DI 10.1016/j.dnarep.2010.10.001
PG 8
WC Genetics & Heredity; Toxicology
SC Genetics & Heredity; Toxicology
GA 699IK
UT WOS:000285656900011
PM 21035407
ER

PT J
AU Dobbs, TA
   Tainer, JA
   Lees-Miller, SP
AF Dobbs, Tracey A.
   Tainer, John A.
   Lees-Miller, Susan P.
TI A structural model for regulation of NHEJ by DNA-PKcs
   autophosphorylation
SO DNA REPAIR
LA English
DT Review
DE DNA-PKcs; Non-homologous end joining; DNA double strand break repair;
   SAXS; Phosphorylation
ID DEPENDENT PROTEIN-KINASE; DOUBLE-STRAND BREAKS; WERNER-SYNDROME PROTEIN;
   LIGASE-IV COMPLEX; CATALYTIC SUBUNIT; PHOSPHORYLATION SITES; IN-VIVO;
   3-DIMENSIONAL STRUCTURE; V(D)J RECOMBINATION; MAMMALIAN-CELLS
AB The DNA-dependent protein kinase catalytic subunit (DNA-PKcs) and Ku heterodimer together form the biologically critical DNA-PK complex that plays key roles in the repair of ionizing radiation-induced DNA double-strand breaks through the non-homologous end-joining (NHEJ) pathway. Despite elegant and informative electron microscopy studies, the mechanism by which DNA-PK co-ordinates the initiation of NHEJ has been enigmatic due to limited structural information. Here, we discuss how the recently described small angle X-ray scattering structures of full-length Ku heterodimer and DNA-PKcs in solution, combined with a breakthrough DNA-PKcs crystal structure, provide significant insights into the early stages of NHEJ. Dynamic structural changes associated with a functionally important cluster of autophosphorylation sites play a significant role in regulating the dissociation of DNA-PKcs from Ku and DNA. These new structural insights have implications for understanding the formation and control of the DNA-PK synaptic complex, DNA-PKcs activation and initiation of NHEJ. More generally, they provide prototypic information for the phosphatidylinositol-3 kinase-like (PIKK) family of serine/threonine protein kinases that includes Ataxia Telangiectasia-Mutated (ATM) and ATM-, Rad3-related (ATR) as well as DNA-PKcs. (C) 2010 Elsevier E.V. All rights reserved.
C1 [Dobbs, Tracey A.; Lees-Miller, Susan P.] Univ Calgary, So Alberta Canc Res Inst, Dept Biochem & Mol Biol, Calgary, AB T2N 4Z6, Canada.
   [Dobbs, Tracey A.; Lees-Miller, Susan P.] Univ Calgary, So Alberta Canc Res Inst, Dept Oncol, Calgary, AB T2N 4Z6, Canada.
   [Tainer, John A.] Scripps Res Inst, Dept Mol Biol, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA.
   [Tainer, John A.] Univ Calif Berkeley, Lawrence Berkeley Lab, Dept Mol Biol, Div Life Sci, Berkeley, CA 94720 USA.
RP Lees-Miller, SP (reprint author), Univ Calgary, So Alberta Canc Res Inst, Dept Biochem & Mol Biol, 3280 Hosp Dr NW, Calgary, AB T2N 4Z6, Canada.
EM leesmill@ucalgary.ca
FU Alberta Innovates-Health Solutions; Canadian Institutes for Health
   Research; National Cancer Institute Structural Cell Biology of DNA
   Repair Machines [CA92584]
FX We thank Michal Hammel for help with SAXS analyses and figures and
   Alberta Innovates-Health Solutions, the Canadian Institutes for Health
   Research and National Cancer Institute Structural Cell Biology of DNA
   Repair Machines grant CA92584 for support.
NR 114
TC 99
Z9 107
U1 0
U2 12
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 1568-7864
EI 1568-7856
J9 DNA REPAIR
JI DNA Repair
PD DEC 10
PY 2010
VL 9
IS 12
SI SI
BP 1307
EP 1314
DI 10.1016/j.dnarep.2010.09.019
PG 8
WC Genetics & Heredity; Toxicology
SC Genetics & Heredity; Toxicology
GA 699IK
UT WOS:000285656900012
PM 21030321
ER

PT J
AU Safta, C
   Ray, J
   Najm, HN
AF Safta, Cosmin
   Ray, Jaideep
   Najm, Habib N.
TI A high-order low-Mach number AMR construction for chemically reacting
   flows
SO JOURNAL OF COMPUTATIONAL PHYSICS
LA English
DT Article
DE Low-Mach number; Pressure projection; Adaptive mesh refinement;
   High-order stencils; Operator-split
ID ADAPTIVE PROJECTION METHOD; NAVIER-STOKES EQUATIONS;
   NUMERICAL-SIMULATION; MESH REFINEMENT; FLAME; COMBUSTION; CHEMISTRY;
   DYNAMICS
AB A high-order projection scheme was developed for the study of chemically reacting flows in the low-Mach number limit. The numerical approach for the momentum transport uses a combination of cell-centered/cell-averaged discretizations to achieve a fourth order formulation for the pressure projection algorithm. This scheme is coupled with a second order in time operator-split stiff approach for the species and energy equations. The code employs a fourth order, block-structured, adaptive mesh refinement approach to address the challenges posed by the large spectrum of spatial scales encountered in reacting flow computations. Results for advection-diffusion-reaction configurations are used to illustrate the performance of the numerical construction. (C) 2010 Elsevier Inc. All rights reserved.
C1 [Safta, Cosmin; Ray, Jaideep; Najm, Habib N.] Sandia Natl Labs, Livermore, CA 94550 USA.
RP Safta, C (reprint author), Sandia Natl Labs, Livermore, CA 94550 USA.
EM csafta@sandia.gov
FU US Department of Energy (DOE), Office of Basic Energy Sciences (BES);
   United States Department of Energy [DE-AC04-94-AL85000]; Office of
   Science of the U.S. Department of Energy [DE-AC02-05CH11231]
FX This work was supported by the US Department of Energy (DOE), Office of
   Basic Energy Sciences (BES), SciDAC Computational Chemistry program.
   Sandia National Laboratories is a multiprogram laboratory operated by
   Sandia Corporation, a Lockheed Martin Company, for the United States
   Department of Energy under Contract DE-AC04-94-AL85000. This research
   used resources of the National Energy Research Scientific Computing
   Center, which is supported by the Office of Science of the U.S.
   Department of Energy under Contract No. DE-AC02-05CH11231.
NR 33
TC 12
Z9 12
U1 0
U2 2
PU ACADEMIC PRESS INC ELSEVIER SCIENCE
PI SAN DIEGO
PA 525 B ST, STE 1900, SAN DIEGO, CA 92101-4495 USA
SN 0021-9991
J9 J COMPUT PHYS
JI J. Comput. Phys.
PD DEC 10
PY 2010
VL 229
IS 24
BP 9299
EP 9322
DI 10.1016/j.jcp.2010.09.002
PG 24
WC Computer Science, Interdisciplinary Applications; Physics, Mathematical
SC Computer Science; Physics
GA 676HN
UT WOS:000283901700019
ER

PT J
AU Denton, RE
   Engebretson, MJ
   Keiling, A
   Walsh, AP
   Gary, SP
   Decreau, PME
   Cattell, CA
   Reme, H
AF Denton, R. E.
   Engebretson, M. J.
   Keiling, A.
   Walsh, A. P.
   Gary, S. P.
   Decreau, P. M. E.
   Cattell, C. A.
   Reme, H.
TI Multiple harmonic ULF waves in the plasma sheet boundary layer:
   Instability analysis
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID ION SHELL DISTRIBUTIONS; CYCLOTRON WAVES; MAGNETOSPHERE; ELECTRON;
   PROTON; POLARIZATION; SIMULATIONS; MAGNETOTAIL; GENERATION; FLOWS
AB Multiple-harmonic electromagnetic waves in the ULF band have occasionally been observed in Earth's magnetosphere, both near the magnetic equator in the outer plasmasphere and in the plasma sheet boundary layer (PSBL) in Earth's magnetotail. Observations by the Cluster spacecraft of multiple-harmonic electromagnetic waves with fundamental frequency near the local proton cyclotron frequency, Omega(cp), were recently reported in the plasma sheet boundary layer by Broughton et al. (2008). A companion paper surveys the entire magnetotail passage of Cluster during 2003, and reports 35 such events, all in the PSBL, and all associated with elevated fluxes of counterstreaming ions and electrons. In this study we use observed pitch angle distributions of ions and electrons during a wave event observed by Cluster on 9 September 2003 to perform an instability analysis. We use a semiautomatic procedure for developing model distributions composed of bi-Maxwellian components that minimizes the difference between modeled and observed distribution functions. Analysis of wave instability using the WHAMP electromagnetic plasma wave dispersion code and these model distributions reveals an instability near Omega(cp) and its harmonics. The observed and model ion distributions exhibit both beam-like and ring-like features which might lead to instability. Further instability analysis with simple beam-like and ring-like model distribution functions indicates that the instability is due to the ring-like feature. Our analysis indicates that this instability persists over an enormous range in the effective ion beta (based on a best fit for the observed distribution function using a single Maxwellian distribution), beta', but that the character of the instability changes with beta'. For beta' of order unity (for instance, the observed case with beta' similar to 0.4), the instability is predominantly electromagnetic; the fluctuating magnetic field has components in both the perpendicular and parallel directions, but the perpendicular fluctuations are larger. If beta' is greatly decreased to about 5 x 10(-4) (by increasing the magnetic field), the instability becomes electrostatic. On the other hand, if beta' is increased (by decreasing the magnetic field), the instability remains electromagnetic, but becomes predominantly compressional (magnetic fluctuations predominantly parallel) at beta' similar to 2. The beta' dependence we observe here may connect various waves at harmonics of the proton gyrofrequency found in different regions of space.
C1 [Denton, R. E.] Dartmouth Coll, Dept Phys & Astron, Hanover, NH 03755 USA.
   [Engebretson, M. J.] Augsburg Coll, Dept Phys, Minneapolis, MN 55454 USA.
   [Keiling, A.] Univ Calif Berkeley, Space Sci Lab, Berkeley, CA 94720 USA.
   [Walsh, A. P.] Univ Coll London, Mullard Space Sci Lab, Dorking RH5 6NT, Surrey, England.
   [Gary, S. P.] Los Alamos Natl Lab, Grp ISR 1, Los Alamos, NM 87545 USA.
   [Decreau, P. M. E.] CNRS, LPC2E, UMR 6115, F-45071 Orleans 2, France.
   [Cattell, C. A.] Univ Minnesota, Sch Phys & Astron, Minneapolis, MN 55455 USA.
   [Reme, H.] Univ Toulouse, CESR, UPS, F-31028 Toulouse, France.
   [Reme, H.] CNRS, UMR 5187, Toulouse, France.
RP Denton, RE (reprint author), Dartmouth Coll, Dept Phys & Astron, Hanover, NH 03755 USA.
EM richard.e.denton@dartmouth.edu; engebret@augsburg.edu;
   keiling@ssl.berkeley.edu; apw@mssl.ucl.ac.uk; pgary@lanl.gov;
   pierrette.decreau@cnrs-orleans.fr; cattell@fields.space.umn.edu;
   reme@cesr.fr
RI Walsh, Andrew/E-6701-2011
FU NSF [ANT-0538379, ATM-0120950, ATM-0827903]; NASA [NNX08AF29G,
   NNG04GG83G, NNX08AF28G]; UK STFC [PP/E/001173/1]; U.S. Department of
   Energy; Defense Threat Reduction Agency [IACRO 10-4946I]; CNES
FX We thank Barrett Rogers of Dartmouth College for helpful conversations,
   and Karl-Heinz Fornacon of the Technical University of Braunschweig for
   assistance in obtaining the Cluster FGM data. Work at Dartmouth College
   was supported by NSF grants ANT-0538379 and ATM-0120950 (Center for
   Integrated Space Weather Modeling, CISM, funded by the NSF Science and
   Technology Centers Program). Work at Augsburg College was supported by
   NSF grants ATM-0827903 and ANT-0538379. Work at the University of
   California, Berkeley, was supported by NASA grant NNX08AF29G. Work at
   UCL-MSSL was supported by UK STFC Rolling grant PP/E/001173/1. The Los
   Alamos portion of this work was performed under the auspices of the U.S.
   Department of Energy, and was supported by the Defense Threat Reduction
   Agency under their "Basic Research for Combating Weapons of Mass
   Destruction" Program, IACRO 10-4946I. Work at the University of
   Minnesota was supported by NASA grants NNG04GG83G and NNX08AF28G.
   Cluster work at LPC2E and CESR was funded by CNES grants.
NR 35
TC 21
Z9 21
U1 0
U2 5
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-9380
EI 2169-9402
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 10
PY 2010
VL 115
AR A12224
DI 10.1029/2010JA015928
PG 13
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 693WQ
UT WOS:000285256500005
ER

PT J
AU Bertin, A
   McMurray, MA
   Thai, L
   Garcia, G
   Votin, V
   Grob, P
   Allyn, T
   Thorner, J
   Nogales, E
AF Bertin, Aurelie
   McMurray, Michael A.
   Thai, Luong
   Garcia, Galo, III
   Votin, Violet
   Grob, Patricia
   Allyn, Theresa
   Thorner, Jeremy
   Nogales, Eva
TI Phosphatidylinositol-4,5-bisphosphate Promotes Budding Yeast Septin
   Filament Assembly and Organization
SO JOURNAL OF MOLECULAR BIOLOGY
LA English
DT Article
DE septins; phosphoinositides; yeast; lipid monolayers; mutations
ID SACCHAROMYCES-CEREVISIAE; PLASMA-MEMBRANE; MAMMALIAN SEPTINS;
   CONFORMATIONAL-CHANGES; ELECTRON-MICROSCOPY; ACTIN CYTOSKELETON;
   GTP-BINDING; 4,5-BISPHOSPHATE; POLYMERIZATION; LOCALIZATION
AB Septins are a conserved family of GTP-binding proteins that assemble into symmetric linear heterooligomeric complexes, which in turn are able to polymerize into apolar filaments and higher-order structures. In budding yeast (Saccharomyces cerevisiae) and other eukaryotes, proper septin organization is essential for processes that involve membrane remodeling, such as the execution of cytokinesis. In yeast, four septin subunits form a Cdc11-Cdc12-Cdc3-Cdc10-Cdc10-Cdc3-Cdc12-Cdc11 heterooctameric rod that polymerizes into filaments thought to form a collar around the bud neck in close contact with the inner surface of the plasma membrane. To explore septin membrane interactions, we examined the effect of lipid monolayers on septin organization at the ultrastructural level using electron microscopy. Using this methodology, we have acquired new insights into the potential effect of septin membrane interactions on filament assembly and, more specifically, on the role of phosphoinositides. Our studies demonstrate that budding yeast septins interact specifically with phosphatidylinositol-4,5-bisphosphate (PIP2) and indicate that the N terminus of Cdc10 makes a major contribution to the interaction of septin filaments with PIP2. Furthermore, we found that the presence of PIP2 promotes filament polymerization and organization on monolayers, even under conditions that prevent filament formation in solution or for mutants that prevent filament formation in solution. In the extreme case of septin complexes lacking the normally terminal subunit Cdc11 or the normally central Cdc10 doublet, the combination of the PIP2-containing monolayer and nucleotide permitted filament formation in vitro via atypical Cdc12-Cdc12 and Cdc3-Cdc3 interactions, respectively. (C) 2010 Elsevier Ltd. All rights reserved.
C1 [Bertin, Aurelie; McMurray, Michael A.; Thai, Luong; Garcia, Galo, III; Votin, Violet; Allyn, Theresa; Thorner, Jeremy; Nogales, Eva] Univ Calif Berkeley, Dept Mol & Cell Biol, Div Biochem & Mol Biol, Berkeley, CA 94720 USA.
   [Nogales, Eva] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Life Sci, Berkeley, CA 94720 USA.
   [Grob, Patricia; Nogales, Eva] Howard Hughes Med Inst, Chevy Chase, MD 20815 USA.
RP Nogales, E (reprint author), Univ Calif Berkeley, Dept Mol & Cell Biol, Div Biochem & Mol Biol, 708C Stanley Hall, Berkeley, CA 94720 USA.
EM enogales@lbl.gov
FU Jane Coffin Childs Postdoctoral Research Fellowship [61-1357]; National
   Institutes of Health [K99, GM86603, R01, GM21841]; National Science
   Foundation; Howard Hughes Medical Institute
FX We thank Ho-Leung Ng and Tom Alber for the gift of plasmids expressing
   MBP-Cdc12(Delta 318-407)-Cdc10-Cdc11-(His)<INF>6</INF>-Cdc3 and
   Cdc12(Delta 318-407)-Cdc10-Cdc11-(His)<INF>6</INF>-Cdc3(Delta 419-520)
   septin complexes. This work was supported by Jane Coffin Childs
   Postdoctoral Research Fellowship 61-1357 (to A.B.), National Institutes
   of Health K99 grant GM86603 (to M.A.M.), a National Science Foundation
   Predoctoral Fellowship (to G.G.), the Howard Hughes Medical Institute
   (to E.N.), and National Institutes of Health R01 grant GM21841 (to
   J.T.).
NR 54
TC 79
Z9 81
U1 3
U2 14
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0022-2836
J9 J MOL BIOL
JI J. Mol. Biol.
PD DEC 10
PY 2010
VL 404
IS 4
BP 711
EP 731
DI 10.1016/j.jmb.2010.10.002
PG 21
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 703YN
UT WOS:000286018000013
PM 20951708
ER

PT J
AU Ben-Naim, E
   Krapivsky, PL
AF Ben-Naim, E.
   Krapivsky, P. L.
TI Kinetics of first passage in a cone
SO JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL
LA English
DT Article
ID BROWNIAN-MOTION; POTENTIAL-THEORY; CONICAL DOMAINS; RANDOM-WALKS; EXIT
   TIMES; WALLS
AB We study statistics of first passage inside a cone in an arbitrary spatial dimension. The probability that a diffusing particle avoids the cone boundary decays algebraically with time. The decay exponent depends on two variables: the opening angle of the cone and the spatial dimension. In four dimensions, we find an explicit expression for the exponent, and in general, we obtain it as a root of a transcendental equation involving associated Legendre functions. At large dimensions, the decay exponent depends on a single scaling variable, while roots of the parabolic cylinder function specify the scaling function. Consequently, the exponent is of order one only if the cone surface is very close to a plane. We also perform asymptotic analysis for extremely thin and extremely wide cones.
C1 [Ben-Naim, E.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
   [Ben-Naim, E.] Los Alamos Natl Lab, Ctr Nonlinear Studies, Los Alamos, NM 87545 USA.
   [Krapivsky, P. L.] Boston Univ, Dept Phys, Boston, MA 02215 USA.
RP Ben-Naim, E (reprint author), Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
EM ebn@lanl.gov
RI Ben-Naim, Eli/C-7542-2009; Krapivsky, Pavel/A-4612-2014
OI Ben-Naim, Eli/0000-0002-2444-7304; 
FU DOE [DE-AC52-06NA25396]; NSF [CCF-0829541]
FX We thank Sidney Redner for useful discussions. This research has been
   supported by DOE grant DE-AC52-06NA25396 and NSF grant CCF-0829541.
NR 45
TC 14
Z9 14
U1 0
U2 2
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 1751-8113
J9 J PHYS A-MATH THEOR
JI J. Phys. A-Math. Theor.
PD DEC 10
PY 2010
VL 43
IS 49
AR 495007
DI 10.1088/1751-8113/43/49/495007
PG 14
WC Physics, Multidisciplinary; Physics, Mathematical
SC Physics
GA 684FS
UT WOS:000284536400009
ER

PT J
AU Ben-Naim, E
   Krapivsky, PL
AF Ben-Naim, E.
   Krapivsky, P. L.
TI First-passage exponents of multiple random walks
SO JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL
LA English
DT Article
ID BROWNIAN-MOTION; POTENTIAL-THEORY; CONICAL DOMAINS; EXIT TIMES;
   DIFFUSION; PARTICLES; CHAINS; CONES
AB We investigate first-passage statistics of an ensemble of N noninteracting random walks on a line. Starting from a configuration in which all particles are located in the positive half-line, we study S-n(t), the probability that the nth rightmost particle remains in the positive half-line up to time t. This quantity decays algebraically, S-n(t) similar to t(-beta n), in the long-time limit. Interestingly, there is a family of nontrivial first-passage exponents, beta(1) < beta(2) < ... < beta(N-1); the only exception is the two-particle case where beta(1) = 1/3. In the N -> infinity limit, however, the exponents attain a scaling form, beta(n)(N) -> beta(z) with z = (n - N/2)/root N. We also demonstrate that the smallest exponent decays exponentially with N. We deduce these results from first-passage kinetics of a random walk in an N-dimensional cone and confirm them using numerical simulations. Additionally, we investigate the family of exponents that characterizes leadership statistics of multiple random walks and find that in this case, the cone provides an excellent approximation.
C1 [Ben-Naim, E.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
   [Ben-Naim, E.] Los Alamos Natl Lab, Ctr Nonlinear Studies, Los Alamos, NM 87545 USA.
   [Krapivsky, P. L.] Boston Univ, Dept Phys, Boston, MA 02215 USA.
RP Ben-Naim, E (reprint author), Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
EM ebn@lanl.gov
RI Ben-Naim, Eli/C-7542-2009; Krapivsky, Pavel/A-4612-2014
OI Ben-Naim, Eli/0000-0002-2444-7304; 
FU DOE [DE-AC52-06NA25396]; NSF [CCF-0829541]
FX This research has been supported by DOE grant DE-AC52-06NA25396 and NSF
   grant CCF-0829541.
NR 46
TC 15
Z9 16
U1 0
U2 2
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 1751-8113
J9 J PHYS A-MATH THEOR
JI J. Phys. A-Math. Theor.
PD DEC 10
PY 2010
VL 43
IS 49
AR 495008
DI 10.1088/1751-8113/43/49/495008
PG 16
WC Physics, Multidisciplinary; Physics, Mathematical
SC Physics
GA 684FS
UT WOS:000284536400010
ER

PT J
AU Al-Mahboob, A
   Fujikawa, Y
   Sadowski, JT
   Hashizume, T
   Sakurai, T
AF Al-Mahboob, A.
   Fujikawa, Y.
   Sadowski, J. T.
   Hashizume, T.
   Sakurai, T.
TI Formation of giant crystalline grain via delayed growth process driven
   by organic molecular anisotropy
SO PHYSICAL REVIEW B
LA English
DT Article
ID THIN-FILM TRANSISTORS; PENTACENE; NUCLEATION; DENSITIES; MOBILITY
AB The growth of (001)-oriented pentacene (C(22)H(14), Pn)thin films on silicon surfaces has been extensively studied to elucidate the role of molecular anisotropy in nucleation and island evolution in organic film growth. In situ real-time low-energy electron microscopy studies of growth of Pn revealed a delayed, low-density nucleation that could be related to the difference in the orientation of this anisotropic molecule in its diffusing state and in the crystalline film. In contrast to the growth of Pn on self-assembled monolayers or SiO(2), we observed a delayed nucleation and formation of extraordinarily large grains (in submillimeter scale)on semiconducting alpha root 3-Bi-Si(111)and on semimetallic Bi(0001)/Si(111)with a continuation in film growth after stopping Pn deposition. The delayed and very low-density nucleation and continuing growth after stopping deposition could be explained by a incorporation-limited growth processes resulted from a large energy barrier for Pn nucleation in standing-up orientation, as the molecule needs to reorient itself from a lying-down, diffusing state in order to build into the crystalline film.
C1 [Fujikawa, Y.] Tohoku Univ, Inst Mat Res, Aoba Ku, Sendai, Miyagi 9808577, Japan.
   [Al-Mahboob, A.; Hashizume, T.; Sakurai, T.] Tohoku Univ, WPI Adv Inst Mat Res, Aoba Ku, Sendai, Miyagi 9808577, Japan.
   [Sadowski, J. T.] Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA.
   [Hashizume, T.] Hitachi Ltd, Adv Res Lab, Hatoyama, Saitama 3500395, Japan.
   [Hashizume, T.] Tokyo Inst Technol, Dept Phys, Meguro Ku, Tokyo 1528551, Japan.
RP Fujikawa, Y (reprint author), Tohoku Univ, Inst Mat Res, Aoba Ku, 2-1-1 Katahira, Sendai, Miyagi 9808577, Japan.
EM fujika-0@imr.tohoku.ac.jp
RI Fujikawa, Yasunori/A-6527-2009; Al-Mahboob, Abdullah/B-9529-2011; 
OI Sadowski, Jerzy/0000-0002-4365-7796
FU Japan Society for the Promotion of Science
FX The work by Y.F. and A. A. M were supported, respectively, by a
   Grant-in-Aid for Scientific Research and a Grant-in-Aid for Young
   Scientists from Japan Society for the Promotion of Science.
NR 30
TC 10
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U1 0
U2 9
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 10
PY 2010
VL 82
IS 23
AR 235421
DI 10.1103/PhysRevB.82.235421
PG 6
WC Physics, Condensed Matter
SC Physics
GA 713WR
UT WOS:000286768600012
ER

PT J
AU Belianinov, A
   Unal, B
   Lu, N
   Ji, M
   Ho, KM
   Wang, CZ
   Tringides, MC
   Thiel, PA
AF Belianinov, Alex
   Uenal, Baris
   Lu, Ning
   Ji, Min
   Ho, K. -M.
   Wang, C. -Z.
   Tringides, M. C.
   Thiel, P. A.
TI Islands and holes as measures of mass balance in growth of the (root 3x
   root 3)R30 degrees phase of Ag on Si(111)
SO PHYSICAL REVIEW B
LA English
DT Article
ID SCANNING-TUNNELING-MICROSCOPY; 2-DIMENSIONAL ADATOM GAS;
   ELECTRICAL-CONDUCTION; RESTRUCTURING PROCESS; X ROOT-3; SURFACE;
   AG/SI(111); DEPOSITION; AU; RECONSTRUCTIONS
AB It is well known that conversion of Si(111)-(7x7) into the (root 3x root 3)R30 degrees phase of adsorbed Ag requires a change in the Si density, and causes formation of islands and holes at the surface. By mass balance, the ratio of areas of islands and holes (R-IH) should be approximately 1. However, we find that the ratio is significantly higher, depending on preparation conditions. A possible explanation would be that there are different types of (root 3x root 3)R30 degrees structures. However, neither scanning tunneling microscopy nor density-functional theory (implemented as a genetic algorithm search) supports this explanation. We propose that the edges of the islands contain excess Ag which becomes available to expand the holes, when the island perimeter decreases. Under certain conditions, excess Ag is also made available by dissolution of small islands that are Ag rich.
C1 [Belianinov, Alex; Uenal, Baris; Lu, Ning; Ji, Min; Ho, K. -M.; Wang, C. -Z.; Tringides, M. C.; Thiel, P. A.] Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
   [Belianinov, Alex; Thiel, P. A.] Iowa State Univ, Dept Chem, Ames, IA 50011 USA.
   [Uenal, Baris; Thiel, P. A.] Iowa State Univ, Dept Mat Sci & Engn, Ames, IA 50011 USA.
   [Lu, Ning; Ji, Min; Ho, K. -M.; Wang, C. -Z.; Tringides, M. C.] Iowa State Univ, Dept Phys & Astron, Ames, IA 50011 USA.
RP Belianinov, A (reprint author), Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
RI Ji, Min/F-3503-2011; lu, ning/H-1993-2011; 
OI Belianinov, Alex/0000-0002-3975-4112
FU U.S. Department of Energy, Office of Basic Energy Science, Division of
   Materials Sciences and Engineering; Iowa State University
   [DE-AC02-07CH11358]
FX This work was supported by the U.S. Department of Energy, Office of
   Basic Energy Science, Division of Materials Sciences and Engineering.
   The research was performed at the Ames Laboratory. Ames Laboratory is
   operated for the U.S. Department of Energy by Iowa State University
   under Contract No. DE-AC02-07CH11358.
NR 39
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U1 0
U2 10
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
EI 1550-235X
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 10
PY 2010
VL 82
IS 24
AR 245413
DI 10.1103/PhysRevB.82.245413
PG 7
WC Physics, Condensed Matter
SC Physics
GA 715PI
UT WOS:000286896000002
ER

PT J
AU Kim, MG
   Kreyssig, A
   Thaler, A
   Pratt, DK
   Tian, W
   Zarestky, JL
   Green, MA
   Bud'ko, SL
   Canfield, PC
   McQueeney, RJ
   Goldman, AI
AF Kim, M. G.
   Kreyssig, A.
   Thaler, A.
   Pratt, D. K.
   Tian, W.
   Zarestky, J. L.
   Green, M. A.
   Bud'ko, S. L.
   Canfield, P. C.
   McQueeney, R. J.
   Goldman, A. I.
TI Antiferromagnetic ordering in the absence of structural distortion in
   Ba(Fe1-xMnx)(2)As-2
SO PHYSICAL REVIEW B
LA English
DT Article
AB Neutron and x-ray diffraction studies of Ba(Fe1-xMnx)(2)As-2 for low doping concentrations (x <= 0.176) reveal that at a critical concentration, 0.102 < x < 0.118, the tetragonal-to-orthorhombic transition abruptly disappears whereas magnetic ordering with a propagation vector of (1/2 1/2 1 ) persists. Among all of the iron arsenides this observation is unique to Mn doping, and unexpected because all models for "stripelike" antiferromagnetic order anticipate an attendant orthorhombic distortion due to magnetoelastic effects. We discuss these observations and their consequences in terms of previous studies of Ba(Fe1-xTMx)(2)As-2 compounds (TM = transition metal ), and models for magnetic ordering in the iron arsenide compounds.
C1 [Kim, M. G.; Kreyssig, A.; Thaler, A.; Pratt, D. K.; Tian, W.; Zarestky, J. L.; Bud'ko, S. L.; Canfield, P. C.; McQueeney, R. J.; Goldman, A. I.] Iowa State Univ, Ames Lab, US DOE, Ames, IA 50011 USA.
   [Kim, M. G.; Kreyssig, A.; Thaler, A.; Pratt, D. K.; Tian, W.; Zarestky, J. L.; Bud'ko, S. L.; Canfield, P. C.; McQueeney, R. J.; Goldman, A. I.] Iowa State Univ, Dept Phys & Astron, Ames, IA 50011 USA.
   [Green, M. A.] Natl Inst Stand & Technol, NIST Ctr Neutron Res, Gaithersburg, MD 20899 USA.
   [Green, M. A.] Univ Maryland, Dept Mat Sci & Engn, College Pk, MD 20742 USA.
RP Kim, MG (reprint author), Iowa State Univ, Ames Lab, US DOE, Ames, IA 50011 USA.
RI Kim, Min Gyu/B-8637-2012; Tian, Wei/C-8604-2013; Canfield,
   Paul/H-2698-2014; Thaler, Alexander/J-5741-2014; McQueeney,
   Robert/A-2864-2016
OI Kim, Min Gyu/0000-0001-7676-454X; Tian, Wei/0000-0001-7735-3187; Thaler,
   Alexander/0000-0001-5066-8904; McQueeney, Robert/0000-0003-0718-5602
FU Division of Materials Sciences and Engineering, Office of Basic Energy
   Sciences, U.S. Department of Energy; U.S. Department of Energy
   [DE-AC02-07CH11358, DE-AC05-00OR22725]; Scientific User Facilities
   Division, Office of Basic Energy Sciences, U.S. Department of Energy
   (U.S. DOE)
FX We acknowledge valuable discussions with J. Schmalian and R. M.
   Fernandes. This work was supported by the Division of Materials Sciences
   and Engineering, Office of Basic Energy Sciences, U.S. Department of
   Energy. Ames Laboratory is operated for the U.S. Department of Energy by
   Iowa State University under Contract No. DE-AC02-07CH11358. The work at
   the High Flux Isotope Reactor, Oak Ridge National Laboratory (ORNL), was
   sponsored by the Scientific User Facilities Division, Office of Basic
   Energy Sciences, U.S. Department of Energy (U.S. DOE). ORNL is operated
   by UT-Battelle, LLC for the U.S. DOE under Contract No.
   DE-AC05-00OR22725.
NR 29
TC 56
Z9 56
U1 1
U2 12
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 10
PY 2010
VL 82
IS 22
AR 220503
DI 10.1103/PhysRevB.82.220503
PG 4
WC Physics, Condensed Matter
SC Physics
GA 713SU
UT WOS:000286758500001
ER

PT J
AU Aaltonen, T
   Gonzalez, BA
   Amerio, S
   Amidei, D
   Anastassov, A
   Annovi, A
   Antos, J
   Albrow, MG
   Apollinari, G
   Appel, JA
   Apresyan, A
   Arisawa, T
   Artikov, A
   Asaadi, J
   Ashmanskas, W
   Auerbach, B
   Aurisano, A
   Azfar, F
   Badgett, W
   Barbaro-Galtieri, A
   Barnes, VE
   Barnett, BA
   Barria, P
   Bartos, P
   Bauce, M
   Bauer, G
   Bedeschi, F
   Beecher, D
   Behari, S
   Bellettini, G
   Bellinger, J
   Benjamin, D
   Beretvas, A
   Bhatti, A
   Binkley, M
   Bisello, D
   Bizjak, I
   Bland, KR
   Blocker, C
   Blumenfeld, B
   Bocci, A
   Bodek, A
   Bortoletto, D
   Boudreau, J
   Boveia, A
   Brau, B
   Brigliadori, L
   Brisuda, A
   Bromberg, C
   Brucken, E
   Bucciantonio, M
   Budagov, J
   Budd, HS
   Budd, S
   Burkett, K
   Busetto, G
   Bussey, P
   Buzatu, A
   Cabrera, S
   Calancha, C
   Camarda, S
   Campanelli, M
   Campbell, M
   Canelli, F
   Canepa, A
   Carls, B
   Carlsmith, D
   Carosi, R
   Carrillo, S
   Carron, S
   Casal, B
   Casarsa, M
   Castro, A
   Catastini, P
   Cauz, D
   Cavaliere, V
   Cavalli-Sforza, M
   Cerri, A
   Cerrito, L
   Chen, YC
   Chertok, M
   Chiarelli, G
   Chlachidze, G
   Chlebana, F
   Cho, K
   Chokheli, D
   Chou, JP
   Chung, WH
   Chung, YS
   Ciobanu, CI
   Ciocci, MA
   Clark, A
   Clark, D
   Compostella, G
   Convery, ME
   Conway, J
   Corbo, M
   Cordelli, M
   Cox, CA
   Cox, DJ
   Crescioli, F
   Almenar, CC
   Cuevas, J
   Culbertson, R
   Dagenhart, D
   d'Ascenzo, N
   Datta, M
   de Barbaro, P
   De Cecco, S
   De Lorenzo, G
   Dell'Orso, M
   Deluca, C
   Demortier, L
   Deng, J
   Deninno, M
   Devoto, F
   d'Errico, M
   Di Canto, A
   Di Ruzza, B
   Dittmann, JR
   D'Onofrio, M
   Donati, S
   Dong, P
   Dorigo, T
   Ebina, K
   Elagin, A
   Eppig, A
   Erbacher, R
   Errede, D
   Errede, S
   Ershaidat, N
   Eusebi, R
   Fang, HC
   Farrington, S
   Feindt, M
   Fernandez, JP
   Ferrazza, C
   Field, R
   Flanagan, G
   Forrest, R
   Frank, MJ
   Franklin, M
   Freeman, JC
   Furic, I
   Gallinaro, M
   Galyardt, J
   Garcia, JE
   Garfinkel, AF
   Garosi, P
   Gerberich, H
   Gerchtein, E
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   Giakoumopoulou, V
   Giannetti, P
   Gibson, K
   Ginsburg, CM
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   Giromini, P
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   Giurgiu, G
   Glagolev, V
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   Gomez-Ceballos, G
   Goncharov, M
   Gonzalez, O
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AF Aaltonen, T.
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   Anastassov, A.
   Annovi, A.
   Antos, J.
   Albrow, M. G.
   Apollinari, G.
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   Apresyan, A.
   Arisawa, T.
   Artikov, A.
   Asaadi, J.
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   Auerbach, B.
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   Azfar, F.
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   Barnett, B. A.
   Barria, P.
   Bartos, P.
   Bauce, M.
   Bauer, G.
   Bedeschi, F.
   Beecher, D.
   Behari, S.
   Bellettini, G.
   Bellinger, J.
   Benjamin, D.
   Beretvas, A.
   Bhatti, A.
   Binkley, M.
   Bisello, D.
   Bizjak, I.
   Bland, K. R.
   Blocker, C.
   Blumenfeld, B.
   Bocci, A.
   Bodek, A.
   Bortoletto, D.
   Boudreau, J.
   Boveia, A.
   Brau, B.
   Brigliadori, L.
   Brisuda, A.
   Bromberg, C.
   Brucken, E.
   Bucciantonio, M.
   Budagov, J.
   Budd, H. S.
   Budd, S.
   Burkett, K.
   Busetto, G.
   Bussey, P.
   Buzatu, A.
   Cabrera, S.
   Calancha, C.
   Camarda, S.
   Campanelli, M.
   Campbell, M.
   Canelli, F.
   Canepa, A.
   Carls, B.
   Carlsmith, D.
   Carosi, R.
   Carrillo, S.
   Carron, S.
   Casal, B.
   Casarsa, M.
   Castro, A.
   Catastini, P.
   Cauz, D.
   Cavaliere, V.
   Cavalli-Sforza, M.
   Cerri, A.
   Cerrito, L.
   Chen, Y. C.
   Chertok, M.
   Chiarelli, G.
   Chlachidze, G.
   Chlebana, F.
   Cho, K.
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CA CDF Collaboration
TI Diffractive W and Z production at the Fermilab Tevatron
SO PHYSICAL REVIEW D
LA English
DT Article
ID ROOT-S=1800 GEV; ANTIPROTON; COLLISIONS; PHYSICS
AB We report on a measurement of the fraction of events with a W or Z boson which are produced diffractively in (p) over barp collisions at root s = 1.96 TeV, using data from 0.6 fb-1 of integrated luminosity collected with the CDF II detector equipped with a Roman- pot spectrometer that detects the (p) over bar from (p) over bar + p -> (p) over bar + [X + W/Z]. We find that (1.00 +/- 0.11)% of Ws and (0.88 +/- 0.22)% of Zs are produced diffractively in a region of antiproton or proton fractional momentum loss xi of 0.03 < xi < 0.10 and 4-momentum transferred squared t of -1 < t < 0 (GeV/c)(2), where we account for the events in which the proton scatters diffractively while the antiproton dissociates, (p) over bar + p -> [X + W/Z] + p, by doubling the measured proton dissociation fraction. We also report on searches for W and Z production in double Pomeron exchange, (p) over bar + p -> [X + W/Z] + p, and on exclusive Z production, (p) over bar + p -> (p) over bar + Z + p. No signal is seen above background for these processes, and comparisons are made with expectations.
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   [Canepa, A.; Heinrich, J.; Keung, J.; Kroll, J.; Lipeles, E.; Lockyer, N. S.; Neu, C.; Pianori, E.; Rodriguez, T.; Thomson, E.; Tu, Y.; Wagner, P.; Whiteson, D.; Williams, H. H.] Univ Penn, Philadelphia, PA 19104 USA.
   [Barria, P.; Bedeschi, F.; Bellettini, G.; Bucciantonio, M.; Carosi, R.; Cavaliere, V.; Chiarelli, G.; Ciocci, M. A.; Crescioli, F.; Dell'Orso, M.; Di Canto, A.; Di Ruzza, B.; Donati, S.; Ferrazza, C.; Garosi, P.; Giannetti, P.; Giunta, M.; Introzzi, G.; Lami, S.; Latino, G.; Leo, S.; Leone, S.; Menzione, A.; Piacentino, G.; Punzi, G.; Ristori, L.; Ruffini, F.; Sartori, L.; Scribano, A.; Scuri, F.; Sforza, F.; Trovato, M.; Turini, N.; Vataga, E.; Volpi, G.] Ist Nazl Fis Nucl, I-56127 Pisa, Italy.
   [Bellettini, G.; Bucciantonio, M.; Crescioli, F.; Dell'Orso, M.; Di Canto, A.; Donati, S.; Leo, S.; Punzi, G.; Sforza, F.; Volpi, G.] Univ Pisa, I-56127 Pisa, Italy.
   [Barria, P.; Cavaliere, V.; Ciocci, M. A.; Garosi, P.; Latino, G.; Ruffini, F.; Scribano, A.; Turini, N.] Univ Siena, I-56127 Pisa, Italy.
   [Ferrazza, C.; Trovato, M.; Vataga, E.] Scuola Normale Super Pisa, I-56127 Pisa, Italy.
   [Boudreau, J.; Gibson, K.; Liu, C.; Rahaman, A.; Shepard, P. F.] Univ Pittsburgh, Pittsburgh, PA 15260 USA.
   [Apresyan, A.; Barnes, V. E.; Bortoletto, D.; Flanagan, G.; Garfinkel, A. F.; Jones, M.; Laasanen, A. T.; Liu, Q.; Margaroli, F.; Potamianos, K.; Ranjan, N.; Sedov, A.] Purdue Univ, W Lafayette, IN 47907 USA.
   [Bodek, A.; Budd, H. S.; Chung, Y. S.; de Barbaro, P.; Han, J. Y.; McFarland, K. S.; Sakumoto, W. K.] Univ Rochester, Rochester, NY 14627 USA.
   [Bhatti, A.; Demortier, L.; Gallinaro, M.; Goulianos, K.; Lungu, G.; Malik, S.; Mesropian, C.] Rockefeller Univ, New York, NY 10065 USA.
   [De Cecco, S.; Giagu, S.; Iori, M.; Mastrandrea, P.; Rescigno, M.] Ist Nazl Fis Nucl, Sez Roma, I-00185 Rome, Italy.
   [Giagu, S.; Iori, M.] Univ Roma La Sapienza, I-00185 Rome, Italy.
   [Halkiadakis, E.; Hare, D.; Hidas, D.; Lath, A.; Somalwar, S.] Rutgers State Univ, Piscataway, NJ 08855 USA.
   [Asaadi, J.; Aurisano, A.; Elagin, A.; Eusebi, R.; Goldin, D.; Kamon, T.; Khotilovich, V.; Krutelyov, V.; Lee, E.; Lee, S. W.; McIntyre, P.; Safonov, A.; Toback, D.; Weinberger, M.] Texas A&M Univ, College Stn, TX 77843 USA.
   [Cauz, D.; Pagliarone, C.; Pauletta, G.; Penzo, A.; Rossi, M.; Santi, L.; Totaro, P.; Zanetti, A.] Ist Nazl Fis Nucl Trieste Udine, I-34100 Trieste, Italy.
   [Pauletta, G.; Santi, L.; Totaro, P.] Univ Trieste Udine, I-33100 Udine, Italy.
   [Hara, K.; Kim, S. H.; Kurata, M.; Miyake, H.; Nagai, Y.; Sato, K.; Shimojima, M.; Sudo, Y.; Takemasa, K.; Takeuchi, Y.; Tomura, T.; Ukegawa, F.] Univ Tsukuba, Tsukuba, Ibaraki 305, Japan.
   [Hare, M.; Napier, A.; Rolli, S.; Sliwa, K.; Whitehouse, B.] Tufts Univ, Medford, MA 02155 USA.
   [Arisawa, T.; Ebina, K.; Kimura, N.; Kondo, K.; Naganoma, J.; Yorita, K.] Waseda Univ, Tokyo 169, Japan.
   [Harr, R. F.; Karchin, P. E.; Mattson, M. E.] Wayne State Univ, Detroit, MI 48201 USA.
   [Bellinger, J.; Carlsmith, D.; Chung, W. H.; Herndon, M.; Nett, J.; Pondrom, L.; Pursley, J.; Ramakrishnan, V.] Univ Wisconsin, Madison, WI 53706 USA.
   [Auerbach, B.; Almenar, C. Cuenca; Husemann, U.; Lockwitz, S.; Loginov, A.; Schmidt, M. P.; Stanitzki, M.] Yale Univ, New Haven, CT 06520 USA.
RP Aaltonen, T (reprint author), Univ Helsinki, Dept Phys, Div High Energy Phys, FIN-00014 Helsinki, Finland.
RI Piacentino, Giovanni/K-3269-2015; Martinez Ballarin,
   Roberto/K-9209-2015; Gorelov, Igor/J-9010-2015; Prokoshin,
   Fedor/E-2795-2012; Canelli, Florencia/O-9693-2016; Moon,
   Chang-Seong/J-3619-2014; Scodellaro, Luca/K-9091-2014; Grinstein,
   Sebastian/N-3988-2014; Paulini, Manfred/N-7794-2014; Russ,
   James/P-3092-2014; unalan, zeynep/C-6660-2015; Lazzizzera,
   Ignazio/E-9678-2015; Cabrera Urban, Susana/H-1376-2015; Garcia, Jose
   /H-6339-2015; Cavalli-Sforza, Matteo/H-7102-2015; ciocci, maria agnese
   /I-2153-2015; Chiarelli, Giorgio/E-8953-2012; Introzzi,
   Gianluca/K-2497-2015; Ruiz, Alberto/E-4473-2011; Robson,
   Aidan/G-1087-2011; De Cecco, Sandro/B-1016-2012; Lysak,
   Roman/H-2995-2014; St.Denis, Richard/C-8997-2012; manca,
   giulia/I-9264-2012; Amerio, Silvia/J-4605-2012; Punzi,
   Giovanni/J-4947-2012; Zeng, Yu/C-1438-2013; Annovi, Alberto/G-6028-2012;
   Ivanov, Andrew/A-7982-2013; Warburton, Andreas/N-8028-2013; Kim,
   Soo-Bong/B-7061-2014; 
OI Lancaster, Mark/0000-0002-8872-7292; Casarsa,
   Massimo/0000-0002-1353-8964; Latino, Giuseppe/0000-0002-4098-3502; iori,
   maurizio/0000-0002-6349-0380; Vidal Marono, Miguel/0000-0002-2590-5987;
   Nielsen, Jason/0000-0002-9175-4419; Piacentino,
   Giovanni/0000-0001-9884-2924; Martinez Ballarin,
   Roberto/0000-0003-0588-6720; Gorelov, Igor/0000-0001-5570-0133;
   Prokoshin, Fedor/0000-0001-6389-5399; Canelli,
   Florencia/0000-0001-6361-2117; Lami, Stefano/0000-0001-9492-0147;
   Margaroli, Fabrizio/0000-0002-3869-0153; Group,
   Robert/0000-0002-4097-5254; Simonenko, Alexander/0000-0001-6580-3638;
   Moon, Chang-Seong/0000-0001-8229-7829; Scodellaro,
   Luca/0000-0002-4974-8330; Grinstein, Sebastian/0000-0002-6460-8694;
   Paulini, Manfred/0000-0002-6714-5787; Russ, James/0000-0001-9856-9155;
   unalan, zeynep/0000-0003-2570-7611; Lazzizzera,
   Ignazio/0000-0001-5092-7531; ciocci, maria agnese /0000-0003-0002-5462;
   Chiarelli, Giorgio/0000-0001-9851-4816; Introzzi,
   Gianluca/0000-0002-1314-2580; Ruiz, Alberto/0000-0002-3639-0368; Punzi,
   Giovanni/0000-0002-8346-9052; Annovi, Alberto/0000-0002-4649-4398;
   Ivanov, Andrew/0000-0002-9270-5643; Warburton,
   Andreas/0000-0002-2298-7315; Jun, Soon Yung/0000-0003-3370-6109; Toback,
   David/0000-0003-3457-4144; Hays, Chris/0000-0003-2371-9723; Farrington,
   Sinead/0000-0001-5350-9271; Robson, Aidan/0000-0002-1659-8284;
   Gallinaro, Michele/0000-0003-1261-2277; Torre,
   Stefano/0000-0002-7565-0118; Turini, Nicola/0000-0002-9395-5230;
   Brucken, Jens Erik/0000-0001-6066-8756
FU U.S. Department of Energy; National Science Foundation; Italian Istituto
   Nazionale di Fisica Nucleare; Ministry of Education, Culture, Sports,
   Science, and Technology of Japan; Natural Sciences and Engineering
   Research Council of Canada; National Science Council of the Republic of
   China; Swiss National Science Foundation; A. P. Sloan Foundation;
   Bundesministerium fur Bildung und Forschung, Germany; World Class
   University; National Research Foundation of Korea; Science and
   Technology Facilities Council; Royal Society, UK; Institut National de
   Physique Nucleaire et Physique des Particules/CNRS; Russian Foundation
   for Basic Research; Ministerio de Ciencia e Innovacion; Slovak Research
   and Development Agency; Academy of Finland; Programa Consolider-Ingenio
   2010, Spain
FX We thank the Fermilab staff and the technical staffs of the
   participating institutions for their vital contributions. This work was
   supported by the U.S. Department of Energy and National Science
   Foundation; the Italian Istituto Nazionale di Fisica Nucleare; the
   Ministry of Education, Culture, Sports, Science, and Technology of
   Japan; the Natural Sciences and Engineering Research Council of Canada;
   the National Science Council of the Republic of China; the Swiss
   National Science Foundation; the A. P. Sloan Foundation; the
   Bundesministerium fur Bildung und Forschung, Germany; the World Class
   University Program, the National Research Foundation of Korea; the
   Science and Technology Facilities Council and the Royal Society, UK; the
   Institut National de Physique Nucleaire et Physique des Particules/CNRS;
   the Russian Foundation for Basic Research; the Ministerio de Ciencia e
   Innovacion, and Programa Consolider-Ingenio 2010, Spain; the Slovak
   Research and Development Agency; and the Academy of Finland.
NR 22
TC 14
Z9 14
U1 2
U2 16
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2470-0010
EI 2470-0029
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 10
PY 2010
VL 82
IS 11
AR 112004
DI 10.1103/PhysRevD.82.112004
PG 10
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DD
UT WOS:000286566300001
ER

PT J
AU Chen, HT
   Yang, H
   Singh, R
   O'Hara, JF
   Azad, AK
   Trugman, SA
   Jia, QX
   Taylor, AJ
AF Chen, Hou-Tong
   Yang, Hao
   Singh, Ranjan
   O'Hara, John F.
   Azad, Abul K.
   Trugman, Stuart A.
   Jia, Q. X.
   Taylor, Antoinette J.
TI Tuning the Resonance in High-Temperature Superconducting Terahertz
   Metamaterials
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID HANDED TRANSMISSION-LINES; SPLIT-RING RESONATORS
AB In this Letter, we present resonance properties in terahertz metamaterials consisting of a split-ring resonator array made from high-temperature superconducting films. By varying the temperature, we observe efficient metamaterial resonance switching and frequency tuning. The results are well reproduced by numerical simulations of metamaterial resonance using the experimentally measured complex conductivity of the superconducting film. We develop a theoretical model that explains the tuning features, which takes into account the resistive resonance damping and additional split-ring inductance contributed from both the real and imaginary parts of the temperature-dependent complex conductivity. The theoretical model further predicts more efficient resonance tuning in metamaterials consisting of a thinner superconducting split-ring resonator array, which are also verified in subsequent experiments.
C1 [Chen, Hou-Tong; Yang, Hao; Singh, Ranjan; O'Hara, John F.; Azad, Abul K.; Trugman, Stuart A.; Jia, Q. X.; Taylor, Antoinette J.] Los Alamos Natl Lab, MPA CINT, MS K771, Los Alamos, NM 87545 USA.
   [Yang, Hao] Soochow Univ, Sch Phys Sci & Technol, Suzhou 215006, Peoples R China.
RP Chen, HT (reprint author), Los Alamos Natl Lab, MPA CINT, MS K771, POB 1663, Los Alamos, NM 87545 USA.
EM chenht@lanl.gov
RI Singh, Ranjan/B-4091-2010; Jia, Q. X./C-5194-2008; Chen,
   Hou-Tong/C-6860-2009; Azad, Abul/B-1163-2011; 
OI Singh, Ranjan/0000-0001-8068-7428; Chen, Hou-Tong/0000-0003-2014-7571;
   Trugman, Stuart/0000-0002-6688-7228; Azad, Abul/0000-0002-7784-7432
FU Los Alamos National Laboratory; Center for Integrated Nanotechnologies
FX We acknowledge support from the Los Alamos National Laboratory LDRD
   Program and the Center for Integrated Nanotechnologies.
NR 34
TC 97
Z9 97
U1 6
U2 52
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 10
PY 2010
VL 105
IS 24
AR 247402
DI 10.1103/PhysRevLett.105.247402
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713OS
UT WOS:000286747900013
PM 21231556
ER

PT J
AU Pereira, HM
   Leadley, PW
   Proenca, V
   Alkemade, R
   Scharlemann, JPW
   Fernandez-Manjarres, JF
   Araujo, MB
   Balvanera, P
   Biggs, R
   Cheung, WWL
   Chini, L
   Cooper, HD
   Gilman, EL
   Guenette, S
   Hurtt, GC
   Huntington, HP
   Mace, GM
   Oberdorff, T
   Revenga, C
   Rodrigues, P
   Scholes, RJ
   Sumaila, UR
   Walpole, M
AF Pereira, Henrique M.
   Leadley, Paul W.
   Proenca, Vania
   Alkemade, Rob
   Scharlemann, Joern P. W.
   Fernandez-Manjarres, Juan F.
   Araujo, Miguel B.
   Balvanera, Patricia
   Biggs, Reinette
   Cheung, William W. L.
   Chini, Louise
   Cooper, H. David
   Gilman, Eric L.
   Guenette, Sylvie
   Hurtt, George C.
   Huntington, Henry P.
   Mace, Georgina M.
   Oberdorff, Thierry
   Revenga, Carmen
   Rodrigues, Patricia
   Scholes, Robert J.
   Sumaila, Ussif Rashid
   Walpole, Matt
TI Scenarios for Global Biodiversity in the 21st Century
SO SCIENCE
LA English
DT Review
ID CLIMATE-CHANGE; LAND-USE; MARINE ECOSYSTEMS; CHANGING CLIMATE; RANGE
   SHIFTS; FUTURE; MODELS; EXTINCTIONS; DISTRIBUTIONS; VULNERABILITY
AB Quantitative scenarios are coming of age as a tool for evaluating the impact of future socioeconomic development pathways on biodiversity and ecosystem services. We analyze global terrestrial, freshwater, and marine biodiversity scenarios using a range of measures including extinctions, changes in species abundance, habitat loss, and distribution shifts, as well as comparing model projections to observations. Scenarios consistently indicate that biodiversity will continue to decline over the 21st century. However, the range of projected changes is much broader than most studies suggest, partly because there are major opportunities to intervene through better policies, but also because of large uncertainties in projections.
C1 [Pereira, Henrique M.; Proenca, Vania; Rodrigues, Patricia] Univ Lisbon, Fac Ciencias, Ctr Biol Ambiental, P-1749016 Lisbon, Portugal.
   [Leadley, Paul W.; Fernandez-Manjarres, Juan F.] Univ Paris 11, CNRS, Lab Ecol Systemat & Evolut, UMR 8079, F-91405 Orsay, France.
   [Alkemade, Rob] Netherlands Environm Assessment Agcy PBL, NL-3720 AH Bilthoven, Netherlands.
   [Scharlemann, Joern P. W.; Walpole, Matt] United Nations Environm Programme World Conservat, Cambridge CB3 0EL, England.
   [Araujo, Miguel B.] CSIC, Museo Nacl Ciencias Nat, Dept Biodiversidad & Biol Evolut, E-28006 Madrid, Spain.
   [Araujo, Miguel B.] Univ Evora, Ctr Invest Biodiversidade & Recursos Genet, Catedra Rui Nabeiro Biodiversidade, P-7000 Evora, Portugal.
   [Balvanera, Patricia] Univ Nacl Autonoma Mexico, Ctr Invest Ecosistemas, Morelia 58090, Michoacan, Mexico.
   [Biggs, Reinette] Stockholm Univ, Stockholm Resilience Ctr, S-10691 Stockholm, Sweden.
   [Cheung, William W. L.] Univ E Anglia, Sch Environm Sci, Norwich NR4 7TJ, Norfolk, England.
   [Chini, Louise; Hurtt, George C.] Univ Maryland, Dept Geog, College Pk, MD 20742 USA.
   [Cooper, H. David] World Trade Ctr, Secretariat Convent Biol Divers, Montreal, PQ H2Y 1N9, Canada.
   [Gilman, Eric L.] Hawaii Pacific Univ, Coll Nat & Computat Sci, Honolulu, HI 96822 USA.
   [Guenette, Sylvie; Sumaila, Ussif Rashid] Univ British Columbia, AERL, Fisheries Ctr, Vancouver, BC V6T 1Z4, Canada.
   [Hurtt, George C.] Pacific NW Natl Lab, Joint Global Change Res Inst, College Pk, MD 20740 USA.
   [Huntington, Henry P.] Pew Environm Grp, Eagle River, AK 99577 USA.
   [Mace, Georgina M.] Univ London Imperial Coll Sci Technol & Med, Ctr Populat Biol, Ascot SL5 7PY, Berks, England.
   [Oberdorff, Thierry] Museum Natl Hist Nat, UMR IRD 207, Lab Biol Organismes & Ecosyst Aquat, F-75005 Paris, France.
   [Revenga, Carmen] Nature Conservancy, Arlington, VA 22203 USA.
   [Scholes, Robert J.] CSIR Nat Resources & Environm, ZA-0001 Pretoria, South Africa.
RP Pereira, HM (reprint author), Univ Lisbon, Fac Ciencias, Ctr Biol Ambiental, P-1749016 Lisbon, Portugal.
EM hpereira@fc.ul.pt
RI Biggs, Reinette/A-5155-2010; MNHN/CNRS/UPMC/IRD, UMR BOREA/B-2312-2012;
   Araujo, Miguel/B-6117-2008; Scharlemann, Jorn/A-4737-2008; oberdorff,
   thierry/I-3109-2016; Mace, Georgina/I-3072-2016; Pereira,
   Henrique/B-3975-2009; Hurtt, George/A-8450-2012; Leadley,
   Paul/E-4773-2012; Cheung, William/F-5104-2013; Proenca,
   Vania/H-9372-2013; Rodrigues, Patricia /L-7883-2013
OI Scholes, Robert/0000-0001-5537-6935; Araujo, Miguel/0000-0002-5107-7265;
   Scharlemann, Jorn/0000-0002-2834-6367; Mace,
   Georgina/0000-0001-8965-5211; Pereira, Henrique/0000-0003-1043-1675;
   Cheung, William/0000-0003-3626-1045; Proenca, Vania/0000-0001-8245-357X;
   
FU Department of the Environment, Food and Rural Affairs of the UK;
   European Commission; UNEP; Fundacao para a Ciencia e Tecnologia
   [PTDC/AMB/73901/2006]
FX This work was developed in the context of a scenarios synthesis
   coordinated by DIVERSITAS and UNEP World Conservation Monitoring Centre
   for the Secretariat of the Convention on Biological Diversity, with
   financial support from the Department of the Environment, Food and Rural
   Affairs of the UK, the European Commission, and UNEP. We thank L.
   Simpson for organizing a workshop. H. M. P. was supported in part by
   grant PTDC/AMB/73901/2006 from Fundacao para a Ciencia e Tecnologia.
NR 60
TC 514
Z9 537
U1 75
U2 716
PU AMER ASSOC ADVANCEMENT SCIENCE
PI WASHINGTON
PA 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA
SN 0036-8075
J9 SCIENCE
JI Science
PD DEC 10
PY 2010
VL 330
IS 6010
BP 1496
EP 1501
DI 10.1126/science.1196624
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 692LE
UT WOS:000285153500053
PM 20978282
ER

PT J
AU Huang, JY
   Zhong, L
   Wang, CM
   Sullivan, JP
   Xu, W
   Zhang, LQ
   Mao, SX
   Hudak, NS
   Liu, XH
   Subramanian, A
   Fan, HY
   Qi, LA
   Kushima, A
   Li, J
AF Huang, Jian Yu
   Zhong, Li
   Wang, Chong Min
   Sullivan, John P.
   Xu, Wu
   Zhang, Li Qiang
   Mao, Scott X.
   Hudak, Nicholas S.
   Liu, Xiao Hua
   Subramanian, Arunkumar
   Fan, Hongyou
   Qi, Liang
   Kushima, Akihiro
   Li, Ju
TI In Situ Observation of the Electrochemical Lithiation of a Single SnO2
   Nanowire Electrode
SO SCIENCE
LA English
DT Article
ID SOLID-STATE AMORPHIZATION; RECHARGEABLE LITHIUM BATTERIES; SILICON;
   DISLOCATIONS; DIFFUSIVITY; CRYSTAL; LICOO2; ALLOYS; LI2O
AB We report the creation of a nanoscale electrochemical device inside a transmission electron microscope-consisting of a single tin dioxide (SnO2) nanowire anode, an ionic liquid electrolyte, and a bulk lithium cobalt dioxide (LiCoO2) cathode-and the in situ observation of the lithiation of the SnO2 nanowire during electrochemical charging. Upon charging, a reaction front propagated progressively along the nanowire, causing the nanowire to swell, elongate, and spiral. The reaction front is a "Medusa zone" containing a high density of mobile dislocations, which are continuously nucleated and absorbed at the moving front. This dislocation cloud indicates large in-plane misfit stresses and is a structural precursor to electrochemically driven solid-state amorphization. Because lithiation-induced volume expansion, plasticity, and pulverization of electrode materials are the major mechanical effects that plague the performance and lifetime of high-capacity anodes in lithium-ion batteries, our observations provide important mechanistic insight for the design of advanced batteries.
C1 [Huang, Jian Yu; Sullivan, John P.; Hudak, Nicholas S.; Liu, Xiao Hua; Subramanian, Arunkumar] Sandia Natl Labs, Ctr Integrated Nanotechnol, Albuquerque, NM 87185 USA.
   [Zhong, Li; Zhang, Li Qiang; Mao, Scott X.] Univ Pittsburgh, Dept Mech Engn & Mat Sci, Pittsburgh, PA 15261 USA.
   [Wang, Chong Min] Pacific NW Natl Lab, Environm Mol Sci Lab, Richland, WA 99354 USA.
   [Xu, Wu] Pacific NW Natl Lab, Energy & Environm Directorate, Richland, WA 99354 USA.
   [Fan, Hongyou] Sandia Natl Labs, Adv Mat Lab, Albuquerque, NM 87106 USA.
   [Qi, Liang; Li, Ju] Xi An Jiao Tong Univ, State Key Lab Mech Behav Mat, Xian 710049, Peoples R China.
   [Qi, Liang; Li, Ju] Xi An Jiao Tong Univ, Frontier Inst Sci & Technol, Xian 710049, Peoples R China.
   [Qi, Liang; Kushima, Akihiro; Li, Ju] Univ Penn, Dept Mat Sci & Engn, Philadelphia, PA 19104 USA.
RP Huang, JY (reprint author), Sandia Natl Labs, Ctr Integrated Nanotechnol, POB 5800, Albuquerque, NM 87185 USA.
EM jhuang@sandia.gov; chongmin.wang@pnl.gov; jpsulli@sandia.gov;
   sxm2@pitt.edu; liju@seas.upenn.edu
RI Qi, Liang/A-3851-2010; Liu, Xiaohua/A-8752-2011; Huang,
   Jianyu/C-5183-2008; Hudak, Nicholas/D-3529-2011; Li, Ju/A-2993-2008;
   Zhong, Li/I-3714-2014; Zhang, Liqiang/E-6539-2015; Kushima,
   Akihiro/H-2347-2011
OI Qi, Liang/0000-0002-0201-9333; Liu, Xiaohua/0000-0002-7300-7145; Li,
   Ju/0000-0002-7841-8058; Zhang, Liqiang/0000-0001-7482-0739; 
FU Sandia National Laboratories (SNL); U.S. Department of Energy (DOE),
   Office of Science, Office of Basic Energy Sciences (BES) [DESC0001160];
   DOE's National Nuclear Security Administration [DE-AC04-94AL85000]; DOE
   Office of Science, Offices of Biological and Environmental Research;
   DOE's Office of Biological and Environmental Research at Pacific
   Northwest National Laboratory [DE-AC05-76RLO1830]; Honda Research
   Institute USA; Xi'an Jiaotong University; NSF [CMMI-0728069,
   DMR-1008104, DMR-0520020]; Air Force Office of Scientific Research
   [FA9550-08-1-0325]; NSF through the University of Pittsburgh
   [CMMI0825842, CMMI0928517]; NSF through SNL [CMMI0825842, CMMI0928517];
   Chinese Scholarship Council
FX J.Y.H. thanks K. Xu for valuable discussions. Supported by a Laboratory
   Directed Research and Development (LDRD) project at Sandia National
   Laboratories (SNL) and by the Science of Precision Multifunctional
   Nanostructures for Electrical Energy Storage (NEES), an Energy Frontier
   Research Center funded by the U.S. Department of Energy (DOE), Office of
   Science, Office of Basic Energy Sciences (BES) under award DESC0001160.
   This work was performed in part at the Sandia-Los Alamos Center for
   Integrated Nanotechnologies (CINT), a U.S. DOE, Office of BES user
   facility. The LDRD supported the development and fabrication of
   platforms and the development of TEM techniques. The NEES center
   supported some of the additional platform development and fabrication
   and materials characterization. CINT supported the TEM capability and
   the fabrication capabilities that were used for the TEM
   characterization, and this work represents the efforts of several CINT
   users, primarily those with affiliation external to SNL. SNL is a
   multiprogram laboratory operated by Sandia Corporation, a wholly owned
   subsidiary of Lockheed Martin company, for the DOE's National Nuclear
   Security Administration under contract DE-AC04-94AL85000. The work of C.
   M. W. and W. X. was supported by the DOE Office of Science, Offices of
   Biological and Environmental Research, and was conducted in the
   Environmental Molecular Sciences Laboratory, a national scientific user
   facility sponsored by DOE's Office of Biological and Environmental
   Research and located at Pacific Northwest National Laboratory, which is
   operated by Battelle for the DOE under contract DE-AC05-76RLO1830. L.
   Q., A. K., and J.L. were supported by Honda Research Institute USA,
   Xi'an Jiaotong University, NSF grants CMMI-0728069, DMR-1008104, and
   DMR-0520020, and Air Force Office of Scientific Research grant
   FA9550-08-1-0325. S. X. M., L.Z., and L.Q.Z. were supported by NSF
   grants CMMI0825842 and CMMI0928517 through the University of Pittsburgh
   and SNL. L.Q.Z. thanks the Chinese Scholarship Council for financial
   support and Z. Ye's encouragement from Zhejiang University.
NR 34
TC 619
Z9 627
U1 112
U2 877
PU AMER ASSOC ADVANCEMENT SCIENCE
PI WASHINGTON
PA 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA
SN 0036-8075
J9 SCIENCE
JI Science
PD DEC 10
PY 2010
VL 330
IS 6010
BP 1515
EP 1520
DI 10.1126/science.1195628
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 692LE
UT WOS:000285153500058
PM 21148385
ER

PT J
AU Baxter, L
   Tripathy, S
   Ishaque, N
   Boot, N
   Cabral, A
   Kemen, E
   Thines, M
   Ah-Fong, A
   Anderson, R
   Badejoko, W
   Bittner-Eddy, P
   Boore, JL
   Chibucos, MC
   Coates, M
   Dehal, P
   Delehaunty, K
   Dong, SM
   Downton, P
   Dumas, B
   Fabro, G
   Fronick, C
   Fuerstenberg, SI
   Fulton, L
   Gaulin, E
   Govers, F
   Hughes, L
   Humphray, S
   Jiang, RHY
   Judelson, H
   Kamoun, S
   Kyung, K
   Meijer, H
   Minx, P
   Morris, P
   Nelson, J
   Phuntumart, V
   Qutob, D
   Rehmany, A
   Rougon-Cardoso, A
   Ryden, P
   Torto-Alalibo, T
   Studholme, D
   Wang, YC
   Win, J
   Wood, J
   Clifton, SW
   Rogers, J
   Van den Ackerveken, G
   Jones, JDG
   McDowell, JM
   Beynon, J
   Tyler, BM
AF Baxter, Laura
   Tripathy, Sucheta
   Ishaque, Naveed
   Boot, Nico
   Cabral, Adriana
   Kemen, Eric
   Thines, Marco
   Ah-Fong, Audrey
   Anderson, Ryan
   Badejoko, Wole
   Bittner-Eddy, Peter
   Boore, Jeffrey L.
   Chibucos, Marcus C.
   Coates, Mary
   Dehal, Paramvir
   Delehaunty, Kim
   Dong, Suomeng
   Downton, Polly
   Dumas, Bernard
   Fabro, Georgina
   Fronick, Catrina
   Fuerstenberg, Susan I.
   Fulton, Lucinda
   Gaulin, Elodie
   Govers, Francine
   Hughes, Linda
   Humphray, Sean
   Jiang, Rays H. Y.
   Judelson, Howard
   Kamoun, Sophien
   Kyung, Kim
   Meijer, Harold
   Minx, Patrick
   Morris, Paul
   Nelson, Joanne
   Phuntumart, Vipa
   Qutob, Dinah
   Rehmany, Anne
   Rougon-Cardoso, Alejandra
   Ryden, Peter
   Torto-Alalibo, Trudy
   Studholme, David
   Wang, Yuanchao
   Win, Joe
   Wood, Jo
   Clifton, Sandra W.
   Rogers, Jane
   Van den Ackerveken, Guido
   Jones, Jonathan D. G.
   McDowell, John M.
   Beynon, Jim
   Tyler, Brett M.
TI Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora
   arabidopsidis Genome
SO SCIENCE
LA English
DT Article
ID SOJAE-EFFECTOR AVR1B; DOWNY MILDEW; PHYTOPHTHORA; PLANT; THALIANA;
   CELLS; SUPPRESSION; PARASITES; PROTEINS; DELIVERY
AB Many oomycete and fungal plant pathogens are obligate biotrophs, which extract nutrients only from living plant tissue and cannot grow apart from their hosts. Although these pathogens cause substantial crop losses, little is known about the molecular basis or evolution of obligate biotrophy. Here, we report the genome sequence of the oomycete Hyaloperonospora arabidopsidis (Hpa), an obligate biotroph and natural pathogen of Arabidopsis thaliana. In comparison with genomes of related, hemibiotrophic Phytophthora species, the Hpa genome exhibits dramatic reductions in genes encoding (i) RXLR effectors and other secreted pathogenicity proteins, (ii) enzymes for assimilation of inorganic nitrogen and sulfur, and (iii) proteins associated with zoospore formation and motility. These attributes comprise a genomic signature of evolution toward obligate biotrophy.
C1 [Anderson, Ryan; McDowell, John M.; Tyler, Brett M.] Virginia Polytech Inst & State Univ, Dept Plant Pathol Physiol & Weed Sci, Blacksburg, VA 24061 USA.
   [Baxter, Laura; Badejoko, Wole; Bittner-Eddy, Peter; Coates, Mary; Downton, Polly; Hughes, Linda; Rehmany, Anne; Ryden, Peter; Beynon, Jim] Univ Warwick, Sch Life Sci, Wellesbourne CV35 9EF, Warwick, England.
   [Tripathy, Sucheta; Chibucos, Marcus C.; Torto-Alalibo, Trudy; Tyler, Brett M.] Virginia Polytech Inst & State Univ, Virginia Bioinformat Inst, Blacksburg, VA 24061 USA.
   [Ishaque, Naveed; Kemen, Eric; Thines, Marco; Fabro, Georgina; Kamoun, Sophien; Rougon-Cardoso, Alejandra; Studholme, David; Win, Joe; Jones, Jonathan D. G.] John Innes Ctr, Sainsbury Lab, Norwich NR4 7UH, Norfolk, England.
   [Boot, Nico; Cabral, Adriana; Van den Ackerveken, Guido] Univ Utrecht, Dept Biol, NL-3584 CH Utrecht, Netherlands.
   [Thines, Marco] Biodivers & Climate Res Ctr BiK F, D-60325 Frankfurt, Germany.
   [Thines, Marco] Goethe Univ Frankfurt, Dept Biol Sci, Inst Ecol Evolut & Divers, D-60323 Frankfurt, Germany.
   [Ah-Fong, Audrey; Judelson, Howard] Univ Calif Riverside, Dept Plant Pathol & Microbiol, Riverside, CA 92521 USA.
   [Boore, Jeffrey L.; Fuerstenberg, Susan I.] Univ Calif Berkeley, Dept Integrat Biol, Berkeley, CA 94720 USA.
   [Dehal, Paramvir] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Delehaunty, Kim; Fronick, Catrina; Fulton, Lucinda; Kyung, Kim; Minx, Patrick; Nelson, Joanne; Clifton, Sandra W.] Washington Univ, Sch Med, Genome Sequencing Ctr, St Louis, MO 63110 USA.
   [Dong, Suomeng; Qutob, Dinah] Agr & Agri Food Canada, London, ON N5V 4T3, Canada.
   [Dong, Suomeng; Wang, Yuanchao] Nanjing Agr Univ, Dept Plant Pathol, Nanjing 210095, Peoples R China.
   [Dumas, Bernard; Gaulin, Elodie] Univ Toulouse, UPS, F-31326 Castanet Tolosan, France.
   [Dumas, Bernard; Gaulin, Elodie] CNRS, F-31326 Castanet Tolosan, France.
   [Govers, Francine; Jiang, Rays H. Y.; Meijer, Harold] Wageningen Univ, Phytopathol Lab, NL-16708 PB Wageningen, Netherlands.
   [Govers, Francine; Jiang, Rays H. Y.; Meijer, Harold] Ctr BioSyst Genom, NL-16708 PB Wageningen, Netherlands.
   [Humphray, Sean; Wood, Jo; Rogers, Jane] Sanger, Cambridge CB10 1SA, England.
   [Jiang, Rays H. Y.] MIT & Harvard, Broad Inst, Cambridge, MA 02141 USA.
   [Morris, Paul; Phuntumart, Vipa] Bowling Green State Univ, Dept Biol Sci, Bowling Green, OH 43403 USA.
RP McDowell, JM (reprint author), Virginia Polytech Inst & State Univ, Dept Plant Pathol Physiol & Weed Sci, Blacksburg, VA 24061 USA.
EM johnmcd@vt.edu
RI Kamoun, Sophien/B-3529-2009; Van den Ackerveken, Guido/B-8568-2011;
   Piper, Walter/B-7908-2009; Jones, Jonathan/J-5129-2012; Thines,
   Marco/H-1685-2011; Biodiversity & Climate Res Ctr, BiK-F/C-4266-2012;
   Govers, Francine/A-5616-2009; Win, Joe/H-2557-2014; Dumas,
   Bernard/D-1751-2009; 
OI Kamoun, Sophien/0000-0002-0290-0315; Van den Ackerveken,
   Guido/0000-0002-0183-8978; Jones, Jonathan/0000-0002-4953-261X; Ishaque,
   Naveed/0000-0002-8426-901X; Govers, Francine/0000-0001-5311-929X; Win,
   Joe/0000-0002-9851-2404; Dumas, Bernard/0000-0002-4138-3533; Studholme,
   David/0000-0002-3010-6637; McDowell, John/0000-0002-9070-4874; Downton,
   Polly/0000-0002-1617-6153; wang, yuanchao/0000-0001-5803-5343; Chibucos,
   Marcus/0000-0001-9586-0780; Kemen, Eric/0000-0002-7924-116X
FU U.S. NSF [EF-0412213, IOS-0744875, IOS-0924861, MCB-0639226]; U.S.
   Department of Agriculture National Institute of Food and Agriculture
   [2004-35600-15055, 2007-35319-18100]; Biotechnology and Biological
   Sciences Research Council (BBSRC) [BB/C509123/1, BB/E024815/1,
   BB/F0161901, T12144]; Engineering and Physical Sciences Research
   Council/BBSRC [EP/F500025/1]; Gatsby [GAT2545]
FX We thank E. Holub for providing the Emoy2 isolate, D. Greenshields and
   N. Bruce for technical assistance, A. Heck and M. Slijper for analysis
   of secreted Hpa proteins, R. Hubley for creating repeat modeller
   libraries, and participants in the 2007 Annotation Jamboree and in the
   2008 and 2009 Oomycete Bioinformatics Training Workshops for sequence
   annotations. This research was supported by grants EF-0412213,
   IOS-0744875, IOS-0924861, and MCB-0639226 from the U.S. NSF and
   2004-35600-15055 and 2007-35319-18100 from the U.S. Department of
   Agriculture National Institute of Food and Agriculture to B. M. T. and
   J.M.M.; Biotechnology and Biological Sciences Research Council (BBSRC)
   BB/C509123/1, BB/E024815/1, and Engineering and Physical Sciences
   Research Council/BBSRC Systems Biology DTC student EP/F500025/1 to J.B.;
   Gatsby GAT2545 and BBSRC BB/F0161901, BB/E024882/1, and BBSRC CASE
   studentship T12144 to J.D.G.J. Other support is detailed in the
   supporting online material. Genome browsers are maintained at the
   Virginia Bioinformatics Institute (vmd.vbi.vt.edu) and the Sainsbury
   Laboratories
   (gbrowse2.tsl.ac.uk/cgi-bin/gb2/gbrowse/hpa_emoy2_publication).
NR 27
TC 186
Z9 189
U1 8
U2 76
PU AMER ASSOC ADVANCEMENT SCIENCE
PI WASHINGTON
PA 1200 NEW YORK AVE, NW, WASHINGTON, DC 20005 USA
SN 0036-8075
J9 SCIENCE
JI Science
PD DEC 10
PY 2010
VL 330
IS 6010
BP 1549
EP 1551
DI 10.1126/science.1195203
PG 3
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 692LE
UT WOS:000285153500068
PM 21148394
ER

PT J
AU Kioupakis, E
   Tiago, ML
   Louie, SG
AF Kioupakis, Emmanouil
   Tiago, Murilo L.
   Louie, Steven G.
TI Quasiparticle electronic structure of bismuth telluride in the GW
   approximation
SO PHYSICAL REVIEW B
LA English
DT Article
ID THERMOELECTRIC PROPERTIES; WANNIER FUNCTIONS; BI2TE3; SEMICONDUCTORS;
   INSULATORS; ENERGY; BAND; PSEUDOPOTENTIALS
AB The quasiparticle band structure of bismuth telluride (Bi2Te3), an important thermoelectric material that exhibits topologically insulating surface states, is calculated from first principles in the GW approximation. The quasiparticle energies are evaluated in fine detail in the first Brillouin zone using a Wannier-function interpolation method, allowing the accurate determination of the location of the band extrema (which is in the mirror plane) as well as the values of the quasiparticle band gap (0.17 eV) and effective-mass tensors. Spin-orbit interaction effects were included. The valence band exhibits two distinct maxima in the mirror plane that differ by just 1 meV, giving rise to one direct and one indirect band gap of very similar magnitude. The effective-mass tensors are in reasonable agreement with experiment. The Wannier interpolation coefficients can be used for the tight-binding parametrization of the band structure. Our work elucidates the electronic structure of Bi2Te3 and sheds light on its exceptional thermoelectric and topologically insulating properties.
C1 [Kioupakis, Emmanouil; Tiago, Murilo L.; Louie, Steven G.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Kioupakis, Emmanouil; Tiago, Murilo L.; Louie, Steven G.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Kioupakis, Emmanouil] Univ Calif Santa Barbara, Dept Mat, Santa Barbara, CA 93106 USA.
   [Tiago, Murilo L.] Oak Ridge Natl Lab, Mat Sci & Technol Div, Oak Ridge, TN 37831 USA.
RP Kioupakis, E (reprint author), Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
RI Kioupakis, Emmanouil/L-4504-2013; 
OI Kioupakis, Emmanouil/0000-0003-1880-6443
FU National Science Foundation [DMR07-05941]; Director, Office of Science,
   Office of Basic Energy Sciences, Division of Materials Sciences and
   Engineering Division, U.S. Department of Energy [DE-AC02-05CH11231];
   "Alexander S. Onassis" Foundation; NSF
FX We thank Peihong Zhang, Jonathan Yates, Ivo Souza, Feliciano Giustino,
   and Manish Jain for helpful discussions. This work was supported by
   National Science Foundation under Grant No. DMR07-05941 and by the
   Director, Office of Science, Office of Basic Energy Sciences, Division
   of Materials Sciences and Engineering Division, U.S. Department of
   Energy under Contract No. DE-AC02-05CH11231. E.K. was supported by DOE
   and the "Alexander S. Onassis" Foundation. M.L.T. was supported by NSF.
   Graphics were generated using the XCRYSDEN program (Ref. 31) and the
   Wannier functions were calculated with the WANNIER90 code (Ref. 21).
   Computational resources were provided by the Department of Energy at the
   National Energy Research Scientific Computing Center (NERSC) and
   Teragrid.
NR 31
TC 24
Z9 25
U1 0
U2 20
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
EI 1550-235X
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 9
PY 2010
VL 82
IS 24
AR 245203
DI 10.1103/PhysRevB.82.245203
PG 4
WC Physics, Condensed Matter
SC Physics
GA 715PF
UT WOS:000286895700004
ER

PT J
AU Miller, RL
   Xie, Z
   Leyffer, S
   Davis, MJ
   Gray, SK
AF Miller, Ryan L.
   Xie, Zhen
   Leyffer, Sven
   Davis, Michael J.
   Gray, Stephen K.
TI Surrogate-Based Modeling of the Optical Response of Metallic
   Nanostructures
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID NONSTATIONARY COVARIANCE FUNCTIONS; ADAPTIVE DIRECT SEARCH; GLOBAL
   OPTIMIZATION; ALGORITHMS; SURFACES; MEDIA; SERS
AB We discuss how to apply the Gaussian process model (GPM), also known as "Kriging," to the optimization of the optical response of metallic nanostructures. The optical response is calculated with the finite-difference time-domain method, and GPM allows one to locate maxima of the response in a multidimensional system parameter space. A pattern search method is used to validate and slightly improve upon the maxima that we locate. The optical response investigated, the near-field intensity enhancement above a periodic metallic slit structure, is found to be a complicated function consisting of several ridges that make it a very challenging optimization problem. A simple physical analysis is also presented to explain the origins of the system response structure.
C1 [Miller, Ryan L.; Gray, Stephen K.] Argonne Natl Lab, Ctr Nanoscale Mat, Div Math & Comp Sci, Argonne, IL 60439 USA.
   [Davis, Michael J.] Argonne Natl Lab, Chem Sci & Engn Div, Argonne, IL 60439 USA.
RP Gray, SK (reprint author), Argonne Natl Lab, Ctr Nanoscale Mat, Div Math & Comp Sci, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM gray@anl.gov
RI Xie, Zhen/A-5087-2009
FU U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences [DE-AC02-06CH11357]; Office of Advanced Scientific Computing
   Research, Office of Science, U.S. Department of Energy
   [DE-AC02-06CH11357]; Division of Chemical Sciences, Geosciences, U.S.
   Department of Energy [DE-AC02-06CH11357]
FX Use of the Center for Nanoscale Materials at Argonne National Laboratory
   was supported by U.S. Department of Energy, Office of Science, Office of
   Basic Energy Sciences, under Contract No. DE-AC02-06CH11357. ZH and SL
   were supported by the Office of Advanced Scientific Computing Research,
   Office of Science, U.S. Department of Energy, under Contract
   DE-AC02-06CH11357. MJD was supported by the Division of Chemical
   Sciences, Geosciences, U.S. Department of Energy, under Contract
   DE-AC02-06CH11357.
NR 42
TC 4
Z9 4
U1 0
U2 8
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 9
PY 2010
VL 114
IS 48
BP 20741
EP 20748
DI 10.1021/jp1067632
PG 8
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 686YS
UT WOS:000284738900055
ER

PT J
AU Xiao, BW
   Yuan, F
AF Xiao, Bo-Wen
   Yuan, Feng
TI Initial and final state interaction effects in small-x quark
   distributions
SO PHYSICAL REVIEW D
LA English
DT Article
ID GENERALIZED PARTON DISTRIBUTIONS; GLUON DISTRIBUTION-FUNCTIONS;
   DEEP-INELASTIC SCATTERING; DEUTERON-GOLD COLLISIONS; SINGLE-SPIN
   ASYMMETRIES; LARGE NUCLEI; AZIMUTHAL CORRELATIONS; PERTURBATIVE QCD;
   HARD PROCESSES; JET PRODUCTION
AB We study the initial and final state interaction effects in the transverse momentum dependent parton distributions in the small-x saturation region. In particular, we discuss the quark distributions in the semi-inclusive deep inelastic scattering, Drell-Yan lepton pair production, and dijet-correlation processes in pA collisions. We calculate the quark distributions in the scalar-QED model and then extend to the color glass condensate formalism in QCD. The quark distributions are found universal between the deep inelastic scattering and Drell-Yan processes. On the other hand, the quark distribution from the qq' -> qq' channel contribution to the dijet-correlation process is not universal. However, we find that it can be related to the quark distribution in deep inelastic scattering process by a convolution with the normalized unintegrated gluon distribution in the color glass condensate formalism in the large N(c) limit.
C1 [Xiao, Bo-Wen; Yuan, Feng] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Nucl Sci, Berkeley, CA 94720 USA.
   [Yuan, Feng] Brookhaven Natl Lab, RIKEN BNL Res Ctr, Upton, NY 11973 USA.
RP Xiao, BW (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Nucl Sci, 1 Cyclotron Rd, Berkeley, CA 94720 USA.
RI Yuan, Feng/N-4175-2013
FU U.S. Department of Energy [DE-AC02-05CH11231, DE-AC02-98CH10886]
FX We thank Tony Baltz, Stan Brodsky, Fabio Dominguez, Paul Hoyer, Cyrille
   Marquet, Larry McLarran, Al Mueller, Jianwei Qiu, and Raju Venugopolan
   for interesting discussions. This work was supported in part by the U.S.
   Department of Energy under Contract No. DE-AC02-05CH11231. We are
   grateful to RIKEN, Brookhaven National Laboratory, and the U.S.
   Department of Energy (Contract No. DE-AC02-98CH10886) for providing the
   facilities essential for the completion of this work.
NR 55
TC 9
Z9 9
U1 0
U2 0
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 9
PY 2010
VL 82
IS 11
AR 114009
DI 10.1103/PhysRevD.82.114009
PG 13
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DC
UT WOS:000286566200004
ER

PT J
AU Schwalm, CR
   Williams, CA
   Schaefer, K
   Anderson, R
   Arain, MA
   Baker, I
   Barr, A
   Black, TA
   Chen, GS
   Chen, JM
   Ciais, P
   Davis, KJ
   Desai, A
   Dietze, M
   Dragoni, D
   Fischer, ML
   Flanagan, LB
   Grant, R
   Gu, LH
   Hollinger, D
   Izaurralde, RC
   Kucharik, C
   Lafleur, P
   Law, BE
   Li, LH
   Li, ZP
   Liu, SG
   Lokupitiya, E
   Luo, YQ
   Ma, SY
   Margolis, H
   Matamala, R
   McCaughey, H
   Monson, RK
   Oechel, WC
   Peng, CH
   Poulter, B
   Price, DT
   Riciutto, DM
   Riley, W
   Sahoo, AK
   Sprintsin, M
   Sun, JF
   Tian, HQ
   Tonitto, C
   Verbeeck, H
   Verma, SB
AF Schwalm, Christopher R.
   Williams, Christopher A.
   Schaefer, Kevin
   Anderson, Ryan
   Arain, M. Altaf
   Baker, Ian
   Barr, Alan
   Black, T. Andrew
   Chen, Guangsheng
   Chen, Jing Ming
   Ciais, Philippe
   Davis, Kenneth J.
   Desai, Ankur
   Dietze, Michael
   Dragoni, Danilo
   Fischer, Marc L.
   Flanagan, Lawrence B.
   Grant, Robert
   Gu, Lianhong
   Hollinger, David
   Izaurralde, R. Cesar
   Kucharik, Chris
   Lafleur, Peter
   Law, Beverly E.
   Li, Longhui
   Li, Zhengpeng
   Liu, Shuguang
   Lokupitiya, Erandathie
   Luo, Yiqi
   Ma, Siyan
   Margolis, Hank
   Matamala, Roser
   McCaughey, Harry
   Monson, Russell K.
   Oechel, Walter C.
   Peng, Changhui
   Poulter, Benjamin
   Price, David T.
   Riciutto, Dan M.
   Riley, William
   Sahoo, Alok Kumar
   Sprintsin, Michael
   Sun, Jianfeng
   Tian, Hanqin
   Tonitto, Christina
   Verbeeck, Hans
   Verma, Shashi B.
TI A model-data intercomparison of CO2 exchange across North America:
   Results from the North American Carbon Program site synthesis
SO JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES
LA English
DT Article
ID NET ECOSYSTEM EXCHANGE; GLOBAL VEGETATION MODEL; MIXED HARDWOOD FOREST;
   EDDY COVARIANCE DATA; LEAF-AREA INDEX; INTERANNUAL VARIABILITY; DIOXIDE
   EXCHANGE; PRIMARY PRODUCTIVITY; UNITED-STATES; ATMOSPHERE EXCHANGE
AB Our current understanding of terrestrial carbon processes is represented in various models used to integrate and scale measurements of CO2 exchange from remote sensing and other spatiotemporal data. Yet assessments are rarely conducted to determine how well models simulate carbon processes across vegetation types and environmental conditions. Using standardized data from the North American Carbon Program we compare observed and simulated monthly CO2 exchange from 44 eddy covariance flux towers in North America and 22 terrestrial biosphere models. The analysis period spans similar to 220 site-years, 10 biomes, and includes two large-scale drought events, providing a natural experiment to evaluate model skill as a function of drought and seasonality. We evaluate models' ability to simulate the seasonal cycle of CO2 exchange using multiple model skill metrics and analyze links between model characteristics, site history, and model skill. Overall model performance was poor; the difference between observations and simulations was similar to 10 times observational uncertainty, with forested ecosystems better predicted than nonforested. Model-data agreement was highest in summer and in temperate evergreen forests. In contrast, model performance declined in spring and fall, especially in ecosystems with large deciduous components, and in dry periods during the growing season. Models used across multiple biomes and sites, the mean model ensemble, and a model using assimilated parameter values showed high consistency with observations. Models with the highest skill across all biomes all used prescribed canopy phenology, calculated NEE as the difference between GPP and ecosystem respiration, and did not use a daily time step.
C1 [Schwalm, Christopher R.; Williams, Christopher A.] Clark Univ, Grad Sch Geog, Worcester, MA 01610 USA.
   [Schaefer, Kevin] Univ Colorado, Natl Snow & Ice Data Ctr, Boulder, CO 80309 USA.
   [Anderson, Ryan] Univ Montana, Numer Terradynam Simulat Grp, Missoula, MT 59812 USA.
   [Arain, M. Altaf] McMaster Univ, Sch Geog & Earth Sci, Hamilton, ON L8S 4K1, Canada.
   [Baker, Ian; Lokupitiya, Erandathie] Colorado State Univ, Dept Atmospher Sci, Ft Collins, CO 80523 USA.
   [Barr, Alan] Atmospher Sci & Technol Directorate, Div Climate Res, Saskatoon, SK S7N 3H5, Canada.
   [Black, T. Andrew] Univ British Columbia, Fac Land & Food Syst, Vancouver, BC V6T 1Z4, Canada.
   [Chen, Guangsheng; Tian, Hanqin] Auburn Univ, Sch Forestry & Wildlife Sci, Auburn, AL 36849 USA.
   [Chen, Jing Ming; Sprintsin, Michael] Univ Toronto, Dept Geog, Toronto, ON M5S 3G3, Canada.
   [Chen, Jing Ming; Sprintsin, Michael] Univ Toronto, Program Planning, Toronto, ON M5S 3G3, Canada.
   [Ciais, Philippe; Li, Longhui] CE Orme Merisiers, Lab Sci Climat & Environn, F-91191 Gif Sur Yvette, France.
   [Davis, Kenneth J.] Penn State Univ, Dept Meteorol, University Pk, PA 16802 USA.
   [Desai, Ankur] Univ Wisconsin, Ctr Climat Res, Madison, WI 53706 USA.
   [Dietze, Michael] Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA.
   [Dragoni, Danilo] Indiana Univ, Dept Geog, Bloomington, IN 47405 USA.
   [Fischer, Marc L.] Lawrence Berkeley Natl Lab, Dept Atmospher Sci, Berkeley, CA 94720 USA.
   [Flanagan, Lawrence B.] Univ Lethbridge, Dept Biol Sci, Lethbridge, AB T1K 3M4, Canada.
   [Grant, Robert] Univ Alberta, Dept Renewable Resources, Edmonton, AB T6G 2E3, Canada.
   [Gu, Lianhong; Riciutto, Dan M.] Oak Ridge Natl Lab, Div Environm Sci, Oak Ridge, TN 37831 USA.
   [Hollinger, David] USDA Forest Serv, No Res Stn, Durham, NH 03824 USA.
   [Izaurralde, R. Cesar] Univ Maryland, College Pk, MD 20740 USA.
   [Izaurralde, R. Cesar] Joint Global Change Res Inst, Pacific NW Natl Lab, College Pk, MD 20740 USA.
   [Kucharik, Chris] Univ Wisconsin, Ctr Sustainabil & Global Environm, Nelson Inst, Madison, WI 53706 USA.
   [Kucharik, Chris] Univ Wisconsin, Dept Agron, Madison, WI 53706 USA.
   [Lafleur, Peter] Trent Univ, Dept Geog, Peterborough, ON K9J 7B8, Canada.
   [Law, Beverly E.] Oregon State Univ, Coll Forestry, Corvallis, OR 97331 USA.
   [Li, Zhengpeng] ASRC Res & Technol Solut, Sioux Falls, SD 57198 USA.
   [Liu, Shuguang] Earth Resources Observat & Sci, Sioux Falls, SD 57198 USA.
   [Luo, Yiqi] Univ Oklahoma, Dept Bot & Microbiol, Norman, OK 73019 USA.
   [Ma, Siyan] Univ Calif Berkeley, Dept Environm Sci Policy & Management, Berkeley, CA 94720 USA.
   [Ma, Siyan] Univ Calif Berkeley, Berkeley Atmospher Sci Ctr, Berkeley, CA 94720 USA.
   [Margolis, Hank] Univ Laval, Fac Foresterie Geog & Geomat, Ctr Etud Foret, Quebec City, PQ G1V 0A6, Canada.
   [Matamala, Roser] Argonne Natl Lab, Biosci Div, Argonne, IL 60439 USA.
   [McCaughey, Harry] Queens Univ, Dept Geog, Kingston, ON K7L 3N6, Canada.
   [Monson, Russell K.] Univ Colorado, Dept Ecol & Evolut Biol, Boulder, CO 80309 USA.
   [Oechel, Walter C.] San Diego State Univ, Dept Biol, San Diego, CA 92182 USA.
   [Peng, Changhui; Sun, Jianfeng] Univ Quebec, Dept Biol Sci, Montreal, PQ H3C 3P8, Canada.
   [Poulter, Benjamin] Swiss Fed Res Inst WSL, CH-8903 Birmensdorf, Switzerland.
   [Price, David T.] No Forestry Ctr, Canadian Forest Serv, Edmonton, AB T6H 3S5, Canada.
   [Riley, William] Lawrence Berkeley Natl Lab, Div Earth Sci, Berkeley, CA 94720 USA.
   [Sahoo, Alok Kumar] Princeton Univ, Dept Civil & Environm Engn, Princeton, NJ 08544 USA.
   [Tonitto, Christina] Cornell Univ, Dept Ecol & Evolut Biol, Ithaca, NY 14853 USA.
   [Verbeeck, Hans] Univ Ghent, Plant Ecol Lab, B-9000 Ghent, Belgium.
   [Verma, Shashi B.] Univ Nebraska, Sch Nat Resources, Lincoln, NE 68583 USA.
RP Schwalm, CR (reprint author), Clark Univ, Grad Sch Geog, Worcester, MA 01610 USA.
EM cschwalm@clarku.edu; cwilliams@clarku.edu; kevin.schaefer@nsidc.org;
   ryan.anderson@ntsg.umt.edu; arainm@mcmaster.ca;
   baker@atmos.colostate.edu; alan.barr@ec.gc.ca; andrew.black@ubc.ca;
   chengu1@auburn.edu; chenj@geog.utoronto.ca; philippe.ciais@cea.fr;
   davis@meteo.psu.edu; desai@aos.wisc.edu; mdietze@life.uiuc.edu;
   ddragoni@indiana.edu; mlfischer@lbl.gov; larry.flanagan@uleth.ca;
   robert.grant@afhe.ualberta.ca; lianhong-gu@ornl.gov;
   davidh@hypatia.unh.edu; cesar.izaurralde@pnl.gov; kucharik@wisc.edu;
   plafleur@trentu.ca; bev.law@oregonstate.edu; longhui.li@lsce.ipsl.fr;
   zli@usgs.gov; sliu@usgs.gov; erandi@atmos.colostate.edu; yluo@ou.edu;
   sma@berkeley.edu; hank.margolis@sbf.ulaval.ca; matamala@anl.gov;
   mccaughe@post.queensu.ca; russell.monson@colorado.edu;
   oechel@sunstroke.sdsu.edu; peng.changhui@uqam.ca;
   benjamin.poulter@wsl.ch; dprice@nrcan.gc.ca; ricciutodm@ornl.gov;
   wjriley@lbl.gov; sahoo@princeton.edu; misprin@gmail.com;
   jianfeng_sun@yahoo.ca; tianhan@auburn.edu; ctonitto@cornell.edu;
   hans.verbeeck@ugent.be; sverma1@unl.edu
RI Gu, Lianhong/H-8241-2014; Law, Beverly/G-3882-2010; Verbeeck,
   Hans/A-2106-2009; Barr, Alan/H-9939-2014; Riley, William/D-3345-2015;
   Ricciuto, Daniel/I-3659-2016; Dietze, Michael/A-5834-2009; Izaurralde,
   Roberto/E-5826-2012; Tian, Hanqin/A-6484-2012; Hollinger,
   David/G-7185-2012; Peng, Changhui/G-8248-2012; Flanagan,
   Lawrence/B-1307-2013; Li, Longhui/C-7214-2013; Oechel,
   Walter/F-9361-2010; Desai, Ankur/A-5899-2008
OI Gu, Lianhong/0000-0001-5756-8738; Law, Beverly/0000-0002-1605-1203;
   Arain, M. Altaf/0000-0002-1433-5173; Kucharik,
   Christopher/0000-0002-0400-758X; Poulter, Benjamin/0000-0002-9493-8600;
   Verbeeck, Hans/0000-0003-1490-0168; Riley, William/0000-0002-4615-2304;
   Ricciuto, Daniel/0000-0002-3668-3021; Dietze,
   Michael/0000-0002-2324-2518; Tian, Hanqin/0000-0002-1806-4091; Flanagan,
   Lawrence/0000-0003-1748-0306; Oechel, Walter/0000-0002-3504-026X; Desai,
   Ankur/0000-0002-5226-6041
FU U.S. National Science Foundation [ATM-0910766, OPP-0352957]; U.S.
   National Aeronautics and Space Administration (NASA) [NNX06AE65G]; U.S.
   National Oceanic and Atmospheric Administration (NOAA) [NA07OAR4310115]
FX C.R.S., C.A.W., and K.S. were supported by the U.S. National Science
   Foundation grant ATM-0910766. We would like to thank the North American
   Carbon Program Site-Level Interim Synthesis team, the Modeling and
   Synthesis Thematic Data Center, and the Oak Ridge National Laboratory
   Distributed Active Archive Center for collecting, organizing, and
   distributing the model output and flux observations required for this
   analysis. This study was in part supported by the U.S. National
   Aeronautics and Space Administration (NASA) grant NNX06AE65G, the U.S.
   National Oceanic and Atmospheric Administration (NOAA) grant
   NA07OAR4310115, and the U.S. National Science Foundation (NSF) grant
   OPP-0352957 to the University of Colorado at Boulder.
NR 108
TC 141
Z9 141
U1 5
U2 111
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-8953
J9 J GEOPHYS RES-BIOGEO
JI J. Geophys. Res.-Biogeosci.
PD DEC 9
PY 2010
VL 115
AR G00H05
DI 10.1029/2009JG001229
PG 22
WC Environmental Sciences; Geosciences, Multidisciplinary
SC Environmental Sciences & Ecology; Geology
GA 693XI
UT WOS:000285258300001
ER

PT J
AU Chen, ST
   Raugei, S
   Rousseau, R
   Dupuis, M
   Bullock, RM
AF Chen, Shentan
   Raugei, Simone
   Rousseau, Roger
   Dupuis, Michel
   Bullock, R. Morris
TI Homogeneous Ni Catalysts for H-2 Oxidation and Production: An Assessment
   of Theoretical Methods, from Density Functional Theory to Post
   Hartree-Fock Correlated Wave-Function Theory
SO JOURNAL OF PHYSICAL CHEMISTRY A
LA English
DT Article
ID GAUSSIAN-BASIS SETS; TRANSITION-METAL HYDRIDES; AB-INITIO CALCULATIONS;
   FE-ONLY HYDROGENASE; ACTIVE-SITE; MOLECULAR CALCULATIONS; COMPUTATIONAL
   CHEMISTRY; THERMOCHEMICAL KINETICS; ANGSTROM RESOLUTION;
   CRYSTAL-STRUCTURE
AB A systematic assessment of theoretical methods applicable to the accurate characterization of catalytic cycles of homogeneous catalysts for H-2 oxidation and evolution is reported. The key elementary steps involve heterolytic cleavage of the H-H bond and formation/cleavage of Ni-H and N-H bonds. In the context of density functional theory (DFT), we investigated the use of functionals in the generalized gradient approximation (GGA) as well as hybrid functionals. We compared the results with wave-function theories based on perturbation theory (MP2 and MP4) and on coupled-cluster expansions [CCD, CCSD, and CCSD(T)]. Our findings indicate that DFT results based on Perdew correlation functionals are in semiquantitative agreement with the CCSD(T) results, with deviations of only a few kilocalories/mole. On the other hand, the B3LYP functional is not even in qualitative agreement with CCSD(T). Surprisingly, the MP2 results are found to be extremely poor, in particular for the diproton Ni(0) and dihydride Ni(IV) species on the reaction potential energy surface. The Hartree-Fock reference wave function in MP2 theory gives a poor reference state description for these states that are electron rich on Ni, giving rise to erroneous MP2 energies. We present a detailed potential-energy diagram for the oxidation of H-2 by these catalysts after accounting for the effects of solvation, as modeled by a polarizable continuum, and of free energy estimated at the harmonic level of theory.
C1 [Chen, Shentan; Raugei, Simone; Rousseau, Roger; Dupuis, Michel; Bullock, R. Morris] Pacific NW Natl Lab, Ctr Mol Electrocatalysis, Chem & Mat Sci Div, Richland, WA 99352 USA.
RP Dupuis, M (reprint author), Pacific NW Natl Lab, Ctr Mol Electrocatalysis, Chem & Mat Sci Div, Richland, WA 99352 USA.
RI chen, shentan/H-4924-2011; Rousseau, Roger/C-3703-2014; Bullock, R.
   Morris/L-6802-2016
OI Bullock, R. Morris/0000-0001-6306-4851
FU U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences; U.S. Department of Energy by Battelle [DE-AC06-76RLO 1830];
   Department of Energy's Office of Biological and Environmental Research
   located at Pacific Northwest National Laboratory; National Energy
   Research Scientific Computing Center (NERSC) at Lawrence Berkeley
   National Laboratory
FX We thank Dan DuBois, Jenny Yang, Ping Yang, Niri Govind, Karol Kowalski,
   Piotr Pecuch, and Vassiliki-Alexandra Glezakou for useful discussions.
   This research was carried out in the Center for Molecular
   Electrocatalysis, an Energy Frontier Resea Office of Basic Energy
   Sciences. Pacific Northwest National Laboratory is operated for the U.S.
   Department of Energy by Battelle urch Center funded by the U.S.
   Department of Energy, Office of Science,nder Contract No. DE-AC06-76RLO
   1830. Computational resources were provided at W. R. Wiley Environmental
   Molecular Science Laboratory (EMSL), a national scientific user facility
   sponsored by the Department of Energy's Office of Biological and
   Environmental Research located at Pacific Northwest National Laboratory
   and the National Energy Research Scientific Computing Center (NERSC) at
   Lawrence Berkeley National Laboratory.
NR 60
TC 37
Z9 37
U1 3
U2 41
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1089-5639
J9 J PHYS CHEM A
JI J. Phys. Chem. A
PD DEC 9
PY 2010
VL 114
IS 48
BP 12716
EP 12724
DI 10.1021/jp106800n
PG 9
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 686YP
UT WOS:000284738500020
PM 21070021
ER

PT J
AU Ghosh, D
   Kosenkov, D
   Vanovschi, V
   Williams, CF
   Herbert, JM
   Gordon, MS
   Schmidt, MW
   Slipchenko, LV
   Krylov, AI
AF Ghosh, Debashree
   Kosenkov, Dmytro
   Vanovschi, Vitalii
   Williams, Christopher F.
   Herbert, John M.
   Gordon, Mark S.
   Schmidt, Michael W.
   Slipchenko, Lyudmila V.
   Krylov, Anna I.
TI Noncovalent Interactions in Extended Systems Described by the Effective
   Fragment Potential Method: Theory and Application to Nucleobase
   Oligomers
SO JOURNAL OF PHYSICAL CHEMISTRY A
LA English
DT Article
ID PI-PI-INTERACTIONS; DENSITY-FUNCTIONAL THEORY; QUANTUM-MECHANICAL
   CALCULATIONS; INTERMOLECULAR PAULI REPULSION; DISTRIBUTED MULTIPOLE
   ANALYSIS; MOLECULAR-ORBITAL METHOD; CLOSED-SHELL MOLECULES; BENZENE
   DIMER; AB-INITIO; ELECTRONIC-STRUCTURE
AB The implementation of the effective fragment potential (EFP) method within the Q-CHEM electronic structure package is presented. The EFP method is used to study noncovalent pi-pi and hydrogen-bonding interactions in DNA strands. Since EFP is a computationally inexpensive alternative to high-level ab initio calculations, it is possible to go beyond the dimers of nucleic acid bases and to investigate the asymptotic behavior of different components of the total interaction energy. The calculations demonstrated that the dispersion energy is a leading component in pi-stacked oligomers of all sizes. Exchange-repulsion energy also plays an important role. The contribution of polarization is small in these systems, whereas the magnitude of electrostatics varies. Pairwise fragment interactions (i.e., the sum of dimer binding energies) were found to be a good approximation for the oligomer energy.
C1 [Kosenkov, Dmytro; Slipchenko, Lyudmila V.] Purdue Univ, Dept Chem, W Lafayette, IN 47907 USA.
   [Ghosh, Debashree; Vanovschi, Vitalii; Krylov, Anna I.] Univ So Calif, Dept Chem, Los Angeles, CA 90089 USA.
   [Williams, Christopher F.; Herbert, John M.] Ohio State Univ, Dept Chem, Columbus, OH 43210 USA.
   [Gordon, Mark S.; Schmidt, Michael W.] Iowa State Univ, Dept Chem, Ames, IA 50011 USA.
   [Gordon, Mark S.; Schmidt, Michael W.] Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
RP Slipchenko, LV (reprint author), Purdue Univ, Dept Chem, W Lafayette, IN 47907 USA.
EM lslipchenko@purdue.edu; krylov@usc.edu
RI Herbert, John/A-9573-2008; Slipchenko, Lyudmila/G-5182-2012; 
OI Herbert, John/0000-0002-1663-2278; Ghosh, Debashree/0000-0003-0726-7878
FU NIH; Basic Energy Science Division of the Department of Energy; NSF
   [CHE-0955419, CHE-0748448]; Q-CHEM, Inc.
FX This work was supported by an NIH-SBIR grant with Q-CHEM, Inc. (A. I. K.
   and L. V. S.) and by grants from the Basic Energy Science Division of
   the Department of Energy to the Ames Laboratory Chemical Physics Program
   (M. S. G.). L.V.S. and J.M.H. acknowledge additional support from the
   NSF-CAREER grants (CHE-0955419 and CHE-0748448, respectively). We thank
   Dr. Yihan Shao and Dr. Jing Kong for their generous help with the
   implementation. We are also grateful to Prof. Alexander V. Nemukhin and
   Dr. Bella Grigorenko for valuable discussions. In addition, we
   acknowledge contributions of Ilya Kaliman.
NR 115
TC 46
Z9 46
U1 1
U2 21
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1089-5639
J9 J PHYS CHEM A
JI J. Phys. Chem. A
PD DEC 9
PY 2010
VL 114
IS 48
BP 12739
EP 12754
DI 10.1021/jp107557p
PG 16
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 686YP
UT WOS:000284738500023
PM 21067134
ER

PT J
AU Chang, TM
   Dang, LX
   Devanathan, R
   Dupuis, M
AF Chang, T. M.
   Dang, Liem X.
   Devanathan, R.
   Dupuis, M.
TI Structure and Dynamics of N,N-Diethyl-N-methylammonium Triflate Ionic
   Liquid, Neat and with Water, from Molecular Dynamics Simulations
SO JOURNAL OF PHYSICAL CHEMISTRY A
LA English
DT Article
ID FUEL-CELL ELECTROLYTES; REFINED FORCE-FIELD; PARTICLE MESH EWALD;
   1-ALKYL-3-METHYLIMIDAZOLIUM CATIONS; ATOMISTIC SIMULATION;
   COMPUTER-SIMULATION; PHYSICAL-CHEMISTRY; PROTON CONDUCTORS;
   HYDROGEN-BONDS; TEMPERATURE
AB We investigated by means of molecular dynamics simulations the properties (structure, thermodynamics, ion transport, and dynamics) of the protic ionic liquid N,N-diethyl-N-methylammonium triflate (dema:Tfl) and of selected aqueous mixtures of dema:Tfl. This ionic liquid, a good candidate for a water-free proton exchange membrane, is shown to exhibit high ion mobility and conductivity. The radial distribution functions reveal a significant long-range structural correlation. The ammonium cations [dema](+) are found to diffuse slightly faster than the triflate anions [Tfl](-), and both types of ions exhibit enhanced mobility at higher temperatures, leading to higher ionic conductivity. Analysis of the dynamics of ion pairing clearly points to the existence of long-lived contact ion pairs. We also examined the effects of water through characterization of properties of dema:Tfl-water mixtures. Water molecules replace counterions in the coordination shell of both ions, thus weakening their association. As water concentration increases, water molecules start to connect with each other and then form a large network that percolates through the system. Water influences ion dynamics in the mixtures. As the concentration of water increases, both translational and rotational motions of [dema](+) and [Tfl](-) are significantly enhanced. As a result, higher vehicular ionic conductivity is observed with increased hydration level.
C1 [Chang, T. M.; Dang, Liem X.; Devanathan, R.; Dupuis, M.] Pacific NW Natl Lab, Div Chem & Mat Sci, Richland, WA 99352 USA.
   [Chang, T. M.] Univ Wisconsin Parkside, Dept Chem, Kenosha, WI 53141 USA.
RP Dupuis, M (reprint author), Pacific NW Natl Lab, Div Chem & Mat Sci, Richland, WA 99352 USA.
EM michel.dupuis@pnl.gov
RI Devanathan, Ram/C-7247-2008
OI Devanathan, Ram/0000-0001-8125-4237
FU U.S. Department of Energy's (DOE) Office of Basic Energy Sciences,
   Division of Chemical Sciences, Geosciences, and Biosciences
   [DE-AC05-76RL01830]; DOE's Office of Biological and Environmental
   Research located at Pacific Northwest National Laboratory (PNNL); Office
   of Science of DOE [DE-AC02-05CH1123]
FX This work was supported by the U.S. Department of Energy's (DOE) Office
   of Basic Energy Sciences, Division of Chemical Sciences, Geosciences,
   and Biosciences under Contract DE-AC05-76RL01830. It was performed in
   part using the Molecular Science Computing Facility (MSCF) in the EMSL,
   a national scientific user facility sponsored by DOE's Office of
   Biological and Environmental Research located at Pacific Northwest
   National Laboratory (PNNL). PNNL is operated by Battelle for DOE. This
   work benefited also from resources of the National Energy Research
   Scientific Computing Center, which is supported by the Office of Science
   of DOE under Contract No. DE-AC02-05CH1123.
NR 103
TC 32
Z9 32
U1 1
U2 50
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1089-5639
J9 J PHYS CHEM A
JI J. Phys. Chem. A
PD DEC 9
PY 2010
VL 114
IS 48
BP 12764
EP 12774
DI 10.1021/jp108189z
PG 11
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 686YP
UT WOS:000284738500026
PM 21067238
ER

PT J
AU Lockard, JV
   Rachford, AA
   Smolentsev, G
   Stickrath, AB
   Wang, XH
   Zhang, XY
   Atenkoffer, K
   Jennings, G
   Soldatov, A
   Rheingold, AL
   Castellano, FN
   Chen, LX
AF Lockard, Jenny V.
   Rachford, Aaron A.
   Smolentsev, Grigory
   Stickrath, Andrew B.
   Wang, Xianghuai
   Zhang, Xiaoyi
   Atenkoffer, Klaus
   Jennings, Guy
   Soldatov, Alexander
   Rheingold, Arnold L.
   Castellano, Felix N.
   Chen, Lin X.
TI Triplet Excited State Distortions in a Pyrazolate Bridged Platinum Dimer
   Measured by X-ray Transient Absorption Spectroscopy
SO JOURNAL OF PHYSICAL CHEMISTRY A
LA English
DT Article
ID FINE-STRUCTURE TECHNIQUE; ELECTRON-TRANSFER; LOCAL-STRUCTURE; COMPLEXES;
   DYNAMICS; XANES; IRIDIUM(I); SPECTRA; PHOTOPHYSICS; DERIVATIVES
AB The excited-state structure of a dinuclear platinum(II) complex with tert-butyl substituted pyrazolate bridging units, [Pt(ppy)(mu-'Bu(2)pz)](2) (ppy = 2-phenylpyridine; 'Bu(2)pz = 3,5-di-tert-butylpyrazolate) is studied by X-ray transient absorption (XTA) spectroscopy to reveal the transient electronic and nuclear geometry. DFT calculations predict that the lowest energy triplet excited state, assigned to a metal metal-to-ligand charge transfer (MMLCT) transition, has a contraction in the Pt Pt distance. The Pt-Pt bond length and other structural parameters extracted from fitting the experimental XTA difference spectra from full multiple scattering (FMS) and multidimensional interpolation calculations indicates a metal-metal distance decrease by approximately 0.2 angstrom in the triplet excited state. The advantages and challenges of this approach in resolving dynamic transient structures of nonbonding or weak-bonding dinuclear metal complexes in solution are discussed.
C1 [Rachford, Aaron A.; Wang, Xianghuai; Castellano, Felix N.] Bowling Green State Univ, Dept Chem, Bowling Green, OH 43403 USA.
   [Rachford, Aaron A.; Wang, Xianghuai; Castellano, Felix N.] Bowling Green State Univ, Ctr Photochem Sci, Bowling Green, OH 43403 USA.
   [Lockard, Jenny V.; Stickrath, Andrew B.; Chen, Lin X.] Argonne Natl Lab, Chem Sci & Engn Div, Argonne, IL 60439 USA.
   [Lockard, Jenny V.; Stickrath, Andrew B.; Zhang, Xiaoyi; Atenkoffer, Klaus; Jennings, Guy; Chen, Lin X.] Argonne Natl Lab, Xray Sci Div, Argonne, IL 60439 USA.
   [Smolentsev, Grigory; Soldatov, Alexander] So Fed Univ, Res Ctr Nanoscale Struct Matter, Rostov Na Donu 344090, Russia.
   [Smolentsev, Grigory] Lund Univ, Dept Chem Phys, SE-22100 Lund, Sweden.
   [Rheingold, Arnold L.] Univ Calif San Diego, Dept Chem, La Jolla, CA 92093 USA.
   [Chen, Lin X.] Northwestern Univ, Dept Chem, Evanston, IL 60208 USA.
RP Castellano, FN (reprint author), Bowling Green State Univ, Dept Chem, Bowling Green, OH 43403 USA.
EM castell@bgsu.edu; lchen@anl.gov
RI Wang, Xianghuai/A-2070-2010; Soldatov, Alexander/E-9323-2012; 
OI Soldatov, Alexander/0000-0001-8411-0546; Castellano,
   Felix/0000-0001-7546-8618
FU U.S. Department of Energy, Office of Basic Energy Sciences, Division of
   Chemical Sciences, Geosciences, and Biosciences [DE-AC02-06CH11357];
   U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences [DE-AC02-06CH11357]; National Science Foundation [CHE-0719050];
   Air Force Office of Scientific Research [FA9550-05-1-0276]; ERC [VISCHEM
   226136]
FX Work at ANL was supported by the U.S. Department of Energy, Office of
   Basic Energy Sciences, Division of Chemical Sciences, Geosciences, and
   Biosciences, under Contract DE-AC02-06CH11357. Use of the Advanced
   Photon Source was supported by the U.S. Department of Energy, Office of
   Science, Office of Basic Energy Sciences, under Contract No.
   DE-AC02-06CH11357. The BGSU portion of the work including the synthesis
   and DFT calculation was supported by the National Science Foundation
   (CHE-0719050) and the Air Force Office of Scientific Research
   (FA9550-05-1-0276). Work of G.S. including the XANES calculations was
   partially supported by ERC Advanced investigator grant to V. Sundstrom:
   VISCHEM 226136.
NR 52
TC 26
Z9 26
U1 4
U2 33
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1089-5639
J9 J PHYS CHEM A
JI J. Phys. Chem. A
PD DEC 9
PY 2010
VL 114
IS 48
BP 12780
EP 12787
DI 10.1021/jp1088299
PG 8
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 686YP
UT WOS:000284738500028
PM 21067164
ER

PT J
AU Vugmeyster, L
   Ostrovsky, D
   Moses, M
   Ford, JJ
   Lipton, AS
   Hoatson, GL
   Vold, RL
AF Vugmeyster, Liliya
   Ostrovsky, Dmitry
   Moses, Mark
   Ford, Joseph J.
   Lipton, Andrew S.
   Hoatson, Gina L.
   Vold, Robert L.
TI Comparative Dynamics of Leucine Methyl Groups in FMOC-Leucine and in a
   Protein Hydrophobic Core Probed by Solid-State Deuteron Nuclear Magnetic
   Resonance over 7-324 K Temperature Range
SO JOURNAL OF PHYSICAL CHEMISTRY B
LA English
DT Article
ID SPIN-LATTICE-RELAXATION; COMPOSITE EXCITATION SEQUENCES; SIDE-CHAIN
   DYNAMICS; NMR-SPECTROSCOPY; H-2 NMR; AMINO-ACIDS; BROAD-BAND;
   TRANSITION; REORIENTATION; MEMBRANES
AB Quantitative dynamics of methyl groups in 9-fluorenylmethyloxycarbonyl-leucine (FMOC-leu) have been analyzed and compared with earlier studies of methyl dynamics in chicken villin headpiece subdomain protein (HP36) labeled at L69 a key hydrophobic col e position A combination of deuteron solid-state nuclear magnetic resonance experiments over the temperature range of 7-324 K and computational modeling indicated that while the two compounds show the same modes of motions there are marked differences in the best-fit parameters of these motions One of the main results is that the crossover observed in the dynamics of the methyl groups in the HP36 sample at 170 K is absent in FMOC-leu A second crossover at around 95-88 K is present in both samples The differences in the behavior of the two compounds suggest that some of the features of methyl dynamics reflect the complexity of the protein hydrophobic core and are not determined solely by local interactions
C1 [Vugmeyster, Liliya; Ostrovsky, Dmitry; Moses, Mark] Univ Alaska Anchorage, Anchorage, AK 99508 USA.
   [Ford, Joseph J.; Lipton, Andrew S.] Pacific NW Natl Lab, Richland, WA 99354 USA.
   [Hoatson, Gina L.; Vold, Robert L.] Coll William & Mary, Williamsburg, VA 23187 USA.
RP Vugmeyster, L (reprint author), Univ Alaska Anchorage, Anchorage, AK 99508 USA.
FU NSF [CHE-0713819]; University of Alaska [04110-11970, 11470];
   Environment and Natural Resources Institute University of Alaska at
   Anchorage; Research Corporation for Science Advancement
FX L V acknowledges Cottrell College Science Award from Research
   Corporation for Science Advancement Research Opportunity Award from
   NSF-CHE-0713819 Grant to R L V, University of Alaska funds 104110-11970
   and 11470 and Environment and Natural Resources Institute University of
   Alaska at Anchorage Part of this research was performed using EMSL a
   national scientific user facility sponsored by the Department of
   Energy's Office of Biological and Environmental Research located at
   Pacific Northwest National Laboratory NMR data at 17 6 T were collected
   at the College of William and Mary NMR laboratory, which is supported by
   NSF Grant No CHE-0713819 to the College of William and Mary on behalf of
   R L V and G L H We are grateful to Jesse Sears and Sarah Burton for
   technical assistance
NR 44
TC 2
Z9 2
U1 0
U2 11
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1520-6106
J9 J PHYS CHEM B
JI J. Phys. Chem. B
PD DEC 9
PY 2010
VL 114
IS 48
BP 15799
EP 15807
DI 10.1021/jp1082467
PG 9
WC Chemistry, Physical
SC Chemistry
GA 686YR
UT WOS:000284738800009
PM 21077644
ER

PT J
AU Badaeva, E
   Harpham, MR
   Guda, R
   Suzer, O
   Ma, CQ
   Bauerle, P
   Goodson, T
   Tretiak, S
AF Badaeva, Ekaterina
   Harpham, Michael R.
   Guda, Ramakrishna
   Suzer, Ozgun
   Ma, Chang-Qi
   Bauerle, Peter
   Goodson, Theodore, III
   Tretiak, Sergei
TI Excited-State Structure of Oligothiophene Dendrimers Computational and
   Experimental Study
SO JOURNAL OF PHYSICAL CHEMISTRY B
LA English
DT Article
ID DENSITY-FUNCTIONAL THEORY; TIME-RESOLVED SPECTROSCOPY; ENHANCED 2-PHOTON
   ABSORPTION; NONLINEAR-OPTICAL PROPERTIES; ENERGY-TRANSFER; DENDRITIC
   MACROMOLECULES; ANTENNA SUPERMOLECULES; OPTOELECTRONIC DEVICES;
   ALPHA-OLIGOTHIOPHENES; BRANCHED CHROMOPHORES
AB The nature of one and two-photon absorption enhancement in a series of oligothiophene dendrimers recently proposed for applications in entangled photon sensors and solar cells has been analyzed using both theory (time dependent density functional theory calculations) and experiment (fluorescence upconversion measurements) The linear absorption spectra exhibit a red shift of the absorption maxima and broadening as a function of dendrimer generations The two-photon absorption cross sections increase sharply with the number of thiophene units in the dendrimer The cooperative enhancement in absorption two-photon cross sections is explained by (i) an Increase in the excited-state density for larger molecules and (ii) delocalization of the low-lying excited states over extended thiophene chains Fluorescence anisotropy measurements and examination of the calculated excited-state properties reveal that this delocalization is accompanied by a size-dependent decrease in excited-state symmetries A substantial red shift of the emission maxima for larger dendrimers is explained through the vibronic planarization of the longest linear a-thiophene chain for the emitting excited state For higher generations, the fluorescence quantum yield decreases due to increased nonradiative decay efficiency (e g intersystem crossing) The detailed information about the dendrimer 3D structure and excitations provides guidance for further optimizations of dendrite structures for nonlinear optical and opto-electronic applications
C1 [Harpham, Michael R.; Guda, Ramakrishna; Suzer, Ozgun; Goodson, Theodore, III] Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USA.
   [Badaeva, Ekaterina] Univ Washington, Dept Chem, Seattle, WA 98195 USA.
   [Goodson, Theodore, III] Univ Michigan, Appl Phys Program, Ann Arbor, MI 48109 USA.
   [Ma, Chang-Qi; Bauerle, Peter] Univ Ulm, Inst Organ Chem & Adv Mat 2, D-89081 Ulm, Germany.
   [Badaeva, Ekaterina; Tretiak, Sergei] Los Alamos Natl Lab, Div Theoret, Ctr Nonlinear Studies CNLS, Los Alamos, NM 87545 USA.
   [Badaeva, Ekaterina; Tretiak, Sergei] Los Alamos Natl Lab, Ctr Integrated Nanotechnol CINT, Los Alamos, NM 87545 USA.
RP Goodson, T (reprint author), Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USA.
RI Ma, Chang-Qi/E-4796-2013; Suzer, Ozgun/H-5149-2013; Ramakrishna,
   Guda/G-5882-2011; Tretiak, Sergei/B-5556-2009; 
OI Suzer, Ozgun/0000-0003-1032-5899; Ramakrishna, Guda/0000-0002-5288-8780;
   Tretiak, Sergei/0000-0001-5547-3647; ma, chang qi/0000-0002-9293-5027
FU Department of Defense; National Science Foundation (TG polymers
   division); National Geospatial-Intelligence Agency (TG quantum science
   division); German Research Foundation [569]; U S Department of Energy
   [DE-AC52-06NA25396]; Center for Nonlinear Studies (CNLS) at LANL;
   University of Washington Center of Integrated Nanotechnologies; German
   Science Foundation (DFG) [SFB 569]
FX We gratefully acknowledge funding from the Department of Defense,
   National Science Foundation (TG polymers division), National
   Geospatial-Intelligence Agency (TG quantum science division) and the
   German Research Foundation in the frame of Collaborative Research Center
   569 This work was performed in part at the Center for Integrated
   Nanotechnologies a U S Department of Energy, Office of Basic Energy
   Sciences user facility Los Alamos National Laboratory (LANL) is operated
   by Los Alamos National Security LLC for the National Nuclear Security
   Administration of the U S Department of Energy under contract
   DE-AC52-06NA25396 We acknowledge support of Center for Nonlinear Studies
   (CNLS) at LANL E B is thanksful to the University of Washington Center
   of Integrated Nanotechnologies UIF fellowship We also would like to
   acknowledge funding of the German Science Foundation (DFG) in the frame
   of Collaborative Research Center SFB 569
NR 87
TC 26
Z9 26
U1 3
U2 55
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1520-6106
J9 J PHYS CHEM B
JI J. Phys. Chem. B
PD DEC 9
PY 2010
VL 114
IS 48
BP 15808
EP 15817
DI 10.1021/jp109624d
PG 10
WC Chemistry, Physical
SC Chemistry
GA 686YR
UT WOS:000284738800010
PM 21077602
ER

PT J
AU Kuciauskas, D
   Kiskis, J
   Caputo, GA
   Gulbinas, V
AF Kuciauskas, Darius
   Kiskis, Juris
   Caputo, Gregory A.
   Gulbinas, Vidmantas
TI Exciton Annihilation and Energy Transfer in Self-Assembled
   Peptide-Porphyrin Complexes Depends on Peptide Secondary Structure
SO JOURNAL OF PHYSICAL CHEMISTRY B
LA English
DT Article
ID AMPHIPHILIC PROTEIN MAQUETTES; WATER-SOLUBLE PORPHYRIN; DE-NOVO DESIGN;
   SELECTIVELY BINDS; SPECTROSCOPY; MIGRATION; FLUORESCENCE; MECHANISM;
   INSERTION; COFACTOR
AB We used picosecond transient absorption and fluorescence lifetime spectroscopy to study singlet exciton annihilation and depolarization in self-assembled aggregates of meso-tetra(4-sulfonatophenyl)porphine (TPPS4) and a synthetic 22-residue polypeptide The polypeptide was designed and previously shown to bind three TPPS4 monomers via electrostatic interactions between the sulfonate groups and canonic lysine residues Additionally the peptide induces formation of TPPS4 J-aggregates in acidic solutions when the peptide secondary structure is disordered In neutral solutions, the peptide adopts an alpha-helical secondary structure that can bind TPPS4 with high affinity but J-aggregate formation is inhibited Detailed analysis of excitation-power dependent transient absorption kinetics was used to obtain rate constants describing the energy transfer between TPPS4 molecules in an aggregate under acidic and neutral conditions Independently, such analysis was confirmed by picosecond fluorescence emission depolarization measurements We find that energy transfer between TPPS4 monomers in a peptide TPPS4 complex is more than 30 times faster in acidic aqueous solution than in neutral solutions (9 vs 279 ps) This result was attributed to a conformational change of the peptide backbone from disordered at low pH to alpha-helical at neutral pH and suggests a new approach to control intermolecular energy transfer with possible applications in fluorescent sensors or biomimetic light harvesting antennas
C1 [Kuciauskas, Darius; Caputo, Gregory A.] Rowan Univ, Dept Chem & Biochem, Glassboro, NJ 08108 USA.
   [Kiskis, Juris; Gulbinas, Vidmantas] Ctr Phys & Technol Sci, Inst Phys, Vilnius, Lithuania.
RP Kuciauskas, D (reprint author), Natl Renewable Energy Lab, 1617 Cole Blvd, Golden, CO 80401 USA.
OI Caputo, Gregory/0000-0002-4510-2815
FU American Chemical Society; Lithuanian Science Council
FX Acknowledgment is made to the Donors of the American Chemical Society
   Petroleum Research Fund for partial support of this research This work
   was partly supported by the Lithuanian Science Council Student Research
   Fellowship Award to J K
NR 37
TC 11
Z9 11
U1 3
U2 38
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1520-6106
J9 J PHYS CHEM B
JI J. Phys. Chem. B
PD DEC 9
PY 2010
VL 114
IS 48
BP 16029
EP 16035
DI 10.1021/jp.108685n
PG 7
WC Chemistry, Physical
SC Chemistry
GA 686YR
UT WOS:000284738800036
PM 21069973
ER

PT J
AU Vura-Weis, J
   Newton, MD
   Wasielewski, MR
   Subotnik, JE
AF Vura-Weis, Josh
   Newton, Marshall D.
   Wasielewski, Michael R.
   Subotnik, Joseph E.
TI Characterizing the Locality of Diabatic States for Electronic Excitation
   Transfer By Decomposing the Diabatic Coupling
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID EXCITON RESONANCE INTERACTIONS; DENSITY-FUNCTIONAL THEORY;
   ENERGY-TRANSFER; AB-INITIO; CONFIGURATIONAL UNIFORMITY; BLOCK
   DIAGONALIZATION; MOLECULAR ORBITALS; RATE EXPRESSIONS; MATRIX-ELEMENTS;
   CHARGE-TRANSFER
AB A common strategy to calculate electronic coupling matrix elements for charge or energy transfer is to take the adiabatic states generated by electronic structure computations and rotate them to form localized diabatic states. In this paper, we show that, for intermolecular transfer of singlet electronic excitation, usually we cannot fully localize the electronic excitations in this way. Instead, we calculate putative initial and final states with small excitation tails caused by weak interactions with high energy excited states in the electronic manifold. These tails do not lead to substantial changes in the total diabatic coupling between states, but they do lead to a different partitioning of the total coupling between Coulomb (Forster), exchange (Dexter), and one-electron components. The tails may be reduced by using a multistate diabatic model or eliminated entirely by truncation (denoted as "chopping"). Without more information, we are unable to conclude with certainty whether the observed diabatic tails are a physical reality or a computational artifact. This research suggests that decomposition of the diabatic coupling between chromophores into Coulomb, exchange, and one-electron components may depend strongly on the number of states considered, and such results should be treated with caution.
C1 [Subotnik, Joseph E.] Univ Penn, Dept Chem, Philadelphia, PA 19104 USA.
   [Vura-Weis, Josh; Wasielewski, Michael R.] Northwestern Univ, Dept Chem, Evanston, IL 60208 USA.
   [Vura-Weis, Josh; Wasielewski, Michael R.] Northwestern Univ, Argonne NW Solar Energy Res ANSER Ctr, Evanston, IL 60208 USA.
   [Newton, Marshall D.] Brookhaven Natl Lab, Upton, NY 11973 USA.
RP Subotnik, JE (reprint author), Univ Penn, Dept Chem, Philadelphia, PA 19104 USA.
EM subotnik@sas.upenn.edu
FU U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences [DE-SC0001059]; Division of Chemical Sciences, Geosciences, and
   Biosciences, Office of Basic Energy Sciences of the U.S. Department of
   Energy [DE-AC02-98CH10886]; Chemistry division of the NSF; ONR;
   University of Pennsylvania
FX The authors thank Mark A. Ratner for many helpful discussions and his
   ongoing guidance and support. We also thank Alex Sodt and Yihan Shao for
   computational help. This work was supported as part of the ANSER Center,
   an Energy Frontier Research Center funded by the U.S. Department of
   Energy, Office of Science, Office of Basic Energy Sciences, under Award
   No. DE-SC0001059. The Division of Chemical Sciences, Geosciences, and
   Biosciences, Office of Basic Energy Sciences of the U.S. Department of
   Energy is gratefully acknowledged for funding the research carried out
   by M.D.N. through Grant DE-AC02-98CH10886. J.E.S. was supported by Prof.
   Ratner through grants from the Chemistry division of the NSF and ONR,
   and from start-up funds at the University of Pennsylvania.
NR 67
TC 25
Z9 25
U1 0
U2 23
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 9
PY 2010
VL 114
IS 48
BP 20449
EP 20460
DI 10.1021/jp104783r
PG 12
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 686YS
UT WOS:000284738900019
ER

PT J
AU Iddir, H
   Curtiss, LA
AF Iddir, H.
   Curtiss, L. A.
TI Li Ion Diffusion Mechanisms in Bulk Monoclinic Li2CO3 Crystals from
   Density Functional Studies
SO JOURNAL OF PHYSICAL CHEMISTRY C
LA English
DT Article
ID DOT-O INTERACTIONS; REDUCTION-MECHANISMS; ETHYLENE CARBONATE;
   SOLID-ELECTROLYTE; LITHIUM; BATTERIES; ASSOCIATIONS; CHALLENGES;
   PROPYLENE; INSIGHTS
AB Density functional studies of Li+ ion diffusion mechanisms in bulk monoclinic lithium carbonate Li2CO3 crystals are performed to identify the stable Li+ interstitial positions and migration barriers. The migration barrier for Li+ diffusion between the planes defined by Li2CO3 units along the open channels [010] is found to be very small at 0.28 eV, while a higher migration barrier of 0.60 eV was found for the diffusion across the planes. These results show that diffusion of Li+ in Li2CO3 is favorable along the [010] channels. The implications for Li+ ion transport in solid electrolyte interphases (SET) in Li ion batteries are discussed.
C1 [Iddir, H.; Curtiss, L. A.] Argonne Natl Lab, Div Mat Sci, Argonne, IL 60439 USA.
   [Curtiss, L. A.] Argonne Natl Lab, Ctr Nanoscale Mat, Argonne, IL 60439 USA.
RP Curtiss, LA (reprint author), Argonne Natl Lab, Div Mat Sci, 9700 S Cass Ave, Argonne, IL 60439 USA.
FU U.S. Department of Energy [DE-AC0206CH11357]; U.S. Department of Energy,
   Office of Science and Office of Basic Energy Sciences
FX This work was supported by the U.S. Department of Energy under Contract
   DE-AC0206CH11357. This material is based upon work supported as part of
   the Tailored Interfaces for Energy Storage, an Energy Frontier Research
   Center funded by the U.S. Department of Energy, Office of Science and
   Office of Basic Energy Sciences. We gratefully acknowledge grants of
   computer time from EMSL, a national scientific user facility located at
   Pacific Northwest National Laboratory, the ANL Laboratory Computing
   Resource Center (LCRC), and the ANL Center of Nanoscale Materials.
NR 35
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U1 1
U2 36
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1932-7447
J9 J PHYS CHEM C
JI J. Phys. Chem. C
PD DEC 9
PY 2010
VL 114
IS 48
BP 20903
EP 20906
DI 10.1021/jp1086569
PG 4
WC Chemistry, Physical; Nanoscience & Nanotechnology; Materials Science,
   Multidisciplinary
SC Chemistry; Science & Technology - Other Topics; Materials Science
GA 686YS
UT WOS:000284738900075
ER

PT J
AU Solenov, D
   Mozyrsky, D
AF Solenov, Dmitry
   Mozyrsky, Dmitry
TI Macroscopic two-state systems in trapped atomic condensates
SO PHYSICAL REVIEW A
LA English
DT Article
ID BOSE-EINSTEIN CONDENSATE; GASES
AB We consider a macroscopic two-state system based on persistent current states of a Bose-Einstein condensate (BEC) of interacting neutral atoms confined in a ring with a weak Josephson link. We demonstrate that macroscopic superpositions of different BEC flows are energetically favorable in this system. Moreover, a macroscopic two-state dynamics emerges in the low-energy limit. We also investigate fundamental limitations due to the noise inherent in the interacting BEC of Josephson-ring geometry. We show that the coherent macroscopic dynamics is readily measurable for an experimentally accessible range of parameters.
C1 [Solenov, Dmitry] Los Alamos Natl Lab, Theoret Div T4, Los Alamos, NM 87545 USA.
   Los Alamos Natl Lab, Ctr Nonlinear Studies CNLS, Los Alamos, NM 87545 USA.
RP Solenov, D (reprint author), Los Alamos Natl Lab, Theoret Div T4, Los Alamos, NM 87545 USA.
EM solenov@lanl.gov; mozyrsky@lanl.gov
RI Solenov, Dmitry/H-6250-2012; 
OI Mozyrsky, Dima/0000-0001-5305-4617
FU US DOE
FX We thank M. G. Boshier, A. J. Leggett, I. Martin, V. Privman, and E.
   Timmermans for valuable discussions and comments. The work is supported
   by the US DOE.
NR 19
TC 5
Z9 5
U1 0
U2 0
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1050-2947
J9 PHYS REV A
JI Phys. Rev. A
PD DEC 9
PY 2010
VL 82
IS 6
AR 061601
DI 10.1103/PhysRevA.82.061601
PG 4
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 713JL
UT WOS:000286734200001
ER

PT J
AU Duguet, T
   Unal, B
   Han, Y
   Evans, JW
   Ledieu, J
   Jenks, CJ
   Dubois, JM
   Fournee, V
   Thiel, PA
AF Duguet, T.
   Uenal, B.
   Han, Y.
   Evans, J. W.
   Ledieu, J.
   Jenks, C. J.
   Dubois, J. M.
   Fournee, V.
   Thiel, P. A.
TI Variation of growth morphology with chemical composition of terraces: Ag
   on a twofold surface of a decagonal Al-Cu-Co quasicrystal
SO PHYSICAL REVIEW B
LA English
DT Article
ID TEMPERATURE EPITAXIAL-GROWTH; BY-LAYER GROWTH; FILM GROWTH; ROUGHNESS;
   MONOLAYER; BEHAVIOR; TUNGSTEN; MODELS
AB Growth of Ag thin films on the twofold surface of a decagonal Al-Cu-Co quasicrystal is characterized by scanning tunneling microscopy, at different temperatures, and for coverages ranging from submonolayer to 11 monolayers. From prior work, three types of clean surface terraces are known to exist. By correlation with a bulk structural model, the major difference between them lies in their transition-metal (TM) content, two being aluminum-rich (0 and 15 at. % TM) and one being TM-rich (40-50 at. % TM). The present article focuses on understanding the difference between Ag film morphologies on these terminations, in terms of their chemical content. Growth is found to be smoother on the TM-rich terraces and rougher on the Al-rich ones. The first Ag atomic layer is even pseudomorphic on the TM-rich terraces. Roughness variation with temperature shows that the equilibrium morphology is two dimensional for TM-rich terraces and three dimensional for Al-rich terraces. The explanation of different growth modes in terms of different terrace compositions is supported by calculations of the adhesion energy of a Ag slab with Ag, Al, Cu, and Co slabs, using density-functional theory. For the Al-rich terraces, the roughness variation with temperature also indicates reentrant growth, i.e., anomalously smooth growth at low temperature due to kinetic effects.
C1 [Duguet, T.; Uenal, B.; Jenks, C. J.; Thiel, P. A.] Iowa State Univ, Ames Lab, US Dept Energy, Dept Chem, Ames, IA 50011 USA.
   [Duguet, T.; Uenal, B.; Jenks, C. J.; Thiel, P. A.] Iowa State Univ, Dept Mat Sci & Engn, Ames, IA 50011 USA.
   [Duguet, T.; Ledieu, J.; Dubois, J. M.; Fournee, V.] Nancy Univ UPV Metz, Ecole Mines Nancy, Inst Jean Lamour, CNRS,UMR 7198, F-54042 Nancy, France.
   [Han, Y.; Evans, J. W.] Iowa State Univ, Inst Phys Res & Technol, Dept Phys & Astron, Ames, IA 50011 USA.
   [Han, Y.; Evans, J. W.] Iowa State Univ, Dept Math, Ames Lab, US Dept Energy, Ames, IA 50011 USA.
RP Duguet, T (reprint author), Iowa State Univ, Ames Lab, US Dept Energy, Dept Chem, Ames, IA 50011 USA.
RI DUGUET, Thomas/B-6738-2011; Han, Yong/F-5701-2012; Ledieu,
   Julian/F-1430-2010
OI Han, Yong/0000-0001-5404-0911; 
FU Office of Science, Basic Energy Sciences, Materials Science Division of
   the U.S. Department of Energy (USDOE) through the Ames laboratory
   [DE-AC02-07CH11358]; European Network of Excellence on Complex Metallic
   Alloys (CMA) [NMP3-CT-2005-500145, ANR-07-Blan-0270]; National Science
   Foundation (NSF) [CHE-0809472]
FX The experimental component of this work was partially supported by the
   Office of Science, Basic Energy Sciences, Materials Science Division of
   the U.S. Department of Energy (USDOE) under Contract No.
   DE-AC02-07CH11358 through the Ames laboratory. It was also partially
   supported by the European Network of Excellence on Complex Metallic
   Alloys (CMA) under Contracts No. NMP3-CT-2005-500145 and No.
   ANR-07-Blan-0270. The theoretical component of this work was supported
   by the National Science Foundation (NSF) through Grant No. CHE-0809472.
NR 42
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U1 0
U2 3
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 9
PY 2010
VL 82
IS 22
AR 224204
DI 10.1103/PhysRevB.82.224204
PG 8
WC Physics, Condensed Matter
SC Physics
GA 713SQ
UT WOS:000286758100005
ER

PT J
AU Liu, XJ
   Wang, CZ
   Hupalo, M
   Yao, YX
   Tringides, MC
   Lu, WC
   Ho, KM
AF Liu, Xiaojie
   Wang, C. Z.
   Hupalo, M.
   Yao, Y. X.
   Tringides, M. C.
   Lu, W. C.
   Ho, K. M.
TI Adsorption and growth morphology of rare-earth metals on graphene
   studied by ab initio calculations and scanning tunneling microscopy
SO PHYSICAL REVIEW B
LA English
DT Article
ID TOTAL-ENERGY CALCULATIONS; AUGMENTED-WAVE METHOD; BASIS-SET; FILMS
AB Adsorption of rare-earth (RE) adatoms (Nd, Gd, Eu, and Yb) on graphene was studied by first-principles calculations based on the density-functional theory. The calculations show that the hollow site of graphene is the energetically favorable adsorption site for all the RE adatoms studied. The adsorption energies and diffusion barriers of Nd and Gd on graphene are found to be larger than those of Eu and Yb. Comparison with scanning tunneling microscopy experiments for Gd and Eu epitaxially grown on graphene confirms these calculated adsorption and barrier differences, since fractal-like islands are observed for Gd and flat-topped crystalline islands for Eu. The formation of flat Eu islands on graphene can be attributed to its low diffusion barrier and relatively larger ratio of adsorption energy to its bulk cohesive energy. The interactions between the Nd and Gd adatoms and graphene cause noticeable in-plane lattice distortions in the graphene layer. Adsorption of the RE adatoms on graphene also induces significant electric dipole and magnetic moments.
C1 [Liu, Xiaojie; Lu, W. C.] Jilin Univ, Inst Theoret Chem, State Key Lab Theoret & Computat Chem, Changchun 130021, Jilin, Peoples R China.
   [Liu, Xiaojie; Wang, C. Z.; Hupalo, M.; Yao, Y. X.; Tringides, M. C.; Ho, K. M.] US DOE, Ames Lab, Ames, IA 50011 USA.
   [Liu, Xiaojie; Wang, C. Z.; Hupalo, M.; Yao, Y. X.; Tringides, M. C.; Ho, K. M.] Iowa State Univ, Dept Phys & Astron, Ames, IA 50011 USA.
   [Lu, W. C.] Qingdao Univ, Coll Phys, Qingdao 266071, Shandong, Peoples R China.
   [Lu, W. C.] Qingdao Univ, Lab Fiber Mat & Modern Textile, Growing Base, State Key Lab, Qingdao 266071, Shandong, Peoples R China.
RP Liu, XJ (reprint author), Jilin Univ, Inst Theoret Chem, State Key Lab Theoret & Computat Chem, Changchun 130021, Jilin, Peoples R China.
EM wangcz@ameslab.gov; wencailu@jlu.edu.cn
RI Yao, Yongxin/B-7320-2008
FU U.S. Department of Energy, Basic Energy Sciences, Division of Materials
   Science and Engineering tional Energy Research Supercomputing Centre
   (NERSC) in Berkeley, CA [DE-AC02-07CH11358]; China Scholarship Council
   [2009617104]; National Natural Science Foundation of China [20773047,
   21043001]
FX Work at Ames Laboratory was supported by the U.S. Department of Energy,
   Basic Energy Sciences, Division of Materials Science and Engineering
   including a grant of computer time at the National Energy Research
   Supercomputing Centre (NERSC) in Berkeley, CA under Contract No.
   DE-AC02-07CH11358. Xiaojie Liu also acknowledges the support from China
   Scholarship Council (File No. 2009617104). W. C. L. acknowledges the
   support by the National Natural Science Foundation of China (Grants No.
   20773047 and No. 21043001).
NR 30
TC 36
Z9 38
U1 6
U2 56
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 9
PY 2010
VL 82
IS 24
AR 245408
DI 10.1103/PhysRevB.82.245408
PG 7
WC Physics, Condensed Matter
SC Physics
GA 715PF
UT WOS:000286895700006
ER

PT J
AU Tokiwa, Y
   Movshovich, R
   Ronning, F
   Bauer, ED
   Bianchi, AD
   Fisk, Z
   Thompson, JD
AF Tokiwa, Y.
   Movshovich, R.
   Ronning, F.
   Bauer, E. D.
   Bianchi, A. D.
   Fisk, Z.
   Thompson, J. D.
TI Anomalous effect of doping on the superconducting state of CeCoIn5 in
   high magnetic fields
SO PHYSICAL REVIEW B
LA English
DT Article
ID EXCHANGE FIELD
AB We investigated the effect of electron and hole doping on the high-field low-temperature superconducting state in CeCoIn5 by measuring specific heat of CeCo(In1-xMx)(5) with M=Sn, Cd, and Hg and x up to 0.33% at temperatures down to 0.1 K and fields up to 14 T. Although both Cd and Hg doping (hole doping) suppresses the zero-field T-c monotonically, H-c2 increases with small amounts of doping and has a maximum around x=0.2% (M=Cd). On the other hand, with Sn doping (electron doping) both zero-field T-c and H-c2 decrease monotonically. The critical temperature for the high-field low-temperature superconducting state correlates with H-c2 and T-c, which we interpret in support of the superconducting origin of this state.
C1 [Tokiwa, Y.; Movshovich, R.; Ronning, F.; Bauer, E. D.; Thompson, J. D.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Tokiwa, Y.] Univ Gottingen, Inst Phys 1, D-37077 Gottingen, Germany.
   [Bianchi, A. D.] Univ Montreal, Dept Phys Montreal, Montreal, PQ H3C 3J7, Canada.
   [Fisk, Z.] Univ Calif Irvine, Dept Phys, Irvine, CA 92697 USA.
RP Tokiwa, Y (reprint author), Los Alamos Natl Lab, POB 1663, Los Alamos, NM 87545 USA.
RI Bauer, Eric/D-7212-2011; Tokiwa, Yoshifumi/P-6593-2015; Bianchi,
   Andrea/E-9779-2010; 
OI Tokiwa, Yoshifumi/0000-0002-6294-7879; Bianchi,
   Andrea/0000-0001-9340-6971; Ronning, Filip/0000-0002-2679-7957; Bauer,
   Eric/0000-0003-0017-1937
FU U.S. Department of Energy; NSERC (Canada); FQRNT (Quebec); Canada
   Research Chair Foundation; NSF [NSF-DMR-0854781]
FX We are grateful to I. Vekhter, L. Boulaevskii, M. Graf, J. Sauls, and A.
   Balatsky for stimulating discussions. Work at Los Alamos National
   Laboratory was performed under the auspices of the U.S. Department of
   Energy. A.D.B. received support from NSERC (Canada), FQRNT (Quebec), and
   the Canada Research Chair Foundation. Z.F. acknowledges support NSF
   under Grant No. NSF-DMR-0854781.
NR 30
TC 18
Z9 18
U1 0
U2 6
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 9
PY 2010
VL 82
IS 22
AR 220502
DI 10.1103/PhysRevB.82.220502
PG 4
WC Physics, Condensed Matter
SC Physics
GA 713SQ
UT WOS:000286758100002
ER

PT J
AU Roberts, HLL
   Roberts, CD
   Bashir, A
   Gutierrez-Guerrero, LX
   Tandy, PC
AF Roberts, H. L. L.
   Roberts, C. D.
   Bashir, A.
   Gutierrez-Guerrero, L. X.
   Tandy, P. C.
TI Abelian anomaly and neutral pion production
SO PHYSICAL REVIEW C
LA English
DT Article
ID DYSON-SCHWINGER EQUATIONS; FORM-FACTOR; CHIRAL-SYMMETRY; HADRON PHYSICS;
   QCD; MESONS; MODEL
AB We show that in fully self-consistent treatments of the pion, namely, its static properties and elastic and transition form factors, the asymptotic limit of the product Q(2)G(gamma*gamma pi 0) (Q(2)), determined a priori by the interaction employed, is not exceeded at any finite value of spacelike momentum transfer. Furthermore, in such a treatment of a vector-vector contact-interaction one obtains a gamma*gamma -> pi(0) transition form factor that disagrees markedly with all available data. We explain that the contact interaction produces a pion distribution amplitude that is flat and nonvanishing at the endpoints. This amplitude characterizes a pointlike pion bound state. Such a state has the hardest possible form factors (i.e., form factors that become constant at large momentum transfers and hence are in striking disagreement with completed experiments). However, interactions with QCD-like behavior produce soft pions, a valence-quark distribution amplitude that vanishes as similar to(1 - x)(2) for x similar to 1, and results that agree with the bulk of existing data. Our analysis supports a view that the large-Q2 data obtained by the BaBar Collaboration is not an accurate measure of the gamma*gamma -> pi(0) form factor.
C1 [Roberts, H. L. L.; Roberts, C. D.] Argonne Natl Lab, Div Phys, Argonne, IL 60439 USA.
   [Roberts, H. L. L.; Roberts, C. D.] Forschungszentrum Julich, Inst Kernphys, D-52425 Julich, Germany.
   [Roberts, C. D.] Peking Univ, Dept Phys, Beijing 100871, Peoples R China.
   [Bashir, A.] Univ Michoacana, Inst Fis & Matemat, Morelia 58040, Michoacan, Mexico.
   [Tandy, P. C.] Kent State Univ, Dept Phys, Ctr Nucl Res, Kent, OH 44242 USA.
RP Roberts, HLL (reprint author), Argonne Natl Lab, Div Phys, Argonne, IL 60439 USA.
OI Roberts, Craig/0000-0002-2937-1361
FU Forschungszentrum Julich GmbH; US Department of Energy, Office of
   Nuclear Physics [DE-AC02-06CH11357]; Department of Energy's Science
   Undergraduate Laboratory; CIC [4.10, 46614-I]; CONACyT [4.10, 46614-I];
   US National Science Foundation [PHY-0903991]
FX We acknowledge valuable correspondence with S. J. Brodsky and
   discussions with C. Hanhart, R. J. Holt, and S. M. Schmidt. This work
   was supported by Forschungszentrum Julich GmbH, the US Department of
   Energy, Office of Nuclear Physics, Contract No. DE-AC02-06CH11357, the
   Department of Energy's Science Undergraduate Laboratory Internship
   programme;, CIC and CONACyT grants under Project Nos. 4.10 and 46614-I;
   and the US National Science Foundation under Grant No. PHY-0903991 in
   conjunction with a CONACyT Mexico-USA collaboration grant.
NR 37
TC 74
Z9 74
U1 0
U2 2
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2469-9985
EI 2469-9993
J9 PHYS REV C
JI Phys. Rev. C
PD DEC 9
PY 2010
VL 82
IS 6
AR 065202
DI 10.1103/PhysRevC.82.065202
PG 10
WC Physics, Nuclear
SC Physics
GA 713KN
UT WOS:000286737000005
ER

PT J
AU Abbasi, R
   Abdou, Y
   Abu-Zayyad, T
   Adams, J
   Aguilar, JA
   Ahlers, M
   Andeen, K
   Auffenberg, J
   Bai, X
   Baker, M
   Barwick, SW
   Bay, R
   Alba, JLB
   Beattie, K
   Beatty, JJ
   Bechet, S
   Becker, JK
   Becker, KH
   Benabderrahmane, ML
   BenZvi, S
   Berdermann, J
   Berghaus, P
   Berley, D
   Bernardini, E
   Bertrand, D
   Besson, DZ
   Bissok, M
   Blaufuss, E
   Blumenthal, J
   Boersma, DJ
   Bohm, C
   Bose, D
   Boser, S
   Botner, O
   Braun, J
   Buitink, S
   Carson, M
   Chirkin, D
   Christy, B
   Clem, J
   Clevermann, F
   Cohen, S
   Colnard, C
   Cowen, DF
   D'Agostino, MV
   Danninger, M
   Davis, JC
   De Clercq, C
   Demirors, L
   Depaepe, O
   Descamps, F
   Desiati, P
   de Vries-Uiterweerd, G
   DeYoung, T
   Diaz-Velez, JC
   Dierckxsens, M
   Dreyer, J
   Dumm, JP
   Duvoort, MR
   Ehrlich, R
   Eisch, J
   Ellsworth, RW
   Engdegard, O
   Euler, S
   Evenson, PA
   Fadiran, O
   Fazely, AR
   Fedynitch, A
   Feusels, T
   Filimonov, K
   Finley, C
   Foerster, MM
   Fox, BD
   Franckowiak, A
   Franke, R
   Gaisser, TK
   Gallagher, J
   Geisler, M
   Gerhardt, L
   Gladstone, L
   Glusenkamp, T
   Goldschmidt, A
   Goodman, JA
   Grant, D
   Griesel, T
   Gross, A
   Grullon, S
   Gurtner, M
   Ha, C
   Hallgren, A
   Halzen, F
   Han, K
   Hanson, K
   Helbing, K
   Herquet, P
   Hickford, S
   Hill, GC
   Hoffman, KD
   Homeier, A
   Hoshina, K
   Hubert, D
   Huelsnitz, W
   Hulss, JP
   Hulth, PO
   Hultqvist, K
   Hussain, S
   Ishihara, A
   Jacobsen, J
   Japaridze, GS
   Johansson, H
   Joseph, JM
   Kampert, KH
   Kappes, A
   Karg, T
   Karle, A
   Kelley, JL
   Kemming, N
   Kenny, P
   Kiryluk, J
   Kislat, F
   Klein, SR
   Koehne, JH
   Kohnen, G
   Kolanoski, H
   Kopke, L
   Koskinen, DJ
   Kowalski, M
   Kowarik, T
   Krasberg, M
   Krings, T
   Kroll, G
   Kuehn, K
   Kuwabara, T
   Labare, M
   Lafebre, S
   Laihem, K
   Landsman, H
   Larson, MJ
   Lauer, R
   Lehmann, R
   Lunemann, J
   Madsen, J
   Majumdar, P
   Marotta, A
   Maruyama, R
   Mase, K
   Matis, HS
   Matusik, M
   Meagher, K
   Merck, M
   Meszaros, P
   Meures, T
   Middell, E
   Milke, N
   Miller, J
   Montaruli, T
   Morse, R
   Movit, SM
   Nahnhauer, R
   Nam, JW
   Naumann, U
   Niessen, P
   Nygren, DR
   Odrowski, S
   Olivas, A
   Olivo, M
   O'Murchadha, A
   Ono, M
   Panknin, S
   Paul, L
   de los Heros, CP
   Petrovic, J
   Piegsa, A
   Pieloth, D
   Porrata, R
   Posselt, J
   Price, PB
   Prikockis, M
   Przybylski, GT
   Rawlins, K
   Redl, P
   Resconi, E
   Rhode, W
   Ribordy, M
   Rizzo, A
   Rodrigues, JP
   Roth, P
   Rothmaier, F
   Rott, C
   Ruhe, T
   Rutledge, D
   Ruzybayev, B
   Ryckbosch, D
   Sander, HG
   Santander, M
   Sarkar, S
   Schatto, K
   Schlenstedt, S
   Schmidt, T
   Schukraft, A
   Schultes, A
   Schulz, O
   Schunck, M
   Seckel, D
   Semburg, B
   Seo, SH
   Sestayo, Y
   Seunarine, S
   Silvestri, A
   Singh, K
   Slipak, A
   Spiczak, GM
   Spiering, C
   Stamatikos, M
   Stanev, T
   Stephens, G
   Stezelberger, T
   Stokstad, RG
   Stoyanov, S
   Strahler, EA
   Straszheim, T
   Sullivan, GW
   Swillens, Q
   Taavola, H
   Taboada, I
   Tamburro, A
   Tarasova, O
   Tepe, A
   Ter-Antonyan, S
   Tilav, S
   Toale, PA
   Toscano, S
   Tosi, D
   Turcan, D
   van Eijndhoven, N
   Vandenbroucke, J
   Van Overloop, A
   van Santen, J
   Voge, M
   Voigt, B
   Walck, C
   Waldenmaier, T
   Wallraff, M
   Walter, M
   Weaver, C
   Wendt, C
   Westerhoff, S
   Whitehorn, N
   Wiebe, K
   Wiebusch, CH
   Wikstrom, G
   Williams, DR
   Wischnewski, R
   Wissing, H
   Wolf, M
   Woschnagg, K
   Xu, C
   Xu, XW
   Yodh, G
   Yoshida, S
   Zarzhitsky, P
AF Abbasi, R.
   Abdou, Y.
   Abu-Zayyad, T.
   Adams, J.
   Aguilar, J. A.
   Ahlers, M.
   Andeen, K.
   Auffenberg, J.
   Bai, X.
   Baker, M.
   Barwick, S. W.
   Bay, R.
   Alba, J. L. Bazo
   Beattie, K.
   Beatty, J. J.
   Bechet, S.
   Becker, J. K.
   Becker, K. -H.
   Benabderrahmane, M. L.
   BenZvi, S.
   Berdermann, J.
   Berghaus, P.
   Berley, D.
   Bernardini, E.
   Bertrand, D.
   Besson, D. Z.
   Bissok, M.
   Blaufuss, E.
   Blumenthal, J.
   Boersma, D. J.
   Bohm, C.
   Bose, D.
   Boeser, S.
   Botner, O.
   Braun, J.
   Buitink, S.
   Carson, M.
   Chirkin, D.
   Christy, B.
   Clem, J.
   Clevermann, F.
   Cohen, S.
   Colnard, C.
   Cowen, D. F.
   D'Agostino, M. V.
   Danninger, M.
   Davis, J. C.
   De Clercq, C.
   Demiroers, L.
   Depaepe, O.
   Descamps, F.
   Desiati, P.
   de Vries-Uiterweerd, G.
   DeYoung, T.
   Diaz-Velez, J. C.
   Dierckxsens, M.
   Dreyer, J.
   Dumm, J. P.
   Duvoort, M. R.
   Ehrlich, R.
   Eisch, J.
   Ellsworth, R. W.
   Engdegard, O.
   Euler, S.
   Evenson, P. A.
   Fadiran, O.
   Fazely, A. R.
   Fedynitch, A.
   Feusels, T.
   Filimonov, K.
   Finley, C.
   Foerster, M. M.
   Fox, B. D.
   Franckowiak, A.
   Franke, R.
   Gaisser, T. K.
   Gallagher, J.
   Geisler, M.
   Gerhardt, L.
   Gladstone, L.
   Gluesenkamp, T.
   Goldschmidt, A.
   Goodman, J. A.
   Grant, D.
   Griesel, T.
   Gross, A.
   Grullon, S.
   Gurtner, M.
   Ha, C.
   Hallgren, A.
   Halzen, F.
   Han, K.
   Hanson, K.
   Helbing, K.
   Herquet, P.
   Hickford, S.
   Hill, G. C.
   Hoffman, K. D.
   Homeier, A.
   Hoshina, K.
   Hubert, D.
   Huelsnitz, W.
   Huelss, J. -P.
   Hulth, P. O.
   Hultqvist, K.
   Hussain, S.
   Ishihara, A.
   Jacobsen, J.
   Japaridze, G. S.
   Johansson, H.
   Joseph, J. M.
   Kampert, K. -H.
   Kappes, A.
   Karg, T.
   Karle, A.
   Kelley, J. L.
   Kemming, N.
   Kenny, P.
   Kiryluk, J.
   Kislat, F.
   Klein, S. R.
   Koehne, J. -H.
   Kohnen, G.
   Kolanoski, H.
   Koepke, L.
   Koskinen, D. J.
   Kowalski, M.
   Kowarik, T.
   Krasberg, M.
   Krings, T.
   Kroll, G.
   Kuehn, K.
   Kuwabara, T.
   Labare, M.
   Lafebre, S.
   Laihem, K.
   Landsman, H.
   Larson, M. J.
   Lauer, R.
   Lehmann, R.
   Luenemann, J.
   Madsen, J.
   Majumdar, P.
   Marotta, A.
   Maruyama, R.
   Mase, K.
   Matis, H. S.
   Matusik, M.
   Meagher, K.
   Merck, M.
   Meszaros, P.
   Meures, T.
   Middell, E.
   Milke, N.
   Miller, J.
   Montaruli, T.
   Morse, R.
   Movit, S. M.
   Nahnhauer, R.
   Nam, J. W.
   Naumann, U.
   Niessen, P.
   Nygren, D. R.
   Odrowski, S.
   Olivas, A.
   Olivo, M.
   O'Murchadha, A.
   Ono, M.
   Panknin, S.
   Paul, L.
   de los Heros, C. Perez
   Petrovic, J.
   Piegsa, A.
   Pieloth, D.
   Porrata, R.
   Posselt, J.
   Price, P. B.
   Prikockis, M.
   Przybylski, G. T.
   Rawlins, K.
   Redl, P.
   Resconi, E.
   Rhode, W.
   Ribordy, M.
   Rizzo, A.
   Rodrigues, J. P.
   Roth, P.
   Rothmaier, F.
   Rott, C.
   Ruhe, T.
   Rutledge, D.
   Ruzybayev, B.
   Ryckbosch, D.
   Sander, H. -G.
   Santander, M.
   Sarkar, S.
   Schatto, K.
   Schlenstedt, S.
   Schmidt, T.
   Schukraft, A.
   Schultes, A.
   Schulz, O.
   Schunck, M.
   Seckel, D.
   Semburg, B.
   Seo, S. H.
   Sestayo, Y.
   Seunarine, S.
   Silvestri, A.
   Singh, K.
   Slipak, A.
   Spiczak, G. M.
   Spiering, C.
   Stamatikos, M.
   Stanev, T.
   Stephens, G.
   Stezelberger, T.
   Stokstad, R. G.
   Stoyanov, S.
   Strahler, E. A.
   Straszheim, T.
   Sullivan, G. W.
   Swillens, Q.
   Taavola, H.
   Taboada, I.
   Tamburro, A.
   Tarasova, O.
   Tepe, A.
   Ter-Antonyan, S.
   Tilav, S.
   Toale, P. A.
   Toscano, S.
   Tosi, D.
   Turcan, D.
   van Eijndhoven, N.
   Vandenbroucke, J.
   Van Overloop, A.
   van Santen, J.
   Voge, M.
   Voigt, B.
   Walck, C.
   Waldenmaier, T.
   Wallraff, M.
   Walter, M.
   Weaver, Ch.
   Wendt, C.
   Westerhoff, S.
   Whitehorn, N.
   Wiebe, K.
   Wiebusch, C. H.
   Wikstroem, G.
   Williams, D. R.
   Wischnewski, R.
   Wissing, H.
   Wolf, M.
   Woschnagg, K.
   Xu, C.
   Xu, X. W.
   Yodh, G.
   Yoshida, S.
   Zarzhitsky, P.
CA IceCube Collaboration
TI Search for a Lorentz-violating sidereal signal with atmospheric
   neutrinos in IceCube
SO PHYSICAL REVIEW D
LA English
DT Article
AB A search for sidereal modulation in the flux of atmospheric muon neutrinos in IceCube was performed. Such a signal could be an indication of Lorentz-violating physics. Neutrino oscillation models, derivable from extensions to the standard model, allow for neutrino oscillations that depend on the neutrino's direction of propagation. No such direction-dependent variation was found. A discrete Fourier transform method was used to constrain the Lorentz and CPT-violating coefficients in one of these models. Because of the unique high energy reach of IceCube, it was possible to improve constraints on certain Lorentz-violating oscillations by 3 orders of magnitude with respect to limits set by other experiments.
C1 [Berley, D.; Blaufuss, E.; Christy, B.; Ehrlich, R.; Ellsworth, R. W.; Goodman, J. A.; Hoffman, K. D.; Huelsnitz, W.; Meagher, K.; Olivas, A.; Redl, P.; Roth, P.; Schmidt, T.; Straszheim, T.; Sullivan, G. W.; Turcan, D.; Wissing, H.] Univ Maryland, Dept Phys, College Pk, MD 20742 USA.
   [Bissok, M.; Blumenthal, J.; Boersma, D. J.; Euler, S.; Geisler, M.; Gluesenkamp, T.; Huelss, J. -P.; Krings, T.; Laihem, K.; Meures, T.; Paul, L.; Schukraft, A.; Schunck, M.; Wallraff, M.; Wiebusch, C. H.] Rhein Westfal TH Aachen, Inst Phys 3, D-52056 Aachen, Germany.
   [Williams, D. R.] Univ Alabama, Dept Phys & Astron, Tuscaloosa, AL 35487 USA.
   [Rawlins, K.] Univ Alaska Anchorage, Dept Phys & Astron, Anchorage, AK 99508 USA.
   [Fadiran, O.; Japaridze, G. S.] Clark Atlanta Univ, CTSPS, Atlanta, GA 30314 USA.
   [Taboada, I.; Tepe, A.] Georgia Inst Technol, Sch Phys, Atlanta, GA 30332 USA.
   [Taboada, I.; Tepe, A.] Georgia Inst Technol, Ctr Relativist Astrophys, Atlanta, GA 30332 USA.
   [Fazely, A. R.; Ter-Antonyan, S.; Xu, X. W.] Southern Univ, Dept Phys, Baton Rouge, LA 70813 USA.
   [Bay, R.; D'Agostino, M. V.; Filimonov, K.; Gerhardt, L.; Kiryluk, J.; Klein, S. R.; Porrata, R.; Price, P. B.; Vandenbroucke, J.; Woschnagg, K.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Beattie, K.; Buitink, S.; Gerhardt, L.; Goldschmidt, A.; Joseph, J. M.; Kiryluk, J.; Klein, S. R.; Matis, H. S.; Nygren, D. R.; Przybylski, G. T.; Stezelberger, T.; Stokstad, R. G.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
   [Kappes, A.; Kemming, N.; Kolanoski, H.; Lehmann, R.; Waldenmaier, T.] Humboldt Univ, Inst Phys, D-12489 Berlin, Germany.
   [Becker, J. K.; Dreyer, J.; Fedynitch, A.] Ruhr Univ Bochum, Fak Phys & Astron, D-44780 Bochum, Germany.
   [Boeser, S.; Franckowiak, A.; Homeier, A.; Kowalski, M.; Panknin, S.] Univ Bonn, Inst Phys, D-53115 Bonn, Germany.
   [Seunarine, S.] Univ W Indies, Dept Phys, BB-11000 Bridgetown, Barbados.
   [Bechet, S.; Bertrand, D.; Dierckxsens, M.; Hanson, K.; Marotta, A.; Petrovic, J.; Swillens, Q.] Univ Libre Brussels, Sci Fac CP230, B-1050 Brussels, Belgium.
   [Bose, D.; De Clercq, C.; Depaepe, O.; Hubert, D.; Labare, M.; Rizzo, A.; Singh, K.; Strahler, E. A.; van Eijndhoven, N.] Vrije Univ Brussel, Dienst ELEM, B-1050 Brussels, Belgium.
   [Ishihara, A.; Mase, K.; Ono, M.; Yoshida, S.] Chiba Univ, Dept Phys, Chiba 2638522, Japan.
   [Adams, J.; Gross, A.; Han, K.; Hickford, S.] Univ Canterbury, Dept Phys & Astron, Christchurch 1, New Zealand.
   [Beatty, J. J.; Davis, J. C.; Kuehn, K.; Rott, C.; Stamatikos, M.] Ohio State Univ, Dept Phys, Columbus, OH 43210 USA.
   [Beatty, J. J.; Davis, J. C.; Kuehn, K.; Rott, C.; Stamatikos, M.] Ohio State Univ, Ctr Cosmol & Astroparticle Phys, Columbus, OH 43210 USA.
   [Beatty, J. J.] Ohio State Univ, Dept Astron, Columbus, OH 43210 USA.
   [Clevermann, F.; Koehne, J. -H.; Milke, N.; Pieloth, D.; Rhode, W.; Ruhe, T.] TU Dortmund Univ, Dept Phys, D-44221 Dortmund, Germany.
   [Grant, D.] Univ Alberta, Dept Phys, Edmonton, AB T6G 2G7, Canada.
   [Abdou, Y.; Carson, M.; Descamps, F.; de Vries-Uiterweerd, G.; Feusels, T.; Ryckbosch, D.; Van Overloop, A.] Univ Ghent, Dept Subat & Radiat Phys, B-9000 Ghent, Belgium.
   [Colnard, C.; Gross, A.; Odrowski, S.; Resconi, E.; Schulz, O.; Sestayo, Y.; Voge, M.; Wolf, M.] Max Planck Inst Kernphys, D-69177 Heidelberg, Germany.
   [Barwick, S. W.; Nam, J. W.; Silvestri, A.; Yodh, G.] Univ Calif Irvine, Dept Phys & Astron, Irvine, CA 92697 USA.
   [Cohen, S.; Demiroers, L.; Ribordy, M.] Ecole Polytech Fed Lausanne, High Energy Phys Lab, CH-1015 Lausanne, Switzerland.
   [Besson, D. Z.; Kenny, P.; Koskinen, D. J.] Univ Kansas, Dept Phys & Astron, Lawrence, KS 66045 USA.
   [Gallagher, J.] Univ Wisconsin, Dept Astron, Madison, WI 53706 USA.
   [Abbasi, R.; Aguilar, J. A.; Andeen, K.; Baker, M.; BenZvi, S.; Berghaus, P.; Braun, J.; Chirkin, D.; Desiati, P.; Diaz-Velez, J. C.; Dumm, J. P.; Eisch, J.; Gladstone, L.; Grullon, S.; Halzen, F.; Hanson, K.; Hill, G. C.; Hoshina, K.; Jacobsen, J.; Karle, A.; Kelley, J. L.; Krasberg, M.; Landsman, H.; Maruyama, R.; Merck, M.; Montaruli, T.; Morse, R.; O'Murchadha, A.; Rodrigues, J. P.; Santander, M.; Toscano, S.; van Santen, J.; Weaver, Ch.; Wendt, C.; Westerhoff, S.; Whitehorn, N.] Univ Wisconsin, Dept Phys, Madison, WI 53706 USA.
   [Griesel, T.; Koepke, L.; Kowarik, T.; Kroll, G.; Luenemann, J.; Piegsa, A.; Rothmaier, F.; Sander, H. -G.; Schatto, K.; Wiebe, K.] Johannes Gutenberg Univ Mainz, Inst Phys, D-55099 Mainz, Germany.
   [Herquet, P.; Kohnen, G.] Univ Mons, B-7000 Mons, Belgium.
   [Ahlers, M.; Sarkar, S.] Univ Oxford, Dept Phys, Oxford OX1 3NP, England.
   [Abu-Zayyad, T.; Madsen, J.; Spiczak, G. M.; Tamburro, A.] Univ Wisconsin, Dept Phys, River Falls, WI 54022 USA.
   [Bohm, C.; Danninger, M.; Finley, C.; Hulth, P. O.; Hultqvist, K.; Johansson, H.; Seo, S. H.; Walck, C.; Wikstroem, G.] Stockholm Univ, Dept Phys, SE-10691 Stockholm, Sweden.
   [Bohm, C.; Danninger, M.; Finley, C.; Hulth, P. O.; Hultqvist, K.; Johansson, H.; Seo, S. H.; Walck, C.; Wikstroem, G.] Stockholm Univ, Oskar Klein Ctr, SE-10691 Stockholm, Sweden.
   [Cowen, D. F.; Meszaros, P.; Movit, S. M.] Penn State Univ, Dept Astron & Astrophys, University Pk, PA 16802 USA.
   [Botner, O.; Engdegard, O.; Hallgren, A.; Miller, J.; Olivo, M.; de los Heros, C. Perez; Taavola, H.] Uppsala Univ, Dept Phys & Astron, S-75120 Uppsala, Sweden.
   [Duvoort, M. R.] Univ Utrecht, Dept Phys & Astron, SRON, NL-3584 CC Utrecht, Netherlands.
   [Auffenberg, J.; Becker, K. -H.; Gurtner, M.; Helbing, K.; Kampert, K. -H.; Karg, T.; Matusik, M.; Naumann, U.; Posselt, J.; Schultes, A.; Semburg, B.] Univ Wuppertal, Dept Phys, D-42119 Wuppertal, Germany.
   [Alba, J. L. Bazo; Benabderrahmane, M. L.; Berdermann, J.; Bernardini, E.; Franke, R.; Kislat, F.; Lauer, R.; Majumdar, P.; Middell, E.; Nahnhauer, R.; Schlenstedt, S.; Spiering, C.; Tarasova, O.; Tosi, D.; Voigt, B.; Walter, M.; Wischnewski, R.] DESY, D-15735 Zeuthen, Germany.
   [Montaruli, T.] Sezione Ist Nazl Fis Nucl, Dipartimento Fis, I-70126 Bari, Italy.
   [Stamatikos, M.] NASA, Goddard Space Flight Ctr, Greenbelt, MD 20771 USA.
RP Huelsnitz, W (reprint author), Univ Maryland, Dept Phys, College Pk, MD 20742 USA.
EM whuelsnitz@icecube.umd.edu
RI Sarkar, Subir/G-5978-2011; Beatty, James/D-9310-2011; Taavola,
   Henric/B-4497-2011; Wiebusch, Christopher/G-6490-2012; Kowalski,
   Marek/G-5546-2012; Tamburro, Alessio/A-5703-2013; Botner,
   Olga/A-9110-2013; Hallgren, Allan/A-8963-2013; Tjus, Julia/G-8145-2012;
   Auffenberg, Jan/D-3954-2014; Koskinen, David/G-3236-2014; Aguilar
   Sanchez, Juan Antonio/H-4467-2015; Maruyama, Reina/A-1064-2013
OI Actis, Oxana/0000-0001-8851-3983; Ter-Antonyan,
   Samvel/0000-0002-5788-1369; Schukraft, Anne/0000-0002-9112-5479; Perez
   de los Heros, Carlos/0000-0002-2084-5866; Buitink,
   Stijn/0000-0002-6177-497X; Carson, Michael/0000-0003-0400-7819; Hubert,
   Daan/0000-0002-4365-865X; Benabderrahmane, Mohamed
   Lotfi/0000-0003-4410-5886; Sarkar, Subir/0000-0002-3542-858X; Beatty,
   James/0000-0003-0481-4952; Taavola, Henric/0000-0002-2604-2810;
   Wiebusch, Christopher/0000-0002-6418-3008; Auffenberg,
   Jan/0000-0002-1185-9094; Koskinen, David/0000-0002-0514-5917; Aguilar
   Sanchez, Juan Antonio/0000-0003-2252-9514; Maruyama,
   Reina/0000-0003-2794-512X
FU U.S. National Science Foundation-Office of Polar Programs; U.S. National
   Science Foundation-Physics Division; University of Wisconsin Alumni
   Research Foundation; Grid Laboratory Of Wisconsin (GLOW) at the
   University of Wisconsin-Madison; Open Science Grid (OSG); U.S.
   Department of Energy, and National Energy Research Scientific Computing
   Center; Louisiana Optical Network Initiative (LONI); National Science
   and Engineering Research Council of Canada; Swedish Research Council;
   German Ministry for Education and Research (BMBF); Deutsche
   Forschungsgemeinschaft (DFG); Research Department of Plasmas with
   Complex Interactions (Bochum), Germany; Fund for Scientific Research
   (FNRS-FWO); FWO Odysseus programme; Flanders Institute to encourage
   scientific and technological research in industry (IWT); Belgian Federal
   Science Policy Office (Belspo); University of Oxford, United Kingdom;
   Marsden Fund, New Zealand; Japan Society for Promotion of Science
   (JSPS); Swiss National Science Foundation (SNSF), Switzerland; EU; Capes
   Foundation, Ministry of Education of Brazil; Swedish Polar Research
   Secretariat; Swedish National Infrastructure for Computing (SNIC); Knut
   and Alice Wallenberg Foundation, Sweden
FX We acknowledge support from the following agencies: U.S. National
   Science Foundation-Office of Polar Programs, U.S. National Science
   Foundation-Physics Division, University of Wisconsin Alumni Research
   Foundation, the Grid Laboratory Of Wisconsin (GLOW) grid infrastructure
   at the University of Wisconsin-Madison, the Open Science Grid (OSG) grid
   infrastructure; U.S. Department of Energy, and National Energy Research
   Scientific Computing Center, the Louisiana Optical Network Initiative
   (LONI) grid computing resources; National Science and Engineering
   Research Council of Canada; Swedish Research Council, Swedish Polar
   Research Secretariat, Swedish National Infrastructure for Computing
   (SNIC), and Knut and Alice Wallenberg Foundation, Sweden; German
   Ministry for Education and Research (BMBF), Deutsche
   Forschungsgemeinschaft (DFG), Research Department of Plasmas with
   Complex Interactions (Bochum), Germany; Fund for Scientific Research
   (FNRS-FWO), FWO Odysseus programme, Flanders Institute to encourage
   scientific and technological research in industry (IWT), Belgian Federal
   Science Policy Office (Belspo); University of Oxford, United Kingdom;
   Marsden Fund, New Zealand; Japan Society for Promotion of Science
   (JSPS); the Swiss National Science Foundation (SNSF), Switzerland; A.
   Gross acknowledges support by the EU Marie Curie OIF Program; J. P.
   Rodrigues acknowledges support by the Capes Foundation, Ministry of
   Education of Brazil.
NR 29
TC 44
Z9 44
U1 0
U2 4
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 9
PY 2010
VL 82
IS 11
AR 112003
DI 10.1103/PhysRevD.82.112003
PG 6
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DC
UT WOS:000286566200001
ER

PT J
AU Azeyanagi, T
   Hanada, M
   Unsal, M
   Yacoby, R
AF Azeyanagi, Tatsuo
   Hanada, Masanori
   Uensal, Mithat
   Yacoby, Ran
TI Large-N reduction in QCD-like theories with massive adjoint fermions
SO PHYSICAL REVIEW D
LA English
DT Article
AB Large-N QCD with heavy adjoint fermions emulates pure Yang-Mills theory at long distances. We study this theory on a four-and three-torus, and analytically argue the existence of a large-small volume equivalence. For any finite mass, the center-symmetry unbroken phase exists at sufficiently small volume and this phase can be used to study the large volume limit through the Eguchi-Kawai equivalence. A finite-temperature version of volume independence implies that thermodynamics on R-3 x S-1 can be studied via a unitary matrix quantum mechanics on S1, by varying the temperature. To confirm this nonperturbatively, we numerically study both zero-and one-dimensional theories by using Monte Carlo simulation. The order of finite-N corrections turns out to be 1/N. We introduce various twisted versions of the reduced QCD which systematically suppress finite-N corrections. Using a twisted model, we observe the confinement/deconfinement transition on a 1(3) x 2 lattice. The result agrees with large volume simulations of Yang-Mills theory. We also comment that the twisted model can serve as a nonperturbative formulation of the noncommutative Yang-Mills theory.
C1 [Azeyanagi, Tatsuo] Kyoto Univ, Dept Phys, Kyoto 6068502, Japan.
   [Hanada, Masanori; Uensal, Mithat; Yacoby, Ran] Weizmann Inst Sci, Dept Particle Phys & Astrophys, IL-76100 Rehovot, Israel.
   [Uensal, Mithat] Stanford Univ, SLAC, Stanford, CA 94025 USA.
   [Uensal, Mithat] Stanford Univ, Dept Phys, Stanford, CA 94025 USA.
RP Azeyanagi, T (reprint author), Kyoto Univ, Dept Phys, Kyoto 6068502, Japan.
EM aze@gauge.scphys.kyoto-u.ac.jp; masanori.hanada@weizmann.ac.il;
   unsal@slac.stanford.edu; ran.yacoby@weizmann.ac.il
FU Japan Society for the Promotion of Science (JSPS); Global COE program
   from MEXT; U.S. Department of Energy [DE-AC02-76SF00515]
FX The authors would like to thank Adi Armoni, Barak Bringoltz, Masafumi
   Fukuma, Antonio Gonzalez-Arroyo, Hikaru Kawai, Erich Poppitz, Steve
   Sharpe, and Larry Yaffe for stimulating discussions and comments. Very
   special thanks to Barak Bringoltz for providing his numerical data,
   which was very useful for checking consistency of our simulation code.
   The authors would also like to thank organizers and participants of
   "MCFP Workshop on Large-N Gauge Theories'' for hospitality and useful
   conversations. T. A. would like to thank Weizmann Institute of Science
   and Albert Einstein Institute for hospitality, where a part of this work
   was done; he is supported by the Japan Society for the Promotion of
   Science (JSPS) and by the grant-in-aid for the Global COE program "The
   Next Generation of Physics, Spun from Universality and Emergence'' from
   the MEXT. M. U. expresses his gratitude to Weizmann Institute of Science
   for hospitality; his work was supported by the U.S. Department of Energy
   Grant No. DE-AC02-76SF00515. M. H. and M. U. thank Aspen Center for
   Physics where portions of this work was done. The numerical computations
   in this work were in part carried out on clusters at the Yukawa
   Institute.
NR 56
TC 29
Z9 29
U1 0
U2 0
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 9
PY 2010
VL 82
IS 12
AR 125013
DI 10.1103/PhysRevD.82.125013
PG 19
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA V25JX
UT WOS:000208475400005
ER

PT J
AU Li, YL
   Chemerisov, S
   Shen, BF
AF Li, Yuelin
   Chemerisov, Sergey
   Shen, Baifei
TI Ultrafast spatiotemporal laser pulse engineering using chromatic
   dispersion
SO NEW JOURNAL OF PHYSICS
LA English
DT Article
ID ULTRASHORT PULSES; GENERATION; PHASE; PROFILES; LENSES; SYSTEM; DAMAGE;
   TRAIN; BEAM
AB We discuss a new method for manipulating the optical field distribution in time and space at the focal plane of a chromatic lens. Chromatic dispersion and aberration make it possible to control the photon distribution in both time and space by properly controlling the amplitude and phase of the incident laser pulse, including shortening a laser pulse or generating a specific time-dependent transverse distribution. As an example, we discuss the generation of a quasi-three-dimensional ellipsoidal photon distribution and a proof-of-principle experiment, where favourable agreement between theoretical calculations and the data is observed.
C1 [Li, Yuelin; Chemerisov, Sergey] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Shen, Baifei] Chinese Acad Sci, Shanghai Inst Opt & Fine Mech, State Key Lab High Field Laser Phys, Shanghai 201800, Peoples R China.
RP Li, YL (reprint author), Argonne Natl Lab, 9700 S Cass Ave, Argonne, IL 60439 USA.
EM ylli@aps.anl.gov
OI Li, Yuelin/0000-0002-6229-7490
FU US Department of Energy, Office of Science, Office of Basic Energy
   Sciences [DE-AC02-06CH11357]; 973 Program [2006CB806000]; National
   Natural Science Foundation of China [10834008, 60921004]; Shanghai
   Natural Science Foundation [10ZR1433800]; Program of Shanghai Subject
   Chief Scientist [09XD1404300]
FX We thank K-J Kim and K Harkay for support. This work was supported by
   the US Department of Energy, Office of Science, Office of Basic Energy
   Sciences, under contract no. DE-AC02-06CH11357. BS is also supported by
   the 973 Program (project no. 2006CB806000), the National Natural Science
   Foundation of China (project nos 10834008 and 60921004), the Shanghai
   Natural Science Foundation (10ZR1433800) and the Program of Shanghai
   Subject Chief Scientist (09XD1404300).
NR 41
TC 1
Z9 1
U1 0
U2 7
PU IOP PUBLISHING LTD
PI BRISTOL
PA DIRAC HOUSE, TEMPLE BACK, BRISTOL BS1 6BE, ENGLAND
SN 1367-2630
J9 NEW J PHYS
JI New J. Phys.
PD DEC 8
PY 2010
VL 12
AR 123011
DI 10.1088/1367-2630/12/12/123011
PG 17
WC Physics, Multidisciplinary
SC Physics
GA 698GS
UT WOS:000285582800003
ER

PT J
AU Dounas-Frazer, DR
   Tsigutkin, K
   Family, A
   Budker, D
AF Dounas-Frazer, D. R.
   Tsigutkin, K.
   Family, A.
   Budker, D.
TI Measurement of dynamic Stark polarizabilities by analyzing spectral line
   shapes of forbidden transitions
SO PHYSICAL REVIEW A
LA English
DT Article
ID LIGHT-FORCE TECHNIQUE; INTERFEROMETER; FIELDS; CLOCK
AB We present a measurement of the dynamic scalar and tensor polarizabilities of the excited state vertical bar 5d6s (3)D(1)> in atomic ytterbium. The polarizabilities were measured by analyzing the spectral lineshape of the 408-nm 6s(2) (1)S(0) -> 5d6s (3)D(1) transition driven by a standing wave of resonant light in the presence of static electric and magnetic fields. Due to the interaction of atoms with the standing wave, the lineshape has a characteristic polarizability-dependent distortion. A theoretical model was used to simulate the lineshape and determine a combination of the polarizabilities of the ground and excited states by fitting the model to experimental data. This combination was measured with a 13% uncertainty, only 3% of which was due to uncertainty in the simulation and fitting procedure. By comparing two different combinations of polarizabilities, the scalar and tensor polarizabilities of the state vertical bar 5d6s (3)D(1)> were measured to be alpha(0)((3)D(1)) = 0.009(21) Hz(V/cm)(-2) and alpha 2((3)D(1)) = -0.103(26) Hz(V/cm)(-2), respectively. We show that this technique can be applied to similar atomic systems.
C1 [Dounas-Frazer, D. R.; Tsigutkin, K.; Family, A.; Budker, D.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Budker, D.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Nucl Sci, Berkeley, CA 94720 USA.
RP Dounas-Frazer, DR (reprint author), Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
EM drdf@berkeley.edu
RI Budker, Dmitry/F-7580-2016
OI Budker, Dmitry/0000-0002-7356-4814
FU NSF
FX The authors acknowledge helpful discussions with and important
   contributions of S. Corinaldi, A. Derevianko, V.A. Dzuba, N.A. Leefer,
   S.M. Rochester, and J.E. Stalnaker. This work has been supported by NSF.
NR 30
TC 3
Z9 3
U1 1
U2 3
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1050-2947
J9 PHYS REV A
JI Phys. Rev. A
PD DEC 8
PY 2010
VL 82
IS 6
AR 062507
DI 10.1103/PhysRevA.82.062507
PG 11
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 713JI
UT WOS:000286733900004
ER

PT J
AU Lee, JS
   Vescovo, E
   Plucinski, L
   Schneider, CM
   Kao, CC
AF Lee, J. -S.
   Vescovo, E.
   Plucinski, L.
   Schneider, C. M.
   Kao, C. -C.
TI Electronic structure and magnetic properties of epitaxial FeRh(001)
   ultrathin films on W(100)
SO PHYSICAL REVIEW B
LA English
DT Article
ID ANTIFERROMAGNETIC-FERROMAGNETIC TRANSITION; EXCHANGE SPRING FILMS; FE-RH
   ALLOYS; PHASE-TRANSITIONS; RECORDING MEDIA; ORDERED FERH; DICHROISM;
   MOMENTS; IRON
AB Epitaxial FeRh(100) films (CsCl structure, similar to 10 ML thick), prepared in situ on a W(100) single-crystal substrate, have been investigated via valence band and core-level photoemission. The presence of the temperature-induced, first-order, antiferromagnetic to ferromagnetic (AF -> FM) transition in these films has been verified via linear dichroism in photoemission from the Fe 3p levels. Core-level spectra indicate a large moment on the Fe atom, practically unchanged in the FM and AF phases. Judging from the valence band spectra, the metamagnetic transition takes place without substantial modification of the electronic structure. In the FM phase, the spin-resolved spectra compare satisfactorily to the calculated spin-polarized bulk band structure.
C1 [Lee, J. -S.; Vescovo, E.; Kao, C. -C.] Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
   [Plucinski, L.; Schneider, C. M.] Res Ctr Julich, Inst Solid State Res IFF 9, Julich, Germany.
RP Lee, JS (reprint author), Brookhaven Natl Lab, Natl Synchrotron Light Source, Upton, NY 11973 USA.
RI Plucinski, Lukasz/J-4987-2013; Schneider, Claus/H-7453-2012
OI Plucinski, Lukasz/0000-0002-6865-7274; Schneider,
   Claus/0000-0002-3920-6255
FU U.S. DOE, Office of Science, Office of Basic Energy Sciences
   [DE-AC02-98CH10886]
FX The NSLS, Brookhaven National Laboratory, is supported by the U.S. DOE,
   Office of Science, Office of Basic Energy Sciences, under Contract No.
   DE-AC02-98CH10886.
NR 32
TC 9
Z9 9
U1 6
U2 27
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 8
PY 2010
VL 82
IS 22
AR 224410
DI 10.1103/PhysRevB.82.224410
PG 6
WC Physics, Condensed Matter
SC Physics
GA 713SJ
UT WOS:000286757400004
ER

PT J
AU Jordanova, VK
   Zaharia, S
   Welling, DT
AF Jordanova, V. K.
   Zaharia, S.
   Welling, D. T.
TI Comparative study of ring current development using empirical, dipolar,
   and self-consistent magnetic field simulations
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID PENETRATION ELECTRIC-FIELDS; DAWN-DUSK ASYMMETRY; INNER MAGNETOSPHERE;
   KINETIC-MODEL; STORM; PLASMA; SUBSTORM; DYNAMICS; DISTRIBUTIONS;
   PARTICLES
AB The effects of nondipolar magnetic field configuration and the feedback of a self-consistently computed magnetic field on ring current dynamics are investigated during a double-dip storm with minima SYM-H = -90 nT at similar to 2000 UT, 20 November, and SYM-H = -127 nT at similar to 1000 UT, 21 November 2002. We use our kinetic ring current-atmosphere interactions model with self-consistent magnetic field (RAM-SCB) to study the redistribution of plasma in the inner magnetosphere after its fresh injection from the plasma sheet. The kinetic model is fully extended to nondipolar magnetic (B) field geometry and two-way coupled with an Euler-potential-based equilibrium model that calculates self-consistently the three-dimensional magnetic field in force balance with the anisotropic ring current distributions. The ring current source population is inferred from LANL geosynchronous satellite data; a superdense plasma sheet observed during the second storm main phase contributes significantly to ring current buildup. We find that the bounce-averaged velocities increase while the bounce-averaged geocoronal hydrogen densities decrease on the nightside when a nondipolar B field is used. A depression of the ring current fluxes and a confinement of the ring current close to Earth are thus observed on the nightside as geomagnetic activity increases. In contrast to the dipolar case, the proton anisotropy increases considerably in the postnoon sector, and the nondipolar simulations predict the excitation of intense EMIC waves at large L shells. The total ring current energy and vertical bar Dst vertical bar index calculated with the self-consistent B field are in best agreement with observations, being smaller compared to the dipolar calculations but larger than the empirical B field predictions.
C1 [Jordanova, V. K.; Zaharia, S.; Welling, D. T.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Jordanova, VK (reprint author), Los Alamos Natl Lab, POB 1663,MS D466, Los Alamos, NM 87545 USA.
EM vania@lanl.gov
RI Welling, Daniel/C-1970-2013; 
OI Jordanova, Vania/0000-0003-0475-8743
FU U.S. Department of Energy; NASA [NNH07AG24I, NNH08AJ01I, NNH09AL06I];
   NSF [ATM-0902941]
FX Work at Los Alamos was conducted under the auspices of the U.S.
   Department of Energy, with partial support from NASA grants NNH07AG24I,
   NNH08AJ01I, and NNH09AL06I and NSF grant ATM-0902941. The authors thank
   Steve Morley for help with LANL data processing. ACE data were provided
   by D. McComas and N. Ness through the CDAWeb at NASA. The Dst and SYM-H
   indices were provided by the World Data Center in Kyoto, Japan.
NR 60
TC 41
Z9 41
U1 0
U2 2
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0148-0227
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 8
PY 2010
VL 115
AR A00J11
DI 10.1029/2010JA015671
PG 17
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 693WL
UT WOS:000285256000003
ER

PT J
AU Lu, L
   McKenna-Lawlor, S
   Barabash, S
   Brandt, PC
   Balaz, J
   Liu, ZX
   He, ZH
   Reeves, GD
AF Lu, L.
   McKenna-Lawlor, S.
   Barabash, S.
   Brandt, P. C.
   Balaz, J.
   Liu, Z. X.
   He, Z. H.
   Reeves, G. D.
TI Comparisons between ion distributions retrieved from ENA images of the
   ring current and contemporaneous, multipoint ion measurements recorded
   in situ during the major magnetic storm of 15 May 2005
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID ENERGETIC-NEUTRAL-ATOM; DAWN-DUSK ASYMMETRY; EARTHS MAGNETOSPHERE;
   PLASMA SHEET; INSTRUMENT; DYNAMICS; CLUSTER; MODEL
AB The Neutral Atom Detector Unit (NUADU) aboard the TC-2 spacecraft recorded energetic neutral atom (ENA) image data for >3 h during part of the main and recovery phases of a major magnetic storm on 15 May 2005. A custom designed, constrained linear inversion method was applied to retrieve ring current ion distributions in the ENA records out to L = 6.6. Comparisons were then made between the ion fluxes retrieved from these ENA data (energy ranges 50-81 keV and 81-158 keV) and complementary, contemporaneous particle fluxes measured in situ by Synchronous Orbit Particle Analyzer (SOPA) instruments aboard a series of geosynchronous satellites that were launched to encircle the equatorial plane at L similar to 6.6 by the Los Alamos National Laboratory (LANL). The ENA data revealed the development of two emission peaks during the main phase of the storm which corresponded to the arrival from the magnetotail of a pair of particle injections. These injections reached, in each case, maximum value before the corresponding AL index amplitude peak was attained. The main phase of the storm concluded (Dst approximate to -256 nT) in the aftermath of this event pair, and the ring current ion fluxes thereafter gradually decayed over several hours (the storm recovery phase). This is the first time that the linear inversion method developed for NUADU data has been globally validated using multipoint in situ measurements made at different magnetic local times. It was found that the higher the derived flux values were on the duskside/nightside, the closer they were to the in situ measurements. The retrieved fluxes obtained on the duskside/nightside tended, however, to be still somewhat underestimated since the ENA measurements concerned were made around the outer edge of the ring current at an altitude where the magnetic field in the inner magnetosphere deviates from that dipole configuration assumed in the inversion procedure to pertain there. The two methods utilized to study ions during a large magnetic storm are complementary in that the retrieved ion fluxes provide high time resolution information concerning the changing, large-scale structure of ring current events, whereas in situ flux sampling presents "measurement truth" at particular locations within individual ring currents.
C1 [Lu, L.; Liu, Z. X.; He, Z. H.] Chinese Acad Sci, State Key Lab Space Weather, Ctr Space Sci & Appl Res, Beijing 100190, Peoples R China.
   [McKenna-Lawlor, S.; Balaz, J.] Natl Univ Ireland, Maynooth, Kildare, Ireland.
   [Barabash, S.] Swedish Inst Space Phys, SE-98128 Kiruna, Sweden.
   [Brandt, P. C.] Johns Hopkins Univ, Appl Phys Lab, Laurel, MD 20723 USA.
   [Balaz, J.] Inst Expt Phys, Space Phys Dept, SK-04001 Kosice, Slovakia.
   [Reeves, G. D.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Lu, L (reprint author), Chinese Acad Sci, State Key Lab Space Weather, Ctr Space Sci & Appl Res, Beijing 100190, Peoples R China.
EM luli@cssar.ac.cn
RI Reeves, Geoffrey/E-8101-2011; Brandt, Pontus/N-1218-2016; 
OI Reeves, Geoffrey/0000-0002-7985-8098; Brandt,
   Pontus/0000-0002-4644-0306; Balaz, Jan/0000-0001-8918-2610
FU Chinese National Natural Science Foundation Committee [40974100];
   Specialized Research Fund for State Key Laboratories; National Basic
   Research Program of China [2011CB811404]; Enterprise Ireland
FX This study was supported by the Chinese National Natural Science
   Foundation Committee grant 40974100, the Specialized Research Fund for
   State Key Laboratories, and National Basic Research Program of China
   (2011CB811404). S.M.L. thanks Enterprise Ireland for also supporting
   this work.
NR 25
TC 3
Z9 5
U1 1
U2 6
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0148-0227
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 8
PY 2010
VL 115
AR A12218
DI 10.1029/2010JA015770
PG 15
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 693WL
UT WOS:000285256000004
ER

PT J
AU Yavas, H
   van Veenendaal, M
   van den Brink, J
   Ament, LJP
   Alatas, A
   Leu, BM
   Apostu, MO
   Wizent, N
   Behr, G
   Sturhahn, W
   Sinn, H
   Alp, EE
AF Yavas, H.
   van Veenendaal, M.
   van den Brink, J.
   Ament, L. J. P.
   Alatas, A.
   Leu, B. M.
   Apostu, M-O
   Wizent, N.
   Behr, G.
   Sturhahn, W.
   Sinn, H.
   Alp, E. E.
TI Observation of phonons with resonant inelastic x-ray scattering
SO JOURNAL OF PHYSICS-CONDENSED MATTER
LA English
DT Article
ID COPPER-OXIDE SUPERCONDUCTORS; RAMAN-SCATTERING; SPECTROSCOPY;
   RESOLUTION; CUO
AB Phonons, the quantum mechanical representation of lattice vibrations, and their coupling to the electronic degrees of freedom are important for understanding thermal and electric properties of materials. For the first time, phonons have been measured using resonant inelastic x-ray scattering (RIXS) across the Cu K-edge in cupric oxide (CuO). Analyzing these spectra using an ultra-short core-hole lifetime approximation and exact diagonalization techniques, we can explain the essential inelastic features. The relative spectral intensities are related to the electron-phonon coupling strengths.
C1 [Yavas, H.; van Veenendaal, M.; Alatas, A.; Leu, B. M.; Sturhahn, W.; Alp, E. E.] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
   [Yavas, H.] Univ Illinois, Dept Geol, Urbana, IL 61801 USA.
   [van Veenendaal, M.] No Illinois Univ, Dept Phys, De Kalb, IL 60115 USA.
   [Ament, L. J. P.] Leiden Univ, Inst Lorentz Theoret Phys, NL-2300 RA Leiden, Netherlands.
   [van den Brink, J.] IFW Dresden, Inst Theoret Solid State Phys, D-01171 Dresden, Germany.
   [Apostu, M-O] Alexandru Ioan Cuza Univ, Fac Chem, Iasi 700506, Romania.
   [Wizent, N.; Behr, G.] Leibniz Inst Festkorper & Werkstoffforsch IFW Dre, D-01171 Dresden, Germany.
   [Wizent, N.] Kirchhoff Inst Phys, D-69120 Heidelberg, Germany.
   [Sinn, H.] European XFEL, D-22607 Hamburg, Germany.
RP Yavas, H (reprint author), Deutsch Elektronen Synchrotron DESY, D-22603 Hamburg, Germany.
EM hasan.yavas@desy.de
RI van den Brink, Jeroen/E-5670-2011; Yavas, Hasan/A-7164-2014
OI van den Brink, Jeroen/0000-0001-6594-9610; Yavas,
   Hasan/0000-0002-8940-3556
FU US Department of Energy (DOE), Office of Basic Energy Sciences, Division
   of Materials Sciences and Engineering [DE-FG02-03ER46097]; COMPRES under
   NSF [EAR 06-49658]; Computational Materials Science Network (CMSN) of
   the Division of Materials Science and Engineering, Office of Basic
   Energy Sciences (BES), US DOE [DE-FG02-08ER46540]; US DOE, Office of
   Science, Office of Basic Energy Sciences [DE-AC02-06CH11357]
FX HY acknowledges Thomas Toellner, Ayman Said, Jiyong Zhao, and Daniel
   Haskel for their help and discussions. MvV was supported by the US
   Department of Energy (DOE), Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering under Award DE-FG02-03ER46097. This
   work was partially supported by COMPRES under NSF Cooperative Agreement
   EAR 06-49658, and benefited from the RIXS collaboration supported by the
   Computational Materials Science Network (CMSN) program of the Division
   of Materials Science and Engineering, Office of Basic Energy Sciences
   (BES), US DOE under grant number DE-FG02-08ER46540. Use of the Advanced
   Photon Source was supported by the US DOE, Office of Science, Office of
   Basic Energy Sciences, under Contract No. DE-AC02-06CH11357.
NR 27
TC 15
Z9 15
U1 3
U2 32
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 0953-8984
J9 J PHYS-CONDENS MAT
JI J. Phys.-Condes. Matter
PD DEC 8
PY 2010
VL 22
IS 48
AR 485601
DI 10.1088/0953-8984/22/48/485601
PG 5
WC Physics, Condensed Matter
SC Physics
GA 684EU
UT WOS:000284533500010
PM 21406750
ER

PT J
AU Wang, WS
   Goebl, J
   He, L
   Aloni, S
   Hu, YX
   Zhen, L
   Yin, YD
AF Wang, Wenshou
   Goebl, James
   He, Le
   Aloni, Shaul
   Hu, Yongxing
   Zhen, Liang
   Yin, Yadong
TI Epitaxial Growth of Shape-Controlled Bi2Te3-Te Heterogeneous
   Nanostructures
SO JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
LA English
DT Article
ID COLLOIDAL SEMICONDUCTOR NANORODS; THERMOELECTRIC-MATERIALS; SELECTIVE
   GROWTH; QUANTUM-DOT; MAGNETIC NANOPARTICLES; NANOCRYSTAL SYNTHESIS;
   METAL NANOCRYSTALS; OPTICAL-PROPERTIES; CDSE NANORODS; TELLURIUM
AB A one-pot solution process has been devised to synthesize colloidal Bi2Te3-Te heterogeneous nanostructures (HNs) that comprise Bi2Te3 nanoplates and Te nanorods. By controlling the reaction kinetics, the reaction of TeO32- and Bi3+ in the presence of hydrazine first produces uniform Te nanorods and then grows Bi2Te3 nanoplates on the tips and surfaces of these Te nanorods, forming various shapes including "nails", "barbells", "syringes", and "accordions". The specific topological arrangement realized arises from the peculiar anisotropic reactivity of the first formed Te nanorods, whose tips are subsequently exploited to seed the heterogeneous nucleation of Bi2Te3 as enabled by the similar crystal structure and the small lattice mismatch between Te and Bi2Te3. Three important processes, heterogeneous nucleation of Bi2Te3 on the tips and/or surface of Te nanorods, homogeneous nucleation of Bi2Te3, and the direct reaction of a Bi precursor and Te nanorods to form hollow structures via the Kirkendall Effect, occur under various conditions. The manipulation of these processes provides a robust means for the fine shape control of Bi2Te3-Te HNs. It is envisioned that the tailored synthesis of Bi2Te3-Te HNs may promise unique opportunities for producing thermoelectric materials with greatly enhanced performance.
C1 [Wang, Wenshou; Goebl, James; He, Le; Hu, Yongxing; Yin, Yadong] Univ Calif Riverside, Dept Chem, Riverside, CA 92521 USA.
   [Wang, Wenshou; Zhen, Liang] Harbin Inst Technol, Sch Mat Sci & Engn, Harbin 150001, Peoples R China.
   [Aloni, Shaul] Lawrence Berkeley Lab, Mol Foundry, Berkeley, CA 94720 USA.
RP Yin, YD (reprint author), Univ Calif Riverside, Dept Chem, Riverside, CA 92521 USA.
EM yadong.yin@ucr.edu
RI Yin, Yadong/D-5987-2011; Zhen, Liang/D-9237-2011; He, Le/D-7167-2011;
   Hu, Yongxing/D-3548-2013; Wang, Wenshou/C-5579-2015
OI Yin, Yadong/0000-0003-0218-3042; Zhen, Liang/0000-0001-6159-8972; He,
   Le/0000-0002-4520-0482; Hu, Yongxing/0000-0003-2264-9356; Wang,
   Wenshou/0000-0001-7313-4403
FU U.S. National Science Foundation; Department of Energy; American
   Chemical Society; Research Corporation for Science Advancement; 3M;
   DuPont; China Scholarship Council (CSC) [20083019]; Office of Science,
   Office of Basic Energy Sciences, of the U.S. Department of Energy
   [DE-C02-05CH11231]
FX We thank the U.S. National Science Foundation, Department of Energy, and
   the Donors of the Petroleum Research Fund administered by the American
   Chemical Society, for support of this research. Yin also thanks the
   Research Corporation for Science Advancement for the Cottrell Scholar
   Award, 3M for the Nontenured Faculty Grant, and DuPont for the Young
   Professor Grant. W.W. acknowledges the fellowship support by the China
   Scholarship Council (CSC) (No. 20083019). Work at the Molecular Foundry
   was supported by the Office of Science, Office of Basic Energy Sciences,
   of the U.S. Department of Energy under Contract No. DE-C02-05CH11231.
NR 77
TC 55
Z9 55
U1 10
U2 109
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0002-7863
J9 J AM CHEM SOC
JI J. Am. Chem. Soc.
PD DEC 8
PY 2010
VL 132
IS 48
BP 17316
EP 17324
DI 10.1021/ja108186w
PG 9
WC Chemistry, Multidisciplinary
SC Chemistry
GA 691LD
UT WOS:000285080400041
PM 21080672
ER

PT J
AU Ohldag, H
   Esquinazi, P
   Arenholz, E
   Spemann, D
   Rothermel, M
   Setzer, A
   Butz, T
AF Ohldag, H.
   Esquinazi, P.
   Arenholz, E.
   Spemann, D.
   Rothermel, M.
   Setzer, A.
   Butz, T.
TI The role of hydrogen in room-temperature ferromagnetism at graphite
   surfaces
SO NEW JOURNAL OF PHYSICS
LA English
DT Article
ID SPECTROSCOPY
AB We present an x-ray dichroism study of graphite surfaces that addresses the origin and magnitude of ferromagnetism in metal-free carbon. We find that, in addition to carbon pi-states, hydrogen-mediated electronic states also exhibit a net spin polarization with significant magnetic remanence at room temperature. The observed magnetism is restricted to the top approximate to 10 nm of the irradiated sample where the average magnetization reaches similar or equal to 15 emu g(-1) at room temperature. We prove that the ferromagnetism found in metal-free untreated graphite is intrinsic and has a similar origin to that found in proton-bombarded graphite. Our findings also show that the magnetic properties of graphite surfaces, thin films or two-dimensional graphene samples can be reliably studied using soft x-ray dichroism. Fundamental new insights into the magnetic properties of carbon-based systems can thus be obtained.
C1 [Ohldag, H.] Stanford Univ, Stanford Synchrotron Radiat Lightsource, Menlo Pk, CA 94025 USA.
   [Esquinazi, P.; Spemann, D.; Rothermel, M.; Setzer, A.; Butz, T.] Univ Leipzig, Inst Expt Phys 2, D-04103 Leipzig, Germany.
   [Arenholz, E.] Lawrence Berkeley Natl Lab, Adv Light Source, Berkeley, CA 94720 USA.
RP Ohldag, H (reprint author), Stanford Univ, Stanford Synchrotron Radiat Lightsource, Menlo Pk, CA 94025 USA.
EM hohldag@stanford.edu
RI Ohldag, Hendrik/F-1009-2014; 
OI Esquinazi, Pablo/0000-0003-0649-1472
FU Department of Energy, Office of Basic Energy Sciences; University of
   California [DE-AC02-05CH11231]; DFG [DFG ES 86/16-1]
FX HO thanks Joachim Stohr and Hans-Christoph Siegmann for their support
   and stimulating discussions. SSRL and ALS are national user facilities
   supported by the Department of Energy, Office of Basic Energy Sciences.
   SSRL is operated by Stanford University and ALS is operated by the
   University of California under contract no. DE-AC02-05CH11231. The work
   at the University of Leipzig is supported by the DFG under DFG ES
   86/16-1.
NR 27
TC 63
Z9 63
U1 3
U2 30
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 1367-2630
J9 NEW J PHYS
JI New J. Phys.
PD DEC 8
PY 2010
VL 12
AR 123012
DI 10.1088/1367-2630/12/12/123012
PG 10
WC Physics, Multidisciplinary
SC Physics
GA 698GS
UT WOS:000285582800004
ER

PT J
AU Steppenbeck, D
   Deacon, AN
   Freeman, SJ
   Janssens, RVF
   Carpenter, MP
   Hoffman, CR
   Kay, BP
   Lauritsen, T
   Lister, CJ
   O'Donnell, D
   Oilier, J
   Seweryniak, D
   Smith, JF
   Spohr, KM
   Tabor, SL
   Tripathi, V
   Wady, PT
   Zhu, S
AF Steppenbeck, D.
   Deacon, A. N.
   Freeman, S. J.
   Janssens, R. V. F.
   Carpenter, M. P.
   Hoffman, C. R.
   Kay, B. P.
   Lauritsen, T.
   Lister, C. J.
   O'Donnell, D.
   Oilier, J.
   Seweryniak, D.
   Smith, J. F.
   Spohr, K. -M.
   Tabor, S. L.
   Tripathi, V.
   Wady, P. T.
   Zhu, S.
TI Cross-shell excitations in Al-30 and Si-30 at high spin
SO NUCLEAR PHYSICS A
LA English
DT Article
DE NUCLEAR REACTIONS C-14(O-18, X), E=37 MeV; measured E-gamma, I-gamma,
   (residue)gamma-, gamma gamma-coin, gamma(theta), DCO ratios using the
   Gammasphere array and Fragment Mass Analyzer, Al-30, Si-30; deduced
   levels, J, pi, multipolarities, Comparison with shell-model calculations
AB Yrast and near-yrast states in Al-30 and Si-30 have been populated to high spin with the O-18+ C-14 fusion-evaporation reaction in inverse kinematics. The level schemes for these two isobars have been extended up to J similar to 9h at 9.4 and 15.5 MeV, respectively. Their decay schemes indicate that cross-shell excitations dominate at high spin, where negative-parity structures exist. Positive-parity states are compared to the results of shell-model calculations using the USD, USDA, and USDB effective interactions. The negative-parity levels are compared to predictions of the W BP interaction and the recently-developed WBP-a Hamiltonian, by allowing 1p-1h excitations to fp-shell orbitals. The results suggest that single-neutron excitations to the 0f(7/2) orbital play a significant role at high spin. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Steppenbeck, D.; Deacon, A. N.; Freeman, S. J.; Kay, B. P.] Univ Manchester, Schuster Lab, Manchester M13 9PL, Lancs, England.
   [Janssens, R. V. F.; Carpenter, M. P.; Lauritsen, T.; Lister, C. J.; Seweryniak, D.; Zhu, S.] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Hoffman, C. R.; Tabor, S. L.; Tripathi, V.] Florida State Univ, Dept Phys, Tallahassee, FL 32306 USA.
   [O'Donnell, D.; Oilier, J.; Smith, J. F.; Spohr, K. -M.; Wady, P. T.] Univ W Scotland, Dept Phys, Paisley PA1 2BE, Renfrew, Scotland.
RP Steppenbeck, D (reprint author), RIKEN Nishina Ctr, 2-1 Hirosawa, Wako, Saitama 3510198, Japan.
EM steppenbeck@riken.jp
RI Freeman, Sean/B-1280-2010; Kay, Benjamin/F-3291-2011; O'Donnell,
   David/J-7786-2013; Carpenter, Michael/E-4287-2015
OI Freeman, Sean/0000-0001-9773-4921; Kay, Benjamin/0000-0002-7438-0208;
   O'Donnell, David/0000-0002-4710-3803; Carpenter,
   Michael/0000-0002-3237-5734
FU US Department of Energy, Office of Nuclear Physics [DE-AC02-06CH11357];
   US National Science Foundation [PHY-07-56474]; UK Science and Technology
   Facilities Council (STFC); RIKEN; STFC
FX This work was supported by the US Department of Energy, Office of
   Nuclear Physics, under Contract No. DE-AC02-06CH11357, the US National
   Science Foundation under Grant No. PHY-07-56474 and the UK Science and
   Technology Facilities Council (STFC). D. Steppenbeck and A.N. Deacon
   acknowledge financial support from RIKEN and STFC, respectively. The
   authors also thank M. Freer at the University of Birmingham for use of
   the <SUP>14</SUP>C target.
NR 43
TC 8
Z9 8
U1 0
U2 4
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0375-9474
J9 NUCL PHYS A
JI Nucl. Phys. A
PD DEC 8
PY 2010
VL 847
IS 3-4
BP 149
EP 167
DI 10.1016/j.nuclphysa.2010.07.010
PG 19
WC Physics, Nuclear
SC Physics
GA 676YM
UT WOS:000283955700002
ER

PT J
AU Argyriades, J
   Arnold, R
   Augier, C
   Baker, J
   Barabash, AS
   Basharina-Freshville, A
   Bongrand, M
   Broudin-Bay, G
   Brudanin, V
   Caffrey, AJ
   Chapon, A
   Chauveau, E
   Daraktchieva, Z
   Durand, D
   Egorov, V
   Fatemi-Ghomi, N
   Flack, R
   Guillon, B
   Hubert, P
   Jullian, S
   Kauer, M
   King, S
   Klimenko, A
   Kochetov, O
   Konovalov, SI
   Kovalenko, V
   Lalanne, D
   Lamhamdi, T
   Lang, K
   Lemiere, Y
   Longuemare, C
   Lutter, G
   Mamedov, F
   Marquet, C
   Martin-Albo, J
   Mauger, F
   Nachab, A
   Nasteva, I
   Nemchenok, I
   Nguyen, CH
   Nova, F
   Novella, P
   Ohsumi, H
   Pahlka, RB
   Perrot, F
   Piquemal, F
   Reyss, JL
   Ricol, JS
   Saakyan, R
   Sarazin, X
   Shitov, Y
   Simard, L
   Simkovic, F
   Smolnikov, A
   Snow, S
   Soldner-Rembold, S
   Stekl, I
   Suhonen, J
   Sutton, CS
   Szklarz, G
   Thomas, J
   Timkin, V
   Tretyak, VI
   Umatov, V
   Vala, L
   Vanyushin, I
   Vasiliev, V
   Vorobel, V
   Vylov, T
AF Argyriades, J.
   Arnold, R.
   Augier, C.
   Baker, J.
   Barabash, A. S.
   Basharina-Freshville, A.
   Bongrand, M.
   Broudin-Bay, G.
   Brudanin, V.
   Caffrey, A. J.
   Chapon, A.
   Chauveau, E.
   Daraktchieva, Z.
   Durand, D.
   Egorov, V.
   Fatemi-Ghomi, N.
   Flack, R.
   Guillon, B.
   Hubert, Ph.
   Jullian, S.
   Kauer, M.
   King, S.
   Klimenko, A.
   Kochetov, O.
   Konovalov, S. I.
   Kovalenko, V.
   Lalanne, D.
   Lamhamdi, T.
   Lang, K.
   Lemiere, Y.
   Longuemare, C.
   Lutter, G.
   Mamedov, F.
   Marquet, Ch.
   Martin-Albo, J.
   Mauger, F.
   Nachab, A.
   Nasteva, I.
   Nemchenok, I.
   Nguyen, C. H.
   Nova, F.
   Novella, P.
   Ohsumi, H.
   Pahlka, R. B.
   Perrot, F.
   Piquemal, F.
   Reyss, J. L.
   Ricol, J. S.
   Saakyan, R.
   Sarazin, X.
   Shitov, Yu.
   Simard, L.
   Simkovic, F.
   Smolnikov, A.
   Snow, S.
   Soeldner-Rembold, S.
   Stekl, I.
   Suhonen, J.
   Sutton, C. S.
   Szklarz, G.
   Thomas, J.
   Timkin, V.
   Tretyak, V. I.
   Umatov, V.
   Vala, L.
   Vanyushin, I.
   Vasiliev, V.
   Vorobel, V.
   Vylov, Ts.
TI Measurement of the two neutrino double beta decay half-life of Zr-96
   with the NEMO-3 detector
SO NUCLEAR PHYSICS A
LA English
DT Article
DE RADIOACTIVITY Zr-96(2 beta); measured E-beta,E- E-gamma, beta beta-,
   beta gamma-coin; deduced T-1/2 for 2 nu beta beta-decay, NEMO-3 detector
AB Using 9.4 g of Zr-96 isotope and 1221 days of data from the NEMO-3 detector corresponding (0 0.031 kg y, the obtained 2 nu beta beta decay half-life measurement is T-1/2(2 nu) = [2.35 +/- 0.14(stat) +/- 0.16(syst)] x 10(19) yr. Different characteristics of the final state electrons have been studied, such as the energy sum, individual electron energy, and angular distribution. The 2v nuclear matrix element is extracted using the measured 2 nu beta beta half-life and is M-2 nu = 0.049 +/- 0.002. Constraints on 0 nu beta beta decay have also been set. (C) 2010 Elsevier B.V. All rights reserved.
C1 [Basharina-Freshville, A.; Chapon, A.; Daraktchieva, Z.; Flack, R.; Kauer, M.; King, S.; Saakyan, R.; Thomas, J.; Vasiliev, V.] UCL, London WC1E 6BT, England.
   [Argyriades, J.; Augier, C.; Bongrand, M.; Jullian, S.; Lalanne, D.; Sarazin, X.; Simard, L.; Szklarz, G.] Univ Paris 11, LAL, CNRS IN2P3, F-91405 Orsay, France.
   [Arnold, R.; Tretyak, V. I.] Univ Strasbourg, IPHC, CNRS IN2P3, F-67037 Strasbourg, France.
   [Baker, J.; Caffrey, A. J.] Idaho Natl Lab, INL, Idaho Falls, ID 83415 USA.
   [Barabash, A. S.; Konovalov, S. I.; Umatov, V.; Vanyushin, I.] Inst Theoret & Expt Phys, ITEP, Moscow 117259, Russia.
   [Broudin-Bay, G.; Chauveau, E.; Hubert, Ph.; Lutter, G.; Marquet, Ch.; Nachab, A.; Nguyen, C. H.; Perrot, F.; Piquemal, F.; Ricol, J. S.] Ctr Etud Nucl Bordeaux Gradignan, CNRS IN2P3, UMR5797, F-33175 Gradignan, France.
   [Broudin-Bay, G.; Chauveau, E.; Hubert, Ph.; Lutter, G.; Marquet, Ch.; Nachab, A.; Nguyen, C. H.; Perrot, F.; Piquemal, F.; Ricol, J. S.] Univ Bordeaux, CENBG, UMR 5797, F-33175 Gradignan, France.
   [Brudanin, V.; Egorov, V.; Klimenko, A.; Kochetov, O.; Kovalenko, V.; Nemchenok, I.; Shitov, Yu.; Smolnikov, A.; Timkin, V.; Tretyak, V. I.; Vylov, Ts.] Joint Inst Nucl Res, JINR, Dubna 141980, Russia.
   [Fatemi-Ghomi, N.; Nasteva, I.; Snow, S.; Soeldner-Rembold, S.] Univ Manchester, Manchester M13 9PL, Lancs, England.
   [Lamhamdi, T.] Univ Sidi Mohamed Ben Abdellah, USMBA, Fes 30000, Morocco.
   [Lang, K.; Pahlka, R. B.] Univ Texas Austin, Austin, TX 78712 USA.
   [Mamedov, F.; Stekl, I.; Vala, L.] Czech Tech Univ, IEAP, CZ-12800 Prague, Czech Republic.
   [Chapon, A.; Durand, D.; Guillon, B.; Lemiere, Y.; Longuemare, C.; Mauger, F.] Univ Caen, ENSICAEN, LPC, CNRS IN2P3, F-14032 Caen, France.
   [Martin-Albo, J.; Novella, P.] Univ Valencia, CSIC, IFIC, Valencia, Spain.
   [Nova, F.] Univ Autonoma Barcelona, E-08193 Barcelona, Spain.
   [Ohsumi, H.] Saga Univ, Saga 8408502, Japan.
   [Reyss, J. L.] CNRS, LSCE, F-91190 Gif Sur Yvette, France.
   [Simkovic, F.] Comenius Univ, FMFI, SK-84248 Bratislava, Slovakia.
   [Suhonen, J.] Univ Jyvaskyla, SF-40351 Jyvaskyla, Finland.
   [Sutton, C. S.] Mt Holyoke Coll, MHC, S Hadley, MA 01075 USA.
   [Vorobel, V.] Charles Univ Prague, Fac Math & Phys, CZ-12116 Prague, Czech Republic.
   [Nguyen, C. H.] Hanoi Univ Sci, Hanoi, Vietnam.
RP Kauer, M (reprint author), UCL, Mortimer St, London WC1E 6BT, England.
EM kauer@hep.ucl.ac.uk
RI Shitov, Yuri/J-2318-2012; Nemchenok, Igor/F-9715-2014; Novella,
   Pau/K-2845-2014; Nasteva, Irina/M-8764-2014; Vala, Ladislav/L-4938-2016;
   Barabash, Alexander/S-8851-2016; 
OI Novella, Pau/0000-0002-0923-3172; Nasteva, Irina/0000-0001-7115-7214;
   Martin-Albo, Justo/0000-0002-7318-1469
FU Czech Republic; RFBR (Russia); STFC (UK); NSF (USA)
FX We thank the staff at the Modane Underground Laboratory for their
   technical assistance in running the NEMO-3 experiment and Vladimir I.
   Tretyak for providing the Monte Carlo event generator (DECAY0). We
   acknowledge support by the Grants Agencies of the Czech Republic, RFBR
   (Russia), STFC (UK), and NSF (USA).
NR 29
TC 50
Z9 50
U1 1
U2 8
PU ELSEVIER SCIENCE BV
PI AMSTERDAM
PA PO BOX 211, 1000 AE AMSTERDAM, NETHERLANDS
SN 0375-9474
EI 1873-1554
J9 NUCL PHYS A
JI Nucl. Phys. A
PD DEC 8
PY 2010
VL 847
IS 3-4
BP 168
EP 179
DI 10.1016/j.nuclphysa.2010.07.009
PG 12
WC Physics, Nuclear
SC Physics
GA 676YM
UT WOS:000283955700003
ER

PT J
AU Essig, R
   Harnik, R
   Kaplan, J
   Toro, N
AF Essig, Rouven
   Harnik, Roni
   Kaplan, Jared
   Toro, Natalia
TI Discovering new light states at neutrino experiments
SO PHYSICAL REVIEW D
LA English
DT Article
ID BEAM-DUMP EXPERIMENT; ELECTRON-BEAM; SEARCH; PARTICLES; AXIONS; DECAY;
   DETECTOR; COMPASS; BOSON
AB Experiments designed to measure neutrino oscillations also provide major opportunities for discovering very weakly-coupled states. In order to produce neutrinos, experiments such as Liquid Scintillator Neutrino Detector collide thousands of Coulombs of protons into fixed targets, while MINOS and MiniBooNE also focus and then dump beams of muons. The neutrino detectors beyond these beam dumps are therefore an excellent arena in which to look for long-lived pseudoscalars or for vector bosons that kinetically mix with the photon. We show that these experiments have significant sensitivity beyond previous beam dumps and are able to partially close the gap between laboratory experiments and supernovae constraints on pseudoscalars. Future upgrades to the NuMI beamline and Project X will lead to even greater opportunities for discovery. We also discuss thin target experiments with muon beams, such as those available in COMPASS, and show that they constitute a powerful probe for leptophilic pseudo-Nambu-Goldstones.
C1 [Essig, Rouven; Kaplan, Jared] SLAC Natl Accelerator Lab, Theory Grp, Menlo Pk, CA 94025 USA.
   [Harnik, Roni] Fermilab Natl Accelerator Lab, Dept Theoret Phys, Batavia, IL 60510 USA.
   [Toro, Natalia] Stanford Univ, Theory Grp, Stanford, CA 94305 USA.
RP Essig, R (reprint author), SLAC Natl Accelerator Lab, Theory Grp, Menlo Pk, CA 94025 USA.
EM rouven@stanford.edu; roni@fnal.gov; jaredk@slac.stanford.edu;
   ntoro@stanford.edu
FU US DOE [DE-AC02-76SF00515, DE-AC02-07CH11359]
FX We thank Philip Schuster for collaboration in early stages of this work.
   We also thank James Bjorken, Joe Lykken, Chris Polly, Geoff Mills,
   Simona Murgia, Michael Peskin, Ronald Ransome, Brian Rebel, Byron Roe,
   David Schmitz, Tomer Volansky, Jay Wacker, Hywel White, and Geralyn
   Zeller for very useful discussions. We especially want to thank William
   Louis for extensive discussions and correspondence about the LSND
   detector and publications. R. E. and J. K. are supported by the US DOE
   under contract number DE-AC02-76SF00515. Fermilab is operated by Fermi
   Research Alliance, LLC, under Contract DE-AC02-07CH11359 with the United
   States Department of Energy. We acknowledge the hospitality of the Aspen
   Center for Physics where part of this work was done.
NR 85
TC 56
Z9 56
U1 0
U2 1
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2470-0010
EI 2470-0029
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 8
PY 2010
VL 82
IS 11
AR 113008
DI 10.1103/PhysRevD.82.113008
PG 15
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DB
UT WOS:000286566100002
ER

PT J
AU Sanchez, PD
   Lees, JP
   Poireau, V
   Prencipe, E
   Tisserand, V
   Tico, JG
   Grauges, E
   Martinelli, M
   Palano, A
   Pappagallo, M
   Eigen, G
   Stugu, B
   Sun, L
   Battaglia, M
   Brown, DN
   Hooberman, B
   Kerth, LT
   Kolomensky, YG
   Lynch, G
   Osipenkov, IL
   Tanabe, T
   Hawkes, CM
   Watson, AT
   Koch, H
   Schroeder, T
   Asgeirsson, DJ
   Hearty, C
   Mattison, TS
   McKenna, JA
   Khan, A
   Randle-Conde, A
   Blinov, VE
   Buzykaev, AR
   Druzhinin, VP
   Golubev, VB
   Onuchin, AP
   Serednyakov, SI
   Skovpen, YI
   Solodov, EP
   Todyshev, KY
   Yushkov, AN
   Bondioli, M
   Curry, S
   Kirkby, D
   Lankford, AJ
   Mandelkern, M
   Martin, EC
   Stoker, DP
   Atmacan, H
   Gary, JW
   Liu, F
   Long, O
   Vitug, GM
   Campagnari, C
   Hong, TM
   Kovalskyi, D
   Richman, JD
   Eisner, AM
   Heusch, CA
   Kroseberg, J
   Lockman, WS
   Martinez, AJ
   Schalk, T
   Schumm, BA
   Seiden, A
   Winstrom, LO
   Cheng, CH
   Doll, DA
   Echenard, B
   Hitlin, DG
   Ongmongkolkul, P
   Porter, FC
   Rakitin, AY
   Andreassen, R
   Dubrovin, MS
   Mancinelli, G
   Meadows, BT
   Sokoloff, MD
   Bloom, PC
   Ford, WT
   Gaz, A
   Nagel, M
   Nauenberg, U
   Smith, JG
   Wagner, SR
   Ayad, R
   Toki, WH
   Jasper, H
   Karbach, TM
   Merkel, J
   Petzold, A
   Spaan, B
   Wacker, K
   Kobel, MJ
   Schubert, KR
   Schwierz, R
   Bernard, D
   Verderi, M
   Clark, PJ
   Playfer, S
   Watson, JE
   Andreotti, M
   Bettoni, D
   Bozzi, C
   Calabrese, R
   Cecchi, A
   Cibinetto, G
   Fioravanti, E
   Franchini, P
   Luppi, E
   Munerato, M
   Negrini, M
   Petrella, A
   Piemontese, L
   Baldini-Ferroli, R
   Calcaterra, A
   de Sangro, R
   Finocchiaro, G
   Nicolaci, M
   Pacetti, S
   Patteri, P
   Peruzzi, IM
   Piccolo, M
   Rama, M
   Zallo, A
   Contri, R
   Guido, E
   Lo Vetere, M
   Monge, MR
   Passaggio, S
   Patrignani, C
   Robutti, E
   Tosi, S
   Bhuyan, B
   Prasad, V
   Lee, CL
   Morii, M
   Adametz, A
   Marks, J
   Uwer, U
   Bernlochner, FU
   Ebert, M
   Lacker, HM
   Lueck, T
   Volk, A
   Dauncey, PD
   Tibbetts, M
   Behera, PK
   Mallik, U
   Chen, C
   Cochran, J
   Crawley, HB
   Dong, L
   Meyer, WT
   Prell, S
   Rosenberg, EI
   Rubin, AE
   Gao, YY
   Gritsan, AV
   Guo, ZJ
   Arnaud, N
   Davier, M
   Derkach, D
   da Costa, JF
   Grosdidier, G
   Le Diberder, F
   Lutz, AM
   Malaescu, B
   Perez, A
   Roudeau, P
   Schune, MH
   Serrano, J
   Sordini, V
   Stocchi, A
   Wang, L
   Wormser, G
   Lange, DJ
   Wright, DM
   Bingham, I
   Chavez, CA
   Coleman, JP
   Fry, JR
   Gabathuler, E
   Gamet, R
   Hutchcroft, DE
   Payne, DJ
   Touramanis, C
   Bevan, AJ
   Di Lodovico, F
   Sacco, R
   Sigamani, M
   Cowan, G
   Paramesvaran, S
   Wren, AC
   Brown, DN
   Davis, CL
   Denig, AG
   Fritsch, M
   Gradl, W
   Hafner, A
   Alwyn, KE
   Bailey, D
   Barlow, RJ
   Jackson, G
   Lafferty, GD
   West, TJ
   Anderson, J
   Cenci, R
   Jawahery, A
   Roberts, DA
   Simi, G
   Tuggle, JM
   Dallapiccola, C
   Salvati, E
   Cowan, R
   Dujmic, D
   Fisher, PH
   Sciolla, G
   Zhao, M
   Lindemann, D
   Patel, PM
   Robertson, SH
   Schram, M
   Biassoni, P
   Lazzaro, A
   Lombardo, V
   Palombo, F
   Stracka, S
   Cremaldi, L
   Godang, R
   Kroeger, R
   Sonnek, P
   Summers, DJ
   Nguyen, X
   Simard, M
   Taras, P
   De Nardo, G
   Monorchio, D
   Onorato, G
   Sciacca, C
   Raven, G
   Snoek, HL
   Jessop, CP
   Knoepfel, KJ
   LoSecco, JM
   Wang, WF
   Corwin, LA
   Honscheid, K
   Kass, R
   Morris, JP
   Blount, NL
   Brau, J
   Frey, R
   Igonkina, O
   Kolb, JA
   Rahmat, R
   Sinev, NB
   Strom, D
   Strube, J
   Torrence, E
   Castelli, G
   Feltresi, E
   Gagliardi, N
   Margoni, M
   Morandin, M
   Posocco, M
   Rotondo, M
   Simonetto, F
   Stroili, R
   Ben-Haim, E
   Bonneaud, GR
   Briand, H
   Calderini, G
   Chauveau, J
   Hamon, O
   Leruste, P
   Marchiori, G
   Ocariz, J
   Prendki, J
   Sitt, S
   Biasini, M
   Manoni, E
   Rossi, A
   Angelini, C
   Batignani, G
   Bettarini, S
   Carpinelli, M
   Casarosa, G
   Cervelli, A
   Forti, F
   Giorgi, MA
   Lusiani, A
   Neri, N
   Paoloni, E
   Rizzo, G
   Walsh, JJ
   Pegna, DL
   Lu, C
   Olsen, J
   Smith, AJS
   Telnov, AV
   Anulli, F
   Baracchini, E
   Cavoto, G
   Faccini, R
   Ferrarotto, F
   Ferroni, F
   Gaspero, M
   Gioi, LL
   Mazzoni, MA
   Piredda, G
   Renga, F
   Hartmann, T
   Leddig, T
   Schroder, H
   Waldi, R
   Adye, T
   Franek, B
   Olaiya, EO
   Wilson, FF
   Emery, S
   de Monchenault, GH
   Vasseur, G
   Yeche, C
   Zito, M
   Allen, MT
   Aston, D
   Bard, DJ
   Bartoldus, R
   Benitez, JF
   Cartaro, C
   Convery, MR
   Dorfan, J
   Dubois-Felsmann, GP
   Dunwoodie, W
   Field, RC
   Sevilla, MF
   Fulsom, BG
   Gabareen, AM
   Graham, MT
   Grenier, P
   Hast, C
   Innes, WR
   Kelsey, MH
   Kim, H
   Kim, P
   Kocian, ML
   Leith, DWGS
   Li, S
   Lindquist, B
   Luitz, S
   Luth, V
   Lynch, HL
   MacFarlane, DB
   Marsiske, H
   Muller, DR
   Neal, H
   Nelson, S
   O'Grady, CP
   Ofte, I
   Perl, M
   Pulliam, T
   Ratcliff, BN
   Roodman, A
   Salnikov, AA
   Santoro, V
   Schindler, RH
   Schwiening, J
   Snyder, A
   Su, D
   Sullivan, MK
   Sun, S
   Suzuki, K
   Thompson, JM
   Va'vra, J
   Wagner, AP
   Weaver, M
   West, CA
   Wisniewski, WJ
   Wittgen, M
   Wright, DH
   Wulsin, HW
   Yarritu, AK
   Young, CC
   Ziegler, V
   Chen, XR
   Park, W
   Purohit, MV
   White, RM
   Wilson, JR
   Sekula, SJ
   Bellis, M
   Burchat, PR
   Edwards, AJ
   Miyashita, TS
   Ahmed, S
   Alam, MS
   Ernst, JA
   Pan, B
   Saeed, MA
   Zain, SB
   Guttman, N
   Soffer, A
   Lund, P
   Spanier, SM
   Eckmann, R
   Ritchie, JL
   Ruland, AM
   Schilling, CJ
   Schwitters, RF
   Wray, BC
   Izen, JM
   Lou, XC
   Bianchi, F
   Gamba, D
   Pelliccioni, M
   Bomben, M
   Lanceri, L
   Vitale, L
   Lopez-March, N
   Martinez-Vidal, F
   Milanes, DA
   Oyanguren, A
   Albert, J
   Banerjee, S
   Choi, HHF
   Hamano, K
   King, GJ
   Kowalewski, R
   Lewczuk, MJ
   Nugent, IM
   Roney, JM
   Sobie, RJ
   Gershon, TJ
   Harrison, PF
   Latham, TE
   Puccio, EMT
   Band, HR
   Dasu, S
   Flood, KT
   Pan, Y
   Prepost, R
   Vuosalo, CO
   Wu, SL
AF Sanchez, P. del Amo
   Lees, J. P.
   Poireau, V.
   Prencipe, E.
   Tisserand, V.
   Tico, J. Garra
   Grauges, E.
   Martinelli, M.
   Palano, A.
   Pappagallo, M.
   Eigen, G.
   Stugu, B.
   Sun, L.
   Battaglia, M.
   Brown, D. N.
   Hooberman, B.
   Kerth, L. T.
   Kolomensky, Yu G.
   Lynch, G.
   Osipenkov, I. L.
   Tanabe, T.
   Hawkes, C. M.
   Watson, A. T.
   Koch, H.
   Schroeder, T.
   Asgeirsson, D. J.
   Hearty, C.
   Mattison, T. S.
   McKenna, J. A.
   Khan, A.
   Randle-Conde, A.
   Blinov, V. E.
   Buzykaev, A. R.
   Druzhinin, V. P.
   Golubev, V. B.
   Onuchin, A. P.
   Serednyakov, S. I.
   Skovpen, Yu I.
   Solodov, E. P.
   Todyshev, K. Yu
   Yushkov, A. N.
   Bondioli, M.
   Curry, S.
   Kirkby, D.
   Lankford, A. J.
   Mandelkern, M.
   Martin, E. C.
   Stoker, D. P.
   Atmacan, H.
   Gary, J. W.
   Liu, F.
   Long, O.
   Vitug, G. M.
   Campagnari, C.
   Hong, T. M.
   Kovalskyi, D.
   Richman, J. D.
   Eisner, A. M.
   Heusch, C. A.
   Kroseberg, J.
   Lockman, W. S.
   Martinez, A. J.
   Schalk, T.
   Schumm, B. A.
   Seiden, A.
   Winstrom, L. O.
   Cheng, C. H.
   Doll, D. A.
   Echenard, B.
   Hitlin, D. G.
   Ongmongkolkul, P.
   Porter, F. C.
   Rakitin, A. Y.
   Andreassen, R.
   Dubrovin, M. S.
   Mancinelli, G.
   Meadows, B. T.
   Sokoloff, M. D.
   Bloom, P. C.
   Ford, W. T.
   Gaz, A.
   Nagel, M.
   Nauenberg, U.
   Smith, J. G.
   Wagner, S. R.
   Ayad, R.
   Toki, W. H.
   Jasper, H.
   Karbach, T. M.
   Merkel, J.
   Petzold, A.
   Spaan, B.
   Wacker, K.
   Kobel, M. J.
   Schubert, K. R.
   Schwierz, R.
   Bernard, D.
   Verderi, M.
   Clark, P. J.
   Playfer, S.
   Watson, J. E.
   Andreotti, M.
   Bettoni, D.
   Bozzi, C.
   Calabrese, R.
   Cecchi, A.
   Cibinetto, G.
   Fioravanti, E.
   Franchini, P.
   Luppi, E.
   Munerato, M.
   Negrini, M.
   Petrella, A.
   Piemontese, L.
   Baldini-Ferroli, R.
   Calcaterra, A.
   de Sangro, R.
   Finocchiaro, G.
   Nicolaci, M.
   Pacetti, S.
   Patteri, P.
   Peruzzi, I. M.
   Piccolo, M.
   Rama, M.
   Zallo, A.
   Contri, R.
   Guido, E.
   Lo Vetere, M.
   Monge, M. R.
   Passaggio, S.
   Patrignani, C.
   Robutti, E.
   Tosi, S.
   Bhuyan, B.
   Prasad, V.
   Lee, C. L.
   Morii, M.
   Adametz, A.
   Marks, J.
   Uwer, U.
   Bernlochner, F. U.
   Ebert, M.
   Lacker, H. M.
   Lueck, T.
   Volk, A.
   Dauncey, P. D.
   Tibbetts, M.
   Behera, P. K.
   Mallik, U.
   Chen, C.
   Cochran, J.
   Crawley, H. B.
   Dong, L.
   Meyer, W. T.
   Prell, S.
   Rosenberg, E. I.
   Rubin, A. E.
   Gao, Y. Y.
   Gritsan, A. V.
   Guo, Z. J.
   Arnaud, N.
   Davier, M.
   Derkach, D.
   da Costa, J. Firmino
   Grosdidier, G.
   Le Diberder, F.
   Lutz, A. M.
   Malaescu, B.
   Perez, A.
   Roudeau, P.
   Schune, M. H.
   Serrano, J.
   Sordini, V.
   Stocchi, A.
   Wang, L.
   Wormser, G.
   Lange, D. J.
   Wright, D. M.
   Bingham, I.
   Chavez, C. A.
   Coleman, J. P.
   Fry, J. R.
   Gabathuler, E.
   Gamet, R.
   Hutchcroft, D. E.
   Payne, D. J.
   Touramanis, C.
   Bevan, A. J.
   Di Lodovico, F.
   Sacco, R.
   Sigamani, M.
   Cowan, G.
   Paramesvaran, S.
   Wren, A. C.
   Brown, D. N.
   Davis, C. L.
   Denig, A. G.
   Fritsch, M.
   Gradl, W.
   Hafner, A.
   Alwyn, K. E.
   Bailey, D.
   Barlow, R. J.
   Jackson, G.
   Lafferty, G. D.
   West, T. J.
   Anderson, J.
   Cenci, R.
   Jawahery, A.
   Roberts, D. A.
   Simi, G.
   Tuggle, J. M.
   Dallapiccola, C.
   Salvati, E.
   Cowan, R.
   Dujmic, D.
   Fisher, P. H.
   Sciolla, G.
   Zhao, M.
   Lindemann, D.
   Patel, P. M.
   Robertson, S. H.
   Schram, M.
   Biassoni, P.
   Lazzaro, A.
   Lombardo, V.
   Palombo, F.
   Stracka, S.
   Cremaldi, L.
   Godang, R.
   Kroeger, R.
   Sonnek, P.
   Summers, D. J.
   Nguyen, X.
   Simard, M.
   Taras, P.
   De Nardo, G.
   Monorchio, D.
   Onorato, G.
   Sciacca, C.
   Raven, G.
   Snoek, H. L.
   Jessop, C. P.
   Knoepfel, K. J.
   LoSecco, J. M.
   Wang, W. F.
   Corwin, L. A.
   Honscheid, K.
   Kass, R.
   Morris, J. P.
   Blount, N. L.
   Brau, J.
   Frey, R.
   Igonkina, O.
   Kolb, J. A.
   Rahmat, R.
   Sinev, N. B.
   Strom, D.
   Strube, J.
   Torrence, E.
   Castelli, G.
   Feltresi, E.
   Gagliardi, N.
   Margoni, M.
   Morandin, M.
   Posocco, M.
   Rotondo, M.
   Simonetto, F.
   Stroili, R.
   Ben-Haim, E.
   Bonneaud, G. R.
   Briand, H.
   Calderini, G.
   Chauveau, J.
   Hamon, O.
   Leruste, Ph
   Marchiori, G.
   Ocariz, J.
   Prendki, J.
   Sitt, S.
   Biasini, M.
   Manoni, E.
   Rossi, A.
   Angelini, C.
   Batignani, G.
   Bettarini, S.
   Carpinelli, M.
   Casarosa, G.
   Cervelli, A.
   Forti, F.
   Giorgi, M. A.
   Lusiani, A.
   Neri, N.
   Paoloni, E.
   Rizzo, G.
   Walsh, J. J.
   Pegna, D. Lopes
   Lu, C.
   Olsen, J.
   Smith, A. J. S.
   Telnov, A. V.
   Anulli, F.
   Baracchini, E.
   Cavoto, G.
   Faccini, R.
   Ferrarotto, F.
   Ferroni, F.
   Gaspero, M.
   Gioi, L. Li
   Mazzoni, M. A.
   Piredda, G.
   Renga, F.
   Hartmann, T.
   Leddig, T.
   Schroeder, H.
   Waldi, R.
   Adye, T.
   Franek, B.
   Olaiya, E. O.
   Wilson, F. F.
   Emery, S.
   de Monchenault, G. Hamel
   Vasseur, G.
   Yeche, Ch
   Zito, M.
   Allen, M. T.
   Aston, D.
   Bard, D. J.
   Bartoldus, R.
   Benitez, J. F.
   Cartaro, C.
   Convery, M. R.
   Dorfan, J.
   Dubois-Felsmann, G. P.
   Dunwoodie, W.
   Field, R. C.
   Sevilla, M. Franco
   Fulsom, B. G.
   Gabareen, A. M.
   Graham, M. T.
   Grenier, P.
   Hast, C.
   Innes, W. R.
   Kelsey, M. H.
   Kim, H.
   Kim, P.
   Kocian, M. L.
   Leith, D. W. G. S.
   Li, S.
   Lindquist, B.
   Luitz, S.
   Luth, V.
   Lynch, H. L.
   MacFarlane, D. B.
   Marsiske, H.
   Muller, D. R.
   Neal, H.
   Nelson, S.
   O'Grady, C. P.
   Ofte, I.
   Perl, M.
   Pulliam, T.
   Ratcliff, B. N.
   Roodman, A.
   Salnikov, A. A.
   Santoro, V.
   Schindler, R. H.
   Schwiening, J.
   Snyder, A.
   Su, D.
   Sullivan, M. K.
   Sun, S.
   Suzuki, K.
   Thompson, J. M.
   Va'vra, J.
   Wagner, A. P.
   Weaver, M.
   West, C. A.
   Wisniewski, W. J.
   Wittgen, M.
   Wright, D. H.
   Wulsin, H. W.
   Yarritu, A. K.
   Young, C. C.
   Ziegler, V.
   Chen, X. R.
   Park, W.
   Purohit, M. V.
   White, R. M.
   Wilson, J. R.
   Sekula, S. J.
   Bellis, M.
   Burchat, P. R.
   Edwards, A. J.
   Miyashita, T. S.
   Ahmed, S.
   Alam, M. S.
   Ernst, J. A.
   Pan, B.
   Saeed, M. A.
   Zain, S. B.
   Guttman, N.
   Soffer, A.
   Lund, P.
   Spanier, S. M.
   Eckmann, R.
   Ritchie, J. L.
   Ruland, A. M.
   Schilling, C. J.
   Schwitters, R. F.
   Wray, B. C.
   Izen, J. M.
   Lou, X. C.
   Bianchi, F.
   Gamba, D.
   Pelliccioni, M.
   Bomben, M.
   Lanceri, L.
   Vitale, L.
   Lopez-March, N.
   Martinez-Vidal, F.
   Milanes, D. A.
   Oyanguren, A.
   Albert, J.
   Banerjee, Sw
   Choi, H. H. F.
   Hamano, K.
   King, G. J.
   Kowalewski, R.
   Lewczuk, M. J.
   Nugent, I. M.
   Roney, J. M.
   Sobie, R. J.
   Gershon, T. J.
   Harrison, P. F.
   Latham, T. E.
   Puccio, E. M. T.
   Band, H. R.
   Dasu, S.
   Flood, K. T.
   Pan, Y.
   Prepost, R.
   Vuosalo, C. O.
   Wu, S. L.
CA BaBar Collaboration
TI Search for the rare decay B -> Kv(v)over-bar
SO PHYSICAL REVIEW D
LA English
DT Article
AB We present a search for the rare decays B+ -> K+ v (v) over bar and B-0 -> K-0 v (v) over bar using 459 x 10(6) B (B) over bar pairs collected with the BABAR detector at the SLAC National Accelerator Laboratory. Flavor-changing neutral-current decays such as these are forbidden at tree level but can occur through one-loop diagrams in the standard model (SM), with possible contributions from new physics at the same order. The presence of two neutrinos in the final state makes identification of signal events challenging, so reconstruction in the semileptonic decay channels B -> D-(*) lv of the B meson recoiling from the signal B is used to suppress backgrounds. We set an upper limit at the 90% confidence level (CL) of 1.3 x 10(-5) on the total branching fraction for B+ -> K+ v (v) over bar, and 5.6 x 10(-5) for B-0 -> K-0 v (v) over bar. We additionally report 90% CL upper limits on partial branching fractions in two ranges of dineutrino mass squared for B+ -> K+ v (v) over bar.
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   [Pegna, D. Lopes; Lu, C.; Olsen, J.; Smith, A. J. S.; Telnov, A. V.] Princeton Univ, Princeton, NJ 08544 USA.
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RP Sanchez, PD (reprint author), Univ Savoie, CNRS, IN2P3, LAPP, F-74941 Annecy Le Vieux, France.
RI Martinez Vidal, F*/L-7563-2014; Kolomensky, Yury/I-3510-2015; Lo Vetere,
   Maurizio/J-5049-2012; Lusiani, Alberto/N-2976-2015; Morandin,
   Mauro/A-3308-2016; Lusiani, Alberto/A-3329-2016; Stracka,
   Simone/M-3931-2015; Di Lodovico, Francesca/L-9109-2016; Pappagallo,
   Marco/R-3305-2016; Calcaterra, Alessandro/P-5260-2015; Frey,
   Raymond/E-2830-2016; Neri, Nicola/G-3991-2012; Forti,
   Francesco/H-3035-2011; Rotondo, Marcello/I-6043-2012; Calabrese,
   Roberto/G-4405-2015; de Sangro, Riccardo/J-2901-2012; Saeed, Mohammad
   Alam/J-7455-2012; Negrini, Matteo/C-8906-2014; Patrignani,
   Claudia/C-5223-2009; Monge, Maria Roberta/G-9127-2012; Oyanguren,
   Arantza/K-6454-2014; Luppi, Eleonora/A-4902-2015; White,
   Ryan/E-2979-2015
OI Martinez Vidal, F*/0000-0001-6841-6035; Kolomensky,
   Yury/0000-0001-8496-9975; Lo Vetere, Maurizio/0000-0002-6520-4480;
   Lusiani, Alberto/0000-0002-6876-3288; Morandin,
   Mauro/0000-0003-4708-4240; Lusiani, Alberto/0000-0002-6876-3288;
   Stracka, Simone/0000-0003-0013-4714; Di Lodovico,
   Francesca/0000-0003-3952-2175; Pappagallo, Marco/0000-0001-7601-5602;
   Calcaterra, Alessandro/0000-0003-2670-4826; Frey,
   Raymond/0000-0003-0341-2636; Neri, Nicola/0000-0002-6106-3756; Forti,
   Francesco/0000-0001-6535-7965; Rotondo, Marcello/0000-0001-5704-6163;
   Calabrese, Roberto/0000-0002-1354-5400; de Sangro,
   Riccardo/0000-0002-3808-5455; Saeed, Mohammad Alam/0000-0002-3529-9255;
   Negrini, Matteo/0000-0003-0101-6963; Patrignani,
   Claudia/0000-0002-5882-1747; Monge, Maria Roberta/0000-0003-1633-3195;
   Oyanguren, Arantza/0000-0002-8240-7300; Luppi,
   Eleonora/0000-0002-1072-5633; White, Ryan/0000-0003-3589-5900
FU BABAR; U.S. Department of Energy; National Science Foundation; Natural
   Sciences and Engineering Research Council (Canada); Commissariat a
   l'Energie Atomique and Institut National de Physique Nucleaire et de
   Physique des Particules (France); Bundesministerium fur Bildung und
   Forschung and Deutsche Forschungsgemeinschaft (Germany); Istituto
   Nazionale di Fisica Nucleare (Italy); Foundation for Fundamental
   Research on Matter (The Netherlands); Research Council of Norway;
   Ministry of Education and Science of the Russian Federation, Ministerio
   de Ciencia e Innovacion (Spain); Science and Technology Facilities
   Council (United Kingdom); Marie-Curie IEF program (European Union); A.
   P. Sloan Foundation (USA); Binational Science Foundation (USA-Israel)
FX We are grateful for the extraordinary contributions of our PEP-II
   colleagues in achieving the excellent luminosity and machine conditions
   that have made this work possible. The success of this project also
   relies critically on the expertise and dedication of the computing
   organizations that support BABAR. The collaborating institutions wish to
   thank SLAC for its support and the kind hospitality extended to them.
   This work is supported by the U.S. Department of Energy and National
   Science Foundation, the Natural Sciences and Engineering Research
   Council (Canada), the Commissariat a l'Energie Atomique and Institut
   National de Physique Nucleaire et de Physique des Particules (France),
   the Bundesministerium fur Bildung und Forschung and Deutsche
   Forschungsgemeinschaft (Germany), the Istituto Nazionale di Fisica
   Nucleare (Italy), the Foundation for Fundamental Research on Matter (The
   Netherlands), the Research Council of Norway, the Ministry of Education
   and Science of the Russian Federation, Ministerio de Ciencia e
   Innovacion (Spain), and the Science and Technology Facilities Council
   (United Kingdom). Individuals have received support from the Marie-Curie
   IEF program (European Union), the A. P. Sloan Foundation (USA) and the
   Binational Science Foundation (USA-Israel).
NR 19
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U1 1
U2 10
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2470-0010
EI 2470-0029
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 8
PY 2010
VL 82
IS 11
AR 112002
DI 10.1103/PhysRevD.82.112002
PG 10
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711DB
UT WOS:000286566100001
ER

PT J
AU Christ, NH
   Dawson, C
   Izubuchi, T
   Jung, C
   Liu, Q
   Mawhinney, RD
   Sachrajda, CT
   Soni, A
   Zhou, R
AF Christ, N. H.
   Dawson, C.
   Izubuchi, T.
   Jung, C.
   Liu, Q.
   Mawhinney, R. D.
   Sachrajda, C. T.
   Soni, A.
   Zhou, R.
CA RBC Collaboration
   UKQCD Collaboration
TI eta and eta ' Mesons from Lattice QCD
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
AB The large mass of the ninth pseudoscalar meson, the eta', is believed to arise from the combined effects of the axial anomaly and the gauge field topology present in QCD. We report a realistic, 2 + 1-flavor, lattice QCD calculation of the eta and eta' masses and mixing which confirms this picture. The physical eigenstates show small octet-singlet mixing with a mixing angle of theta = -14.1(2.8)degrees. Extrapolation to the physical light quark mass gives, with statistical errors only, m(eta) = 573(6) MeV and m(eta') = 947(142) MeV, consistent with the experimental values of 548 and 958 MeV.
C1 [Christ, N. H.; Liu, Q.; Mawhinney, R. D.] Columbia Univ, Dept Phys, New York, NY 10027 USA.
   [Dawson, C.] Univ Virginia, Dept Phys, Charlottesville, VA 22904 USA.
   [Izubuchi, T.] Brookhaven Natl Lab, RIKEN BNL Res Ctr, Upton, NY 11973 USA.
   [Sachrajda, C. T.] Univ Southampton, Sch Phys & Astron, Southampton SO17 1BJ, Hants, England.
   [Zhou, R.] Univ Connecticut, Dept Phys, Storrs, CT 06269 USA.
RP Christ, NH (reprint author), Columbia Univ, Dept Phys, 538 W 120th St, New York, NY 10027 USA.
RI zhou, ran/O-6309-2014
OI zhou, ran/0000-0002-0640-1820
FU STFC [ST/G000557/1]; EU [MRTN-CT-2006-035482]; U.S. DOE
   [DE-AC02-98CH10886, DE-FG02-92ER40699]; JSPS [19740134, 22540301]
FX We thank our RBC/UKQCD collaborators for many helpful ideas and BNL, the
   University of Edinburgh, PPARC, and RIKEN for providing the facilities
   on which this work was performed. This work was supported by STFC Grant
   No. ST/G000557/1, EU Contract No. MRTN-CT-2006-035482 (Flavianet), U.S.
   DOE Grants No. DE-AC02-98CH10886 and No. DE-FG02-92ER40699, and JSPS
   Grant-in-Aid No. 19740134 and No. 22540301.
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 8
PY 2010
VL 105
IS 24
AR 241601
DI 10.1103/PhysRevLett.105.241601
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713NP
UT WOS:000286745000002
PM 21231518
ER

PT J
AU Findeisen, F
   Minor, DL
AF Findeisen, Felix
   Minor, Daniel L., Jr.
TI Structural Basis for the Differential Effects of CaBP1 and Calmodulin on
   Ca(v)1.2 Calcium-Dependent Inactivation
SO STRUCTURE
LA English
DT Article
ID VISININ-LIKE PROTEIN-2; AUDITORY HAIR-CELLS; GATED CA2+ CHANNELS;
   BINDING PROTEINS; CA2+-DEPENDENT INACTIVATION; CA2+-BINDING PROTEIN-1;
   CA(V)2.1 CHANNELS; CRYSTAL-STRUCTURE; LIGAND-BINDING; BETA-SUBUNIT
AB Calcium-binding protein 1 (CaBP1), a calmodulin (CaM) homolog, endows certain voltage-gated calcium channels (Gays) with unusual properties. CaBP1 inhibits Ca(v)1.2 calcium-dependent inactivation (CDI) and introduces calcium-dependent facilitation (CDF). Here, we show that the ability of CaBP1 to inhibit Ca(v)1.2 CDI and induce CDF arises from interaction between the CaBP1 N-lobe and interlobe linker residue Glu94. Unlike CaM, where functional EF hands are essential for channel modulation, CD, inhibition does not require functional CaBP1 EF hands. Furthermore, CaBP1-mediated CDF has different molecular requirements than CaM-mediated CDF. Overall, the data show that CaBP1 comprises two structural modules having separate functions: similar to CaM, the CaBP1 C-lobe serves as a high-affinity anchor that binds the Ca(v)1.2 IQ domain at a site that overlaps with the Ca2+/CaM C-lobe site, whereas the N-lobe/linker module houses the elements required for channel modulation. Discovery of this division provides the framework for understanding how CaBP1 regulates Ca(v)s.
C1 [Findeisen, Felix; Minor, Daniel L., Jr.] Univ Calif San Francisco, Cardiovasc Res Inst, San Francisco, CA 94158 USA.
   [Findeisen, Felix; Minor, Daniel L., Jr.] Univ Calif San Francisco, Calif Inst Quantitat Biomed Res, San Francisco, CA 94158 USA.
   [Minor, Daniel L., Jr.] Univ Calif San Francisco, Dept Biochem & Biophys, San Francisco, CA 94158 USA.
   [Minor, Daniel L., Jr.] Univ Calif San Francisco, Dept Cellular & Mol Pharmacol, San Francisco, CA 94158 USA.
   [Minor, Daniel L., Jr.] Univ Calif Berkeley, Lawrence Berkeley Lab, Phys Biosci Sci Div, Berkeley, CA 94720 USA.
RP Minor, DL (reprint author), Univ Calif San Francisco, Cardiovasc Res Inst, San Francisco, CA 94158 USA.
EM daniel.minor@ucsf.edu
FU NIH-NHLBI [R01-HL080050]; American Heart Association [0740019N];
   American Heart Association
FX This work was supported by grants to D.L.M. (NIH-NHLBI R01-HL080050 and
   the American Heart Association 0740019N) and to F.F. from the American
   Heart Association. We thank A. Lee for the CaBP1 clone; D. Palanivelu,
   A. Tolia, and F. Van Petegem for manuscript comments; and J. Holton at
   ALS Beamline 8.3.1 for data collection assistance. D.L.M. is an AHA
   Established Investigator.
NR 63
TC 30
Z9 31
U1 0
U2 3
PU CELL PRESS
PI CAMBRIDGE
PA 600 TECHNOLOGY SQUARE, 5TH FLOOR, CAMBRIDGE, MA 02139 USA
SN 0969-2126
J9 STRUCTURE
JI Structure
PD DEC 8
PY 2010
VL 18
IS 12
BP 1617
EP 1631
DI 10.1016/j.str.2010.09.012
PG 15
WC Biochemistry & Molecular Biology; Biophysics; Cell Biology
SC Biochemistry & Molecular Biology; Biophysics; Cell Biology
GA 693JT
UT WOS:000285221100010
PM 21134641
ER

PT J
AU Freeman, MM
   Seaman, MS
   Rits-Volloch, S
   Hong, XG
   Kao, CY
   Ho, DD
   Chen, B
AF Freeman, Michael M.
   Seaman, Michael S.
   Rits-Volloch, Sophia
   Hong, Xinguo
   Kao, Chia-Ying
   Ho, David D.
   Chen, Bing
TI Crystal Structure of HIV-1 Primary Receptor CD4 in Complex with a Potent
   Antiviral Antibody
SO STRUCTURE
LA English
DT Article
ID IMMUNODEFICIENCY-VIRUS TYPE-1; ANTI-CD4 MONOCLONAL-ANTIBODY; SCATTERING
   DATA-ANALYSIS; NEUTRALIZING ANTIBODIES; ANTIRETROVIRAL ACTIVITY;
   ENVELOPE GLYCOPROTEINS; ATOMIC-STRUCTURE; RHESUS-MONKEYS; FC-RECEPTORS;
   INFECTION
AB lbalizumab is a humanized, anti-CD4 monoclonal antibody. It potently blocks HIV-1 infection and targets an epitope in the second domain of CD4 without interfering with immune functions mediated by interaction of CD4 with major histocompatibility complex (MHC) class II molecules. We report here the crystal structure of ibalizumab Fab fragment in complex with the first two domains (D1-D2) of CD4 at 2.2 angstrom resolution. lbalizumab grips CD4 primarily by the BC-loop (residues 121-125) of D2, sitting on the opposite side of gp120 and MHC-II binding sites. No major conformational change in CD4 accompanies binding to ibalizumab. Both monovalent and bivalent forms of ibalizumab effectively block viral infection, suggesting that it does not need to crosslink CD4 to exert antiviral activity. While gp120-induced structural rearrangements in CD4 are probably minimal, CD4 structural rigidity is dispensable for ibalizumab inhibition. These results could guide CD4-based immunogen design and lead to a better understanding of HIV-1 entry.
C1 [Freeman, Michael M.; Rits-Volloch, Sophia; Chen, Bing] Harvard Univ, Sch Med, Div Mol Med, Childrens Hosp, Boston, MA 02115 USA.
   [Freeman, Michael M.; Rits-Volloch, Sophia; Chen, Bing] Harvard Univ, Sch Med, Dept Pediat, Boston, MA 02115 USA.
   [Seaman, Michael S.] Beth Israel Deaconess Med Ctr, Div Viral Pathogenesis, Boston, MA 02115 USA.
   [Hong, Xinguo] Brookhaven Natl Lab, Upton, NY 11973 USA.
   [Kao, Chia-Ying; Ho, David D.] Rockefeller Univ, Aaron Diamond AIDS Res Ctr, New York, NY 10016 USA.
RP Chen, B (reprint author), Harvard Univ, Sch Med, Div Mol Med, Childrens Hosp, 3 Blackfan Circle, Boston, MA 02115 USA.
EM bchen@crystal.harvard.edu
FU NIH [GM083680, AI084794]; Bill and Melinda Gates Foundation
   Comprehensive Antibody Vaccine Immune Monitoring Consortium [38619];
   U.S. Department of Energy, Office of Science, Office of Biological and
   Environmental Research
FX We thank Stephen Harrison, Andrea Carfi, Gary Frey, Hanqin Peng, Uhn-Soo
   Cho, and Yaoxing Huang for generous advice and assistance, the staff of
   the Northeastern Collaborative Access Team at Advanced Photon Source,
   Argonne National Laboratory for assistance with x-ray data collection
   and the staff at the National Synchrotron Light Source, Brookhaven
   National Laboratory for assistance with SAXS data collection. We
   acknowledge support from NIH grants GM083680 (to B.C.) and AI084794 (to
   B.C. and Dan Barouch), and the Bill and Melinda Gates Foundation
   Comprehensive Antibody Vaccine Immune Monitoring Consortium Grant 38619
   (to M.S.S.). X.H. was partially supported by the Genomics Science
   Program, U.S. Department of Energy, Office of Science, Office of
   Biological and Environmental Research.
NR 52
TC 28
Z9 28
U1 0
U2 4
PU CELL PRESS
PI CAMBRIDGE
PA 600 TECHNOLOGY SQUARE, 5TH FLOOR, CAMBRIDGE, MA 02139 USA
SN 0969-2126
J9 STRUCTURE
JI Structure
PD DEC 8
PY 2010
VL 18
IS 12
BP 1632
EP 1641
DI 10.1016/j.str.2010.09.017
PG 10
WC Biochemistry & Molecular Biology; Biophysics; Cell Biology
SC Biochemistry & Molecular Biology; Biophysics; Cell Biology
GA 693JT
UT WOS:000285221100011
PM 21134642
ER

PT J
AU Marcet, S
   Ouellet-Plamondon, C
   Ethier-Majcher, G
   Saint-Jean, P
   Andre, R
   Klem, JF
   Francoeur, S
AF Marcet, S.
   Ouellet-Plamondon, C.
   Ethier-Majcher, G.
   Saint-Jean, P.
   Andre, R.
   Klem, J. F.
   Francoeur, S.
TI Charged excitons and biexcitons bound to isoelectronic centers
SO PHYSICAL REVIEW B
LA English
DT Article
ID QUANTUM-DOT; NITROGEN PAIRS; ZNSE-EPILAYERS; SPIN; GAAS; GAP;
   PHOTOLUMINESCENCE; SYMMETRY; ACCEPTOR; PHOTONS
AB We demonstrate that the singular binding mechanism characterizing isoelectronic centers formed from two isoelectronic traps can also bind, in addition to the well-studied excitons, various number of charges. Using the emission fine structure of Te dyads in ZnSe and N dyads in GaAs, we establish that these pseudodonors and pseudoacceptors can bind positively and negatively charged excitons, respectively, and that both can bind biexcitons. This ability to bind various charge configurations, in addition to their very low inhomogeneous broadenings and perfectly defined symmetries, further establishes isoelectronic centers as an interesting alternative to epitaxial quantum dots for a number of applications.
C1 [Marcet, S.; Ouellet-Plamondon, C.; Ethier-Majcher, G.; Saint-Jean, P.; Francoeur, S.] Ecole Polytech, Dept Genie Phys, Montreal, PQ H3C 3A7, Canada.
   [Andre, R.] Univ Grenoble 1, CNRS, CEA, Nanophys & Semicond Grp,Inst Neel, F-38042 Grenoble, France.
   [Klem, J. F.] Sandia Natl Labs, Albuquerque, NM 87185 USA.
RP Marcet, S (reprint author), Ecole Polytech, Dept Genie Phys, Montreal, PQ H3C 3A7, Canada.
EM sebastien.francoeur@polymtl.ca
RI Francoeur, Sebastien/E-6614-2011; Andre, Regis/M-4629-2014
OI Francoeur, Sebastien/0000-0002-6129-7026; Andre,
   Regis/0000-0003-3035-4291
FU U.S. Department of Energy's National Nuclear Security Administration
   [DE-AC04-94AL85000]
FX The authors would like to acknowledge Sandia National Laboratories, a
   multiprogram laboratory managed and operated by Sandia Corporation, a
   wholly owned subsidiary of Lockheed Martin Corporation, for the U.S.
   Department of Energy's National Nuclear Security Administration under
   Contract No. DE-AC04-94AL85000.
NR 33
TC 10
Z9 10
U1 0
U2 5
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 7
PY 2010
VL 82
IS 23
AR 235311
DI 10.1103/PhysRevB.82.235311
PG 5
WC Physics, Condensed Matter
SC Physics
GA 713WD
UT WOS:000286767200001
ER

PT J
AU Taylor, CD
AF Taylor, Christopher D.
TI Characterizing electronic structure motifs in beta-UH3
SO PHYSICAL REVIEW B
LA English
DT Article
ID BRILLOUIN-ZONE INTEGRATIONS; HYDROGEN-URANIUM SYSTEM; HYDRIDE
AB Density-functional theory was used to evaluate the electronic structure of beta-UH3 over a range of unit-cell volumes. Using population analysis methods (projection and topological) the magnetic and electronic structure were probed. It was found that the topological analysis led to the description of the beta-UH3 crystal as partially ionic, with delocalization of electrons running across the U-U bonds that form one-dimensional chains in the (100), (010), and (001) directions. Magnetic moments were divided into delocalized (itinerant) moments running along the chains of the crystal, and localized moments, for the U atoms sited at the bcc sites. The experimental observation regarding the identical magnetic properties for the two distinct sites was shown to result from a coincidence in the moments and electronic configurations of the uranium atoms obtained at the equilibrium volume whereas these properties diverged at higher and lower cell volumes. The electronic structure was interpreted in terms of three primary categories of orbital overlap: U-U of the dissimilar sites, U-U of the chain sites, and U-H effects, each having separate volume dependencies. Analysis of the magnetovolumetric properties of alpha-UH3, in which U-U bonding at the chain sites does not occur, shows features that support this analysis.
C1 [Taylor, Christopher D.] Los Alamos Natl Lab, Mat Sci & Technol Div, Los Alamos, NM 87545 USA.
RP Taylor, CD (reprint author), Los Alamos Natl Lab, Mat Sci & Technol Div, Mail Stop G755, Los Alamos, NM 87545 USA.
OI Taylor, Christopher/0000-0002-0252-0988
FU Los Alamos National Laboratory; National Nuclear Security Administration
   of the U.S. Department of Energy [DE-AC52-06NA25396]
FX The author gratefully acknowledges helpful discussions with R. S.
   Lillard, J. L. Smith, and R. K. Schulze at Los Alamos National
   Laboratory. We also acknowledge the Enhanced Surveillance Program (Tom
   Zocco) at Los Alamos National Laboratory for funding this work. The Los
   Alamos National Laboratory is operated by Los Alamos National Security
   LLC for the National Nuclear Security Administration of the U.S.
   Department of Energy under Contract No. DE-AC52-06NA25396.
NR 23
TC 5
Z9 5
U1 0
U2 12
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 7
PY 2010
VL 82
IS 22
AR 224408
DI 10.1103/PhysRevB.82.224408
PG 6
WC Physics, Condensed Matter
SC Physics
GA 713SE
UT WOS:000286756900002
ER

PT J
AU Valvidares, SM
   Huijben, M
   Yu, P
   Ramesh, R
   Kortright, JB
AF Valvidares, S. M.
   Huijben, M.
   Yu, P.
   Ramesh, R.
   Kortright, J. B.
TI Native SrTiO3 (001) surface layer from resonant Ti L-2,L-3 reflectance
   spectroscopy
SO PHYSICAL REVIEW B
LA English
DT Article
ID X-RAY-ABSORPTION; MAGNETIC SCATTERING; OPTICAL-CONSTANTS; THIN-FILMS;
   AB-INITIO; PHOTOABSORPTION; TRANSITION; PHOTOEMISSION; INTERFERENCE;
   REFLECTIVITY
AB We quantitatively model resonant Ti L-2,L-3 reflectivity R-s,R-p(q, hv) from several SrTiO3 (001) single crystals having different initial surface preparations and stored in ambient conditions before and between measurements. All samples exhibit unexpected 300 K R-s(hv)-R-p(hv) anisotropy corresponding to weak linear dichroism and tetragonal distortion of the TiO6 octahedra indicating a surface layer with properties different from cubic SrTiO3. Oscillations in R-s(q) confirm a ubiquitous surface layer 2-3 nm thick that evolves over a range of time scales. Resonant optical constant spectra derived from R-s,R-p(hv) assuming a uniform sample are refined using a single surface layer to fit measured R-s(q). Differences in surface layer and bulk optical properties indicate that the surface is significantly depleted in Sr and enriched in Ti and O. While consistent with the tendency of SrTiO3 surfaces toward nonstoichiometry, this layer does not conform simply to existing models for the near surface region and apparently forms via room-temperature surface reactions with the ambient. This quantitative spectral modeling approach is generally applicable and has potential to study near-surface properties of a variety of systems with unique chemical and electronic sensitivities.
C1 [Valvidares, S. M.; Ramesh, R.; Kortright, J. B.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Valvidares, S. M.] ALBA Synchrotron Light Source, Barcelona 08290, Spain.
   [Huijben, M.; Yu, P.; Ramesh, R.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Huijben, M.] Univ Twente, Fac Sci & Technol, NL-7500 AE Enschede, Netherlands.
   [Huijben, M.] Univ Twente, MESA Inst Nanotechnol, NL-7500 AE Enschede, Netherlands.
RP Valvidares, SM (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
RI MSD, Nanomag/F-6438-2012; Yu, Pu/F-1594-2014; Valvidares, Secundino
   /M-4979-2016
OI Valvidares, Secundino /0000-0003-4895-8114
FU U.S. Department of Energy, Office of Basic Energy Sciences, Division of
   Materials Sciences and Engineering [DE-AC02-05CH11231]
FX Research, including measurements using beamlines 4.0, 8.0, and 6.3.2 at
   the Advanced Light Source (LBNL), was supported by the U.S. Department
   of Energy, Office of Basic Energy Sciences, Division of Materials
   Sciences and Engineering under Contract No. DE-AC02-05CH11231. A
   U.S.-Spain Fulbright supported S. M. V. for part of this work.
NR 78
TC 13
Z9 13
U1 1
U2 32
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 7
PY 2010
VL 82
IS 23
AR 235410
DI 10.1103/PhysRevB.82.235410
PG 12
WC Physics, Condensed Matter
SC Physics
GA 713WD
UT WOS:000286767200002
ER

PT J
AU de Oteyza, DG
   El-Sayed, A
   Garcia-Lastra, JM
   Goiri, E
   Krauss, TN
   Turak, A
   Barrena, E
   Dosch, H
   Zegenhagen, J
   Rubio, A
   Wakayama, Y
   Ortega, JE
AF de Oteyza, D. G.
   El-Sayed, A.
   Garcia-Lastra, J. M.
   Goiri, E.
   Krauss, T. N.
   Turak, A.
   Barrena, E.
   Dosch, H.
   Zegenhagen, J.
   Rubio, A.
   Wakayama, Y.
   Ortega, J. E.
TI Copper-phthalocyanine based metal-organic interfaces: The effect of
   fluorination, the substrate, and its symmetry
SO JOURNAL OF CHEMICAL PHYSICS
LA English
DT Article
ID SCANNING-TUNNELING-MICROSCOPY; ENERGY-ELECTRON-DIFFRACTION;
   SUPRAMOLECULAR ASSEMBLIES; THIN-FILMS; MONOLAYERS; AU(111);
   SPECTROSCOPY; CU(111); RECONSTRUCTION; PHOTOEMISSION
AB Metal-organic interfaces based on copper-phthalocyanine monolayers are studied in dependence of the metal substrate (Au versus Cu), of its symmetry [hexagonal (111) surfaces versus fourfold (100) surfaces], as well as of the donor or acceptor semiconducting character associated with the nonfluorinated or perfluorinated molecules, respectively. Comparison of the properties of these systematically varied metal-organic interfaces provides new insight into the effect of each of the previously mentioned parameters on the molecule-substrate interactions. (C) 2010 American Institute of Physics. [doi:10.1063/1.3509394]
C1 [de Oteyza, D. G.; Goiri, E.; Ortega, J. E.] Donostia Int Phys Ctr, San Sebastian 20018, Spain.
   [de Oteyza, D. G.; Wakayama, Y.] Natl Inst Mat Sci, Adv Elect Mat Ctr, Tsukuba, Ibaraki 3050044, Japan.
   [El-Sayed, A.; Ortega, J. E.] Univ Basque Country, Dept Fis Aplicada, San Sebastian 20018, Spain.
   [Garcia-Lastra, J. M.; Rubio, A.] Univ Basque Country, Nanobio Spect Grp, E-20018 San Sebastian, Spain.
   [Garcia-Lastra, J. M.; Rubio, A.] Univ Basque Country, ETSF Sci Dev Ctr, Dpto Fis Mat, E-20018 San Sebastian, Spain.
   [Krauss, T. N.; Turak, A.; Barrena, E.; Dosch, H.] Max Planck Inst Met Res, D-70569 Stuttgart, Germany.
   [Barrena, E.] CSIC, Inst Ciencia Mat Barcelona, Bellaterra 08193, Cerdanyola, Spain.
   [Dosch, H.] Deutsch Elekt Synchrotron DESY, D-22607 Hamburg, Germany.
   [Zegenhagen, J.] European Synchrotron Radiat Facil ESRF, F-38043 Grenoble 9, France.
   [Ortega, J. E.] UPV, Ctr Fis Mat, CSIC, EHU,MPC, San Sebastian 20018, Spain.
RP de Oteyza, DG (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Mol Foundry, 1 Cyclotron Rd, Berkeley, CA 94720 USA.
EM dgoteyza@lbl.gov
RI Garcia Lastra, Juan Maria/A-9996-2010; CSIC-UPV/EHU, CFM/F-4867-2012; de
   Oteyza, Dimas/H-5955-2013; Barrena, Esther/B-7683-2014; DONOSTIA
   INTERNATIONAL PHYSICS CTR., DIPC/C-3171-2014; Rubio, Angel/A-5507-2008;
   Computing Service, IZO-SGI/F-3072-2010; ortega, enrique/I-4445-2012; 
OI Goiri, Elizabeth/0000-0002-8604-4404; Garcia Lastra, Juan
   Maria/0000-0001-5311-3656; de Oteyza, Dimas/0000-0001-8060-6819;
   Barrena, Esther/0000-0001-9163-2959; Rubio, Angel/0000-0003-2060-3151;
   Turak, Ayse/0000-0002-2038-0624
FU Spanish MICINN [MAT2007-63083]; Basque Government [IT-257-07]; Spanish
   MEC [FIS2007-65702-C02-01]; ACI-Promociona [ACI2009-1036]; Grupos
   Consolidados UPV/EHU del Gobierno Vasco [IT-319-07]; European Union
   [211956, 228539]; Barcelona Supercomputing Center; Red Espanola de
   Supercomputacion; ARINA; NABIIT
FX This work was partly supported by the Spanish MICINN (MAT2007-63083) and
   the Basque Government (IT-257-07). J.M.G.-L. and A. R. acknowledge
   financial support from Spanish MEC (FIS2007-65702-C02-01),
   ACI-Promociona (ACI2009-1036), "Grupos Consolidados UPV/EHU del Gobierno
   Vasco" (IT-319-07), the European Union through the FP7 e-I3 ETSF
   (Contract No. 211956), and THEMA (Contract No. 228539) projects. They
   also acknowledge support by the Barcelona Supercomputing Center, "Red
   Espanola de Supercomputacion," ARINA, and NABIIT. We acknowledge the
   European Synchrotron Radiation Facility for provision of synchrotron
   radiation facilities.
NR 42
TC 41
Z9 41
U1 0
U2 32
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0021-9606
J9 J CHEM PHYS
JI J. Chem. Phys.
PD DEC 7
PY 2010
VL 133
IS 21
AR 214703
DI 10.1063/1.3509394
PG 6
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 692NL
UT WOS:000285159400016
PM 21142310
ER

PT J
AU Jungen, C
   Pratt, ST
AF Jungen, Ch
   Pratt, S. T.
TI Low-energy dissociative recombination in small polyatomic molecules
SO JOURNAL OF CHEMICAL PHYSICS
LA English
DT Article
ID QUANTUM-DEFECT THEORY; ELECTRONIC EMISSION-SPECTRUM; RYDBERG STATE
   DYNAMICS; ION BEAM EXPERIMENTS; VIBRATIONAL AUTOIONIZATION;
   PERPENDICULAR BANDS; TRIATOMIC HYDROGEN; CROSS-SECTIONS; MERGED-BEAM;
   IONIZATION
AB Indirect dissociative recombination of low-energy electrons and molecular ions often occurs through capture into vibrationally excited Rydberg states. Properties of vibrational autoionization, the inverse of this capture mechanism, are used to develop some general ideas about the indirect recombination process, and these ideas are illustrated by examples from the literature. In particular, the Delta v = -1 propensity rule for vibrational autoionization, i.e., that vibrational autoionization occurs by the minimum energetically allowed change in vibrational quantum numbers, leads to the prediction of thresholds in the dissociative recombination cross sections and rates at the corresponding vibrational thresholds. Capture into rotationally excited Rydberg states is also discussed in terms of recent low-temperature studies of the dissociative recombination of H-3(+). (C) 2010 American Institute of Physics. [doi:10.1063/1.3518039]
C1 [Jungen, Ch] Univ Paris 11, Lab Aime Cotton, CNRS, F-91405 Orsay, France.
   [Pratt, S. T.] Argonne Natl Lab, Argonne, IL 60439 USA.
   [Jungen, Ch] UCL, Dept Phys & Astron, London WC1E 6BT, England.
RP Jungen, C (reprint author), Univ Paris 11, Lab Aime Cotton, CNRS, Batiment 505, F-91405 Orsay, France.
EM stpratt@anl.gov
FU ANR (France) [09-BLAN-020901]; E. Miescher Foundation (Basel,
   Switzerland); U.S. Department of Energy, Office of Science, Office of
   Basic Energy Sciences, Division of Chemical Sciences, Geosciences, and
   Biosciences [DE-AC02-06CH11357]; Universite Paris Sud
FX Ch. J. was supported in part by the ANR (France) under Contract No.
   09-BLAN-020901. Ch. J. has also benefitted from support by the E.
   Miescher Foundation (Basel, Switzerland). S. T. P. was supported at
   Argonne by the U.S. Department of Energy, Office of Science, Office of
   Basic Energy Sciences, Division of Chemical Sciences, Geosciences, and
   Biosciences under contract No. DE-AC02-06CH11357. Travel by S. T. P. was
   partially supported by the Universite Paris Sud. We would like to thank
   Patrik Andersson, Mats Larsson, and Ben McCall for providing digital
   files of their data.
NR 63
TC 10
Z9 10
U1 1
U2 5
PU AMER INST PHYSICS
PI MELVILLE
PA 1305 WALT WHITMAN RD, STE 300, MELVILLE, NY 11747-4501 USA
SN 0021-9606
EI 1089-7690
J9 J CHEM PHYS
JI J. Chem. Phys.
PD DEC 7
PY 2010
VL 133
IS 21
AR 214303
DI 10.1063/1.3518039
PG 9
WC Chemistry, Physical; Physics, Atomic, Molecular & Chemical
SC Chemistry; Physics
GA 692NL
UT WOS:000285159400006
PM 21142300
ER

PT J
AU Connaughton, V
   Briggs, MS
   Holzworth, RH
   Hutchins, ML
   Fishman, GJ
   Wilson-Hodge, CA
   Chaplin, VL
   Bhat, PN
   Greiner, J
   von Kienlin, A
   Kippen, RM
   Meegan, CA
   Paciesas, WS
   Preece, RD
   Cramer, E
   Dwyer, JR
   Smith, DM
AF Connaughton, V.
   Briggs, M. S.
   Holzworth, R. H.
   Hutchins, M. L.
   Fishman, G. J.
   Wilson-Hodge, C. A.
   Chaplin, V. L.
   Bhat, P. N.
   Greiner, J.
   von Kienlin, A.
   Kippen, R. M.
   Meegan, C. A.
   Paciesas, W. S.
   Preece, R. D.
   Cramer, E.
   Dwyer, J. R.
   Smith, D. M.
TI Associations between Fermi Gamma-ray Burst Monitor terrestrial gamma ray
   flashes and sferics from the World Wide Lightning Location Network
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID ELECTRONS; SPRITES
AB We report on a search for correlations between terrestrial gamma ray flashes (TGFs) detected by the Fermi Gamma-ray Burst Monitor (GBM) and lightning strokes measured using the World Wide Lightning Location Network (WWLLN). We associate 15 of a total 50 GBM-detected TGFs with individual discharges. We establish the relative timing between the TGF and the lightning stroke to an accuracy of <50 mu s, and find that in 13 of these 15 lightning-TGF associations, the lightning stroke and the peak of the TGF are simultaneous to similar to 40 mu s. This suggests that a large fraction of TGFs are coincident with lightning discharges. The two nonsimultaneous associations do not show a consistent TGF-lightning stroke temporal sequence. All 15 associations are with sferics within 300 km of the subspacecraft position. For those TGFs not correlated with a particular lightning stroke, we find storm activity within 300 km of the subspacecraft position in all but four of the TGFs. For three of these four TGFs, we find storm activity very close to one of the magnetic footprints of the spacecraft position. We associate the subspacecraft TGFs with gamma ray events and the footprint events with electrons traveling along magnetic field lines before hitting the Fermi spacecraft.
C1 [Connaughton, V.; Briggs, M. S.; Chaplin, V. L.; Bhat, P. N.; Paciesas, W. S.; Preece, R. D.] Univ Alabama, CSPAR, Huntsville, AL 35805 USA.
   [Cramer, E.; Dwyer, J. R.] Florida Inst Technol, Melbourne, FL 32901 USA.
   [Fishman, G. J.; Wilson-Hodge, C. A.] NASA, George C Marshall Space Flight Ctr, Space Sci Off, Huntsville, AL 35812 USA.
   [Greiner, J.; von Kienlin, A.] Max Planck Inst Extraterr Phys, D-85741 Garching, Germany.
   [Holzworth, R. H.; Hutchins, M. L.] Univ Washington, Seattle, WA 98195 USA.
   [Kippen, R. M.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Smith, D. M.] Univ Calif Santa Cruz, Dept Phys, Santa Cruz, CA 95064 USA.
   [Paciesas, W. S.; Preece, R. D.] Univ Alabama, Dept Phys, Huntsville, AL 35899 USA.
   [Meegan, C. A.] NASA, George C Marshall Space Flight Ctr, Univ Space Res Assoc, Huntsville, AL 35812 USA.
RP Connaughton, V (reprint author), Univ Alabama, CSPAR, 320 Sparkman Dr, Huntsville, AL 35805 USA.
EM bobholz@ess.washington.edu; jerry.fishman@nasa.gov; valerie@nasa.gov;
   azk@mpe.mpg.de; mkippen@lanl.gov; jdwyer@fit.edu; dsmith@scipp.ucsc.edu
OI Preece, Robert/0000-0003-1626-7335
NR 27
TC 46
Z9 46
U1 1
U2 5
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0148-0227
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 7
PY 2010
VL 115
AR A12307
DI 10.1029/2010JA015681
PG 14
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 693WJ
UT WOS:000285255800003
ER

PT J
AU Guedj, J
   Neumann, AU
AF Guedj, J.
   Neumann, A. U.
TI Understanding hepatitis C viral dynamics with direct-acting antiviral
   agents due to the interplay between intracellular replication and
   cellular infection dynamics
SO JOURNAL OF THEORETICAL BIOLOGY
LA English
DT Article
DE DAA; HCV; Mathematical modeling; Viral evolution; Viral kinetics
ID VIRUS-INFECTION; REVERSE-TRANSCRIPTASE; RESISTANCE MUTATIONS;
   DRUG-RESISTANCE; HUH-7 CELLS; IN-VIVO; RNA; HIV-1; INTERFERON; INHIBITOR
AB The current paradigm for modeling viral kinetics and resistance evolution after treatment initiation considers only the level of circulating virus and cellular infection (Cl model), while the intra-cellular level is disregarded. This model was successfully used to explain HIV dynamics and Hepatitis C virus (HCV) dynamics during interferon-based therapy. However, in the new era of direct-acting antiviral agents (DAAs) against HCV, viral kinetics is characterized by a more rapid decline of the wild-type virus as well as an early emergence of resistant strains that jeopardize the treatment outcome. Although the Cl model can be extended to describe these new kinetic patterns, this approach has qualitative and quantitative limitations. Instead, we suggest that a more appropriate approach would consider viral dynamics at the cell infection level, as done currently, as well as at the intracellular level. Indeed, whereas in HIV integrated DNA serves as a static replication unit and mutations occur only once per infected cell, HCV replication is deeply affected by DAAs and furthermore processes of resistance evolution can occur at the intra-cellular level with a faster time-scale.
   We propose a comprehensive model of HCV dynamics that considers both extracellular and intracellular levels of infection (ICCI model). Intracellular viral genomic units are used to form replication units, which in turn synthesize genomic units that are packaged and secreted as virions infecting more target cells. Resistance evolution is modeled intra-cellularly, by different genomic- and replication-unit strains with particular relative-fitness and drug sensitivity properties, allowing for a rapid resistance takeover.
   Using the ICCI model, we show that the rapid decline of wild-type virus results from the ability of DAAs to destabilize the intracellular replication. On the other hand, this ability also favors the rapid emergence, intracellularly, of resistant virus. By considering the interaction between intracellular and extracellular infection we show that resistant virus, able to maintain a high level of intracellular replication, may nevertheless be unable to maintain rapid enough de novo infection rate at the extracellular level. Hence this model predicts that in HCV, and contrary to our experience with HIV, the emergence of productively resistant virus may not systematically prevent from a viral decline in the long-term. Thus, the ICCI model can explain the transient viral rebounds observed with DAA treatment as well as the viral resistance found in most patients with viral relapse at the end of DAA combination therapy. Published by Elsevier Ltd.
C1 [Guedj, J.; Neumann, A. U.] Bar Ilan Univ, Everard & Mina Goodman Fac Life Sci, IL-52900 Ramat Gan, Israel.
   [Guedj, J.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Neumann, A. U.] Santa Fe Inst, Santa Fe, NM 87501 USA.
RP Neumann, AU (reprint author), Bar Ilan Univ, Everard & Mina Goodman Fac Life Sci, IL-52900 Ramat Gan, Israel.
EM jeremie.guedj@gmail.com; neumann@mail.biu.ac.il
OI guedj, Jeremie/0000-0002-5534-5482
FU French Ministry of Foreign Affairs; Israeli Ministry of Foreign Affairs;
   French Foundation for Medical Research (FRM); Israel Science Foundation
   [ISF 939/2008]; US Department of Energy [RR06555, P20-RR18754]
FX We thank A.M. Smith, A.S. Perelson (lanl) and both anonymous reviewers
   for helpful comments. This work was supported by the French Ministry of
   Foreign Affairs, the Israeli Ministry of Foreign Affairs, the French
   Foundation for Medical Research (FRM), the Israel Science Foundation
   (ISF 939/2008), and the US Department of Energy under Contract RR06555
   and P20-RR18754.
NR 45
TC 29
Z9 29
U1 1
U2 10
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0022-5193
J9 J THEOR BIOL
JI J. Theor. Biol.
PD DEC 7
PY 2010
VL 267
IS 3
BP 330
EP 340
DI 10.1016/j.jtbi.2010.08.036
PG 11
WC Biology; Mathematical & Computational Biology
SC Life Sciences & Biomedicine - Other Topics; Mathematical & Computational
   Biology
GA 675JA
UT WOS:000283825200009
PM 20831874
ER

PT J
AU Rai, R
   Baker, GA
   Behera, K
   Mohanty, P
   Kurur, ND
   Pandey, S
AF Rai, Rewa
   Baker, Gary A.
   Behera, Kamalakanta
   Mohanty, Pravakar
   Kurur, Narayanan D.
   Pandey, Siddharth
TI Ionic Liquid-Induced Unprecedented Size Enhancement of Aggregates within
   Aqueous Sodium Dodecylbenzene Sulfonate
SO LANGMUIR
LA English
DT Article
ID BLOCK-COPOLYMER MICELLES; AROMATIC-HYDROCARBONS; EXCIMER FORMATION;
   MIXED MICELLES; WATER; PHASE; BEHAVIOR; MICROEMULSIONS; SOLUBILIZATION;
   HYDROGENATION
AB Physicochemical properties of aqueous micellar solutions may change in the presence of ionic liquids (ILs). Micelles help to increase the aqueous solubility of ILs. The average size of the micellar aggregates within aqueous sodium dodecylbenzene sulfonate (SOBS) is observed by dynamic light scattering (DLS) and transmission electron microscopy (TEM) to increase in a sudden and drastic fashion as the IL 1-butyl-3-methylimidazolium hexafluorophosphate ([bmim][PF6]) is added. Similar addition of [bmim][PF6] to aqueous sodium dodecyl sulfate (SOS) results in only a slow gradual increase in average aggregate size. While addition of the IL [bmim][BF4] also gives rise to sudden aggregate size enhancement within aqueous SDBS, the IL 1-ethyl-3-methylimidazolium tetrafluoroborate ([emim][BF4]), and inorganic salts NaPF6 and NaBF4, only gradually increase the assembly size upon their addition. Bulk dynamic viscosity, microviscosity, dipolarity (indicated by the fluorescent reporter pyrene), zeta potential, and electrical conductance measurements were taken to gain insight into this unusual size enhancement. It is proposed that bmim(+) cations of the IL undergo Coulombic attractive interactions with anionic headgroups at the micellar surface at all [bmim][PF6] concentrations in aqueous SDS; in aqueous SDBS, beyond a critical IL concentration, bmim(4) becomes involved in cation-pi interaction with the phenyl moiety of SOBS within micellar aggregates with the butyl group aligned along the alkyl chain of the surfactant. This relocation of bmim(+) results in an unprecedented size increase in micellar aggregates. Aromaticity of the IL cation alongside the presence of sufficiently aliphatic (butyl or longer) alkyl chains on the IL appear to be essential for this dramatic critical expansion in self-assembly dimensions within aqueous SDBS.
C1 [Rai, Rewa; Behera, Kamalakanta; Kurur, Narayanan D.; Pandey, Siddharth] Indian Inst Technol Delhi, Dept Chem, New Delhi 110016, India.
   [Mohanty, Pravakar] Indian Inst Technol Delhi, Dept Chem Engn, New Delhi 110016, India.
   [Baker, Gary A.] Oak Ridge Natl Lab, Div Chem Sci, Oak Ridge, TN 37931 USA.
RP Pandey, S (reprint author), Indian Inst Technol Delhi, Dept Chem, New Delhi 110016, India.
EM sipandey@chemistry.iitd.ac.in
RI MOHANTY, PRAVAKAR/G-4051-2012; Baker, Gary/H-9444-2016; 
OI Baker, Gary/0000-0002-3052-7730; Behera,
   Kamalakanta/0000-0001-7883-5401; MOHANTY, PRAVAKAR/0000-0002-2003-2451
FU Department of Science and Technology (DST); Government of India
   [SR/S1/PC-16/2008]; CSIR, Government of India
FX This work is generously supported by the Department of Science and
   Technology (DST), Government of India through a grant to S.P. (Grant No.
   SR/S1/PC-16/2008). R.R. and K.B. would like to thank CSIR, Government of
   India for fellowships.
NR 36
TC 56
Z9 56
U1 3
U2 34
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0743-7463
J9 LANGMUIR
JI Langmuir
PD DEC 7
PY 2010
VL 26
IS 23
BP 17821
EP 17826
DI 10.1021/la103689m
PG 6
WC Chemistry, Multidisciplinary; Chemistry, Physical; Materials Science,
   Multidisciplinary
SC Chemistry; Materials Science
GA 686XM
UT WOS:000284732300010
PM 21043453
ER

PT J
AU Williams, C
   Flower, BP
   Hastings, DW
   Guilderson, TP
   Quinn, KA
   Goddard, EA
AF Williams, Carlie
   Flower, Benjamin P.
   Hastings, David W.
   Guilderson, Thomas P.
   Quinn, Kelly A.
   Goddard, Ethan A.
TI Deglacial abrupt climate change in the Atlantic Warm Pool: A Gulf of
   Mexico perspective
SO PALEOCEANOGRAPHY
LA English
DT Article
ID SEA-SURFACE TEMPERATURE; YOUNGER DRYAS CLIMATE; LAURENTIDE ICE-SHEET;
   LAST GLACIAL PERIOD; PLANKTONIC-FORAMINIFERA; NORTH-ATLANTIC;
   THERMOHALINE CIRCULATION; VARIABILITY; MG/CA; CALIBRATION
AB During the last deglaciation, Greenland ice core and North Atlantic sediment records exhibit multiple abrupt climate events including the Younger Dryas cold episode (12.9-11.7 ka). However, evidence for the presence of the Younger Dryas in the Gulf of Mexico (GOM) and the relationship between GOM sea surface temperature (SST) and high-latitude climate change is less clear. We present new Mg/Ca-SST records from two varieties of the planktonic foraminifer Globigerinoides ruber (white and pink) to assess northern GOM SST history from approximately 18.4-10.8 ka. Thirty-five accelerator mass spectrometry (AMS) C-14 dates from Orca Basin core MD02-2550 provide excellent age control and document high sedimentation rates (similar to 40 cm/kyr). G. ruber (white and pink) Mg/Ca-SST data exhibit increases (similar to 4.6 +/- 0.6 degrees C and similar to 2.2 +/- 0.5 degrees C, respectively) from at least 17.8-16.6 ka, with nearly decadal resolution that are early relative to the onset of the Bolling-Allerod interstadial. Moreover, G. ruber (white) SST decreases at 16.0-14.7 ka (similar to 1.0 +/- 0.5 degrees C) and 12.8-11.6 ka (similar to 2.4 +/- 0.6 degrees C) correlate to the Oldest and Younger Dryas in Greenland and Cariaco Basin. The G. ruber (pink) SST record, which reflects differences in seasonality and/or depth habitat, is often not in phase with G. ruber (white) and closely resembles Antarctic air temperature records. Overall, it appears that Orca Basin SST records follow Antarctic air temperature early in the deglacial sequence and exhibit enhanced seasonality during Greenland stadials.
C1 [Williams, Carlie; Flower, Benjamin P.; Quinn, Kelly A.; Goddard, Ethan A.] Univ S Florida, Coll Marine Sci, St Petersburg, FL 33701 USA.
   [Guilderson, Thomas P.] Lawrence Livermore Natl Lab, Ctr Accelerator Mass Spectrometry, Livermore, CA 94551 USA.
   [Hastings, David W.] Eckerd Coll, Coll Nat Sci, St Petersburg, FL 33713 USA.
RP Williams, C (reprint author), Univ S Florida, Coll Marine Sci, 140 7th Ave S, St Petersburg, FL 33701 USA.
EM cwilliams@mail.usf.edu
RI Williams, Carlie/A-2066-2012; 
OI Goddard, Ethan/0000-0001-6749-7937
FU Gary Comer Science and Education Foundation [CP-18]; National Science
   Foundation [OCE-0318361, OCE-0903017]; U.S. Department of Energy by
   Lawrence Livermore National Laboratory [W-7405-Eng-48]
FX We thank the IMAGES program, Viviane Bout-Roumazeilles, Yvon Balut, and
   Laurent Labeyrie for a productive cruise on the R/V Marion Dufresne in
   2002. This work was supported by the Gary Comer Science and Education
   Foundation (CP-18 to B. P. F. and D. W. H.), with partial support from
   the National Science Foundation under grants OCE-0318361 and
   OCE-0903017. Radiocarbon analyses were performed under the auspices of
   the U.S. Department of Energy by Lawrence Livermore National Laboratory
   (contract W-7405-Eng-48). We also thank Jessica Spear, Julie Richey, and
   USF Paleo lab members for useful discussions and Eckerd College interns
   Hilary Browning, Kaela Wuestoff, Katie Slatterey, and Missy Gilbert for
   help in sample preparation. We thank Rainer Zahn, Stefan Mulitza, and an
   anonymous reviewer for insightful reviews.
NR 67
TC 17
Z9 17
U1 1
U2 18
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0883-8305
J9 PALEOCEANOGRAPHY
JI Paleoceanography
PD DEC 7
PY 2010
VL 25
AR PA4221
DI 10.1029/2010PA001928
PG 12
WC Geosciences, Multidisciplinary; Oceanography; Paleontology
SC Geology; Oceanography; Paleontology
GA 693WZ
UT WOS:000285257400002
ER

PT J
AU Blume-Kohout, R
   Ng, HK
   Poulin, D
   Viola, L
AF Blume-Kohout, Robin
   Ng, Hui Khoon
   Poulin, David
   Viola, Lorenza
TI Information-preserving structures: A general framework for quantum
   zero-error information
SO PHYSICAL REVIEW A
LA English
DT Article
ID DECOHERENCE-FREE SUBSPACES; DYNAMICAL SEMIGROUPS; MATHEMATICAL-THEORY;
   CORRECTING CODES; COMPUTATION; SUBSYSTEMS; MEMORY; COMMUNICATION;
   REALIZATION; COMPUTERS
AB Quantum systems carry information. Quantum theory supports at least two distinct kinds of information (classical and quantum), and a variety of different ways to encode and preserve information in physical systems. A system's ability to carry information is constrained and defined by the noise in its dynamics. This paper introduces an operational framework, using information-preserving structures, to classify all the kinds of information that can be perfectly (i.e., with zero error) preserved by quantum dynamics. We prove that every perfectly preserved code has the same structure as a matrix algebra, and that preserved information can always be corrected. We also classify distinct operational criteria for preservation (e. g., "noiseless," "unitarily correctible," etc.) and introduce two natural criteria for measurement-stabilized and unconditionally preserved codes. Finally, for several of these operational criteria, we present efficient (polynomial in the state-space dimension) algorithms to find all of a channel's information-preserving structures.
C1 [Blume-Kohout, Robin] Perimeter Inst Theoret Phys, Waterloo, ON N2L 2Y5, Canada.
   [Ng, Hui Khoon] CALTECH, Inst Quantum Informat, Pasadena, CA 91125 USA.
   [Poulin, David] Univ Sherbrooke, Dept Phys, Sherbrooke, PQ J1K 2R1, Canada.
   [Viola, Lorenza] Dartmouth Coll, Dept Phys & Astron, Wilder Lab 6127, Hanover, NH 03755 USA.
RP Blume-Kohout, R (reprint author), Los Alamos Natl Lab, Div Theoret, Mail Stop B258, Los Alamos, NM 87545 USA.
EM robin@blumekohout.com; cqtnhk@nus.edu.sg; david.poulin@usherbrooke.ca;
   lorenza.viola@dartmouth.edu
RI Poulin, David/A-1481-2010; 
OI Ng, Hui Khoon/0000-0003-2397-840X
FU Gordon and Betty Moore Foundation; Natural Sciences and Engineering
   Research Council of Canada; Fonds Quebecois de la Recherche sur la
   Nature et les Technologies; National Science Foundation [PHY-0803371,
   PHY-0456720, PHY-0555417, PHY-0903727]; Government of Canada through
   Industry Canada; Province of Ontario through the Ministry of Research
   Innovation
FX The authors acknowledge support in part by the Gordon and Betty Moore
   Foundation (D. P. and H-K.N.); by the Natural Sciences and Engineering
   Research Council of Canada and Fonds Quebecois de la Recherche sur la
   Nature et les Technologies (D. P.); by the National Science Foundation
   under Grants No. PHY-0803371, No. PHY-0456720, No. PHY-0555417, and No.
   PHY-0903727 (L. V.); and by the Government of Canada through Industry
   Canada and the Province of Ontario through the Ministry of Research &
   Innovation (R. B. K.). We also gratefully acknowledge extensive
   conversations with Robert Spekkens, Daniel Gottesman, Cedric Beny, and
   Wojciech Zurek.
NR 84
TC 28
Z9 28
U1 3
U2 3
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1050-2947
EI 1094-1622
J9 PHYS REV A
JI Phys. Rev. A
PD DEC 7
PY 2010
VL 82
IS 6
AR 062306
DI 10.1103/PhysRevA.82.062306
PG 25
WC Optics; Physics, Atomic, Molecular & Chemical
SC Optics; Physics
GA 713JC
UT WOS:000286733300007
ER

PT J
AU Cao, J
   Fan, W
   Chen, K
   Tamura, N
   Kunz, M
   Eyert, V
   Wu, J
AF Cao, J.
   Fan, W.
   Chen, K.
   Tamura, N.
   Kunz, M.
   Eyert, V.
   Wu, J.
TI Constant threshold resistivity in the metal-insulator transition of VO2
SO PHYSICAL REVIEW B
LA English
DT Article
ID VANADIUM DIOXIDE; ELECTRONIC-PROPERTIES; MOTT TRANSITION; BAND THEORY;
   TEMPERATURE; NANOBEAMS; ORGANIZATION; PEIERLS; HUBBARD; DOMAINS
AB We report a constant threshold resistivity observed for the insulating phase of VO2 before it transfers into the metallic phase, regardless of the initial resistivity, transition temperature, and strain state. The value of the threshold resistivity is also comparable for different lattice structures of the insulating phase. Such a constant threshold resistivity suggests that a constant critical free-electron concentration is needed on the insulating side to trigger the insulator-to-metal transition, indicating the electronic nature of the mechanism of the transition.
C1 [Cao, J.; Fan, W.; Wu, J.] Univ Calif Berkeley, Dept Mat Sci & Engn, Berkeley, CA 94720 USA.
   [Cao, J.; Wu, J.] Lawrence Berkeley Natl Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Fan, W.] Univ Sci & Technol China, Dept Thermal Sci & Energy Engn, Hefei 230026, Peoples R China.
   [Chen, K.; Tamura, N.; Kunz, M.] Lawrence Berkeley Natl Lab, Adv Light Source, Berkeley, CA 94720 USA.
   [Eyert, V.] Univ Augsburg, Inst Phys, D-86135 Augsburg, Germany.
RP Wu, J (reprint author), Univ Calif Berkeley, Dept Mat Sci & Engn, Berkeley, CA 94720 USA.
EM wuj@berkeley.edu
RI Cao, Jinbo/C-7537-2009; Wu, Junqiao/G-7840-2011; Eyert,
   Volker/C-5968-2008; Kunz, Martin/K-4491-2012; Chen, Kai/O-5662-2014
OI Wu, Junqiao/0000-0002-1498-0148; Kunz, Martin/0000-0001-9769-9900; Chen,
   Kai/0000-0002-4917-4445
FU National Science Foundation [EEC-0832819]; Lawrence Berkeley National
   Laboratory under the Department of Energy [DE-AC02-05CH11231]; DFG
   [SFB484, TRR80]
FX The sample preparation in this work was supported by National Science
   Foundation under Grant No. EEC-0832819, and the device fabrication and
   characterization by the Laboratory Directed Research and Development
   Program of Lawrence Berkeley National Laboratory under the Department of
   Energy Contract No. DE-AC02-05CH11231. V. E. acknowledges support from
   the DFG through SFB484 and TRR80.
NR 32
TC 30
Z9 30
U1 1
U2 35
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 7
PY 2010
VL 82
IS 24
AR 241101
DI 10.1103/PhysRevB.82.241101
PG 4
WC Physics, Condensed Matter
SC Physics
GA 715OZ
UT WOS:000286895100001
ER

PT J
AU Li, J
   Morpurgo, AF
   Buttiker, M
   Martin, I
AF Li, Jian
   Morpurgo, Alberto F.
   Buettiker, Markus
   Martin, Ivar
TI Marginality of bulk-edge correspondence for single-valley Hamiltonians
SO PHYSICAL REVIEW B
LA English
DT Article
ID BILAYER GRAPHENE; TOPOLOGICAL INSULATORS; HALL CONDUCTANCE; PHASE
AB We study the correspondence between the nontrivial topological properties associated with the individual valleys of gapped bilayer graphene (BLG), as a prototypical multivalley system, and the gapless modes at its edges and other interfaces. We find that the exact connection between the valley-specific Hall conductivity and the number of gapless edge modes does not hold in general, but is dependent on the boundary conditions, even in the absence of intervalley coupling. This nonuniversality is attributed to the absence of a well-defined topological invariant within a given valley of BLG; yet, a more general topological invariant may be defined in certain cases, which explains the distinction between the BLG-vacuum and BLG-BLG interfaces.
C1 [Li, Jian; Buettiker, Markus] Univ Geneva, Dept Phys Theor, CH-1211 Geneva 4, Switzerland.
   [Morpurgo, Alberto F.] Univ Geneva, DPMC, CH-1211 Geneva 4, Switzerland.
   [Morpurgo, Alberto F.] Univ Geneva, GAP, CH-1211 Geneva 4, Switzerland.
   [Martin, Ivar] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
RP Li, J (reprint author), Univ Geneva, Dept Phys Theor, CH-1211 Geneva 4, Switzerland.
RI Li, Jian/B-8398-2011
OI Li, Jian/0000-0003-0297-6528
FU Swiss National Science Foundation [200020-121807, 200021-121569]; Swiss
   Center of Excellence MaNEP; European Network NanoCTM; U.S. Department of
   Energy at Los Alamos National Laboratory [DE-AC52-06NA25396]; LANL/LDRD
FX This work has been supported by the Swiss National Science Foundation
   (Projects No. 200020-121807 and No. 200021-121569), by the Swiss Center
   of Excellence MaNEP, and the European Network NanoCTM. The work of I. M.
   was carried out under the auspices of the National Nuclear Security
   Administration of the U.S. Department of Energy at Los Alamos National
   Laboratory under Contract No. DE-AC52-06NA25396 and supported by the
   LANL/LDRD Program.
NR 27
TC 20
Z9 20
U1 1
U2 13
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 7
PY 2010
VL 82
IS 24
AR 245404
DI 10.1103/PhysRevB.82.245404
PG 7
WC Physics, Condensed Matter
SC Physics
GA 715OZ
UT WOS:000286895100008
ER

PT J
AU Cooper, F
   Chien, CC
   Mihaila, B
   Dawson, JF
   Timmermans, E
AF Cooper, Fred
   Chien, Chih-Chun
   Mihaila, Bogdan
   Dawson, John F.
   Timmermans, Eddy
TI Nonperturbative Predictions for Cold Atom Bose Gases with Tunable
   Interactions
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID LIQUID-HELIUM; EINSTEIN CONDENSATION; O(N) MODEL; RECOMBINATION;
   TEMPERATURE
AB We derive a theoretical description for dilute Bose gases as a loop expansion in terms of composite-field propagators by rewriting the Lagrangian in terms of auxiliary fields related to the normal and anomalous densities. We demonstrate that already in leading order this nonperturbative approach describes a large interval of coupling-constant values, satisfies Goldstone's theorem, yields a Bose-Einstein transition that is second order, and is consistent with the critical temperature predicted in the weak-coupling limit by the next-to-leading-order large-N expansion.
C1 [Cooper, Fred; Chien, Chih-Chun; Mihaila, Bogdan; Timmermans, Eddy] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Cooper, Fred] Santa Fe Inst, Santa Fe, NM 87501 USA.
   [Dawson, John F.] Univ New Hampshire, Dept Phys, Durham, NH 03824 USA.
RP Cooper, F (reprint author), Los Alamos Natl Lab, POB 1663, Los Alamos, NM 87545 USA.
RI Mihaila, Bogdan/D-8795-2013
OI Mihaila, Bogdan/0000-0002-1489-8814
FU U.S. Department of Energy
FX This work was performed in part under the auspices of the U.S.
   Department of Energy. The authors thank E. Mottola and P. B. Littlewood
   for useful discussions.
NR 29
TC 19
Z9 19
U1 0
U2 1
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 7
PY 2010
VL 105
IS 24
AR 240402
DI 10.1103/PhysRevLett.105.240402
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713NK
UT WOS:000286744500002
PM 21231511
ER

PT J
AU Holsclaw, T
   Alam, U
   Sanso, B
   Lee, H
   Heitmann, K
   Habib, S
   Higdon, D
AF Holsclaw, Tracy
   Alam, Ujjaini
   Sanso, Bruno
   Lee, Herbert
   Heitmann, Katrin
   Habib, Salman
   Higdon, David
TI Nonparametric Dark Energy Reconstruction from Supernova Data
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID EXPANSION HISTORY; UNIVERSE; CONSTRAINTS; REDSHIFT
AB Understanding the origin of the accelerated expansion of the Universe poses one of the greatest challenges in physics today. Lacking a compelling fundamental theory to test, observational efforts are targeted at a better characterization of the underlying cause. If a new form of mass-energy, dark energy, is driving the acceleration, the redshift evolution of the equation of state parameter w(z) will hold essential clues as to its origin. To best exploit data from observations it is necessary to develop a robust and accurate reconstruction approach, with controlled errors, for w(z). We introduce a new, nonparametric method for solving the associated statistical inverse problem based on Gaussian process modeling and Markov chain Monte Carlo sampling. Applying this method to recent supernova measurements, we reconstruct the continuous history of w out to redshift z = 1.5.
C1 [Holsclaw, Tracy; Sanso, Bruno; Lee, Herbert] Univ Calif Santa Cruz, Dept Appl Math & Stat, Santa Cruz, CA 95064 USA.
   [Alam, Ujjaini; Heitmann, Katrin; Habib, Salman; Higdon, David] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
RP Holsclaw, T (reprint author), Univ Calif Santa Cruz, Dept Appl Math & Stat, Santa Cruz, CA 95064 USA.
FU DOE [W-7405-ENG-36]; LANL; NASA; LANL/UCSC Institute for Scalable
   Scientific Data Management
FX We thank the LANL/UCSC Institute for Scalable Scientific Data Management
   for supporting this work. Partial support by the DOE under contract
   W-7405-ENG-36 is also acknowledged. U. A., S. H., K. H., and DH
   acknowledge support from the LDRD program at LANL; K. H. acknowledges
   support from the NASA Theory program. S. H. and K. H. thank the Aspen
   Center for Physics, where part of this work was carried out. We are
   indebted to Andy Albrecht, Josh Frieman, Adrian Pope, Martin White, and
   Michael Wood-Vasey for insightful discussions.
NR 17
TC 53
Z9 53
U1 0
U2 6
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 7
PY 2010
VL 105
IS 24
AR 241302
DI 10.1103/PhysRevLett.105.241302
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713NK
UT WOS:000286744500004
PM 21231517
ER

PT J
AU Huang, XR
   Peng, RW
   Fan, RH
AF Huang, Xian-Rong
   Peng, Ru-Wen
   Fan, Ren-Hao
TI Making Metals Transparent for White Light by Spoof Surface Plasmons
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID EXTRAORDINARY OPTICAL-TRANSMISSION; SUBWAVELENGTH OPTICS; NARROW SLITS;
   GRATINGS
AB From first-principles computations we reveal that metallic gratings consisting of narrow slits may become transparent for extremely broad bandwidths under oblique incidence. This phenomenon can be explained by a concrete picture in which the incident wave drives free electrons on the conducting surfaces and part of the slit walls to form spoof surface plasmons (SSPs). The SSPs then propagate on the slit walls but are abruptly discontinued by the bottom edges to form oscillating charges that emit the transmitted wave. This picture explicitly demonstrates the conversion between light and SSPs and indicates clear guidelines for enhancing SSP excitation and propagation. Making structured metals transparent may lead to a variety of applications.
C1 [Huang, Xian-Rong] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
   [Peng, Ru-Wen; Fan, Ren-Hao] Nanjing Univ, Natl Lab Solid State Microstruct, Nanjing 210093, Peoples R China.
   [Peng, Ru-Wen; Fan, Ren-Hao] Nanjing Univ, Dept Phys, Nanjing 210093, Peoples R China.
RP Huang, XR (reprint author), Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
EM xiahuang@aps.anl.gov; rwpeng@nju.edu.cn
FU U.S. Department of Energy, Office of Science, Office of Basic Energy
   Sciences [DE-AC02-06CH11357]; NSFC [10625417, 11034005, 61077023,
   11021403]; MOST of China [2010CB630705]; Jiangsu Province [BK2008012]
FX We are grateful to Professor P. Lalanne for very helpful suggestions and
   discussions. This work was supported by the U.S. Department of Energy,
   Office of Science, Office of Basic Energy Sciences, under Contract No.
   DE-AC02-06CH11357, and by grants from the NSFC (Grants No. 10625417, No.
   11034005, No. 61077023, and No. 11021403), the MOST of China (Grant No.
   2010CB630705), and partly by Jiangsu Province (BK2008012).
NR 15
TC 66
Z9 66
U1 0
U2 30
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 7
PY 2010
VL 105
IS 24
AR 243901
DI 10.1103/PhysRevLett.105.243901
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713NK
UT WOS:000286744500007
PM 21231526
ER

PT J
AU Kramer, MJ
   Mendelev, MI
   Napolitano, RE
AF Kramer, M. J.
   Mendelev, M. I.
   Napolitano, R. E.
TI In Situ Observation of Antisite Defect Formation during Crystal Growth
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID CRYSTALLIZATION; SOLIDIFICATION; TRANSITION; ALLOYS; LIQUID; MODEL
AB In situ x-ray diffraction (XRD) coupled with molecular dynamics (MD) simulations have been used to quantify antisite defect trapping during crystallization. Rietveld refinement of the XRD data revealed a marked lattice distortion which involves an a axis expansion and a c axis contraction of the stable C11b phase. The observed lattice response is proportional in magnitude to the growth rate, suggesting that the behavior is associated with the kinetic trapping of lattice defects. MD simulations demonstrate that this lattice response is due to incorporation of 1% to 2% antisite defects during growth.
C1 [Kramer, M. J.; Mendelev, M. I.; Napolitano, R. E.] Ames Lab, Div Mat Sci & Engn, Ames, IA 50011 USA.
   [Kramer, M. J.; Napolitano, R. E.] Iowa State Univ, Dept Mat Sci & Engn, Ames, IA 50011 USA.
RP Kramer, MJ (reprint author), Ames Lab, Div Mat Sci & Engn, Ames, IA 50011 USA.
EM mjkramer@ameslab.gov; mendelev@ameslab.gov; ralphn@iastate.edu
FU U.S. Department of Energy, Office of Basic Energy Science, Division of
   Materials Sciences and Engineering; U.S. DOE [DE-AC02-07CH11358]; 
   [DE-AC02-06CH11357]
FX The authors gratefully acknowledge useful discussions with Professor P.
   A. Thiel and the assistance of M. Xu on sample preparation, I. Kalay on
   DSC, and E. Kalay on TEM. This work was supported by the U.S. Department
   of Energy, Office of Basic Energy Science, Division of Materials
   Sciences and Engineering. Ames Laboratory is operated for the U.S. DOE
   by Iowa State University under Contract No. DE-AC02-07CH11358. Use of
   the Advanced Photon Source was supported under Contract No.
   DE-AC02-06CH11357.
NR 14
TC 4
Z9 4
U1 3
U2 15
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 7
PY 2010
VL 105
IS 24
AR 245501
DI 10.1103/PhysRevLett.105.245501
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713NK
UT WOS:000286744500008
PM 21231532
ER

PT J
AU Erdelyi, B
AF Erdelyi, B.
TI Electron density uncertainties in proton computed tomography
SO PHYSICS IN MEDICINE AND BIOLOGY
LA English
DT Article
ID LARGE ENERGY LOSSES; RADIOLOGICAL APPLICATIONS; STRAGGLING
   DISTRIBUTIONS; PATH FORMALISM; LINE INTEGRALS; LIKELY PATH;
   RECONSTRUCTION; REPRESENTATION; PARTICLE; THERAPY
AB An expression is derived for the electron density resolution of proton computed tomography obtained from algebraic reconstruction methods. The dependence of the resolution on system parameters is clarified and methods for achieving the best resolutions possible are suggested. Comparison of our results with previous ones from the literature is included as well as a discussion of the limitations of the results.
C1 [Erdelyi, B.] No Illinois Univ, Dept Phys, De Kalb, IL 60115 USA.
   [Erdelyi, B.] Argonne Natl Lab, Div Phys, Argonne, IL 60439 USA.
RP Erdelyi, B (reprint author), No Illinois Univ, Dept Phys, De Kalb, IL 60115 USA.
EM erdelyi@nicadd.niu.edu
FU DOD [W81XWH-08-1-0205]
FX This work was supported in part by DOD under contract W81XWH-08-1-0205.
NR 24
TC 1
Z9 1
U1 0
U2 1
PU IOP PUBLISHING LTD
PI BRISTOL
PA TEMPLE CIRCUS, TEMPLE WAY, BRISTOL BS1 6BE, ENGLAND
SN 0031-9155
J9 PHYS MED BIOL
JI Phys. Med. Biol.
PD DEC 7
PY 2010
VL 55
IS 23
BP 7121
EP 7134
DI 10.1088/0031-9155/55/23/S12
PG 14
WC Engineering, Biomedical; Radiology, Nuclear Medicine & Medical Imaging
SC Engineering; Radiology, Nuclear Medicine & Medical Imaging
GA 680UN
UT WOS:000284261000013
PM 21076188
ER

PT J
AU Volkow, ND
   Fowler, JS
   Wang, GJ
   Shumay, E
   Telang, F
   Thanos, PK
   Alexoff, D
AF Volkow, Nora D.
   Fowler, Joanna S.
   Wang, Gene-Jack
   Shumay, Elena
   Telang, Frank
   Thanos, Peter K.
   Alexoff, David
TI Distribution and Pharmacokinetics of Methamphetamine in the Human Body:
   Clinical Implications
SO PLOS ONE
LA English
DT Article
ID AMPHETAMINE; PET; DOPAMINE; SMOKING; COCAINE; BINDING; MICE
AB Background: Methamphetamine is one of the most toxic of the drugs of abuse, which may reflect its distribution and accumulation in the body. However no studies have measured methamphetamine's organ distribution in the human body.
   Methods: Positron Emission Tomography (PET) was used in conjunction with [(11)C]d-methamphetamine to measure its whole-body distribution and bioavailability as assessed by peak uptake (% Dose/cc), rate of clearance (time to reach 50% peak-clearance) and accumulation (area under the curve) in healthy participants (9 Caucasians and 10 African Americans).
   Results: Methamphetamine distributed through most organs. Highest uptake (whole organ) occurred in lungs (22% Dose; weight similar to 1246 g), liver (23%; weight similar to 1677 g) and intermediate in brain (10%; weight similar to 1600 g). Kidneys also showed high uptake (per/cc basis) (7%; weight 305 g). Methamphetamine's clearance was fastest in heart and lungs (7-16 minutes), slowest in brain, liver and stomach (>75 minutes), and intermediate in kidneys, spleen and pancreas (22-50 minutes). Lung accumulation of [(11)C]d-methamphetamine was 30% higher for African Americans than Caucasians (p<0.05) but did not differ in other organs.
   Conclusions: The high accumulation of methamphetamine, a potent stimulant drug, in most body organs is likely to contribute to the medical complications associated with methamphetamine abuse. In particular, we speculate that methamphetamine's high pulmonary uptake could render this organ vulnerable to infections (tuberculosis) and pathology (pulmonary hypertension). Our preliminary findings of a higher lung accumulation of methamphetamine in African Americans than Caucasians merits further investigation and questions whether it could contribute to the infrequent use of methamphetamine among African Americans.
C1 [Volkow, Nora D.] Natl Inst Drug Abuse, Bethesda, MD 20892 USA.
   [Volkow, Nora D.; Telang, Frank; Thanos, Peter K.] Natl Inst Alcohol Abuse & Alcoholism, Bethesda, MD USA.
   [Fowler, Joanna S.; Wang, Gene-Jack; Shumay, Elena; Alexoff, David] Brookhaven Natl Lab, Upton, NY 11973 USA.
RP Volkow, ND (reprint author), Natl Inst Drug Abuse, Bethesda, MD 20892 USA.
EM nvolkow@nida.nih.gov
FU National Institutes of Health (NIH), National Institute on Alcohol Abuse
   and Alcoholism, the National Institute on Drug Abuse [K05DA020001];
   Department of Energy;  [MO1RR10710]
FX This research was supported by the Intramural Research Program of the
   National Institutes of Health (NIH), National Institute on Alcohol Abuse
   and Alcoholism, the National Institute on Drug Abuse (K05DA020001) and
   infrastructure support from the Department of Energy and GCRC grant
   MO1RR10710. The funders had no role in study design, data collection and
   analysis, decision to publish, or preparation of the manuscript.
NR 36
TC 37
Z9 39
U1 1
U2 11
PU PUBLIC LIBRARY SCIENCE
PI SAN FRANCISCO
PA 185 BERRY ST, STE 1300, SAN FRANCISCO, CA 94107 USA
SN 1932-6203
J9 PLOS ONE
JI PLoS One
PD DEC 7
PY 2010
VL 5
IS 12
AR e15269
DI 10.1371/journal.pone.0015269
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 690XB
UT WOS:000285041800013
PM 21151866
ER

PT J
AU Hasan, NA
   Grim, CJ
   Haley, BJ
   Chun, J
   Alam, M
   Taviani, E
   Hoq, M
   Munk, AC
   Saunders, E
   Brettin, TS
   Bruce, DC
   Challacombe, JF
   Detter, JC
   Han, CS
   Xie, G
   Nair, GB
   Huq, A
   Colwell, RR
AF Hasan, Nur A.
   Grim, Christopher J.
   Haley, Bradd J.
   Chun, Jongsik
   Alam, Munirul
   Taviani, Elisa
   Hoq, Mozammel
   Munk, A. Christine
   Saunders, Elizabeth
   Brettin, Thomas S.
   Bruce, David C.
   Challacombe, Jean F.
   Detter, J. Chris
   Han, Cliff S.
   Xie, Gary
   Nair, G. Balakrish
   Huq, Anwar
   Colwell, Rita R.
TI Comparative genomics of clinical and environmental Vibrio mimicus
SO PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF
   AMERICA
LA English
DT Article
ID MANNOSE-SENSITIVE HEMAGGLUTININ; ZONULA-OCCLUDENS TOXIN; CHOLERAE
   EL-TOR; FILAMENTOUS PHAGE; ESCHERICHIA-COLI; SUPER-INTEGRONS; CTX-PHI;
   GENE; SEQUENCE; IDENTIFICATION
AB Whether Vibrio mimicus is a variant of Vibrio cholerae or a separate species has been the subject of taxonomic controversy. A genomic analysis was undertaken to resolve the issue. The genomes of V. mimicus MB451, a clinical isolate, and VM223, an environmental isolate, comprise ca. 4,347,971 and 4,313,453 bp and encode 3,802 and 3,290 ORFs, respectively. As in other vibrios, chromosome I (C-I) predominantly contains genes necessary for growth and viability, whereas chromosome II (C-II) bears genes for adaptation to environmental change. C-I harbors many virulence genes, including some not previously reported in V. mimicus, such as mannose-sensitive hemagglutinin (MSHA), and enterotoxigenic hemolysin (HlyA); C-II encodes a variant of Vibrio pathogenicity island 2 (VPI-2), and Vibrio seventh pandemic island II (VSP-II) cluster of genes. Extensive genomic rearrangement in C-II indicates it is a hot spot for evolution and genesis of speciation for the genus Vibrio. The number of virulence regions discovered in this study (VSP-II, MSHA, HlyA, type IV pilin, PilE, and integron integrase, IntI4) with no notable difference in potential virulence genes between clinical and environmental strains suggests these genes also may play a role in the environment and that pathogenic strains may arise in the environment. Significant genome synteny with prototypic pre-seventh pandemic strains of V. cholerae was observed, and the results of phylogenetic analysis support the hypothesis that, in the course of evolution, V. mimicus and V. cholerae diverged from a common ancestor with a prototypic sixth pandemic genomic backbone.
C1 [Hasan, Nur A.; Grim, Christopher J.; Haley, Bradd J.; Taviani, Elisa; Huq, Anwar; Colwell, Rita R.] Univ Maryland, Maryland Pathogen Res Inst, College Pk, MD 20742 USA.
   [Grim, Christopher J.; Colwell, Rita R.] Univ Maryland, Inst Adv Comp Studies, College Pk, MD 20742 USA.
   [Chun, Jongsik] Seoul Natl Univ, Sch Biol Sci, Seoul 151742, South Korea.
   [Chun, Jongsik] Seoul Natl Univ, Inst Microbiol, Seoul 151742, South Korea.
   [Alam, Munirul] Int Vaccine Inst, Seoul 151818, South Korea.
   [Alam, Munirul] Int Ctr Diarrhoeal Dis Res, Dhaka 1000, Bangladesh.
   [Hoq, Mozammel] Univ Dhaka, Dept Microbiol, Dhaka 1000, Bangladesh.
   [Munk, A. Christine; Saunders, Elizabeth; Brettin, Thomas S.; Bruce, David C.; Challacombe, Jean F.; Detter, J. Chris; Han, Cliff S.; Xie, Gary] Los Alamos Natl Lab, Genome Sci Grp, Biosci Div, Los Alamos, NM 87545 USA.
   [Nair, G. Balakrish] Natl Inst Cholera & Enter Dis, Kolkata 700010, India.
RP Colwell, RR (reprint author), Univ Maryland, Maryland Pathogen Res Inst, College Pk, MD 20742 USA.
EM rcolwell@umiacs.umd.edu
OI xie, gary/0000-0002-9176-924X
FU Korea Science and Engineering Foundation National Research Laboratory
   [R0A-2005-000-10110-0]; National Institutes of Health [1RO1A139129-01];
   National Oceanic and Atmospheric Administration, Oceans and Human Health
   Initiative [S0660009]; Intelligence Community; Korean government;
   Swedish government; Office of the Chief Scientist and National Institute
   of Allergy and Infectious Diseases Microbial Sequencing Centers
   [N01-AI-30001, N01-AI-40001]
FX This study was supported by the Korea Science and Engineering Foundation
   National Research Laboratory Program Grant R0A-2005-000-10110-0 (to
   J.C.), National Institutes of Health Grant 1RO1A139129-01 (to R. R. C.),
   National Oceanic and Atmospheric Administration, Oceans and Human Health
   Initiative Grant S0660009 (to R. R. C.), by the Intelligence Community
   Post-Doctoral Fellowship Program (C.J.G), and by the Korean and Swedish
   governments (to International Vaccine Institute). Funding for genome
   sequencing was provided by the Office of the Chief Scientist and
   National Institute of Allergy and Infectious Diseases Microbial
   Sequencing Centers Grants N01-AI-30001 and N01-AI-40001.
NR 54
TC 19
Z9 19
U1 3
U2 11
PU NATL ACAD SCIENCES
PI WASHINGTON
PA 2101 CONSTITUTION AVE NW, WASHINGTON, DC 20418 USA
SN 0027-8424
J9 P NATL ACAD SCI USA
JI Proc. Natl. Acad. Sci. U. S. A.
PD DEC 7
PY 2010
VL 107
IS 49
BP 21134
EP 21139
DI 10.1073/pnas.1013825107
PG 6
WC Multidisciplinary Sciences
SC Science & Technology - Other Topics
GA 690ZY
UT WOS:000285050800053
PM 21078967
ER

PT J
AU Nair, SK
   Zou, XQ
   Chia, EEM
   Zhu, JX
   Panagopoulos, C
   Ishida, S
   Uchida, S
AF Nair, Saritha K.
   Zou, Xingquan
   Chia, Elbert E. M.
   Zhu, Jian-Xin
   Panagopoulos, C.
   Ishida, S.
   Uchida, S.
TI Quasiparticle dynamics in overdoped Bi1.4Pb0.7Sr1.9CaCu2O8+delta:
   Coexistence of superconducting gap and pseudogap below T-c
SO PHYSICAL REVIEW B
LA English
DT Article
ID HIGH-TEMPERATURE SUPERCONDUCTORS; ENERGY-GAP; BI2SR2CACU2O8+DELTA;
   SPECTROSCOPY; EVOLUTION
AB Photoexcited quasiparticle relaxation dynamics in overdoped Bi2Sr2CaCu2O8+delta (T-c=65 K, hole doping p=0.22) single crystal is investigated as a function of temperature. We provide evidence of a similar to 22 meV pseudogap (T*approximate to 100 K) at this doping level. Moreover, this pseudogap vanishes at T*. Our data support the scenario where both the superconducting gap and pseudogap coexist in the superconducting state. Our results also suggest an increased scattering rate between electrons and spin fluctuations as the sample enters the pseudogap phase.
C1 [Nair, Saritha K.; Zou, Xingquan; Chia, Elbert E. M.; Panagopoulos, C.] Nanyang Technol Univ, Div Phys & Appl Phys, Sch Phys & Math Sci, Singapore 637371, Singapore.
   [Zhu, Jian-Xin] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Panagopoulos, C.] Univ Crete, Dept Phys, Iraklion 71003, Greece.
   [Panagopoulos, C.] FORTH, Iraklion 71003, Greece.
   [Ishida, S.; Uchida, S.] Univ Tokyo, Dept Phys, Bunkyo Ku, Tokyo 1130033, Japan.
RP Nair, SK (reprint author), Nanyang Technol Univ, Div Phys & Appl Phys, Sch Phys & Math Sci, Singapore 637371, Singapore.
RI Nair, Saritha/G-1224-2010; PANAGOPOULOS, CHRISTOS/G-8754-2011; Chia,
   Elbert/B-6996-2011
OI Nair, Saritha/0000-0002-7591-9527; Chia, Elbert/0000-0003-2066-0834
FU NNSA of the U.S. DOE at LANL [DE-AC52-06NA25396]; LANL LDRD; EURYI; MEXT
   [CT-2006-039047]; Singapore Ministry of Education Academic Research Fund
   Tier 1 [RG41/07]; Singapore Ministry of Education Academic Research Fund
   Tier 2 [ARC23/08]; National Research Foundation of Singapore
FX We acknowledge useful discussions with J. Demsar. This work was carried
   out under the auspices of the NNSA of the U.S. DOE at LANL under
   Contract No. DE-AC52-06NA25396, the LANL LDRD program, EURYI, MEXT under
   Grant No. CT-2006-039047, the Singapore Ministry of Education Academic
   Research Fund Tier 1 (RG41/07) and Tier 2 (ARC23/08), and the National
   Research Foundation of Singapore.
NR 26
TC 12
Z9 12
U1 1
U2 7
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2469-9950
EI 2469-9969
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 6
PY 2010
VL 82
IS 21
AR 212503
DI 10.1103/PhysRevB.82.212503
PG 4
WC Physics, Condensed Matter
SC Physics
GA 713MJ
UT WOS:000286741800001
ER

PT J
AU Dag, S
   Wang, LW
AF Dag, S.
   Wang, Lin-Wang
TI Atomic and electronic structures of nano- and amorphous CdS/Pt
   interfaces
SO PHYSICAL REVIEW B
LA English
DT Article
ID HYDROGEN-PRODUCTION; VISIBLE-LIGHT; MOLECULAR-DYNAMICS; BARRIER HEIGHTS;
   GAP STATES; PHOTOCATALYSTS; CONTACTS; CDSE
AB We used large scale ab initio molecular dynamics to study the atomic structures of realistic nano- and amorphous CdS/Pt interfaces. This involved a procedure to correct the local-density approximation band gap to calculate the Schottky barrier heights (SBHs) for nano, amorphous, and epitaxial interfaces. The resulting amorphous SBH closely corresponded to experimental findings. Large SBH differences between the amorphous and epitaxial interfaces were present, highlighting the importance of using realistic structural models.
C1 [Dag, S.; Wang, Lin-Wang] Univ Calif Berkeley, Lawrence Berkeley Lab, Computat Res Div, Sci Comp Grp, Berkeley, CA 94720 USA.
RP Dag, S (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Computat Res Div, Sci Comp Grp, Berkeley, CA 94720 USA.
EM sdag@lbl.gov
NR 25
TC 6
Z9 6
U1 1
U2 16
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 6
PY 2010
VL 82
IS 24
AR 241303
DI 10.1103/PhysRevB.82.241303
PG 4
WC Physics, Condensed Matter
SC Physics
GA 715OT
UT WOS:000286894500001
ER

PT J
AU Lee, H
   Cohen, ML
   Louie, SG
AF Lee, Hoonkyung
   Cohen, Marvin L.
   Louie, Steven G.
TI Selective functionalization of halogens on zigzag graphene nanoribbons:
   A route to the separation of zigzag graphene nanoribbons
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID CARBON NANOTUBES
AB Using the ab initio pseudopotential density functional method, we investigate the functionalization of halogen molecules into graphene-based nanostructures with zigzag and armchair edges. We find that halogen molecules adsorb through chemisorption on the zigzag edge carbon atoms with a binding energy of similar to 1-5 eV, in sharp contrast to physisorption on the armchair edge and elsewhere where they adsorb with a binding energy of similar to 0.07 eV. Our findings would be utilized for an approach to the separation of zigzag graphene nanoribbons with regular edges with the change of the solubility of the functionalized nanoribbons. (C) 2010 American Institute of Physics. [doi:10.1063/1.3523252]
C1 [Lee, Hoonkyung; Cohen, Marvin L.; Louie, Steven G.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Lee, Hoonkyung; Cohen, Marvin L.; Louie, Steven G.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
RP Lee, H (reprint author), Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
EM sglouie@berkeley.edu
FU NSF [DMR07-05941]; Director, Office of Science, Office of Basic Energy
   Sciences, Materials Sciences and Engineering Division, U.S. Department
   of Energy [DE-AC02-05CH11231]
FX H.L. was supported by NSF under Grant No. DMR07-05941. Numerical
   simulations were supported by the Director, Office of Science, Office of
   Basic Energy Sciences, Materials Sciences and Engineering Division, U.S.
   Department of Energy, under Contract No. DE-AC02-05CH11231.
   Computational resources were provided by NERSC and TeraGrid.
NR 13
TC 10
Z9 10
U1 1
U2 14
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 6
PY 2010
VL 97
IS 23
AR 233101
DI 10.1063/1.3523252
PG 3
WC Physics, Applied
SC Physics
GA 695IO
UT WOS:000285364000059
ER

PT J
AU Li, X
   Barry, EA
   Zavada, JM
   Nardelli, MB
   Kim, KW
AF Li, X.
   Barry, E. A.
   Zavada, J. M.
   Nardelli, M. Buongiorno
   Kim, K. W.
TI Surface polar phonon dominated electron transport in graphene
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID TRANSISTORS
AB The effects of surface polar phonons on the electronic transport properties of monolayer graphene are studied by using a Monte Carlo simulation. Specifically, the low-field electron mobility and saturation velocity are examined for different substrates (SiC, SiO2, and HfO2) in comparison to the intrinsic case. While the results show that the low-field mobility can be substantially reduced by the introduction of surface polar phonon scattering, corresponding degradation of the saturation velocity is not observed for all three substrates at room temperature. It is also found that surface polar phonons can influence graphene's electrical resistivity even at low temperature, leading potentially to inaccurate estimation of the acoustic phonon deformation potential constant. (C) 2010 American Institute of Physics. [doi:10.1063/1.3525606]
C1 [Li, X.; Zavada, J. M.; Kim, K. W.] N Carolina State Univ, Dept Elect & Comp Engn, Raleigh, NC 27695 USA.
   [Barry, E. A.] USA, Res Lab, Weapons & Mat Res Directorate, Aberdeen Proving Ground, MD 21005 USA.
   [Nardelli, M. Buongiorno] Oak Ridge Natl Lab, CSMD, Oak Ridge, TN 37831 USA.
   [Nardelli, M. Buongiorno] N Carolina State Univ, Dept Phys, Raleigh, NC 27695 USA.
RP Li, X (reprint author), N Carolina State Univ, Dept Elect & Comp Engn, Raleigh, NC 27695 USA.
EM kwk@ncsu.edu
RI Buongiorno Nardelli, Marco/C-9089-2009
FU Defense Advanced Research Projects Agency/HRL Laboratories; U.S. Army
   Research Office; SRC Focus Center on Functional Engineered Nano
   Architectonics (FENA); Office of Basic Energy Sciences, U. S. DOE at Oak
   Ridge National Laboratory [DE-AC05-00OR22725]; UT-Battelle, LLC; NSF
FX This work was supported, in part, by the Defense Advanced Research
   Projects Agency/HRL Laboratories (the CERA program), by the U.S. Army
   Research Office, and by the SRC Focus Center on Functional Engineered
   Nano Architectonics (FENA). M.B.N. wishes to acknowledge partial support
   from the Office of Basic Energy Sciences, U. S. DOE at Oak Ridge
   National Laboratory under Contract No. DE-AC05-00OR22725 with
   UT-Battelle, LLC. J.M.Z. acknowledges support from NSF under the IR/D
   program.
NR 17
TC 56
Z9 56
U1 3
U2 17
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 6
PY 2010
VL 97
IS 23
AR 232105
DI 10.1063/1.3525606
PG 3
WC Physics, Applied
SC Physics
GA 695IO
UT WOS:000285364000040
ER

PT J
AU Paul, S
   Nardelli, MB
AF Paul, Sujata
   Nardelli, Marco Buongiorno
TI Rational computational design of optimal catalytic surfaces
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID SCHOTTKY-BARRIER
AB Using calculations from first-principles based on density functional theory, we introduce an innovative concept for the design of catalysts based on the tuning of the surface properties by progressive layering of thin metal films on an oxide support, where the substrate is substantially exploited as an active design element for the tuning of the reactivity of the metallic surface. We demonstrate this idea by studying the adsorption and activation properties of CO2 on Pd and oxide-supported Pd thin films. (C) 2010 American Institute of Physics. [doi:10.1063/1.3525372]
C1 [Paul, Sujata; Nardelli, Marco Buongiorno] N Carolina State Univ, Dept Phys, Raleigh, NC 27695 USA.
   [Nardelli, Marco Buongiorno] Oak Ridge Natl Lab, Comp Sci & Math Div, Oak Ridge, TN 37831 USA.
RP Nardelli, MB (reprint author), N Carolina State Univ, Dept Phys, Raleigh, NC 27695 USA.
EM mbnardelli@ncsu.edu
RI Buongiorno Nardelli, Marco/C-9089-2009; 
OI Buongiorno Nardelli, Marco/0000-0003-0793-5055
FU NSF; BES, U.S. DOE at ORNL [DE-FG02-98ER14847, DE-AC05-00OR22725]
FX This work has been supported in part by NSF and by BES, U.S. DOE at ORNL
   (Contract Nos. DE-FG02-98ER14847 and DE-AC05-00OR22725 with UT-Battelle,
   LLC). Calculations have been carried out at NCCS-ORNL.
NR 16
TC 2
Z9 2
U1 0
U2 7
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 6
PY 2010
VL 97
IS 23
AR 233108
DI 10.1063/1.3525372
PG 3
WC Physics, Applied
SC Physics
GA 695IO
UT WOS:000285364000066
ER

PT J
AU Solovyov, VF
   Gibert, M
   Puig, T
   Obradors, X
AF Solovyov, Vyacheslav F.
   Gibert, Marta
   Puig, Teresa
   Obradors, Xavier
TI Size-dependent strain in epitaxial (001) gadolinium-doped ceria
   nanoislands
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID NANOPARTICLES; GROWTH; SHAPE
AB We report size-dependent strain in epitaxial gadolinium doped ceria nanoislands, which was determined by synchrotron x-ray diffraction. Reciprocal space sections of symmetric, (004) and asymmetric, (224) reflections are approximated by a model assuming size-dependent strain of the islands using real-space size distribution obtained by atomic force microscopy. We show that the islands smaller than 40 nm are subjected to a high level of lateral tensile strain and normal compression. The lateral to normal strain ratio determined from the reciprocal map analysis suggests that lateral tension is the primary stress generator, possibly due to oxygen vacancy ordering on the island-substrate interface. (C) 2010 American Institute of Physics. [doi:10.1063/1.3527079]
C1 [Solovyov, Vyacheslav F.] Brookhaven Natl Lab, Dept Condensed Matter Phys & Mat Sci, Upton, NY 11973 USA.
   [Gibert, Marta; Puig, Teresa; Obradors, Xavier] CSIC, Inst Ciencia Mat Barcelona, Bellaterra 08193, Catalonia, Spain.
RP Solovyov, VF (reprint author), Brookhaven Natl Lab, Dept Condensed Matter Phys & Mat Sci, Upton, NY 11973 USA.
EM solov@bnl.gov
RI Obradors, Xavier/A-8146-2012; Solovyov, Vyacheslav/A-7724-2009; Puig,
   Teresa/O-1077-2013; Gibert, Marta/A-2317-2016; 
OI Puig, Teresa/0000-0002-1873-0488; Gibert, Marta/0000-0001-8856-6831;
   Solovyov, Vyacheslav/0000-0003-1879-9802
FU U.S. Department of Energy [DE-AC02-98CH10886]; Spanish MICINN
   [MAT2008-01022]; Generalitat de Catalunya [SGR-770]; EU
FX This paper has been authored by Brookhaven Science Associates, LLC under
   Contract No. DE-AC02-98CH10886 with the U.S. Department of Energy.
   Research was carried out in part at the Center for Functional
   Nanomaterials and National Synchrotron Light Source (Beamline X-18A). We
   acknowledge the financial support from Spanish MICINN (Grant No.
   MAT2008-01022 and Consolider NANOSELECT), Generalitat de Catalunya
   (Catalan Pla de Recerca SGR-770 and XaRMAE), and EU (HIPERCHEM and
   NESPA).
NR 15
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U1 1
U2 6
PU AMER INST PHYSICS
PI MELVILLE
PA CIRCULATION & FULFILLMENT DIV, 2 HUNTINGTON QUADRANGLE, STE 1 N O 1,
   MELVILLE, NY 11747-4501 USA
SN 0003-6951
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 6
PY 2010
VL 97
IS 23
AR 231904
DI 10.1063/1.3527079
PG 3
WC Physics, Applied
SC Physics
GA 695IO
UT WOS:000285364000030
ER

PT J
AU Tasnadi, F
   Abrikosov, IA
   Rogstrom, L
   Almer, J
   Johansson, MP
   Oden, M
AF Tasnadi, Ferenc
   Abrikosov, Igor A.
   Rogstrom, Lina
   Almer, Jonathan
   Johansson, Mats P.
   Oden, Magnus
TI Significant elastic anisotropy in Ti1-xAlxN alloys
SO APPLIED PHYSICS LETTERS
LA English
DT Article
ID SPINODAL DECOMPOSITION; MECHANICAL-PROPERTIES; COATINGS; STRESS
AB Strong compositional-dependent elastic properties have been observed theoretically and experimentally in Ti1-xAlxN alloys. The elastic constant, C-11, changes by more than 50% depending on the Al-content. Increasing the Al-content weakens the average bond strength in the local octahedral arrangements resulting in a more compliant material. On the other hand, it enhances the directional (covalent) nature of the nearest neighbor bonds that results in greater elastic anisotropy and higher sound velocities. The strong dependence of the elastic properties on the Al-content offers new insight into the detailed understanding of the spinodal decomposition and age hardening in Ti1-xAlxN alloys. (C) 2010 American Institute of Physics. [doi: 10.1063/1.3524502]
C1 [Tasnadi, Ferenc; Abrikosov, Igor A.; Rogstrom, Lina; Johansson, Mats P.; Oden, Magnus] Linkoping Univ, Dept Phys Chem & Biol IFM, SE-58183 Linkoping, Sweden.
   [Almer, Jonathan] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
RP Tasnadi, F (reprint author), Linkoping Univ, Dept Phys Chem & Biol IFM, SE-58183 Linkoping, Sweden.
EM tasnadi@ifm.liu.se
RI Oden, Magnus/E-9662-2010; Tasnadi, Ferenc/B-5280-2012; 
OI Oden, Magnus/0000-0002-2286-5588; Tasnadi, Ferenc/0000-0001-6373-5109;
   Rogstrom, Lina/0000-0002-0866-1909
FU SSF project Designed Multicomponent coatings, MultiFilms; Swedish
   Research Council (VR); U.S. Department of Energy, Office of Science,
   Office of Basic Energy Sciences [DE-AC02-06CH11357]
FX This work was supported by the SSF project Designed Multicomponent
   coatings, MultiFilms and the Swedish Research Council (VR). Use of the
   Advanced Photon Source was supported by the U.S. Department of Energy,
   Office of Science, Office of Basic Energy Sciences under Contract No.
   DE-AC02-06CH11357. Calculations have been performed at Swedish National
   Infrastructure for Computing (SNIC).
NR 24
TC 42
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U1 3
U2 14
PU AMER INST PHYSICS
PI MELVILLE
PA 1305 WALT WHITMAN RD, STE 300, MELVILLE, NY 11747-4501 USA
SN 0003-6951
EI 1077-3118
J9 APPL PHYS LETT
JI Appl. Phys. Lett.
PD DEC 6
PY 2010
VL 97
IS 23
AR 231902
DI 10.1063/1.3524502
PG 3
WC Physics, Applied
SC Physics
GA 695IO
UT WOS:000285364000028
ER

PT J
AU Boyle, TJ
   Ottley, LAM
   Hoppe, SM
AF Boyle, Timothy J.
   Ottley, Leigh Anna M.
   Hoppe, Sarah M.
TI Series of Comparable Dinuclear Group 4 Neo-pentoxide Precursors for
   Production of pH Dependent Group 4 Nanoceramic Morphologies
SO INORGANIC CHEMISTRY
LA English
DT Article
ID X-RAY STRUCTURES; RING-OPENING POLYMERIZATION; OXIDE THIN-FILMS;
   ALKOXIDE PRECURSORS; STRUCTURAL-CHARACTERIZATION; TITANIUM(IV)
   NEOPENTOXIDES; CREVICE COORDINATION; MOLECULAR CREVICE; CERAMIC
   MATERIALS; LIGAND MOLECULE
AB A series of similarly structured Group 4 alkoxides was used to explore the cation effect on the final ceramic nanomaterials generated under different pH solvothermal (SOLVO) conditions. The synthesis of [Ti(mu-ONep)-(ONep)(3)](2) (1, ONep = OCH2C(CH3)(3)) and {[H][mu-ONeP)(3)M-2(ONaP)(5)(OBut)]} where M = Zr (2) and Hf (3, OBut = OC(CH3)(3)) were realized from the reaction of M(OBut)(4) (M = Ti, Zr, Hf) and H-ONep. Crystallization of 1 from py led to the isolation of [Ti(mu-ONep)(ONep)(3)](2)(mu-py) (1a) whereas the dissolution of 2 or 3 in py yielded {(mu-O)(mu(3)-OBut)[(mu-ONep)M(ONep)(2)](3)} M = Zr (2a) and Hf (3a). The structurally similar congener set of 1-3 was used to investigate variations of their resultant nanomaterials under solvothermal conditions at high (10 M KOH), low (conc. (aq) HI), and neutral (H2O) pH conditions. Reproducible nanodots, -squares, and -rods of varied aspect ratios were isolated based on cation and the reaction pH. The hydrolysis products were reasoned to be the "seed" nucleation sites in these processes, and studying the hydrolysis behavior of 1-3 led to the identification of [Ti-6(mu(3)-O)(7)(mu-O)(mu-ONep)(2)(ONep)(6)](2) (1b) for 1 but yielded 2a and 3a for 2 and 3, respectively. A correlation was found to exist between these products and the final nanomaterials formed for the acidic and neutral processes. The basic route appears to be further influenced by another property, possibly associated with the solubility of the final nanoceramic material.
C1 [Boyle, Timothy J.; Ottley, Leigh Anna M.; Hoppe, Sarah M.] Sandia Natl Labs, Adv Mat Lab, Albuquerque, NM 87106 USA.
RP Boyle, TJ (reprint author), Sandia Natl Labs, Adv Mat Lab, 1001 Univ Blvd SE, Albuquerque, NM 87106 USA.
EM tjboyle@sandia.gov
OI Campana, Charles/0000-0002-0495-0922
FU Sandia National Laboratories, Office of Basic Energy Sciences, Division
   of Materials Sciences; U.S. Department of Energy [DE-AC04-94AL85000]
FX For support of this research, the authors thank H. D. Pratt III and J.
   G. Griego for technical support, the Laboratory Directed Research and
   Development (LDRD) program at Sandia National Laboratories, the Office
   of Basic Energy Sciences, Division of Materials Sciences, and the U.S.
   Department of Energy under Contract DE-AC04-94AL85000. Sandia is a
   multiprogram laboratory operated by Sandia Corporation, a Lockheed
   Martin Company, for the United States Department of Energy.
NR 79
TC 13
Z9 13
U1 1
U2 9
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0020-1669
J9 INORG CHEM
JI Inorg. Chem.
PD DEC 6
PY 2010
VL 49
IS 23
BP 10798
EP 10808
DI 10.1021/ic101205d
PG 11
WC Chemistry, Inorganic & Nuclear
SC Chemistry
GA 684AG
UT WOS:000284518800010
PM 21067226
ER

PT J
AU Simpson, CA
   Farrow, CL
   Tian, P
   Billinge, SJL
   Huffman, BJ
   Harkness, KM
   Cliffel, DE
AF Simpson, Carrie A.
   Farrow, Christopher L.
   Tian, Peng
   Billinge, Simon J. L.
   Huffman, Brian J.
   Harkness, Kellen M.
   Cliffel, David E.
TI Tiopronin Gold Nanoparticle Precursor Forms Aurophilic Ring Tetramer
SO INORGANIC CHEMISTRY
LA English
DT Article
ID PAIR DISTRIBUTION FUNCTION; CRYSTAL-STRUCTURE; CLUSTER MOLECULES;
   METAL-COMPLEXES; SOLID-STATE; CORE SIZE; NANOCLUSTERS; MONOLAYERS; NMR;
   APPROXIMATION
AB In the two step synthesis of thiolate-monolayer protected clusters (MPCs), the first step of the reaction is a mild reduction of gold(III) by thiols that generates gold(I) thiolate complexes as intermediates. Using tiopronin (Tio) as the thiol reductant, the characterization of the intermediate Au(4)Tio(4) complex was accomplished with various analytical and structural techniques. Nuclear magnetic resonance (NMR), elemental analysis, thermogravimetric analysis (TGA), and matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS) were all consistent with a cyclic gold(I)-thiol tetramer structure, and final structural analysis was gathered through the use of powder diffraction and pair distribution functions (PDF). Crystallographic data has proved challenging for almost all previous gold(I)-thiolate complexes. Herein, a novel characterization technique when combined with standard analytical assessment to elucidate structure without crystallographic data proved invaluable to the study of these complexes. This in conjunction with other analytical techniques, in particular mass spectrometry, can elucidate a structure when crystallographic data is unavailable. In addition, luminescent properties provided evidence of aurophilicity within the molecule. The concept of aurophilicity has been introduced to describe a select group of gold thiolate structures, which possess unique characteristics, mainly red photoluminescence and a distinct Au-Au intramolecular distance indicating a weak metal metal bond as also evidenced by the structural model of the tetramer. Significant features of both the tetrameric and the aurophilic properties of the intermediate gold(I) tiopronin complex are retained after borohydride reduction to form the MPC, including gold(I) tiopronin partial rings as capping motifs, or "staples", and weak red photoluminescence that extends into the Near Infrared region.
C1 [Simpson, Carrie A.; Huffman, Brian J.; Harkness, Kellen M.; Cliffel, David E.] Vanderbilt Univ, Dept Chem, Nashville, TN 37235 USA.
   [Farrow, Christopher L.; Billinge, Simon J. L.] Columbia Univ, Dept Appl Phys & Appl Math, New York, NY 10027 USA.
   [Tian, Peng] Michigan State Univ, Dept Phys & Astron, E Lansing, MI 48824 USA.
   [Billinge, Simon J. L.] Brookhaven Natl Lab, Condensed Matter Phys & Mat Sci Dept, Upton, NY 11973 USA.
RP Cliffel, DE (reprint author), Vanderbilt Univ, Dept Chem, Box 1583, Nashville, TN 37235 USA.
EM david.e.cliffel@vanderbilt.edu
RI Harkness, Kellen/D-8560-2011
FU National Institutes of Health [T32 GM065086]; U.S. National Science
   Foundation [DMR-0703940]; U.S. Department of Energy, Office of Science,
   Office of Basic Energy Sciences [W-31-109-Eng-38]
FX This work was made possible by the National Institutes of Health (R01
   GM076479), a Chemical Biology Interface Training Grant from the National
   Institutes of Health (T32 GM065086) (K.M.H.), and the Vanderbilt
   Institute of Nanoscale Science and Engineering. We would like to thank
   Stephen Chmely and Dr. Timothy Hanusa for their help with the molecular
   modeling. We would also like to acknowledge Emil Bozin, Pavol Juhas, and
   Timur Dykhne for help with PDF data collection. The PDF work was
   supported by the U.S. National Science Foundation through Grant
   DMR-0703940. Use of the Advanced Photon Source was supported by the U.S.
   Department of Energy, Office of Science, Office of Basic Energy
   Sciences, under Contract No. W-31-109-Eng-38.
NR 56
TC 33
Z9 33
U1 2
U2 32
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0020-1669
J9 INORG CHEM
JI Inorg. Chem.
PD DEC 6
PY 2010
VL 49
IS 23
BP 10858
EP 10866
DI 10.1021/ic101146e
PG 9
WC Chemistry, Inorganic & Nuclear
SC Chemistry
GA 684AG
UT WOS:000284518800017
PM 21067183
ER

PT J
AU Boukhvalov, DW
   Dobrovitski, VV
   Kogerler, P
   Al-Saqer, M
   Katsnelson, MI
   Lichtenstein, AI
   Harmon, BN
AF Boukhvalov, Danil W.
   Dobrovitski, Viatcheslav V.
   Koegerler, Paul
   Al-Saqer, Mohammad
   Katsnelson, Mikhail I.
   Lichtenstein, Alexander I.
   Harmon, Bruce N.
TI Effect of Ligand Substitution on the Exchange Interactions in
   {Mn-12}-Type Single-Molecule Magnets
SO INORGANIC CHEMISTRY
LA English
DT Article
ID HIGH-SPIN MOLECULES; MN-12; MAGNETIZATION; COMPLEXES; NANOMAGNETS;
   CARBOXYLATE; RELAXATION; SYMMETRY; FE-8
AB We investigate how ligand substitution affects the intramolecular spin exchange interactions, studying a prototypical family of single-molecule magnets comprising dodecanuclear cluster molecules [(Mn8Mn4O12)-Mn-III-O-IV(COOR)(16)]. We identify a simple scheme based on accumulated Pauling electronegativity numbers (AEN) of the carboxylate ligand groups (R). The redistribution of the electron density, controlled by the AEN of a ligand, changes the degree of hybridization between 3d electrons of manganese and 2p electrons of oxygen atoms, thus changing the exchange interactions. This scheme, despite its conceptual simplicity, provides a strong correlation with the exchange energies associated with carboxylate bridges and is confirmed by the electronic structure calculations taking into account the Coulomb correlations in magnetic molecules.
C1 [Boukhvalov, Danil W.] Natl Inst Mat Sci, Computat Mat Sci Ctr, Tsukuba, Ibaraki 3050047, Japan.
   [Boukhvalov, Danil W.; Katsnelson, Mikhail I.] Radboud Univ Nijmegen, Inst Mol & Mat, NL-6525 AJ Nijmegen, Netherlands.
   [Dobrovitski, Viatcheslav V.; Koegerler, Paul; Al-Saqer, Mohammad; Harmon, Bruce N.] Iowa State Univ, Ames Lab, Ames, IA 50011 USA.
   [Koegerler, Paul] Rhein Westfal TH Aachen, Inst Inorgan Chem, D-52074 Aachen, Germany.
   [Lichtenstein, Alexander I.] Univ Hamburg, Inst Theoret Phys, D-20355 Hamburg, Germany.
RP Boukhvalov, DW (reprint author), Natl Inst Mat Sci, Computat Mat Sci Ctr, 1-2-1 Sengen, Tsukuba, Ibaraki 3050047, Japan.
EM D.Bukhvalov@science.ru.nl
RI Katsnelson, Mikhail/D-4359-2012; Kogerler, Paul/H-5866-2013;
   Lichtenstein, Alexander/K-8730-2012
OI Kogerler, Paul/0000-0001-7831-3953; Lichtenstein,
   Alexander/0000-0003-0152-7122
FU Stichting voor Fundamenteel Onderzoek der Materie (FOM), The
   Netherlands; Department of Energy<SUP>-</SUP>Basic Energy Sciences
   [DE-AC02-07CH11358]
FX The work is financially supported by Stichting voor Fundamenteel
   Onderzoek der Materie (FOM), The Netherlands. Work at the Ames
   Laboratory was supported by the Department of Energy<SUP>-</SUP>Basic
   Energy Sciences under Contract No. DE-AC02-07CH11358.
NR 47
TC 14
Z9 14
U1 1
U2 18
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0020-1669
J9 INORG CHEM
JI Inorg. Chem.
PD DEC 6
PY 2010
VL 49
IS 23
BP 10902
EP 10906
DI 10.1021/ic101229p
PG 5
WC Chemistry, Inorganic & Nuclear
SC Chemistry
GA 684AG
UT WOS:000284518800022
PM 21043473
ER

PT J
AU Kang, P
   Bobyr, E
   Dustman, J
   Hodgson, KO
   Hedman, B
   Solomon, EI
   Stack, TDP
AF Kang, Peng
   Bobyr, Elena
   Dustman, John
   Hodgson, Keith O.
   Hedman, Britt
   Solomon, Edward I.
   Stack, T. Daniel P.
TI Bis(mu-oxo) Dicopper(III) Species of the Simplest Peralkylated Diamine:
   Enhanced Reactivity toward Exogenous Substrates
SO INORGANIC CHEMISTRY
LA English
DT Article
ID SIDE-ON PEROXO; BIS(MU-OXO)DICOPPER(III) COMPLEX; MOLECULAR-STRUCTURES;
   COPPER(I) COMPLEXES; DIOXYGEN; CORE; DENSITY; MODEL; BOND; OXO
AB N,N,N,N-tetramethylethylenediamine (TMED), the simplest and most extensively used peralkylated diamine ligand, is conspicuously absent from those known to form a bis(mu-oxo)dicopper(III) (O) species, [(TMED)(2)Cu(III)(2)(mu(2)-O)(2)](2+), upon oxygenation of its Cu(I) complex. Presented here is the characterization of this O species and its reactivity toward exogenous substrates. Its formation is complicated both by the instability of the [(TMED)Cu(I)(1+) precursor and by competitive formation of a presumed mixed-valent trinuclear [(TMED)(3)Cu(III)Cu(II)(2)(mu(3)-O)(2)](3+)(T) species. Under most reaction conditions, the T species dominates, yet, the O species can be formed preferentially (>80%) upon oxygenation of acetone solutions, if the copper concentration is low (<2 mM) and [(TMED)Cu(I)](1+) is prepared immediately before use. The experimental data of this simplest O species provide a benchmark by which to evaluate density functional theory (DFT) computational methods for geometry optimization and spectroscopic predictions. The enhanced thermal stability of [(TMED)(2)Cu(III)(2)(mu(2)-O)(2)](2+) and its limited steric demands compared to other O species allows more efficient oxidation of exogenous substrates, including benzyl alcohol to benzaldehyde (80% yield), highlighting the importance of ligand structure to not only enhance the oxidant stability but also maintain accessibility to the nascent metal/O(2) oxidant.
C1 [Kang, Peng; Bobyr, Elena; Dustman, John; Hodgson, Keith O.; Solomon, Edward I.; Stack, T. Daniel P.] Stanford Univ, Dept Chem, Stanford, CA 94305 USA.
   [Hodgson, Keith O.; Hedman, Britt; Solomon, Edward I.] Stanford Univ, Stanford Synchrotron Radiat Lightsource, SLAC, Menlo Pk, CA 94025 USA.
RP Hodgson, KO (reprint author), Stanford Univ, Dept Chem, Stanford, CA 94305 USA.
EM hodgson@ssrl.slac.stanford.edu; hedman@ssrl.slac.stanford.edu;
   edward.solomon@stanford.edu; stack@stanford.edu
RI Bobyr, Elena/C-4269-2008; Kang, Peng/H-4708-2011
OI Kang, Peng/0000-0002-6639-8299
FU NIH [GM50730, DK31450, RR-01209]; Department of Energy, Office of Basic
   Energy Sciences; National Institutes of Health, National Center for
   Research Resources; Department of Energy, Office of Biological and
   Environmental Research; National Center for Research Resources (NCRR) [5
   P41 RR001209]
FX Funding was provided by the NIH GM50730 (T.D.P.S.), NIH DK31450 (EIS.),
   and NIH RR-01209 (K.O.H.). XAS data were measured at SSRL that is
   supported by the Department of Energy, Office of Basic Energy Sciences.
   The Structural Molecular Biology program at SSRL is funded by the
   National Institutes of Health, National Center for Research Resources,
   Biomedical Technology Program, and the Department of Energy, Office of
   Biological and Environmental Research. This publication was made
   possible by Grant 5 P41 RR001209 from the National Center for Research
   Resources (NCRR), a component of the National Institutes of Health
   (NIH). Its contents are solely the responsibility of the authors and do
   not necessarily represent the official view of NCRR or NIH.
NR 55
TC 27
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U1 3
U2 24
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0020-1669
J9 INORG CHEM
JI Inorg. Chem.
PD DEC 6
PY 2010
VL 49
IS 23
BP 11030
EP 11038
DI 10.1021/ic101515g
PG 9
WC Chemistry, Inorganic & Nuclear
SC Chemistry
GA 684AG
UT WOS:000284518800037
PM 21028910
ER

PT J
AU Stewart, CA
   Dickie, DA
   Parkes, MV
   Saria, JA
   Kemp, RA
AF Stewart, Constantine A.
   Dickie, Diane A.
   Parkes, Marie V.
   Saria, Josephat A.
   Kemp, Richard A.
TI Reactivity of Bis(2,2,5,5-tetramethyl-2,5-disila-1-azacyclopent-1-yl)tin
   with CO2, OCS, and CS2 and Comparison to That of
   Bis[bis(trimethylsilyl)amido]tin
SO INORGANIC CHEMISTRY
LA English
DT Article
ID MOLECULAR-ORBITAL METHODS; CRYSTAL X-RAY; CARBON-DIOXIDE;
   STRUCTURAL-CHARACTERIZATION; ELECTRON-DIFFRACTION; CARBAMATO COMPLEXES;
   DIMETHYL CARBONATE; N BONDS; ZINC; CATALYSTS
AB The heterocumulenes carbon dioxide (CO2), carbonyl sulfide (OCS), and carbon disulfide (CS2) were treated with bis(2,2,5,5-tetramethyl-2,5-disila-1-azacyclopent-1-yl)tin {[(CH2)Me2Si](2)N}(2)Sn, an analogue of the well-studied bis[bis(trimethylsilyl)amido]tin species [(Me3Si)(2)N](2)Sn, to yield an unexpectedly diverse product slate. Reaction of {[(CH2)Me2Si](2)N}(2)Sn with CO2 resulted in the formation of 2,2,5,5-tetramethyl-2,5-disila-1-oxacyclopentane, along with Sn-4(mu(4)-O){mu(2)-O2CN[SiMe2(CH2)(2)]}4(mu(2)-N=C=O)(2) as the primary organometallic Sn-containing product. The reaction of {[(CH2)Me2Si](2)N}(2)Sn with CS2 led to formal reduction of CS2 to [CS2](2-), yielding [{[(CH2)Me2Si](2)N}(2)Sn](2)CS2{[(CH2)Me2Si](2)N}(2)Sn, in which the [CS2](2-) is coordinated through C and S to two tin centers. The product [{[(CH2)Me2Si](2)N}(2)Sn](2)CS2{[(CH2)Me2Si](2)N}(2)Sn also contains a novel 4-membered Sn-Sn-C-S ring, and exhibits a further bonding interaction through sulfur to a third Sn atom. Reaction of DOS with {[(CH2)Me2Si](2)N}(2)Sn resulted in an insoluble polymeric material. In a comparison reaction, [(Me3Si)(2)N](2)Sn was treated with OCS to yield Sn-4(mu(4)-O)(mu(2)-OSiMe3)(5)(eta(1)-N=C=S). A combination of NMR and IR spectroscopy, mass spectrometry, and single crystal X-ray diffraction were used to characterize the products of each reaction. The oxygen atoms in the final products come from the facile cleavage of either CO2 or OCS, depending on the reacting carbon dichalogenide.
C1 [Stewart, Constantine A.; Kemp, Richard A.] Sandia Natl Labs, Adv Mat Lab, Albuquerque, NM 87106 USA.
   [Dickie, Diane A.; Parkes, Marie V.; Saria, Josephat A.; Kemp, Richard A.] Univ New Mexico, Dept Chem & Chem Biol, Albuquerque, NM 87131 USA.
RP Kemp, RA (reprint author), Sandia Natl Labs, Adv Mat Lab, Albuquerque, NM 87106 USA.
EM rakemp@unm.edu
RI Dickie, Diane/B-1647-2010
OI Dickie, Diane/0000-0003-0939-3309
FU NSF [CHE09-11110, CHE-0443580]; Sandia National Laboratories [105932,
   113486, 149938]; Natural Sciences and Engineering Research Council of
   Canada; United States Department of Energy [DE-AC04-94AL85000]
FX We thank Dr. Lev Zahkarov (University of Oregon) for help in modeling
   the disorder in 5. Funding for this research was provided by NSF
   (CHE09-11110), the Sandia National Laboratories LDRD program (105932,
   113486, and 149938), and the Natural Sciences and Engineering Research
   Council of Canada (postdoctoral fellowship to Dr. D. Dickie). The Bruker
   X8 X-ray diffractometer was purchased via an NSF CRIF:MU award to the
   University of New Mexico (CHE-0443580). Sandia is a multiprogram
   laboratory operated by Sandia Corporation, a Lockheed Martin Company,
   for the United States Department of Energy under Contract No.
   DE-AC04-94AL85000.
NR 46
TC 21
Z9 21
U1 0
U2 13
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 0020-1669
J9 INORG CHEM
JI Inorg. Chem.
PD DEC 6
PY 2010
VL 49
IS 23
BP 11133
EP 11141
DI 10.1021/ic101709q
PG 9
WC Chemistry, Inorganic & Nuclear
SC Chemistry
GA 684AG
UT WOS:000284518800049
PM 21062034
ER

PT J
AU Nam, SH
   Ulin-Avila, E
   Bartal, G
   Zhang, XA
AF Nam, Sung Hyun
   Ulin-Avila, Erick
   Bartal, Guy
   Zhang, Xiang
TI General properties of surface modes in binary metal-dielectric
   metamaterials
SO OPTICS EXPRESS
LA English
DT Article
ID WAVES
AB We present general properties of surface modes in binary metal-dielectric metamaterials. We show mechanism for surface mode formation and analyze their existence conditions for semi-infinite metamaterials in the frame of couple mode theory. (C) 2010 Optical Society of America
C1 [Nam, Sung Hyun; Ulin-Avila, Erick; Bartal, Guy; Zhang, Xiang] Univ Calif Berkeley, NSF Nanoscale Sci & Engn Ctr NSEC, Berkeley, CA 94720 USA.
   [Zhang, Xiang] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
RP Nam, SH (reprint author), Univ Calif Berkeley, NSF Nanoscale Sci & Engn Ctr NSEC, 3112 Etcheverry Hall, Berkeley, CA 94720 USA.
EM xiang@berkeley.edu
RI Zhang, Xiang/F-6905-2011; ulin-avila, erick/M-3278-2014
FU U.S. Army Research Office (ARO) MURI [50432 PH-MUR]
FX This work has been supported by U.S. Army Research Office (ARO) MURI
   program 50432 PH-MUR.
NR 19
TC 6
Z9 6
U1 0
U2 7
PU OPTICAL SOC AMER
PI WASHINGTON
PA 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA
SN 1094-4087
J9 OPT EXPRESS
JI Opt. Express
PD DEC 6
PY 2010
VL 18
IS 25
BP 25627
EP 25632
DI 10.1364/OE.18.025627
PG 6
WC Optics
SC Optics
GA 700NE
UT WOS:000285749500016
PM 21164908
ER

PT J
AU Zhao, RK
   Tassin, P
   Koschny, T
   Soukoulis, CM
AF Zhao, Rongkuo
   Tassin, Philippe
   Koschny, Thomas
   Soukoulis, Costas M.
TI Optical forces in nanowire pairs and metamaterials
SO OPTICS EXPRESS
LA English
DT Article
ID SPLIT-RING RESONATORS; ELECTROMAGNETICALLY INDUCED TRANSPARENCY;
   NEGATIVE INDEX; ATOMS; RESONANCES; REFRACTION; PARTICLES; NANORODS
AB We study the optical force arising when isolated gold nanowire pairs and metamaterials with a gold nanowire pair in the unit cell are illuminated with laser radiation. Firstly, we show that isolated nanowire pairs are subject to much stronger optical forces than nanospheres due to their stronger electric and magnetic dipole resonances. We also investigate the properties of the optical force as a function of the length of the nanowires and of the distance between the nanowires. Secondly, we study the optical force in a metamaterial that consists of a periodic array of nanowire pairs. We show that the ratio of the size of the unit cell to the length of the nanowires determines whether the electric dipole resonance leads to an attractive or a repulsive force, and we present the underlying physical mechanism for this effect. (C) 2010 Optical Society of America
C1 [Zhao, Rongkuo; Tassin, Philippe; Koschny, Thomas; Soukoulis, Costas M.] Iowa State Univ, Ames Lab, US DOE, Ames, IA 50011 USA.
   [Zhao, Rongkuo; Tassin, Philippe; Koschny, Thomas; Soukoulis, Costas M.] Iowa State Univ, Dept Phys & Astron, Ames, IA 50011 USA.
   [Zhao, Rongkuo] Beijing Normal Univ, Dept Phys, Appl Opt Beijing Area, Major Lab, Beijing 100875, Peoples R China.
   [Tassin, Philippe] Vrije Univ Brussel, Dept Appl Phys & Photon, B-1050 Brussels, Belgium.
   [Koschny, Thomas; Soukoulis, Costas M.] Univ Crete, Inst Elect Struct & Laser, FORTH, Iraklion 71110, Crete, Greece.
   [Koschny, Thomas; Soukoulis, Costas M.] Univ Crete, Dept Mat Sci & Technol, Iraklion 71110, Crete, Greece.
RP Zhao, RK (reprint author), Iowa State Univ, Ames Lab, US DOE, Ames, IA 50011 USA.
EM soukoulis@ameslab.gov
RI Tassin, Philippe/B-7152-2008; Zhao, Rongkuo/B-5731-2008; Soukoulis,
   Costas/A-5295-2008
FU AFOSR under MURI [FA9550-06-1-0337]; Department of Energy (Basic Energy
   Sciences) [DE-AC02-07CH11358]; BelSPO [IAP6/10]; China Scholarship
   Council (CSC); Belgian American Educational Foundation
FX This work was supported by the AFOSR under MURI Grant No.
   FA9550-06-1-0337. Work at Ames Laboratory was partially supported by the
   Department of Energy (Basic Energy Sciences) under Contract No.
   DE-AC02-07CH11358. Work at VUB was supported by BelSPO (Grant No.
   IAP6/10). R. Z. acknowledges the China Scholarship Council (CSC) for
   financial support. P. T. is supported by a Fellowship of the Belgian
   American Educational Foundation.
NR 34
TC 43
Z9 44
U1 2
U2 30
PU OPTICAL SOC AMER
PI WASHINGTON
PA 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA
SN 1094-4087
J9 OPT EXPRESS
JI Opt. Express
PD DEC 6
PY 2010
VL 18
IS 25
BP 25665
EP 25676
DI 10.1364/OE.18.025665
PG 12
WC Optics
SC Optics
GA 700NE
UT WOS:000285749500021
PM 21164913
ER

PT J
AU Kinoshita, M
   Steiner, M
   Engel, M
   Small, JP
   Green, AA
   Hersam, MC
   Krupke, R
   Mendez, EE
   Avouris, P
AF Kinoshita, Megumi
   Steiner, Mathias
   Engel, Michael
   Small, Joshua P.
   Green, Alexander A.
   Hersam, Mark C.
   Krupke, Ralph
   Mendez, Emilio E.
   Avouris, Phaedon
TI The polarized carbon nanotube thin film LED
SO OPTICS EXPRESS
LA English
DT Article
ID ELECTROLUMINESCENCE; TRANSISTORS; EMISSION
AB We demonstrate a light emitting p-i-n diode made of a highly aligned film of separated (99%) semiconducting carbon nanotubes, self-assembled from solution. By using a split gate technique, we create p-and n-doped regions in the nanotube film that are separated by a micron-wide gap. We inject p- and n-type charge carriers into the device channel from opposite contacts and investigate the radiative recombination using optical micro-spectroscopy. We find that the threshold-less light generation efficiency in the intrinsic carbon nanotube film segment can be enhanced by increasing the potential drop across the junction, demonstrating the LED-principle in a carbon nanotube film for the first time. The device emits infrared light that is polarized along the long axes of the carbon nanotubes that form the aligned film. (c) 2010 Optical Society of America
C1 [Kinoshita, Megumi; Steiner, Mathias; Small, Joshua P.; Avouris, Phaedon] IBM Corp, Thomas J Watson Res Ctr, Yorktown Hts, NY 10598 USA.
   [Kinoshita, Megumi; Mendez, Emilio E.] SUNY Stony Brook, Dept Phys & Astron, Stony Brook, NY 11794 USA.
   [Engel, Michael; Krupke, Ralph] Karlsruhe Inst Technol, Inst Nanotechnol, D-76021 Karlsruhe, Germany.
   [Engel, Michael; Krupke, Ralph] DFG Ctr Funct Nanostruct, D-76028 Karlsruhe, Germany.
   [Green, Alexander A.; Hersam, Mark C.] Northwestern Univ, Dept Mat Sci & Engn, Evanston, IL 60208 USA.
   [Green, Alexander A.; Hersam, Mark C.] Northwestern Univ, Dept Chem, Evanston, IL 60208 USA.
   [Mendez, Emilio E.] Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USA.
RP Kinoshita, M (reprint author), IBM Corp, Thomas J Watson Res Ctr, Yorktown Hts, NY 10598 USA.
EM msteine@us.ibm.com
RI Hersam, Mark/B-6739-2009; 
OI Green, Alexander/0000-0003-2058-1204
FU NSF (DMR) [0705131]; National Science Foundation [DMR-0520513,
   EEC-0647560, DMR-1006391]; Nanoelectronics Research Initiative
FX We thank Damon Farmer (IBM Research, Yorktown Heights, NY) for preparing
   gate dielectric thin films by atomic layer deposition. We acknowledge
   expert technical support by Bruce A. Ek (IBM Research, Yorktown Heights,
   NY). M. K. acknowledges support from NSF (DMR # 0705131). A. A. G. and
   M. C. H. acknowledge support from the National Science Foundation
   (DMR-0520513, EEC-0647560, and DMR-1006391) and the Nanoelectronics
   Research Initiative.
NR 20
TC 30
Z9 30
U1 4
U2 28
PU OPTICAL SOC AMER
PI WASHINGTON
PA 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA
SN 1094-4087
J9 OPT EXPRESS
JI Opt. Express
PD DEC 6
PY 2010
VL 18
IS 25
BP 25738
EP 25745
DI 10.1364/OE.18.025738
PG 8
WC Optics
SC Optics
GA 700NE
UT WOS:000285749500027
PM 21164919
ER

PT J
AU Mashiko, H
   Bell, MJ
   Beck, AR
   Abel, MJ
   Nagel, PM
   Steiner, CP
   Robinson, J
   Neumark, DM
   Leone, SR
AF Mashiko, Hiroki
   Bell, M. Justine
   Beck, Annelise R.
   Abel, Mark J.
   Nagel, Philip M.
   Steiner, Colby P.
   Robinson, Joseph
   Neumark, Daniel M.
   Leone, Stephen R.
TI Tunable frequency-controlled isolated attosecond pulses characterized by
   either 750 nm or 400 nm wavelength streak fields
SO OPTICS EXPRESS
LA English
DT Article
ID REAL-TIME OBSERVATION; GENERATION; SPECTROSCOPY
AB A compact and robust Mach-Zehnder type interferometer coupled with the double optical gating technique provides tunable isolated attosecond pulses and streak field detection with fields centered at either 750 nm or 400 nm. Isolated attosecond pulses produced at 45 eV (with measured pulse duration of 114 +/- 4 as) and 20 eV (with measured pulse duration of 395 +/- 6 as) are temporally characterized with a 750 nm wavelength streak field. In addition, an isolated 118 +/- 10 as pulse at 45 eV is measured with a 400 nm wavelength streak field. The interferometer design used herein provides broad flexibility for attosecond streak experiments, allowing pump and probe pulses to be specified independently. This capability is important for studying selected electronic transitions in atoms and molecules. (c) 2010 Optical Society of America
C1 [Mashiko, Hiroki; Bell, M. Justine; Beck, Annelise R.; Abel, Mark J.; Nagel, Philip M.; Steiner, Colby P.; Neumark, Daniel M.; Leone, Stephen R.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Chem Sci, Ultrafast Xray Sci Lab, Berkeley, CA 94720 USA.
   [Mashiko, Hiroki; Bell, M. Justine; Beck, Annelise R.; Abel, Mark J.; Nagel, Philip M.; Steiner, Colby P.; Neumark, Daniel M.; Leone, Stephen R.] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
   [Mashiko, Hiroki; Bell, M. Justine; Beck, Annelise R.; Abel, Mark J.; Nagel, Philip M.; Steiner, Colby P.; Neumark, Daniel M.; Leone, Stephen R.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Robinson, Joseph] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
RP Mashiko, H (reprint author), Univ Calif Berkeley, Lawrence Berkeley Lab, Div Chem Sci, Ultrafast Xray Sci Lab, Berkeley, CA 94720 USA.
EM hmashiko@lbl.gov
RI Neumark, Daniel/B-9551-2009
OI Neumark, Daniel/0000-0002-3762-9473
FU Office of Science, Office of Basic Energy Sciences, Chemical Sciences,
   Geosciences, and Biosciences Division of the U.S. Department of Energy
   [DE-AC02-05CH11231]; National Science Foundation; Berkeley Fellowship
   for Graduate Studies
FX This work was supported by the Director, Office of Science, Office of
   Basic Energy Sciences, Chemical Sciences, Geosciences, and Biosciences
   Division of the U.S. Department of Energy under Contract No.
   DE-AC02-05CH11231. M.J.B acknowledges support from a National Science
   Foundation Graduate Research Fellowship. A.R.B acknowledges support from
   the Berkeley Fellowship for Graduate Studies. The authors thank W.
   Boutu, Z. Loh, and T. Pfeifer for helpful discussions. The authors thank
   the LBNL Center for X-ray Optics (CXRO) for custom made multilayer
   mirrors.
NR 29
TC 19
Z9 19
U1 2
U2 20
PU OPTICAL SOC AMER
PI WASHINGTON
PA 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA
SN 1094-4087
J9 OPT EXPRESS
JI Opt. Express
PD DEC 6
PY 2010
VL 18
IS 25
BP 25887
EP 25895
DI 10.1364/OE.18.025887
PG 9
WC Optics
SC Optics
GA 700NE
UT WOS:000285749500042
PM 21164934
ER

PT J
AU Cendejas, RA
   Phillips, MC
   Myers, TL
   Taubman, MS
AF Cendejas, Richard A.
   Phillips, Mark C.
   Myers, Tanya L.
   Taubman, Matthew S.
TI Single-mode, narrow-linewidth external cavity quantum cascade laser
   through optical feedback from a partial-reflector
SO OPTICS EXPRESS
LA English
DT Article
ID CONTINUOUS-WAVE
AB An external-cavity (EC) quantum cascade (QC) laser using optical feedback from a partial-reflector is reported. With this configuration, the otherwise multi-mode emission of a Fabry-Perot QC laser was made single-mode with optical output powers exceeding 40 mW. A mode-hop free tuning range of 2.46 cm. 1 was achieved by synchronously tuning the EC length and QC laser current. The linewidth of the partial-reflector EC-QC laser was measured for integration times from 100 mu s to 4 seconds, and compared to a distributed feedback QC laser. Linewidths as small as 480 kHz were recorded for the EC-QC laser. (C) 2010 Optical Society of America
C1 [Cendejas, Richard A.] Princeton Univ, Dept Elect Engn, Princeton, NJ 08540 USA.
   [Phillips, Mark C.; Myers, Tanya L.; Taubman, Matthew S.] Pacific NW Natl Lab, Richland, WA 99354 USA.
RP Cendejas, RA (reprint author), Princeton Univ, Dept Elect Engn, Princeton, NJ 08540 USA.
EM rcendeja@princeton.edu
FU MIRTHE (NSRF-ERC) [EEC-0540832]; U.S. Department of Energy (DOE) by the
   Battelle Memorial Institute [DE-AC05-76RL01830]
FX The authors would like to thank Fred J. Towner of Maxion Technologies
   Inc. for wafer growth, Claire Gmachl for discussions, and MIRTHE
   (NSRF-ERC Grant No. EEC-0540832). The Pacific Northwest National
   Laboratory is operated for the U.S. Department of Energy (DOE) by the
   Battelle Memorial Institute under Contract No. DE-AC05-76RL01830.
NR 19
TC 7
Z9 7
U1 1
U2 19
PU OPTICAL SOC AMER
PI WASHINGTON
PA 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA
SN 1094-4087
J9 OPT EXPRESS
JI Opt. Express
PD DEC 6
PY 2010
VL 18
IS 25
BP 26037
EP 26045
DI 10.1364/OE.18.026037
PG 9
WC Optics
SC Optics
GA 700NE
UT WOS:000285749500059
PM 21164951
ER

PT J
AU Huang, XJ
   Nelson, J
   Steinbrener, J
   Kirz, J
   Turner, JJ
   Jacobsen, C
AF Huang, Xiaojing
   Nelson, Johanna
   Steinbrener, Jan
   Kirz, Janos
   Turner, Joshua J.
   Jacobsen, Chris
TI Incorrect support and missing center tolerances of phasing algorithms
SO OPTICS EXPRESS
LA English
DT Article
ID RETRIEVAL; MICROSCOPY; REFLECTION; NOISE
AB In x-ray diffraction microscopy, iterative algorithms retrieve reciprocal space phase information, and a real space image, from an object's coherent diffraction intensities through the use of a priori information such as a finite support constraint. In many experiments, the object's shape or support is not well known, and the diffraction pattern is incompletely measured. We describe here computer simulations to look at the effects of both of these possible errors when using several common reconstruction algorithms. Overly tight object supports prevent successful convergence; however, we show that this can often be recognized through pathological behavior of the phase retrieval transfer function. Dynamic range limitations often make it difficult to record the central speckles of the diffraction pattern. We show that this leads to increasing artifacts in the image when the number of missing central speckles exceeds about 10, and that the removal of unconstrained modes from the reconstructed image is helpful only when the number of missing central speckles is less than about 50. This simulation study helps in judging the reconstructability of experimentally recorded coherent diffraction patterns. (C) 2010 Optical Society of America
C1 [Huang, Xiaojing; Nelson, Johanna; Steinbrener, Jan; Turner, Joshua J.; Jacobsen, Chris] SUNY Stony Brook, Dept Phys & Astron, Stony Brook, NY 11794 USA.
   [Kirz, Janos] Lawrence Berkeley Natl Lab, Adv Light Source, Berkeley, CA 94702 USA.
   [Jacobsen, Chris] Northwestern Univ, Dept Phys & Astron, Evanston, IL 60208 USA.
   [Jacobsen, Chris] Argonne Natl Lab, Adv Photon Source, Argonne, IL 60439 USA.
RP Huang, XJ (reprint author), UCL, London Ctr Nanotechnol, London WC1H 0AH, England.
EM xiaojing.huang@ucl.ac.uk
RI Huang, Xiaojing/K-3075-2012; Jacobsen, Chris/E-2827-2015; Nelson Weker,
   Johanna/J-4159-2015
OI Huang, Xiaojing/0000-0001-6034-5893; Jacobsen,
   Chris/0000-0001-8562-0353; Nelson Weker, Johanna/0000-0001-6856-3203
FU Division of Materials Sciences and Engineering, Office of Basic Energy
   Sciences, at the Department of Energy [FG02-07ER46128]; National
   Institute for General Medical Services at the National Institutes for
   Health [5R21EB6134]
FX We wish to thank the Division of Materials Sciences and Engineering,
   Office of Basic Energy Sciences, at the Department of Energy for support
   of x-ray diffraction microscopy methods and instrumentation under
   contract DE-FG02-07ER46128. We also wish to thank the National Institute
   for General Medical Services at the National Institutes for Health for
   support of the application of this method to biological imaging under
   contract 5R21EB6134. Finally, we thank David Shapiro, Stefano Marchesini
   and David Sayre for many helpful discussions.
NR 22
TC 9
Z9 9
U1 1
U2 4
PU OPTICAL SOC AMER
PI WASHINGTON
PA 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA
SN 1094-4087
J9 OPT EXPRESS
JI Opt. Express
PD DEC 6
PY 2010
VL 18
IS 25
BP 26441
EP 26449
DI 10.1364/OE.18.026441
PG 9
WC Optics
SC Optics
GA 700NE
UT WOS:000285749500102
PM 21164994
ER

PT J
AU Baxter, EJ
   Dodelson, S
   Koushiappas, SM
   Strigari, LE
AF Baxter, Eric J.
   Dodelson, Scott
   Koushiappas, Savvas M.
   Strigari, Louis E.
TI Constraining dark matter in galactic substructure
SO PHYSICAL REVIEW D
LA English
DT Article
AB Detecting the dark matter annihilation signal from Galactic substructure, or subhalos, is an important challenge for high-energy gamma-ray experiments. In this paper we discuss detection prospects by combining two different aspects of the gamma-ray signal: the angular distribution and the photon counts probability distribution function (PDF). The true PDF from subhalos has been shown recently (by Lee et al.) to deviate from Poisson; we extend this analysis and derive the signal PDF from a detailed Delta CDM-based model for the properties of subhalos. We combine our PDF with a model for Galactic and extra-Galactic diffuse gamma-ray emission to obtain an estimator and projected error on dark matter particle properties (mass and annihilation cross section) using the Fermi gamma-ray space telescope. We compare the estimator obtained from the true PDF to that obtained from the simpler Poisson analysis. We find that, although both estimators are unbiased in the presence of backgrounds, the error on dark matter properties derived from the true PDF is similar to 50% smaller than when utilizing the Poisson-based analysis.
C1 [Baxter, Eric J.; Dodelson, Scott] Univ Chicago, Dept Astron & Astrophys, Chicago, IL 60637 USA.
   [Dodelson, Scott] Fermilab Natl Accelerator Lab, Ctr Particle Astrophys, Batavia, IL 60510 USA.
   [Dodelson, Scott] Kavli Inst Cosmol Phys, Chicago, IL 60637 USA.
   [Koushiappas, Savvas M.] Brown Univ, Dept Phys, Providence, RI 02912 USA.
   [Strigari, Louis E.] Stanford Univ, Kavli Inst Particle Astrophys & Cosmol, Stanford, CA 94305 USA.
RP Baxter, EJ (reprint author), Univ Chicago, Dept Astron & Astrophys, 5640 S Ellis Ave, Chicago, IL 60637 USA.
OI Strigari, Louis/0000-0001-5672-6079
FU National Science Foundation Grant [AST-0908072]; US Department of Energy
   [DE-FG0-295ER40896]; NASA [HF-51248.01-A, NAS 5-26555]
FX This work has been supported by the National Science Foundation Grant
   No. AST-0908072 and by the US Department of Energy, including Grant No.
   DE-FG0-295ER40896. Support for L. S. for this work was provided by NASA
   through Grant No. HF-51248.01-A given by the Space Telescope Science
   Institute, which is operated by the Association of Universities for
   Research in Astronomy, Inc., for NASA, under Contract No. NAS 5-26555.
NR 51
TC 21
Z9 21
U1 0
U2 1
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1550-7998
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 6
PY 2010
VL 82
IS 12
AR 123511
DI 10.1103/PhysRevD.82.123511
PG 10
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA V25JK
UT WOS:000208474100003
ER

PT J
AU Dutta, B
   Kamon, T
   Krislock, A
   Kolev, N
   Oh, Y
AF Dutta, Bhaskar
   Kamon, Teruki
   Krislock, Abram
   Kolev, Nikolay
   Oh, Youngdo
TI Determination of nonuniversal supergravity models at the Large Hadron
   Collider
SO PHYSICAL REVIEW D
LA English
DT Article
ID NEUTRALINO DARK-MATTER; MSSM PARAMETER SPACE; MINIMAL SUPERGRAVITY; STAU
   COANNIHILATION; RELIC DENSITY; SUPERSYMMETRY BREAKING; GRAND
   UNIFICATION; HIGGS MASSES; LHC; PARTICLE
AB We examine a well-motivated nonuniversal supergravity model where the Higgs boson masses are not unified with the other scalars at the grand unified scale at the LHC. The dark matter content can easily be satisfied in this model by having a larger Higgsino component in the lightest neutralino. Typical final states in such a scenario at the LHC involve W bosons. We develop a bi-event subtraction technique to reduce a huge combinatorial background to identify W -> jj decays. This is also a key technique to reconstruct supersymmetric particle masses in order to determine the model parameters. With the model parameters, we find that the dark matter content of the Universe can be determined in agreement with existing experimental results.
C1 [Dutta, Bhaskar; Kamon, Teruki; Krislock, Abram] Texas A&M Univ, Dept Phys, College Stn, TX 77843 USA.
   [Kamon, Teruki] Fermilab Natl Accelerator Lab, Batavia, IL 60510 USA.
   [Kamon, Teruki; Oh, Youngdo] Kyungpook Natl Univ, Dept Phys, Taegu 702701, South Korea.
   [Kolev, Nikolay] Univ Regina, Dept Phys, Regina, SK S4S 0A2, Canada.
RP Dutta, B (reprint author), Texas A&M Univ, Dept Phys, College Stn, TX 77843 USA.
FU Ministry of Education, Science Technology [DE-FG02-95ER40917,
   R32-2008-000-20001-0]
FX This work is supported in part by the DOE under Grant No.
   DE-FG02-95ER40917 and by the World Class University (WCU) project
   through the National Research Foundation (NRF) of Korea funded by the
   Ministry of Education, Science & Technology under Grant No.
   R32-2008-000-20001-0. We would like to thank A. Gurrola and Y. Santoso
   for useful discussions.
NR 82
TC 11
Z9 11
U1 0
U2 4
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2470-0010
EI 2470-0029
J9 PHYS REV D
JI Phys. Rev. D
PD DEC 6
PY 2010
VL 82
IS 11
AR 115009
DI 10.1103/PhysRevD.82.115009
PG 11
WC Astronomy & Astrophysics; Physics, Particles & Fields
SC Astronomy & Astrophysics; Physics
GA 711CZ
UT WOS:000286565900006
ER

PT J
AU Wolfle, P
   Dubi, Y
   Balatsky, AV
AF Woelfle, P.
   Dubi, Y.
   Balatsky, A. V.
TI Tunneling into Clean Heavy Fermion Compounds: Origin of the Fano Line
   Shape
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID QUANTUM PHASE-TRANSITIONS; KONDO-LATTICE; HIDDEN ORDER; METALS;
   ANTIFERROMAGNETISM; RESONANCE; ELECTRON; IMPURITY; URU2SI2; STATES
AB Recently observed tunneling spectra on clean heavy-fermion compounds show a lattice periodic Fano line shape similar to what is observed in the case of tunneling to a Kondo ion adsorbed at the surface. We show that the translation symmetry of a clean surface in the case of weakly correlated metals leads to a tunneling spectrum which shows a hybridization gap but does not have a Fano line shape. By contrast, in a strongly correlated heavy-fermion metal the heavy quasiparticle states will be broadened by interaction effects. The hybridization gap is completely filled in this way, and an ideal Fano line shape of width similar to 2T(K) results. In addition, we discuss the possible influence of the tunneling tip on the surface, in (i) leading to additional broadening of the Fano line and (ii) enhancing the hybridization locally, hence adding to the impurity type behavior. The latter effects depend on the tip-surface distance.
C1 [Woelfle, P.] Karlsruhe Inst Technol, Inst Theory Condensed Matter, D-76128 Karlsruhe, Germany.
   [Woelfle, P.] Karlsruhe Inst Technol, Ctr Funct Nanostruct, D-76128 Karlsruhe, Germany.
   [Dubi, Y.; Balatsky, A. V.] Los Alamos Natl Lab, Div Theoret, Los Alamos, NM 87545 USA.
   [Balatsky, A. V.] Los Alamos Natl Lab, Ctr Integrated Nanotechnol, Los Alamos, NM 87545 USA.
RP Wolfle, P (reprint author), Karlsruhe Inst Technol, Inst Theory Condensed Matter, D-76128 Karlsruhe, Germany.
RI Dubi, Yonatan/G-5304-2013; Woelfle, Peter/N-8046-2013
FU Theory Division of Los Alamos Laboratory; Aspen Center for Physics; DFG
   research unit; UCOP; DOE BES
FX We acknowledge stimulating discussions with Seamus Davis and J.
   Fransson. P. W. acknowledges partial support by the Theory Division of
   Los Alamos Laboratory, the Aspen Center for Physics, and the DFG
   research unit "Quantum phase transitions." A. V. B. and Y.D. acknowledge
   support from UCOP and DOE BES.
NR 31
TC 30
Z9 30
U1 2
U2 10
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 6
PY 2010
VL 105
IS 24
AR 246401
DI 10.1103/PhysRevLett.105.246401
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713KS
UT WOS:000286737500003
PM 21231537
ER

PT J
AU Kuang, P
   Lee, JH
   Kim, CH
   Ho, KM
   Constant, K
AF Kuang, Ping
   Lee, Jae-Hwang
   Kim, Chang-Hwang
   Ho, Kai-Ming
   Constant, Kristen
TI Improved Surface Wettability of Polyurethane Films by Ultraviolet Ozone
   Treatment
SO JOURNAL OF APPLIED POLYMER SCIENCE
LA English
DT Article
DE UVO treatment; polyurethanes; surface wettability; atomic force
   microscopy; X-ray photoelectron spectroscopy
ID POLYMERS
AB The wettability of polyurethane (PU) was altered using ultraviolet ozone (UVO) treatment. The effect of UVO treatment on PU surface chemistry was investigated with various experiments. The direct measurement of sessile drops was employed to quantify the static contact angle of different wetting liquids on homogeneous PU films with various UVO treatment times. The contact angle of DI water droplets was decreased to 17.2 degrees from 70.04 degrees after 5 min UVO treatment. The surface free energy of PU films was 51.46 mN m(-1) before treatment and was increased to 71.5 mN m(-1) after being fully treated. X-ray photoelectron spectroscopy (XPS) analysis shows a significant amount of polar functional species (C-0 and C=0 bonding) were formed on the PU surface by UVO treatment. atomic force microscopy (AFM) characterization shows the PU surface morphology was different before and after UVO treatment. The effect of water washing on UVO treated surface was also investigated. An aging effect study indicates the UVO modification can sustain the improved wettability with limited hydrophobic recovery, where the DI water contact angle remains constant at around 22 after the UVO treatment. (C) 2010 Wiley Periodicals, Inc. J Appl Polym Sci 118: 3024-3033, 2010
C1 [Kuang, Ping; Constant, Kristen] Iowa State Univ Sci & Technol, Dept Mat Sci & Engn, Ames, IA 50011 USA.
   [Lee, Jae-Hwang; Kim, Chang-Hwang; Ho, Kai-Ming] Iowa State Univ Sci & Technol, Dept Phys & Astron, Ames, IA 50011 USA.
   [Ho, Kai-Ming; Constant, Kristen] US DOE, Ames Lab, Ames, IA 50011 USA.
RP Constant, K (reprint author), Iowa State Univ Sci & Technol, Dept Mat Sci & Engn, Ames, IA 50011 USA.
EM constant@iastate.edu
RI Kuang, Ping /G-4103-2012; Constant, Kristen/C-3673-2014; 
OI Constant, Kristen/0000-0001-7138-9365; , Ping/0000-0002-5896-3032
FU Ames Laboratory; U.S. Department of Energy Basic Energy Sciences
   [DE-AC02-07CH11358]; Director for Energy Research, Office of Basic
   Energy Sciences
FX Contract grant sponsor: The Ames Laboratory, supported by the U.S.
   Department of Energy Basic Energy Sciences; contract grant number:
   DE-AC02-07CH11358.; This work is supported by the Director for Energy
   Research, Office of Basic Energy Sciences. The Ames Laboratory is
   operated for the U.S. Department of Energy by Iowa State University
   under Contract No. DE-AC02-07CH11358.
NR 17
TC 5
Z9 5
U1 3
U2 12
PU WILEY-BLACKWELL
PI MALDEN
PA COMMERCE PLACE, 350 MAIN ST, MALDEN 02148, MA USA
SN 0021-8995
J9 J APPL POLYM SCI
JI J. Appl. Polym. Sci.
PD DEC 5
PY 2010
VL 118
IS 5
BP 3024
EP 3033
DI 10.1002/app.32712
PG 10
WC Polymer Science
SC Polymer Science
GA 662UZ
UT WOS:000282840900061
ER

PT J
AU Boyle, J
   Klein, SA
AF Boyle, James
   Klein, Stephen A.
TI Impact of horizontal resolution on climate model forecasts of tropical
   precipitation and diabatic heating for the TWP-ICE period
SO JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES
LA English
DT Article
ID COMMUNITY ATMOSPHERE MODEL; INTERNATIONAL CLOUD EXPERIMENT; MARITIME
   CONTINENT; MOMENTUM TRANSPORT; GLOBAL CLIMATE; VERSION 3; SENSITIVITY;
   CONVECTION; PARAMETERIZATION; SIMULATIONS
AB In order to study the impact of horizontal resolution on climate model simulations of tropical moist processes, short-term forecasts using the Community Atmospheric Model (version 4) at several resolutions are performed for a time period encompassing the Tropical Warm Pool-International Cloud Experiment (TWP-ICE). TWP-ICE occurred in the environment of Darwin, Australia in January and February 2006. The experimental period encompasses a number of atmospheric phenomena, such as an MJO passage, mesoscale convective systems, monsoon trough, and active and dry conditions. The CAM is run with four horizontal resolutions: 2 degrees, 1 degrees, 0.5 degrees, and 0.25 degrees latitude-longitude. Simulated profiles of diabatic heating and moistening at the TWP-ICE site show that the model parameterizations respond reasonably well for all resolutions to the sequence of varying conditions imposed by the analyses used to initialize the model. The spatial patterns of global model biases in time mean precipitation are largely unchanged over resolutions, and in some regions the 0.25 degrees model significantly overestimates the observed precipitation. However, there are substantive positive aspects of finer resolution. The diurnally forced circulations over the Maritime continent are more realistically captured by the 0.25 degrees simulation, which is able to better resolve the land-sea breeze. The intensity distribution of rainfall events is also improved at higher resolution through an increased frequency of very intense events and an increased frequency of little or no precipitation. Finally, the ratio of stratiform to convective precipitation systematically increases toward better agreement with observational estimates with increases in resolution.
C1 [Boyle, James; Klein, Stephen A.] Lawrence Livermore Natl Lab, LLNL PCMDI, Livermore, CA 94550 USA.
RP Boyle, J (reprint author), Lawrence Livermore Natl Lab, LLNL PCMDI, L-103,7000 E Ave, Livermore, CA 94550 USA.
EM boyle5@llnl.gov
RI Klein, Stephen/H-4337-2016
OI Klein, Stephen/0000-0002-5476-858X
FU U.S. Department of Energy, Office of Science, Office of Biological and
   Environmental Research, Environmental Sciences Division; U.S. Department
   of Energy by Lawrence Livermore National Laboratory [DE-AC52-07NA27344];
   U.S. Department of Energy, Cloud-Associated Parameterizations Testbed
   (CAPT)
FX We are grateful to the European Center for Medium-Range Weather
   Forecasts and National Center for Environmental Prediction for making
   their operational analyses available. Courtney Schumacher generously
   supplied latent heating estimates for the TWP-ICE. Timothy Hume provided
   high-resolution precipitation data for the months of January and
   February 2006. We thank Peter Caldwell and Shaocheng Xie for providing
   comments on the manuscript. The variational analyses and other
   observational data were obtained from the ARM program sponsored by the
   U.S. Department of Energy, Office of Science, Office of Biological and
   Environmental Research, Environmental Sciences Division. Work at LLNL
   was performed under the auspices of the U.S. Department of Energy by
   Lawrence Livermore National Laboratory under contract DE-AC52-07NA27344.
   The efforts of the authors were funded by the Regional and Global
   Climate Modeling and Atmospheric System Research programs of the U.S.
   Department of Energy as part of the Cloud-Associated Parameterizations
   Testbed (CAPT).
NR 40
TC 33
Z9 33
U1 2
U2 18
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-897X
EI 2169-8996
J9 J GEOPHYS RES-ATMOS
JI J. Geophys. Res.-Atmos.
PD DEC 4
PY 2010
VL 115
AR D23113
DI 10.1029/2010JD014262
PG 20
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA 690PU
UT WOS:000285017500006
ER

PT J
AU Borovsky, JE
   Denton, MH
AF Borovsky, Joseph E.
   Denton, Michael H.
TI On the heating of the outer radiation belt to produce high fluxes of
   relativistic electrons: Measured heating rates at geosynchronous orbit
   for high-speed stream-driven storms
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID SOLAR-WIND SPEED; COROTATING INTERACTION REGIONS; WAVE-PARTICLE
   INTERACTIONS; GEOMAGNETIC-ACTIVITY; INNER MAGNETOSPHERE; ENERGETIC
   ELECTRONS; PLASMA SHEET; MAGNETIC STORMS; SPACECRAFT ANOMALIES; EARTHS
   MAGNETOSPHERE
AB The heating rate of the outer electron radiation belt at geosynchronous orbit is determined for the interval from 36 to 72 h after the onset of high-speed stream-driven storms. Multisatellite measurements of the radiation belt temperature are used for 93 high-speed stream-driven storms. During the storms, the outer electron radiation belt temperature changes from similar to 120 keV to similar to 190 keV. The average heating rate of 32 keV d (1) is obtained. The heating rate during the storms is found to be positively correlated with the solar wind velocity and with the Kp index of geomagnetic activity and to be negatively correlated with the solar wind number density. When the solar wind velocity is held fixed, the correlation of the heating rate with Kp vanishes. Expressions for the change in the heating rate as function of the solar wind speed, the solar wind density, and the Kp index are fit to the data. The heating rate is uncorrelated with the amplitude of magnetic field fluctuations in the magnetosphere. Correlations between the heating rate and the level of velocity, density, and magnetic field fluctuations in the magnetosphere and in the solar wind are weaker than the correlations of the heating rate with the solar wind velocity and density. The heating rates correspond to a kinetic energy density change of 3.6 x 10(-11) erg cm(-3) d(-1) at geosynchronous orbit, to a specific entropy change of 4.1 x 10(6) eV cm(2) d(-1) at geosynchronous orbit, and to a total heating rate of the geosynchronous orbit region of 5.3 x 10(6) Watts.
C1 [Borovsky, Joseph E.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Denton, Michael H.] Univ Lancaster, Dept Phys, Lancaster LA1 4YW, England.
RP Borovsky, JE (reprint author), Los Alamos Natl Lab, Mail Stop D466, Los Alamos, NM 87545 USA.
OI Denton, Michael/0000-0002-1748-3710
FU NASA; Los Alamos National Laboratory; STFC [ST/G002401/1]
FX The authors wish to thank Tom Cayton for providing the
   density-temperature fits for the SOPA energetic particle data set,
   Howard Singer for help with the GOES magnetic field data, and Steve
   Morley for helpful conversations. J.E.B. wishes to thank the Department
   of Communication Systems at Lancaster University for their hospitality,
   and M. H. D. wishes to thank the Space Science and Applications Group
   and LANL for their hospitality. Work at Los Alamos was supported by the
   NASA Living with a Star TR&T Program and by the Los Alamos National
   Laboratory LDRD Program and work at Lancaster was partially supported by
   STFC grant ST/G002401/1.
NR 130
TC 20
Z9 20
U1 0
U2 1
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-9380
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 4
PY 2010
VL 115
AR A12206
DI 10.1029/2010JA015342
PG 34
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 690QT
UT WOS:000285020000004
ER

PT J
AU Gary, SP
   Liu, KJ
   Winske, D
   Denton, RE
AF Gary, S. Peter
   Liu, Kaijun
   Winske, Dan
   Denton, Richard E.
TI Ion Bernstein instability in the terrestrial magnetosphere: Linear
   dispersion theory
SO JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
LA English
DT Article
ID 1-2 MAGNETIC PULSATIONS; EQUATORIAL NOISE; MAGNETOSONIC WAVES; RING
   DISTRIBUTIONS; ULF WAVES; GENERATION; PLASMA; PROTON; FREQUENCY; CLUSTER
AB Linear kinetic dispersion theory for electromagnetic fluctuations in a homogeneous, magnetized, collisionless plasma is used to study the properties of an ion Bernstein mode instability driven by a proton velocity distribution f(p)(v) such that partial derivative f(p)(nu(perpendicular to))/partial derivative nu(perpendicular to) > 0, where perpendicular to denotes directions perpendicular to the background magnetic field B-o. Here f(p)(v) = f(1)(nu) - f(2)(nu), where f(1) and f(2) are Maxwellian velocity distributions with slightly different densities and temperatures; plasma parameters are taken from magnetospheric observations. Then the growth rate of this instability has relative maxima at w(r) similar or equal to n Omega(p), where n = 1, 2, 3, ... and Omega(p) is the proton cyclotron frequency; wave vector k at 0 < k(parallel to) << k(perpendicular to), where parallel to and perpendicular to denote the directions parallel and perpendicular to B-o; and wavelengths of the order of or smaller than the proton gyroradius. The maximum instability growth rate is a monotonically decreasing function of the electron-to-proton temperature ratio but has its largest value at an intermediate value of the proton beta (similar to 0.5 for the parameters considered here).
C1 [Gary, S. Peter; Liu, Kaijun; Winske, Dan] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Denton, Richard E.] Dartmouth Coll, Dept Phys, Hanover, NH 03755 USA.
RP Gary, SP (reprint author), Los Alamos Natl Lab, POB 1663, Los Alamos, NM 87545 USA.
EM pgary@lanl.gov; kaijun@lanl.gov; winske@lanl.gov;
   richard.e.denton@dartmouth.edu
RI Dong, Li/F-4931-2010
FU U.S. Department of Energy (DOE); Defense Threat Reduction agency [IACRO
   07-4323I]; NSF [ANT-0538379, ATM-0120950]
FX This work was performed under the auspices of the U.S. Department of
   Energy (DOE). It was supported primarily by the Defense Threat Reduction
   agency under the "Basic Research for Combating Weapons of Mass
   Destruction (WMD)" program, project IACRO 07-4323I. Work at Dartmouth
   College was supported by NSF grants ANT-0538379 and ATM-0120950 (Center
   for Integrated Space Weather Modeling, CISM, funded by the NSF Science
   and Technology Centers Program).
NR 31
TC 34
Z9 34
U1 1
U2 3
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0148-0227
J9 J GEOPHYS RES-SPACE
JI J. Geophys. Res-Space Phys.
PD DEC 4
PY 2010
VL 115
AR A12209
DI 10.1029/2010JA015965
PG 7
WC Astronomy & Astrophysics
SC Astronomy & Astrophysics
GA 690QT
UT WOS:000285020000018
ER

PT J
AU Arrowsmith, SJ
   Johnson, JB
   Drob, DP
   Hedlin, MAH
AF Arrowsmith, Stephen J.
   Johnson, Jeffrey B.
   Drob, Douglas P.
   Hedlin, Michael A. H.
TI THE SEISMOACOUSTIC WAVEFIELD: A NEW PARADIGM IN STUDYING GEOPHYSICAL
   PHENOMENA
SO REVIEWS OF GEOPHYSICS
LA English
DT Review
ID MOUNT-ST-HELENS; ATMOSPHERE RESEARCH SATELLITE; COUPLED AIR WAVES; ART.
   NO. 1003; ALASKAN EARTHQUAKE; STROMBOLI-VOLCANO; INFRASONIC
   OBSERVATIONS; ACOUSTIC MEASUREMENTS; INFORMATION-CONTENT; LOWER
   THERMOSPHERE
AB The field of seismoacoustics is emerging as an important discipline in its own right, owing to the value of colocated seismic and infrasound arrays that sample elastic energy propagating in both the solid Earth and the atmosphere. The fusion of seismic and infrasonic data provides unique constraints for studying a broad range of topics including the source physics of natural and man-made events, interaction of mechanical waves in Earth's crust and atmosphere, source location and characterization, and inversion of atmospheric and shallow subsurface properties. This review article traces the seismoacoustic wavefield from source to receiver. Beginning at the source, we review the latest insights into the physics of natural and anthropogenic sources that have arisen from the analysis of seismoacoustic data. Next, a comparative review of 3-D models of the atmosphere and solid Earth and the latest algorithms for modeling the propagation of mechanical waves through these media provides the framework for a discussion of the seismoacoustic path. The optimal measurement of seismic and acoustic waves, including a discussion of instrumentation, as well as of array configurations and regional networks, is then outlined. Finally, we focus on broad research applications where the analysis of seismoacoustic data is starting to yield important new results, such as in the field of nuclear explosion monitoring. This review is intended to provide a primer on the field of seismoacoustics for seismologists or acousticians, while also providing a more general review of what constraints seismoacoustics can uniquely provide for understanding geophysical phenomena.
C1 [Arrowsmith, Stephen J.] Los Alamos Natl Lab, Los Alamos, NM 87545 USA.
   [Drob, Douglas P.] USN, Res Lab, Div Space Sci, Washington, DC 20375 USA.
   [Hedlin, Michael A. H.] Univ Calif San Diego, Lab Atmospher Acoust, Inst Geophys & Planetary Phys, Scripps Inst Oceanog, La Jolla, CA 92093 USA.
   [Johnson, Jeffrey B.] New Mexico Inst Min & Technol, Dept Earth & Environm Sci, Socorro, NM 87801 USA.
RP Arrowsmith, SJ (reprint author), Los Alamos Natl Lab, POB 1663, Los Alamos, NM 87545 USA.
EM arrows@lanl.gov
RI Drob, Douglas/G-4061-2014
OI Drob, Douglas/0000-0002-2045-7740
NR 167
TC 24
Z9 24
U1 0
U2 14
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 8755-1209
EI 1944-9208
J9 REV GEOPHYS
JI Rev. Geophys.
PD DEC 4
PY 2010
VL 48
AR RG4003
DI 10.1029/2010RG000335
PG 23
WC Geochemistry & Geophysics
SC Geochemistry & Geophysics
GA 690PY
UT WOS:000285017900001
ER

PT J
AU Singleton, MJ
   Moran, JE
AF Singleton, Michael J.
   Moran, Jean E.
TI Dissolved noble gas and isotopic tracers reveal vulnerability of
   groundwater in a small, high-elevation catchment to predicted climate
   changes
SO WATER RESOURCES RESEARCH
LA English
DT Article
ID SHALLOW GROUNDWATER; EXCESS AIR; CARBON-DIOXIDE; CALIFORNIA; BASIN;
   RECHARGE; HELIUM; WATERS; CHLOROFLUOROCARBONS; MOUNTAINS
AB Noble gas concentrations and multiple isotopic tracers in groundwater and stream water at a small, high-elevation catchment of the Sierra Nevada Mountains constrain recharge conditions and subsurface residence times of different groundwater components. We identify three sources that contribute to groundwater flow: (1) seasonal groundwater recharge with short travel times, (2) water with elevated radiogenic He-4 that has experienced longer flow paths, and (3) upwelling of deep fluids that have "magmatic" helium and carbon isotope signatures. Results from our study illuminate two important aspects of the hydrological system that will have a direct impact on how this system responds to climate change: (1) recharge to the alluvial aquifer occurs primarily on the lower slopes of the catchment and is therefore sensitive to changes in snowline elevation and (2) deep groundwater in the western part of the aquifer is very young and provides very little buffering capacity. Although apparent groundwater ages indicate residence times range from less than a year to several decades, the water that recharges seasonally dominates the alluvial aquifer. Noble gas recharge temperatures are close to mean annual air temperature, and are 5 degrees-11 degrees higher than would be expected for direct influx of snowmelt. Excess air concentrations, indicating entrapment of air bubbles during recharge, are lower than would be expected for recharge through bedrock fractures. Instead, recharge likely occurs over vegetated areas on the lower slopes, as indicated by delta C-13-dissolved inorganic carbon values that are consistent with incorporation of CO2 from soil respiration.
C1 [Singleton, Michael J.] Lawrence Livermore Natl Lab, Phys & Life Sci Directorate, Div Chem Sci, Livermore, CA 94550 USA.
   [Moran, Jean E.] Calif State Univ E Bay, Dept Earth & Environm Sci, Hayward, CA 94542 USA.
RP Singleton, MJ (reprint author), Lawrence Livermore Natl Lab, Phys & Life Sci Directorate, Div Chem Sci, 7000 East Ave,L-231, Livermore, CA 94550 USA.
EM singleton20@llnl.gov; jean.moran@csueastbay.edu
FU LLNL Laboratory Directed Research and Development, Climate Initiative;
   California State University, East Bay; U.S. Department of Energy by
   Lawrence Livermore National Laboratory [DE-AC52-07NA27344]
FX The authors wish to gratefully acknowledge assistance with field
   sampling and sample analysis by Brad Esser, Sarah Roberts, Darren
   Hillegonds, Mike Sharp, and Carl Gustafson. Well access and logistical
   support were provided by Squaw Valley Public Services District, Friends
   of Squaw Creek, The Resort at Squaw Creek, Squaw Valley Mutual Water
   Company, and Derrik Williams (HydroMetrics LLC). Funding for this work
   was provided by LLNL Laboratory Directed Research and Development,
   Climate Initiative. Jean Moran received support from the Joan Sieber
   research award at California State University, East Bay. We are grateful
   to three WRR reviewers whose comments led to improvements in the text.
   This work was performed under the auspices of the U.S. Department of
   Energy by Lawrence Livermore National Laboratory under contract
   DE-AC52-07NA27344.
NR 54
TC 12
Z9 12
U1 1
U2 18
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0043-1397
EI 1944-7973
J9 WATER RESOUR RES
JI Water Resour. Res.
PD DEC 4
PY 2010
VL 46
AR W00F06
DI 10.1029/2009WR008718
PG 18
WC Environmental Sciences; Limnology; Water Resources
SC Environmental Sciences & Ecology; Marine & Freshwater Biology; Water
   Resources
GA 690PM
UT WOS:000285016700001
ER

PT J
AU Tebano, A
   Orsini, A
   Medaglia, PG
   Di Castro, D
   Balestrino, G
   Freelon, B
   Bostwick, A
   Chang, YJ
   Gaines, G
   Rotenberg, E
   Saini, NL
AF Tebano, A.
   Orsini, A.
   Medaglia, P. G.
   Di Castro, D.
   Balestrino, G.
   Freelon, B.
   Bostwick, A.
   Chang, Young Jun
   Gaines, G.
   Rotenberg, E.
   Saini, N. L.
TI Preferential occupation of interface bands in La2/3Sr1/3MnO3 films as
   seen via angle-resolved photoemission
SO PHYSICAL REVIEW B
LA English
DT Article
ID FERMI-SURFACE; OXIDES; MANGANITES; PSEUDOGAP; PHYSICS
AB We performed in situ angle-resolved photoemission spectroscopy measurements on La2/3Sr1/3MnO3 thin and ultrathin films deposited onto SrTiO3 substrates in order to determine their electronic band structure. We directly identified, in ultrathin films, an enhancement of the occupation of the out-of-plane Mn 3d e(g) (3z(2)-r(2)) band at the expense of the in-plane 3d e(g) (x(2)-y(2)) band. Such a disproportionate change in orbital occupation is interpreted as the origin of the strong depression of the magnetotransport properties at the interface between manganite films and substrates.
C1 [Tebano, A.; Orsini, A.; Medaglia, P. G.; Di Castro, D.; Balestrino, G.] Univ Roma Tor Vergata, CNR SPIN, I-00133 Rome, Italy.
   [Tebano, A.; Orsini, A.; Medaglia, P. G.; Di Castro, D.; Balestrino, G.] Univ Roma Tor Vergata, Dipartimento Ingn Meccan, I-00133 Rome, Italy.
   [Freelon, B.; Bostwick, A.; Chang, Young Jun; Gaines, G.; Rotenberg, E.] Univ Calif Berkeley, Lawrence Berkeley Lab, Adv Light Source, Berkeley, CA 94720 USA.
   [Saini, N. L.] Univ Roma La Sapienza, Dipartimento Fis, I-00185 Rome, Italy.
RP Tebano, A (reprint author), Univ Roma Tor Vergata, CNR SPIN, Via Politecn 1, I-00133 Rome, Italy.
RI Bostwick, Aaron/E-8549-2010; Saini, Naurang/J-7918-2013; Rotenberg,
   Eli/B-3700-2009; Chang, Young Jun/N-3440-2014; 
OI Saini, Naurang/0000-0003-3684-1517; Rotenberg, Eli/0000-0002-3979-8844;
   Chang, Young Jun/0000-0001-5538-0643; TEBANO,
   ANTONELLO/0000-0002-0229-671X; DI CASTRO, DANIELE/0000-0002-0878-6904
NR 27
TC 16
Z9 16
U1 1
U2 24
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2469-9950
EI 2469-9969
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 3
PY 2010
VL 82
IS 21
AR 214407
DI 10.1103/PhysRevB.82.214407
PG 5
WC Physics, Condensed Matter
SC Physics
GA 713LU
UT WOS:000286740300002
ER

PT J
AU Jung, WS
   Leem, CS
   Kim, C
   Park, SR
   Park, SY
   Kim, BJ
   Rotenberg, E
   Kim, C
AF Jung, W. S.
   Leem, C. S.
   Kim, Chul
   Park, S. R.
   Park, S. Y.
   Kim, B. J.
   Rotenberg, E.
   Kim, C.
TI Imaging the electron density in solids by using multi-Brillouin-zone
   angle resolved photoelectron spectroscopy
SO PHYSICAL REVIEW B
LA English
DT Article
ID ATOMIC-SCALE; PHOTOEMISSION; GRAPHITE
AB We propose a method to measure the electron density in the real space by using angle resolved photoelectron spectroscopy (ARPES). By expanding the wave function in terms of Wannier functions, multi-Brillouin-zone ARPES data contains information on the coefficients of the Wannier function. It is shown, in the case of noninteracting electrons, that ARPES spectral functions in different Brillouin zones are related to the absolute value of the Fourier components of the initial states. In addition, the phases, which are a pseudospin in the graphene, of these components are shown to be real numbers in the function of ARPES intensity. We simulate ARPES data from tight-binding model to obtain phase information. This information combined with a proper consideration of the electronic potential can be used to construct the real-space wave function.
C1 [Jung, W. S.; Leem, C. S.; Kim, Chul; Park, S. R.; Park, S. Y.; Kim, C.] Yonsei Univ, Inst Phys & Appl Phys, Seoul 120749, South Korea.
   [Kim, B. J.] Seoul Natl Univ, Sch Phys, Seoul, South Korea.
   [Kim, B. J.] Seoul Natl Univ, Ctr Strongly Correlated Mat Res, Seoul, South Korea.
   [Rotenberg, E.] Univ Calif Berkeley, Lawrence Berkeley Lab, Berkeley, CA 94720 USA.
RP Jung, WS (reprint author), Yonsei Univ, Inst Phys & Appl Phys, Seoul 120749, South Korea.
EM changyoung@yonsei.ac.kr; changyoung@yonsei.ac.kr
RI Rotenberg, Eli/B-3700-2009
OI Rotenberg, Eli/0000-0002-3979-8844
FU NRF [20090080739]; KICOS [K20602000008]; Office of BES of DOE
FX This work is supported by NRF (Contract No. 20090080739) and the KICOS
   under Grant No. K20602000008. ALS is operated by the Office of BES of
   DOE.
NR 20
TC 6
Z9 6
U1 1
U2 15
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 3
PY 2010
VL 82
IS 23
AR 235105
DI 10.1103/PhysRevB.82.235105
PG 5
WC Physics, Condensed Matter
SC Physics
GA 713VU
UT WOS:000286766300001
ER

PT J
AU Katz, RL
   Lopez, LM
   Annelli, JF
   Arthur, RR
   Carroll, D
   Chapman, LW
   Cole, K
   Gay, CG
   Lowe, DL
   Resnick, G
   Russell, KL
AF Katz, Rebecca L.
   Lopez, Leana M.
   Annelli, Joseph F.
   Arthur, Ray R.
   Carroll, Dennis
   Chapman, Leonard W.
   Cole, Kenneth
   Gay, Cyril G.
   Lowe, Daniel L.
   Resnick, Gary
   Russell, Kevin L.
TI US Government engagement in support of global disease surveillance
SO BMC PUBLIC HEALTH
LA English
DT Review
AB Global cooperation is essential for coordinated planning and response to public health emergencies, as well as for building sufficient capacity around the world to detect, assess and respond to health events. The United States is committed to, and actively engaged in, supporting disease surveillance capacity building around the world. We recognize that there are many agencies involved in this effort, which can become confusing to partner countries and other public health entities. This paper aims to describe the agencies and offices working directly on global disease surveillance capacity building in order to clarify the United States Government interagency efforts in this space.
C1 [Katz, Rebecca L.; Lopez, Leana M.; Lowe, Daniel L.] US Dept State, Washington, DC 20520 USA.
   [Katz, Rebecca L.] George Washington Univ, Sch Publ Hlth & Hlth Serv, Washington, DC USA.
   [Annelli, Joseph F.] USDA, Riverdale, MD USA.
   [Arthur, Ray R.] US Ctr Dis Control & Prevent, Atlanta, GA USA.
   [Carroll, Dennis] US Agcy Int Dev, Washington, DC 20523 USA.
   [Chapman, Leonard W.; Cole, Kenneth] US Dept Def, Arlington, VA USA.
   [Gay, Cyril G.] USDA, Beltsville, MD 20705 USA.
   [Resnick, Gary] Los Alamos Natl Lab, US DOE, Los Alamos, NM USA.
   [Russell, Kevin L.] US Dept Def, Silver Spring, MD USA.
RP Katz, RL (reprint author), US Dept State, Washington, DC 20520 USA.
EM KatzRL@state.gov
NR 1
TC 3
Z9 3
U1 0
U2 1
PU BIOMED CENTRAL LTD
PI LONDON
PA 236 GRAYS INN RD, FLOOR 6, LONDON WC1X 8HL, ENGLAND
SN 1471-2458
J9 BMC PUBLIC HEALTH
JI BMC Public Health
PD DEC 3
PY 2010
VL 10
SU 1
AR S13
DI 10.1186/1471-2458-10-S1-S13
PG 5
WC Public, Environmental & Occupational Health
SC Public, Environmental & Occupational Health
GA 759WN
UT WOS:000290279300013
PM 21143823
ER

PT J
AU Wang, HC
   Robinson, H
   Ke, HM
AF Wang, Huanchen
   Robinson, Howard
   Ke, Hengming
TI Conformation Changes, N-terminal Involvement, and cGMP Signal Relay in
   the Phosphodiesterase-5 GAF Domain
SO JOURNAL OF BIOLOGICAL CHEMISTRY
LA English
DT Article
ID ALLOSTERIC REGULATION; REGULATORY DOMAIN; CRYSTAL-STRUCTURE; A DOMAIN;
   BINDING; DIMERIZATION; LIGAND; 2A; PHOSPHORYLATION; DETERMINANTS
AB The activity of phosphodiesterase-5 (PDE5) is specific for cGMP and is regulated by cGMP binding to GAF-A in its regulatory domain. To better understand the regulatory mechanism, x-ray crystallographic and biochemical studies were performed on constructs of human PDE5A1 containing the N-terminal phosphorylation segment, GAF-A, and GAF-B. Superposition of this unliganded GAF-A with the previously reported NMR structure of cGMP-bound PDE5 revealed dramatic conformational differences and suggested that helix H4 and strand B3 probably serve as two lids to gate the cGMP-binding pocket in GAF-A. The structure also identified an interfacial region among GAF-A, GAF-B, and the N-terminal loop, which may serve as a relay of the cGMP signal from GAF-A to GAF-B. N-terminal loop 98-147 was physically associated with GAF-B domains of the dimer. Biochemical analyses showed an inhibitory effect of this loop on cGMP binding and its involvement in the cGMP-induced conformation changes.
C1 Univ N Carolina, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA.
   Univ N Carolina, Lineberger Comprehens Canc Ctr, Chapel Hill, NC 27599 USA.
   [Robinson, Howard] Brookhaven Natl Lab, Dept Biol, Upton, NY 11973 USA.
EM hke@med.unc.edu
FU National Institutes of Health [GM59791]; Office of Biological and
   Environmental Research; Office of Basic Energy Sciences, United States
   Department of Energy; National Center for Research Resources, National
   Institutes of Health
FX This work was supported, in whole or in part, by National Institutes of
   Health Grant GM59791 (to H.K.). This work was also supported by the
   Office of Biological and Environmental Research and the Office of Basic
   Energy Sciences, United States Department of Energy, and by the National
   Center for Research Resources, National Institutes of Health (to H.R.).
NR 35
TC 15
Z9 15
U1 0
U2 2
PU AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC
PI BETHESDA
PA 9650 ROCKVILLE PIKE, BETHESDA, MD 20814-3996 USA
SN 0021-9258
J9 J BIOL CHEM
JI J. Biol. Chem.
PD DEC 3
PY 2010
VL 285
IS 49
BP 38149
EP 38156
DI 10.1074/jbc.M110.141614
PG 8
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 685JS
UT WOS:000284625600022
PM 20861010
ER

PT J
AU Zaveri, RA
   Voss, PB
   Berkowitz, CM
   Fortner, E
   Zheng, J
   Zhang, RY
   Valente, RJ
   Tanner, RL
   Holcomb, D
   Hartley, TP
   Baran, L
AF Zaveri, Rahul A.
   Voss, Paul B.
   Berkowitz, Carl M.
   Fortner, Edward
   Zheng, Jun
   Zhang, Renyi
   Valente, Ralph J.
   Tanner, Roger L.
   Holcomb, Daniel
   Hartley, Thomas P.
   Baran, Leslie
TI Overnight atmospheric transport and chemical processing of
   photochemically aged Houston urban and petrochemical industrial plume
SO JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES
LA English
DT Article
ID PROTON-TRANSFER-REACTION; REACTION MASS-SPECTROMETRY; VOLATILE
   ORGANIC-COMPOUNDS; PEROXYCARBOXYLIC NITRIC ANHYDRIDES; GROUND-BASED
   MEASUREMENTS; POWER-PLANT PLUME; TEXAS AIR-QUALITY; OZONE FORMATION;
   TROPOSPHERIC OZONE; REACTIVE UPTAKE
AB Overnight atmospheric transport and chemical evolution of photochemically aged Houston urban and petrochemical industrial plume were investigated in July 2005. We report here on the 26 July episode in which the aged plume was tagged 1.5 h before sunset with a pair of free-floating controlled meteorological balloons, which guided quasi-Lagrangian aircraft sampling in the plume as it was advected 300 km to the north over 8 h. The aged plume around sunset was well mixed within a 1600 m residual layer, and was characterized by enhanced levels of aerosol, O-3, CO, olefins, acetaldehyde, total odd nitrogen compounds (NOy), and relatively small amounts (<1 ppbv) of NOx. The plume experienced appreciable shearing overnight due to the development of a low-altitude nocturnal jet between 300 and 500 m above mean sea level (MSL). However, the plume above 600 m MSL remained largely undiluted even after 8 h of transport due to lack of turbulent mixing above the jet. About 40-60% of the NOx present in the aged plume around sunset was found to be depleted over this 8 h period. A constrained plume modeling analysis of the quasi-Lagrangian aircraft observations suggested that by dawn this NOx was converted to nitric acid, organic nitrates, and peroxy acyl nitrates via reactions of NO3 radicals with enhanced levels of olefins and aldehydes in the plume. Sensitivity of NOx depletion to heterogeneous hydrolysis of N2O5 on aerosols was examined. These results have significant implications for the impacts of urban and industrial pollution on far downwind regions.
C1 [Zaveri, Rahul A.; Berkowitz, Carl M.] Pacific NW Natl Lab, Atmospher Sci & Global Change Div, Richland, WA 99352 USA.
   [Voss, Paul B.] Smith Coll, Picker Engn Program, Northampton, MA 01063 USA.
   [Fortner, Edward] Aerodyne Res Inc, Billerica, MA 01821 USA.
   [Zheng, Jun; Zhang, Renyi] Texas A&M Univ, Dept Atmospher Sci, College Stn, TX 77843 USA.
   [Valente, Ralph J.; Tanner, Roger L.] Tennessee Valley Author, Environm Technol Dept, Muscle Shoals, AL 35662 USA.
   [Holcomb, Daniel] Univ Calif Berkeley, Elect Engn & Comp Sci Dept, Berkeley, CA 94720 USA.
   [Hartley, Thomas P.] Univ Massachusetts, Dept Elect & Comp Engn, Amherst, MA 01003 USA.
   [Baran, Leslie] Univ Wyoming, Dept Atmospher Sci, Laramie, WY 82071 USA.
RP Zaveri, RA (reprint author), Pacific NW Natl Lab, Atmospher Sci & Global Change Div, MSIN K9-30,POB 999, Richland, WA 99352 USA.
EM rahul.zaveri@pnl.gov
RI Zhang, Renyi/A-2942-2011; Zheng, Jun/E-6772-2010; 
OI Zaveri, Rahul/0000-0001-9874-8807
FU DOE Atmospheric System Research (ASR) Program; U.S. Department of Energy
   [DE-AC06-76RLO 1830]
FX We thank the three anonymous reviewers for their detailed and thoughtful
   comments on the manuscript. We gratefully acknowledge the support of
   Texas Environmental Research Consortium (TERC), Houston Advanced
   Research Center (HARC), and Texas Commission on Environmental Quality
   (TCEQ) during 2005 for the SETTS field campaign and during 2008-2009 for
   the analysis of the data. Partial support was also provided by the DOE
   Atmospheric System Research (ASR) Program. We are also grateful to Brian
   Wing and the staff at Wing Aviation at the Lone Star Executive airport
   in Conroe, Texas, for hosting us. We thank Scott Seibold of Twin Otter
   International and the pilots, Bill Clark and Cathy Todoverto, for
   translating our scientific goals into safe and flawless missions.
   Finally, we are most grateful to Jay Olaguer and Alex Cuclis at HARC and
   Doug Boyer and Ken Rozacky at TCEQ for their support and guidance
   throughout this project. PNNL is operated for the U.S. Department of
   Energy by Battelle Memorial Institute under contract DE-AC06-76RLO 1830.
NR 54
TC 6
Z9 6
U1 4
U2 28
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 2169-897X
EI 2169-8996
J9 J GEOPHYS RES-ATMOS
JI J. Geophys. Res.-Atmos.
PD DEC 3
PY 2010
VL 115
AR D23303
DI 10.1029/2009JD013495
PG 19
WC Meteorology & Atmospheric Sciences
SC Meteorology & Atmospheric Sciences
GA 690PQ
UT WOS:000285017100002
ER

PT J
AU Negron-Juarez, R
   Baker, DB
   Zeng, HC
   Henkel, TK
   Chambers, JQ
AF Negron-Juarez, Robinson
   Baker, David B.
   Zeng, Hongcheng
   Henkel, Theryn K.
   Chambers, Jeffrey Q.
TI Assessing hurricane-induced tree mortality in U.S. Gulf Coast forest
   ecosystems
SO JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES
LA English
DT Article
ID MISSISSIPPI ALLUVIAL VALLEY; CARIBBEAN HURRICANES; TROPICAL CYCLONES;
   CLIMATE-CHANGE; DISTURBANCE; IMPACTS; GROWTH; CARBON; LOUISIANA; USA
AB Tropical cyclones disturb forest ecosystems and have the potential to alter forest structure and species composition as well as ecosystem functions including rates of nutrient cycling and biomass accumulation. Quantifying these forest disturbances is necessary to evaluate the extent and severity of damage for estimating biomass loss, developing regional carbon budgets, and making management decisions following hurricanes. In this study, we quantified forest disturbance (downed and dead and snapped trees) produced by hurricanes using a relationship between field-measured tree mortality and Landsat data that can be broadly applied to Gulf Coast forest ecosystems impacted by hurricanes. Field-measured tree mortality data was collected in Gulf Coast forests at 60 inventory plots established to monitor forest disturbance produced by hurricanes Katrina and Rita, which hit the region in 2005, and Hurricane Gustav, which hit the region in 2008. Large-scale disturbance estimates were obtained by regressing Landsat and Moderate Resolution Imaging Spectroradiometer (MODIS) data that in turn were associated with Forest Inventory and Analysis (FIA) data from the U. S. Forest Service. The use of the general relationship produced a biomass loss from dead trees of 43.9 +/- 8.4 Tg C for Hurricane Katrina and 37.9 +/- 6.4 Tg C for Hurricane Rita, which are near the upper limit of the expected values reported in our previous studies across a number of different forest types. Our results provide an important contribution for reliable assessments of large-scale disturbance produced by hurricanes in forest ecosystems. Improving our ability to accurately assess the impacts of hurricanes on forests and on terrestrial carbon cycles is particularly important given that climate projections suggest that hurricane intensity is likely to increase.
C1 [Negron-Juarez, Robinson; Baker, David B.; Zeng, Hongcheng; Henkel, Theryn K.; Chambers, Jeffrey Q.] Tulane Univ, New Orleans, LA 70118 USA.
   [Chambers, Jeffrey Q.] Lawrence Berkeley Natl Lab, Climate Sci Dept, Berkeley, CA 94720 USA.
RP Negron-Juarez, R (reprint author), Tulane Univ, 6823 St Charles Ave,Rm 400 Boggs Ctr, New Orleans, LA 70118 USA.
EM rjuarez@tulane.edu
RI Chambers, Jeffrey/J-9021-2014; Negron-Juarez, Robinson/I-6289-2016
OI Chambers, Jeffrey/0000-0003-3983-7847; 
FU National Institute for Climatic Change Research Coastal Center; DOE's
   Office of Biological and Environmental Research
FX We would like to thank comments from the Editor and two anonymous
   reviewers. This study was supported by a grant from the National
   Institute for Climatic Change Research Coastal Center, which is
   sponsored by DOE's Office of Biological and Environmental Research.
NR 50
TC 12
Z9 12
U1 0
U2 20
PU AMER GEOPHYSICAL UNION
PI WASHINGTON
PA 2000 FLORIDA AVE NW, WASHINGTON, DC 20009 USA
SN 0148-0227
J9 J GEOPHYS RES-BIOGEO
JI J. Geophys. Res.-Biogeosci.
PD DEC 3
PY 2010
VL 115
AR G04030
DI 10.1029/2009JG001221
PG 11
WC Environmental Sciences; Geosciences, Multidisciplinary
SC Environmental Sciences & Ecology; Geology
GA 690PZ
UT WOS:000285018000001
ER

PT J
AU Chakravarthy, S
   Sternberg, SH
   Kellenberger, CA
   Doudna, JA
AF Chakravarthy, Srinivas
   Sternberg, Samuel H.
   Kellenberger, Colleen A.
   Doudna, Jennifer A.
TI Substrate-Specific Kinetics of Dicer-Catalyzed RNA Processing
SO JOURNAL OF MOLECULAR BIOLOGY
LA English
DT Article
DE Dicer; siRNA; miRNA; TRBP; kinetics
ID RISC-LOADING COMPLEX; DISTINCT ROLES; TRBP; DROSOPHILA; PATHWAY; DSRNA;
   RDE-4; MIRNA; GENE; INTERFERENCE
AB The specialized ribonuclease Dicer plays a central role in eukaryotic gene expression by producing small regulatory RNAs microRNAs (miRNAs) and short interfering RNAs (siRNAs) from larger double-stranded RNA (dsRNA) substrates. Although Dicer will cleave both imperfectly base-paired hairpin structures (pre-miRNAs) and perfect duplexes (pre-siRNAs) in vitro, it has not been clear whether these are mechanistically equivalent substrates and how dsRNA binding proteins such as trans-activation response (TAR) RNA binding protein (TRBP) influence substrate selection and RNA processing efficiency. We show here that human Dicer is much faster at processing a pre-rniRNA substrate compared to a pre-siRNA substrate under both single and multiple turnover conditions. Maximal cleavage rates (V(max)) calculated by Michaelis-Menten analysis differed by more than 100-fold under multiple turnover conditions. TRBP was found to enhance dicing of both substrates to similar extents, and this stimulation required the two N-terminal dsRNA binding domains of TRBP. These results demonstrate that multiple factors influence dicing kinetics. While TRBP stimulates dicing by enhancing the stability of Dicer substrate complexes, Dicer itself generates product RNAs at rates determined at least in part by the structural properties of the substrate. (c) 2010 Elsevier Ltd. All rights reserved.
C1 [Chakravarthy, Srinivas; Doudna, Jennifer A.] Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USA.
   [Chakravarthy, Srinivas; Doudna, Jennifer A.] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA.
   [Sternberg, Samuel H.; Kellenberger, Colleen A.; Doudna, Jennifer A.] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA.
   [Doudna, Jennifer A.] Univ Calif Berkeley, Lawrence Berkeley Lab, Phys Biosci Div, Berkeley, CA 94720 USA.
RP Doudna, JA (reprint author), Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USA.
EM doudna@berkeley.edu
FU NIGMS NIH HHS [R01 GM073794, R01 GM073794-04]
NR 37
TC 62
Z9 64
U1 1
U2 15
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0022-2836
J9 J MOL BIOL
JI J. Mol. Biol.
PD DEC 3
PY 2010
VL 404
IS 3
BP 392
EP 402
DI 10.1016/j.jmb.2010.09.030
PG 11
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 695LX
UT WOS:000285372700005
PM 20932845
ER

PT J
AU El Bakkouri, M
   Pow, A
   Mulichak, A
   Cheung, KLY
   Artz, JD
   Amani, M
   Fell, S
   de Koning-Ward, TF
   Goodman, CD
   McFaddens, GI
   Ortega, J
   Hui, R
   Houry, WA
AF El Bakkouri, Majida
   Pow, Andre
   Mulichak, Anne
   Cheung, Kevin L. Y.
   Artz, Jennifer D.
   Amani, Mehrnaz
   Fell, Stuart
   de Koning-Ward, Tania F.
   Goodman, C. Dean
   McFaddens, Geoffrey I.
   Ortega, Joaquin
   Hui, Raymond
   Houry, Walid A.
TI The Clp Chaperones and Proteases of the Human Malaria Parasite
   Plasmodium falciparum
SO JOURNAL OF MOLECULAR BIOLOGY
LA English
DT Article
DE Plasmodium falciparum; apicoplast; PfClp ATPases; PfClp proteases;
   protein homeostasis
ID ATP-DEPENDENT PROTEASE; PREDICTING COILED COILS; ESCHERICHIA-COLI CLPP;
   AAA PLUS PROTEINS; MOLECULAR CHAPERONE; CRYSTAL-STRUCTURE;
   COMPLEX-FORMATION; APICOPLAST; PROTEOLYSIS; IDENTIFICATION
AB The Clp chaperones and proteases play an important role in protein homeostasis in the cell. They are highly conserved across prokaryotes and found also in the mitochondria of eukaryotes and the chloroplasts of plants. They function mainly in the disaggregation, unfolding and degradation of native as well as misfolded proteins. Here, we provide a comprehensive analysis of the Clp chaperones and proteases in the human malaria parasite Plasmodium falciparum. The parasite contains four Clp ATPases, which we term PfClpB1, PfClpB2, PfClpC and PfClpM. One PfClpP, the proteolytic subunit, and one PfClpR, which is an inactive version of the protease, were also identified. Expression of all Clp chaperones and proteases was confirmed in blood-stage parasites. The proteins were localized to the apicoplast, a non-photosynthetic organelle that accommodates several important metabolic pathways in P. falciparum, with the exception of PfClpB2 (also known as Hsp101), which was found in the parasitophorous vacuole. Both PfClpP and PfClpR form mostly homoheptameric rings as observed by size-exclusion chromatography, analytical ultracentrifugation and electron microscopy. The X-ray structure of PfClpP showed the protein as a compacted tetradecamer similar to that observed for Streptococcus pneumoniae and Mycobacterium tuberculosis ClpPs. Our data suggest the presence of a ClpCRP complex in the apicoplast of P. falciparum. (c) 2010 Elsevier Ltd. All rights reserved.
C1 [El Bakkouri, Majida; Pow, Andre; Houry, Walid A.] Univ Toronto, Dept Biochem, Toronto, ON M5S 1A8, Canada.
   [Mulichak, Anne] Argonne Natl Lab, IMCA CAT, Argonne, IL 60439 USA.
   [Cheung, Kevin L. Y.; Ortega, Joaquin] McMaster Univ, Dept Biochem & Biomed Sci, Hamilton, ON L8N 3Z5, Canada.
   [Cheung, Kevin L. Y.; Ortega, Joaquin] McMaster Univ, MG DeGroote Inst Infect Dis Res, Hamilton, ON L8N 3Z5, Canada.
   [Artz, Jennifer D.; Amani, Mehrnaz; Hui, Raymond] Univ Toronto, Struct Genom Consortium, Toronto, ON M5G 1L5, Canada.
   [Fell, Stuart; Goodman, C. Dean; McFaddens, Geoffrey I.] Univ Melbourne, Sch Bot, Parkville, Vic 3010, Australia.
   [de Koning-Ward, Tania F.] Deakin Univ, Sch Med, Waurn Ponds, Vic 3217, Australia.
RP Houry, WA (reprint author), Univ Toronto, Dept Biochem, Toronto, ON M5S 1A8, Canada.
EM walid.houry@utoronto.ca
RI McFadden, Geoffrey McFadden/F-7667-2014; 
OI Artz, Jennifer/0000-0003-0500-6156
FU Canadian Institutes of Health Research [MOP-67210, MOP-82930]; Canadian
   Foundation for Innovation, Genome Canada through the Ontario Genomics
   Institute, GlaxoSmithKline; Knut and Alice Wallenberg Foundation;
   Ontario Innovation Trust; Ontario Ministry for Research and Innovation;
   Merck Co. Inc.; Novartis Research Foundation; Petrus and Augusta
   Hedlund's Foundation; Swedish Agency for Innovation Systems; Swedish
   Foundation for Strategic Research; Wellcome Trust; Crystallography
   Association through a contract with the University of Chicago; U.S.
   Department of Energy, Office of Science, Office of Basic Energy Sciences
   [W-31-109-Eng-38]; Office of Biological and Environmental Research;
   Basic Energy Sciences of the U.S. Department of Energy; National Center
   for Research Resources of the National Institutes of Health
FX W.A.H. and A.P. thank Dr Kevin C. Kain and his student Kodjo Ayi at the
   University of Toronto for their help with parasite work. J.O. and
   K.L.Y.C. acknowledge Joel Kooistra for early electron microscopy work on
   this project. M.E.B. is a postdoctoral fellow of the Canadian Institutes
   of Health Research Training Program in Protein Folding and Interaction
   Dynamics: Principles and Diseases. A.P. is a graduate student of the
   Canadian Institutes of Health Research Training Program in Protein
   Folding: Principles and Diseases. This work was supported by grants from
   the Canadian Institutes of Health Research to W.A.H. (MOP-67210) and
   J.O. (MOP-82930). J.O. is a Canadian Institutes of Health Research New
   Investigator. G.I.M. is an Australian Research Council Federation Fellow
   and a Howard Hughes International Research Scholar. Program Grant
   support from the National Health and Medical Research Council of
   Australia is gratefully acknowledged. The Australian Red Cross
   generously supplied human red blood cells. The Structural Genomics
   Consortium is a registered charity (number 1097737) that receives funds
   from the Canadian Institutes for Health Research, the Canadian
   Foundation for Innovation, Genome Canada through the Ontario Genomics
   Institute, GlaxoSmithKline, the Knut and Alice Wallenberg Foundation,
   the Ontario Innovation Trust, the Ontario Ministry for Research and
   Innovation, Merck & Co. Inc., the Novartis Research Foundation, the
   Petrus and Augusta Hedlund's Foundation, the Swedish Agency for
   Innovation Systems, the Swedish Foundation for Strategic Research and
   the Wellcome Trust. Use of the IMCA-CAT beamline 17ID at the Advanced
   Photon Source was supported by the member companies of the Industrial
   Macromolecular Crystallography Association through a contract with the
   University of Chicago. Use of the Advanced Photon Source was supported
   by the U.S. Department of Energy, Office of Science, Office of Basic
   Energy Sciences, under contract number W-31-109-Eng-38. Use of beamline
   X25 of the National Synchrotron Light Source was supported principally
   from the Office of Biological and Environmental Research and of Basic
   Energy Sciences of the U.S. Department of Energy, and the National
   Center for Research Resources of the National Institutes of Health.
NR 91
TC 26
Z9 26
U1 1
U2 9
PU ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD
PI LONDON
PA 24-28 OVAL RD, LONDON NW1 7DX, ENGLAND
SN 0022-2836
J9 J MOL BIOL
JI J. Mol. Biol.
PD DEC 3
PY 2010
VL 404
IS 3
BP 456
EP 477
DI 10.1016/j.jmb.2010.09.051
PG 22
WC Biochemistry & Molecular Biology
SC Biochemistry & Molecular Biology
GA 695LX
UT WOS:000285372700009
PM 20887733
ER

PT J
AU Koech, PK
   Polikarpov, E
   Rainbolt, JE
   Cosimbescu, L
   Swensen, JS
   Von Ruden, AL
   Padmaperuma, AB
AF Koech, Phillip K.
   Polikarpov, Evgueni
   Rainbolt, James E.
   Cosimbescu, Lelia
   Swensen, James S.
   Von Ruden, Amber L.
   Padmaperuma, Asanga B.
TI Synthesis and Application of Pyridine-Based Ambipolar Hosts: Control of
   Charge Balance in Organic Light-Emitting Devices by Chemical Structure
   Modification
SO ORGANIC LETTERS
LA English
DT Article
ID PHOSPHORESCENT EMISSION; ENERGY-TRANSFER; ELECTROPHOSPHORESCENCE;
   MOIETIES; OLEDS; LEDS
AB We studied the influence of a pyridine moiety versus a phenyl moiety when introduced in the molecular design of an ambipolar host These pyridine-based host materials for organic light-emitting diodes (OLEDs) were synthesized in three to five steps from commercially available starting materials. The isomeric hosts have similar HOMO/LUMO energies; however, data from OLEDs fabricated using the above host materials demonstrate that small structural modification of the host results in significant changes in its carrier-transporting characteristics.
C1 [Koech, Phillip K.; Polikarpov, Evgueni; Rainbolt, James E.; Cosimbescu, Lelia; Swensen, James S.; Von Ruden, Amber L.; Padmaperuma, Asanga B.] Pacific NW Natl Lab, Energy & Environm Directorate, Richland, WA 99352 USA.
RP Padmaperuma, AB (reprint author), Pacific NW Natl Lab, Energy & Environm Directorate, Richland, WA 99352 USA.
EM asanga.padmaperuma@pnl.gov
OI Koech, Phillip/0000-0003-2996-0593
FU U.S. Department of Energy (US DOE) [M68004043]; US Department of Energy
   [DE_AC06-76RLO 1830]
FX This project was funded by the Solid State Lighting Program of the U.S.
   Department of Energy (US DOE), with the Building Technologies Program
   (BT) (Award No. M68004043 managed by the National Energy Technology
   Laboratory (NETL). A portion of this research was performed using EMSL.
   Computations were carried out using "NWChem, A Computational Chemistry
   Package for Parallel Computers, Version 5.1" (2007). Pacific Northwest
   National Laboratory (PNNL) is operated by Battelle Memorial Institute
   for the US Department of Energy under Contract DE_AC06-76RLO 1830. We
   thank Dr. Rui Zhane (PNNL) for performing electrospray ionization mass
   spectrometry.
NR 28
TC 31
Z9 31
U1 0
U2 8
PU AMER CHEMICAL SOC
PI WASHINGTON
PA 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
SN 1523-7060
J9 ORG LETT
JI Org. Lett.
PD DEC 3
PY 2010
VL 12
IS 23
BP 5534
EP 5537
DI 10.1021/ol102444j
PG 4
WC Chemistry, Organic
SC Chemistry
GA 684NC
UT WOS:000284555600045
PM 21053914
ER

PT J
AU He, JQ
   Volkov, VV
   Asaka, T
   Chaudhuri, S
   Budhani, RC
   Zhu, Y
AF He, J. Q.
   Volkov, V. V.
   Asaka, T.
   Chaudhuri, S.
   Budhani, R. C.
   Zhu, Y.
TI Competing two-phase coexistence in doped manganites: Direct observations
   by in situ Lorentz electron microscopy
SO PHYSICAL REVIEW B
LA English
DT Article
ID PHASE-SEPARATED MANGANITES; WETTING TRANSITIONS; CHARGE; LA0.5CA0.5MNO3;
   PEROVSKITES; PERCOLATION; EQUATION
AB We examined thin epitaxial films La5/8-yPryCa3/8MnO3 (LPCMO: y=0.275-0.3) in situ by Lorentz transmission electron microscopy (TEM) and other microscopy methods. Clear evidence was obtained for the competing two-phase coexistence of antiferromagnetic charge-ordered (CO) and ferromagnetic (FM) phases that exhibit mesoscale phase separation below the metal-to-insulator transition (MIT) at similar to 164 K. In addition, we observed some regions of mixed CO-and FM-domain contrast attributed earlier to formation of the new CO-FM phase. Using in situ heating/cooling TEM experiments, we interpret this effect as the interfacial wetting phenomenon inherent to the first-order CO-FM phase transition, rather than to the formation of new CO-FM phase. It is evidenced by the partial magnetic melting of CO phase at interfaces with the FM phase, thereby creating charge-disordered spin-glass metastates. For coexisting CO-and FM-domain configurations, we directly refined the relationship between charge-orbital and spin-ordering vectors, consistent with FM moments pinned by (101)-crystal twins in LPCMO films. We also discuss the striking linear dependence observed below MIT for the log-resistance behavior and the CO fraction in LPCMO directly measured by TEM. Such linear dependence does not follow typical percolation equations, suggesting that percolation model needs further revisions for transport description of manganites.
C1 [He, J. Q.; Volkov, V. V.; Asaka, T.; Zhu, Y.] Brookhaven Natl Lab, Condensed Matter Phys & Mat Sci Dept, Upton, NY 11973 USA.
   [Chaudhuri, S.; Budhani, R. C.] Indian Inst Technol, Dept Phys, Condensed Matter Low Dimens Syst Lab, Kanpur 208016, Uttar Pradesh, India.
   [Budhani, R. C.] Natl Phys Lab, New Delhi 110012, India.
RP He, JQ (reprint author), Northwestern Univ, Dept Chem, 2145 Sheridan Rd, Evanston, IL 60208 USA.
EM jiaqing-he@northwestern.edu; volkov@bnl.gov
RI Chaudhuri, Saumyadip/C-6883-2011; He, Jiaqing/A-2245-2010; Volkov,
   Vyacheslav/D-9786-2016
FU U.S. Department of Energy, Office of Basic Energy Science
   [DE-AC02-98CH10886]; BRNS, Government of India; Indo-French Centre for
   Promotion of Advanced Research, New Delhi
FX This work at BNL was supported by the U.S. Department of Energy, Office
   of Basic Energy Science, under Contract No. DE-AC02-98CH10886. Research
   in India was supported by grants from the BRNS, Government of India and
   the Indo-French Centre for Promotion of Advanced Research, New Delhi.
NR 32
TC 15
Z9 15
U1 6
U2 58
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 2469-9950
EI 2469-9969
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 3
PY 2010
VL 82
IS 22
AR 224404
DI 10.1103/PhysRevB.82.224404
PG 9
WC Physics, Condensed Matter
SC Physics
GA 713RY
UT WOS:000286756300002
ER

PT J
AU Ryan, DH
   Cadogan, JM
   Cranswick, LMD
   Gschneidner, KA
   Pecharsky, VK
   Mudryk, Y
AF Ryan, D. H.
   Cadogan, J. M.
   Cranswick, L. M. D.
   Gschneidner, Karl A., Jr.
   Pecharsky, V. K.
   Mudryk, Y.
TI Structural and magnetic transitions in Gd5SixGe4-x (0 <= x <= 0.9) from
   neutron powder diffraction
SO PHYSICAL REVIEW B
LA English
DT Article
ID PHASE-RELATIONSHIPS; GD5SI4-GD5GE4; ALLOYS; SYSTEM
AB Gd5SixGe4-x (0 <= x <= 0.9) has been studied using neutron powder diffraction at a wavelength of 2.3724 angstrom. Antiferromagnetic ordering of the full 7 mu(B) Gd moments in the Pnm'a magnetic space group is seen for Gd5Ge4, with the moments predominantly parallel to the c axis, with a significant a-axis component at the Gd 8d(2) site. The remarkably strong (010) antiferromagnetic reflection has been used to map out the structural and magnetic phase diagram for this system and show that the O(II)-> O(I) structural transformation never proceeds to completion in zero field. The absence of scattering that could be attributed to long-range FM order in the O(I) modification suggests that an externally applied field may be needed to stabilize the ferromagnetic state.
C1 [Ryan, D. H.] McGill Univ, Ctr Phys Mat, Montreal, PQ H3A 2T8, Canada.
   [Ryan, D. H.] McGill Univ, Dept Phys, Montreal, PQ H3A 2T8, Canada.
   [Cadogan, J. M.] Univ Manitoba, Dept Phys & Astron, Winnipeg, MB R3T 2N2, Canada.
   [Cranswick, L. M. D.] NRCC, Canadian Neutron Beam Ctr, Chalk River Labs, Chalk River, ON K0J 1J0, Canada.
   [Gschneidner, Karl A., Jr.; Pecharsky, V. K.; Mudryk, Y.] Iowa State Univ, Ames Lab, US Dept Energy, Ames, IA 50011 USA.
   [Gschneidner, Karl A., Jr.; Pecharsky, V. K.] Iowa State Univ, Dept Mat Sci & Engn, Ames, IA 50011 USA.
RP Ryan, DH (reprint author), McGill Univ, Ctr Phys Mat, Montreal, PQ H3A 2T8, Canada.
FU Natural Sciences and Engineering Research Council of Canada; Fonds
   Quebecois de la Recherche sur la Nature et les Technologies; Canada
   Research Chairs program; Office of Basic Energy Sciences, Materials
   Sciences Division of the U.S. Department of Energy [DE-AC02-07CH11358];
   Iowa State University
FX This work was supported by grants from the Natural Sciences and
   Engineering Research Council of Canada and Fonds Quebecois de la
   Recherche sur la Nature et les Technologies. J.M.C. is grateful to the
   Canada Research Chairs program for its support. Work at Ames Laboratory
   is supported by the Office of Basic Energy Sciences, Materials Sciences
   Division of the U. S. Department of Energy under Contract No.
   DE-AC02-07CH11358 with Iowa State University.
NR 23
TC 11
Z9 11
U1 0
U2 7
PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-0121
J9 PHYS REV B
JI Phys. Rev. B
PD DEC 3
PY 2010
VL 82
IS 22
AR 224405
DI 10.1103/PhysRevB.82.224405
PG 6
WC Physics, Condensed Matter
SC Physics
GA 713RY
UT WOS:000286756300003
ER

PT J
AU Aaltonen, T
   Gonzalez, BA
   Amerio, S
   Amidei, D
   Anastassov, A
   Annovi, A
   Antos, J
   Apollinari, G
   Appel, JA
   Apresyan, A
   Arisawa, T
   Artikov, A
   Asaadi, J
   Ashmanskas, W
   Auerbach, B
   Aurisano, A
   Azfar, F
   Badgett, W
   Barbaro-Galtieri, A
   Barnes, VE
   Barnett, BA
   Barria, P
   Bartos, P
   Bauce, M
   Bauer, G
   Bedeschi, F
   Beecher, D
   Behari, S
   Bellettini, G
   Bellinger, J
   Benjamin, D
   Beretvas, A
   Bhatti, A
   Binkley, M
   Bisello, D
   Bizjak, I
   Bland, KR
   Blocker, C
   Blumenfeld, B
   Bocci, A
   Bodek, A
   Bortoletto, D
   Boudreau, J
   Boveia, A
   Brau, B
   Brigliadori, L
   Brisuda, A
   Bromberg, C
   Brucken, E
   Bucciantonio, M
   Budagov, J
   Budd, HS
   Budd, S
   Burkett, K
   Busetto, G
   Bussey, P
   Buzatu, A
   Cabrera, S
   Calancha, C
   Camarda, S
   Campanelli, M
   Campbell, M
   Canelli, F
   Canepa, A
   Carls, B
   Carlsmith, D
   Carosi, R
   Carrillo, S
   Carron, S
   Casal, B
   Casarsa, M
   Castro, A
   Catastini, P
   Cauz, D
   Cavaliere, V
   Cavalli-Sforza, M
   Cerri, A
   Cerrito, L
   Chen, YC
   Chertok, M
   Chiarelli, G
   Chlachidze, G
   Chlebana, F
   Cho, K
   Chokheli, D
   Chou, JP
   Chung, WH
   Chung, YS
   Ciobanu, CI
   Ciocci, MA
   Clark, A
   Clark, D
   Compostella, G
   Convery, ME
   Conway, J
   Corbo, M
   Cordelli, M
   Cox, CA
   Cox, DJ
   Crescioli, F
   Almenar, CC
   Cuevas, J
   Culbertson, R
   Dagenhart, D
   d'Ascenzo, N
   Datta, M
   de Barbaro, P
   De Cecco, S
   De Lorenzo, G
   Dell'Orso, M
   Deluca, C
   Demortier, L
   Deng, J
   Deninno, M
   Devoto, F
   d'Errico, M
   Di Canto, A
   Di Ruzza, B
   Dittmann, JR
   D'Onofrio, M
   Donati, S
   Dong, P
   Dorigo, T
   Ebina, K
   Elagin, A
   Eppig, A
   Erbacher, R
   Errede, D
   Errede, S
   Ershaidat, N
   Eusebi, R
   Fang, HC
   Farrington, S
   Feindt, M
   Fernandez, JP
   Ferrazza, C
   Field, R
   Flanagan, G
   Forrest, R
   Frank, MJ
   Franklin, M
   Freeman, JC
   Furic, I
   Gallinaro, M
   Galyardt, J
   Garcia, JE
   Garfinkel, AF
   Garosi, P
   Gerberich, H
   Gerchtein, E
   Giagu, S
   Giakoumopoulou, V
   Giannetti, P
   Gibson, K
   Ginsburg, CM
   Giokaris, N
   Giromini, P
   Giunta, M
   Giurgiu, G
   Glagolev, V
   Glenzinski, D
   Gold, M
   Goldin, D
   Goldschmidt, N
   Golossanov, A
   Gomez, G
   Gomez-Ceballos, G
   Goncharov, M
   Gonzalez, O
   Gorelov, I
   Goshaw, AT
   Goulianos, K
   Gresele, A
   Grinstein, S
   Grosso-Pilcher, C
   Group, RC
   da Costa, JG
   Gunay-Unalan, Z
   Haber, C
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   Halkiadakis, E
   Hamaguchi, A
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   Hays, C
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   Heinrich, J
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   Hewamanage, S
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   Hopkins, W
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   Husemann, U
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   Kilminster, B
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   Lockwitz, S
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   Yun, JC
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   Zeng, Y
   Zucchelli, S
AF Aaltonen, T.
   Alvarez Gonzalez, B.
   Amerio, S.
   Amidei, D.
   Anastassov, A.
   Annovi, A.
   Antos, J.
   Apollinari, G.
   Appel, J. A.
   Apresyan, A.
   Arisawa, T.
   Artikov, A.
   Asaadi, J.
   Ashmanskas, W.
   Auerbach, B.
   Aurisano, A.
   Azfar, F.
   Badgett, W.
   Barbaro-Galtieri, A.
   Barnes, V. E.
   Barnett, B. A.
   Barria, P.
   Bartos, P.
   Bauce, M.
   Bauer, G.
   Bedeschi, F.
   Beecher, D.
   Behari, S.
   Bellettini, G.
   Bellinger, J.
   Benjamin, D.
   Beretvas, A.
   Bhatti, A.
   Binkley, M.
   Bisello, D.
   Bizjak, I.
   Bland, K. R.
   Blocker, C.
   Blumenfeld, B.
   Bocci, A.
   Bodek, A.
   Bortoletto, D.
   Boudreau, J.
   Boveia, A.
   Brau, B.
   Brigliadori, L.
   Brisuda, A.
   Bromberg, C.
   Brucken, E.
   Bucciantonio, M.
   Budagov, J.
   Budd, H. S.
   Budd, S.
   Burkett, K.
   Busetto, G.
   Bussey, P.
   Buzatu, A.
   Cabrera, S.
   Calancha, C.
   Camarda, S.
   Campanelli, M.
   Campbell, M.
   Canelli, F.
   Canepa, A.
   Carls, B.
   Carlsmith, D.
   Carosi, R.
   Carrillo, S.
   Carron, S.
   Casal, B.
   Casarsa, M.
   Castro, A.
   Catastini, P.
   Cauz, D.
   Cavaliere, V.
   Cavalli-Sforza, M.
   Cerri, A.
   Cerrito, L.
   Chen, Y. C.
   Chertok, M.
   Chiarelli, G.
   Chlachidze, G.
   Chlebana, F.
   Cho, K.
   Chokheli, D.
   Chou, J. P.
   Chung, W. H.
   Chung, Y. S.
   Ciobanu, C. I.
   Ciocci, M. A.
   Clark, A.
   Clark, D.
   Compostella, G.
   Convery, M. E.
   Conway, J.
   Corbo, M.
   Cordelli, M.
   Cox, C. A.
   Cox, D. J.
   Crescioli, F.
   Almenar, C. Cuenca
   Cuevas, J.
   Culbertson, R.
   Dagenhart, D.
   d'Ascenzo, N.
   Datta, M.
   de Barbaro, P.
   De Cecco, S.
   De Lorenzo, G.
   Dell'Orso, M.
   Deluca, C.
   Demortier, L.
   Deng, J.
   Deninno, M.
   Devoto, F.
   d'Errico, M.
   Di Canto, A.
   Di Ruzza, B.
   Dittmann, J. R.
   D'Onofrio, M.
   Donati, S.
   Dong, P.
   Dorigo, T.
   Ebina, K.
   Elagin, A.
   Eppig, A.
   Erbacher, R.
   Errede, D.
   Errede, S.
   Ershaidat, N.
   Eusebi, R.
   Fang, H. C.
   Farrington, S.
   Feindt, M.
   Fernandez, J. P.
   Ferrazza, C.
   Field, R.
   Flanagan, G.
   Forrest, R.
   Frank, M. J.
   Franklin, M.
   Freeman, J. C.
   Furic, I.
   Gallinaro, M.
   Galyardt, J.
   Garcia, J. E.
   Garfinkel, A. F.
   Garosi, P.
   Gerberich, H.
   Gerchtein, E.
   Giagu, S.
   Giakoumopoulou, V.
   Giannetti, P.
   Gibson, K.
   Ginsburg, C. M.
   Giokaris, N.
   Giromini, P.
   Giunta, M.
   Giurgiu, G.
   Glagolev, V.
   Glenzinski, D.
   Gold, M.
   Goldin, D.
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CA CDF Collaboration
TI Direct Top-Quark Width Measurement at CDF
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID HEAVY QUARKS; DECAY; PHYSICS
AB We present a measurement of the top-quark width in the lepton + jets decay channel of t (t) over bar events produced in p (p) over bar collisions at Fermilab's Tevatron collider and collected by the CDF II detector. From a data sample corresponding to 4.3 fb(-1) of integrated luminosity, we identify 756 candidate events. The top-quark mass and the mass of the hadronically decaying W boson that comes from the top-quark decay are reconstructed for each event and compared with templates of different top-quark widths (Gamma(t)) and deviations from nominal jet energy scale (Delta(JES)) to perform a simultaneous fit for both parameters, where Delta(JES) is used for the in situ calibration of the jet energy scale. By applying a Feldman-Cousins approach, we establish an upper limit at 95% confidence level (CL) of Gamma(t) < 7.6 GeV and a two-sided 68% CL interval of 0.3 GeV < Gamma(t) < 4.4 GeV for a top-quark mass of 172.5 GeV/c(2), which are consistent with the standard model prediction.
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   [Giagu, S.; Iori, M.] Univ Roma La Sapienza, I-00185 Rome, Italy.
   [Halkiadakis, E.; Hare, D.; Hidas, D.; Lath, A.; Somalwar, S.] Rutgers State Univ, Piscataway, NJ 08855 USA.
   [Asaadi, J.; Aurisano, A.; Elagin, A.; Eusebi, R.; Goldin, D.; Kamon, T.; Khotilovich, V.; Krutelyov, V.; Lee, E.; Lee, S. W.; McIntyre, P.; Safonov, A.; Toback, D.; Weinberger, M.] Texas A&M Univ, College Stn, TX 77843 USA.
   [Cauz, D.; Pagliarone, C.; Pauletta, G.; Penzo, A.; Rossi, M.; Santi, L.; Totaro, P.; Zanetti, A.] Ist Nazl Fis Nucl Trieste Udine, I-33100 Udine, Italy.
   [Cauz, D.; Pagliarone, C.; Pauletta, G.; Penzo, A.; Rossi, M.; Santi, L.; Totaro, P.; Zanetti, A.] Ist Nazl Fis Nucl Trieste Udine, I-34100 Trieste, Italy.
   [Pauletta, G.; Santi, L.; Totaro, P.] Univ Trieste Udine, I-33100 Udine, Italy.
   [Hara, K.; Kim, S. H.; Kurata, M.; Miyake, H.; Nagai, Y.; Sato, K.; Shimojima, M.; Sudo, Y.; Takemasa, K.; Takeuchi, Y.; Tomura, T.; Ukegawa, F.] Univ Tsukuba, Tsukuba, Ibaraki 305, Japan.
   [Hare, M.; Napier, A.; Rolli, S.; Sliwa, K.; Whitehouse, B.] Tufts Univ, Medford, MA 02155 USA.
   [Arisawa, T.; Castro, A.; Dorigo, T.; Ebina, K.; Kimura, N.; Kondo, K.; Naganoma, J.; Yorita, K.] Waseda Univ, Tokyo 169, Japan.
   [Harr, R. F.; Karchin, P. E.; Mattson, M. E.] Wayne State Univ, Detroit, MI 48201 USA.
   [Bellinger, J.; Carlsmith, D.; Chung, W. H.; Herndon, M.; Nett, J.; Pondrom, L.; Pursley, J.; Ramakrishnan, V.] Univ Wisconsin, Madison, WI 53706 USA.
   [Auerbach, B.; Almenar, C. Cuenca; Husemann, U.; Lockwitz, S.; Loginov, A.; Schmidt, M. P.; Stanitzki, M.] Yale Univ, New Haven, CT 06520 USA.
RP Aaltonen, T (reprint author), Univ Helsinki, Dept Phys, Div High Energy Phys, FIN-00014 Helsinki, Finland.
RI Introzzi, Gianluca/K-2497-2015; Piacentino, Giovanni/K-3269-2015;
   Martinez Ballarin, Roberto/K-9209-2015; Gorelov, Igor/J-9010-2015;
   Prokoshin, Fedor/E-2795-2012; Canelli, Florencia/O-9693-2016; Ruiz,
   Alberto/E-4473-2011; Lysak, Roman/H-2995-2014; Robson,
   Aidan/G-1087-2011; De Cecco, Sandro/B-1016-2012; St.Denis,
   Richard/C-8997-2012; manca, giulia/I-9264-2012; Amerio,
   Silvia/J-4605-2012; Punzi, Giovanni/J-4947-2012; Zeng, Yu/C-1438-2013;
   Annovi, Alberto/G-6028-2012; Ivanov, Andrew/A-7982-2013; Warburton,
   Andreas/N-8028-2013; Kim, Soo-Bong/B-7061-2014; Moon,
   Chang-Seong/J-3619-2014; Scodellaro, Luca/K-9091-2014; Grinstein,
   Sebastian/N-3988-2014; Paulini, Manfred/N-7794-2014; Russ,
   James/P-3092-2014; unalan, zeynep/C-6660-2015; Lazzizzera,
   Ignazio/E-9678-2015; vilar, rocio/P-8480-2014; Cabrera Urban,
   Susana/H-1376-2015; Garcia, Jose /H-6339-2015; Cavalli-Sforza,
   Matteo/H-7102-2015; ciocci, maria agnese /I-2153-2015; Chiarelli,
   Giorgio/E-8953-2012
OI Introzzi, Gianluca/0000-0002-1314-2580; Piacentino,
   Giovanni/0000-0001-9884-2924; Martinez Ballarin,
   Roberto/0000-0003-0588-6720; Gorelov, Igor/0000-0001-5570-0133;
   Prokoshin, Fedor/0000-0001-6389-5399; Canelli,
   Florencia/0000-0001-6361-2117; Simonenko, Alexander/0000-0001-6580-3638;
   Lancaster, Mark/0000-0002-8872-7292; Ruiz, Alberto/0000-0002-3639-0368;
   Punzi, Giovanni/0000-0002-8346-9052; Annovi,
   Alberto/0000-0002-4649-4398; Ivanov, Andrew/0000-0002-9270-5643;
   Warburton, Andreas/0000-0002-2298-7315; Casarsa,
   Massimo/0000-0002-1353-8964; Latino, Giuseppe/0000-0002-4098-3502; iori,
   maurizio/0000-0002-6349-0380; Gallinaro, Michele/0000-0003-1261-2277;
   Turini, Nicola/0000-0002-9395-5230; Brucken, Jens
   Erik/0000-0001-6066-8756; Moon, Chang-Seong/0000-0001-8229-7829;
   Scodellaro, Luca/0000-0002-4974-8330; Grinstein,
   Sebastian/0000-0002-6460-8694; Paulini, Manfred/0000-0002-6714-5787;
   Russ, James/0000-0001-9856-9155; unalan, zeynep/0000-0003-2570-7611;
   Lazzizzera, Ignazio/0000-0001-5092-7531; ciocci, maria agnese
   /0000-0003-0002-5462; Chiarelli, Giorgio/0000-0001-9851-4816
FU U.S. Department of Energy; National Science Foundation; Italian Istituto
   Nazionale di Fisica Nucleare; Ministry of Education, Culture, Sports,
   Science and Technology of Japan; Natural Sciences and Engineering
   Research Council of Canada; National Science Council of the Republic of
   China; Swiss National Science Foundation; A.P. Sloan Foundation;
   Bundesministerium fur Bildung und Forschung, Germany; World Class
   University; National Research Foundation of Korea; Science and
   Technology Facilities Council; Royal Society, UK; Institut National de
   Physique Nucleaire et Physique des Particules/CNRS; Russian Foundation
   for Basic Research; Ministerio de Ciencia e Innovacion, Spain; Slovak RD
   Agency; Academy of Finland
FX We thank the Fermilab staff and the technical staffs of the
   participating institutions for their vital contributions. This work was
   supported by the U.S. Department of Energy and National Science
   Foundation; the Italian Istituto Nazionale di Fisica Nucleare; the
   Ministry of Education, Culture, Sports, Science and Technology of Japan;
   the Natural Sciences and Engineering Research Council of Canada; the
   National Science Council of the Republic of China; the Swiss National
   Science Foundation; the A.P. Sloan Foundation; the Bundesministerium fur
   Bildung und Forschung, Germany; the World Class University Program, the
   National Research Foundation of Korea; the Science and Technology
   Facilities Council and the Royal Society, UK; the Institut National de
   Physique Nucleaire et Physique des Particules/CNRS; the Russian
   Foundation for Basic Research; the Ministerio de Ciencia e Innovacion,
   and Programa Consolider-Ingenio 2010, Spain; the Slovak R&D Agency; and
   the Academy of Finland.
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SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 3
PY 2010
VL 105
IS 23
AR 232003
DI 10.1103/PhysRevLett.105.232003
PG 7
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SC Physics
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UT WOS:000286736800007
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ER

PT J
AU Boekelheide, Z
   Gray, AX
   Papp, C
   Balke, B
   Stewart, DA
   Ueda, S
   Kobayashi, K
   Hellman, F
   Fadley, CS
AF Boekelheide, Z.
   Gray, A. X.
   Papp, C.
   Balke, B.
   Stewart, D. A.
   Ueda, S.
   Kobayashi, K.
   Hellman, F.
   Fadley, C. S.
TI Band Gap and Electronic Structure of an Epitaxial, Semiconducting
   Cr0.80Al0.20 Thin Film
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID PHOTOELECTRON ANGULAR-DISTRIBUTION; DENSITY-WAVE ANTIFERROMAGNETISM;
   CR-AL ALLOYS; TRANSPORT-PROPERTIES; CHROMIUM-ALLOYS; SOLID-SOLUTIONS;
   HEUSLER ALLOYS; ELEMENTS; SPECTROSCOPY; RANGE
AB Cr1-xAlx exhibits semiconducting behavior for x = 0.15-0.26. This Letter uses hard x-ray photoemission spectroscopy and density functional theory to further understand the semiconducting behavior. Photoemission measurements of an epitaxial Cr0.80Al0.20 thin film show several features in the valence band region, including a gap at the Fermi energy (E-F) for which the valence band edge is 95 +/- 14 meV below E-F. Theory agrees well with the valence band measurements, and shows an incomplete gap at E-F due to the hole band at M shifting almost below E-F.
C1 [Boekelheide, Z.; Hellman, F.] Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
   [Boekelheide, Z.; Gray, A. X.; Papp, C.; Balke, B.; Hellman, F.; Fadley, C. S.] Univ Calif Berkeley, Lawrence Berkeley Lab, Div Mat Sci, Berkeley, CA 94720 USA.
   [Gray, A. X.; Fadley, C. S.] Univ Calif Davis, Dept Phys, Davis, CA 95616 USA.
   [Papp, C.] Univ Erlangen Nurnberg, Lehrstuhl Phys Chem 2, D-91058 Erlangen, Germany.
   [Balke, B.] Johannes Gutenberg Univ Mainz, Inst Anorgan & Analyt Chem, D-55099 Mainz, Germany.
   [Stewart, D. A.] Cornell Univ, Cornell Nanoscale Facil, Ithaca, NY 14853 USA.
   [Ueda, S.; Kobayashi, K.] Natl Inst Mat Sci, SPring 8, NIMS Beamline Stn, Hyogo 6785148, Japan.
RP Boekelheide, Z (reprint author), Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA.
EM zboekelheide@berkeley.edu
RI Gray, Alexander/F-9267-2011; Balke, Benjamin/A-5958-2009; MSD,
   Nanomag/F-6438-2012; UEDA, Shigenori/H-2991-2011; Stewart,
   Derek/B-6115-2008; Papp, Christian /N-7738-2013; 
OI Balke, Benjamin/0000-0003-3275-0634; Papp, Christian
   /0000-0002-1733-4387; Stewart, Derek/0000-0001-7355-2605
FU U.S. Department of Energy [DE-AC02-05CH11231]; MEXT, Japan; Humboldt
   foundation; NSF
FX This work was supported by the U.S. Department of Energy under Contract
   No. DE-AC02-05CH11231 and the Nanotechnology Network Project, MEXT,
   Japan. C. Papp and B. Balke thank the Humboldt foundation for support.
   Calculations were done at the Cornell Nanoscale Facility, part of the
   National Nanotechnology Infrastructure Network (NNIN) funded by the NSF.
   HXPS experiments were approved by NIMS Beamline Station (Proposal No.
   2009A4906).
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 3
PY 2010
VL 105
IS 23
AR 236404
DI 10.1103/PhysRevLett.105.236404
PG 4
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UT WOS:000286736800018
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PT J
AU Kim, YH
   Kang, J
   Wei, SH
AF Kim, Yong-Hyun
   Kang, Joongoo
   Wei, Su-Huai
TI Origin of Enhanced Dihydrogen-Metal Interaction in Carboxylate Bridged
   Cu-2-Paddle-Wheel Frameworks
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID ORGANIC FRAMEWORKS; HYDROGEN STORAGE; SITES; COORDINATION; ADSORPTION
AB The experimentally observed enhancement of hydrogen adsorption in Cu-2-tetracarboxylate paddle-wheel frameworks is investigated by ab initio density-functional theory calculations. We reveal that the puzzling enhancement is due to the effective orbital coupling between the occupied H-2 sigma and the unoccupied Cu 4s-derived states. The nontrivial dihydrogen-metal sigma-s interaction is enabled by a strong localization of the Cu 4s orbital after hybridizing with the neighboring oxygen 2p orbitals. Based on this understanding, we predict that the dihydrogen-metal interaction can be further increased by alloying Cu with s-orbital element Zn or Mg.
C1 [Kim, Yong-Hyun] Korea Adv Inst Sci & Technol, Grad Sch Nanosci & Technol WCU, Taejon 305701, South Korea.
   [Kang, Joongoo; Wei, Su-Huai] Natl Renewable Energy Lab, Golden, CO 80401 USA.
RP Kim, YH (reprint author), Korea Adv Inst Sci & Technol, Grad Sch Nanosci & Technol WCU, Taejon 305701, South Korea.
EM yong.hyun.kim@kaist.ac.kr
RI Kim, Yong-Hyun/C-2045-2011
OI Kim, Yong-Hyun/0000-0003-4255-2068
FU U.S. DOE/OS/BES; DOE/EERE [DE-AC36-08GO28308]; NRF of Korea
   [R31-2008-000-10071-0, 2010-0006922]; office of KAIST EEWS (Energy,
   Environment, Water, and Sustainability) Initiative [EEWS-2010-N01100159]
FX The work at NREL was supported by U.S. DOE/OS/BES and DOE/EERE under
   Contract No. DE-AC36-08GO28308. Y.-H.K. was supported by the WCU program
   (R31-2008-000-10071-0) and Basic Science Research program (2010-0006922)
   through the NRF of Korea and EEWS Research Project (EEWS-2010-N01100159)
   from the office of KAIST EEWS (Energy, Environment, Water, and
   Sustainability) Initiative.
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PU AMER PHYSICAL SOC
PI COLLEGE PK
PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 0031-9007
EI 1079-7114
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 3
PY 2010
VL 105
IS 23
AR 236105
DI 10.1103/PhysRevLett.105.236105
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713KL
UT WOS:000286736800017
PM 21231485
ER

PT J
AU Teweldeberhan, AM
   Dubois, JL
   Bonev, SA
AF Teweldeberhan, A. M.
   Dubois, J. L.
   Bonev, S. A.
TI High-Pressure Phases of Calcium: Density-Functional Theory and Diffusion
   Quantum Monte Carlo Approach
SO PHYSICAL REVIEW LETTERS
LA English
DT Article
ID GENERALIZED GRADIENT APPROXIMATION; SIMPLE-CUBIC CALCIUM;
   MOLECULAR-DYNAMICS; METALS; SURFACE; SOLIDS; ATOMS; CA
AB The phase diagram of Ca is examined using a combination of density-functional theory (DFT) and diffusion quantum Monte Carlo (DMC) calculations. Gibbs free energies of several competing structures are computed at pressures near 50 GPa. Existing disagreements for the stability of Ca both at low and room temperature are resolved with input from DMC. Furthermore, DMC calculations are performed on 0 K crystalline structures up to 150 GPa and it is demonstrated that the widely used generalized gradient approximation of DFT is insufficient to accurately account for the relative stability of the high-pressure phases of Ca. The results indicate that the theoretical phase diagram of Ca needs a revision.
C1 [Teweldeberhan, A. M.; Dubois, J. L.; Bonev, S. A.] Lawrence Livermore Natl Lab, Livermore, CA 94550 USA.
   [Bonev, S. A.] Dalhousie Univ, Dept Phys, Halifax, NS B3H 3J5, Canada.
RP Teweldeberhan, AM (reprint author), Lawrence Livermore Natl Lab, POB 808, Livermore, CA 94550 USA.
EM bonev@llnl.gov
OI DuBois, Jonathan/0000-0003-3154-4273
FU NSERC; ACEnet; CFI
FX Work at LLNL prepared under Co. DE-AC52-07NA27344. A. M. T. and S. A. B.
   acknowledge support from NSERC, ACEnet, and CFI.
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SN 0031-9007
J9 PHYS REV LETT
JI Phys. Rev. Lett.
PD DEC 3
PY 2010
VL 105
IS 23
AR 235503
DI 10.1103/PhysRevLett.105.235503
PG 4
WC Physics, Multidisciplinary
SC Physics
GA 713KL
UT WOS:000286736800014
PM 21231479
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PT J
AU Hahn, H
   Ben-Zvi, I
   Calaga, R
   Hammons, L
   Johnson, EC
   Kewisch, J
   Litvinenko, VN
   Xu, WC
AF Hahn, H.
   Ben-Zvi, I.
   Calaga, R.
   Hammons, L.
   Johnson, E. C.
   Kewisch, J.
   Litvinenko, V. N.
   Xu, Wencan
TI Higher-order-mode absorbers for energy recovery linac cryomodules at
   Brookhaven National Laboratory
SO PHYSICAL REVIEW SPECIAL TOPICS-ACCELERATORS AND BEAMS
LA English
DT Article
AB Several future accelerator projects at Brookhaven for the Relativistic Heavy Ion Collider (RHIC) are based on energy recovery linacs (ERLs) with high-charge high-current electron beams. Their stable operation mandates effective higher-order-mode (HOM) damping. The development of HOM dampers for these projects is pursued actively at this laboratory. Strong HOM damping was experimentally demonstrated both at room and at superconducting (SC) temperatures in a prototype research and development (R&D) five-cell niobium superconducting rf (SRF) cavity with ferrite dampers. Two room-temperature mock-up five-cell copper cavities were used to study various damper configurations with emphasis on capacitive antenna dampers. An innovative type of ferrite damper over a ceramic break for an R&D SRF electron gun also was developed. For future SRF linacs longer cryomodules comprised of multiple superconducting cavities with reasonably short intercavity transitions are planned. In such a configuration, the dampers, located closer to the cavities, will be at cryogenic temperatures; this will impose additional constraints and complications. This paper presents the results of simulations and measurements of several damper configurations.
C1 [Hahn, H.; Ben-Zvi, I.; Calaga, R.; Hammons, L.; Johnson, E. C.; Kewisch, J.; Litvinenko, V. N.; Xu, Wencan] Brookhaven Natl Lab, Upton, NY 11973 USA.
RP Hahn, H (reprint author), Brookhaven Natl Lab, Upton, NY 11973 USA.
EM hahnh@bnl.gov
RI Hammons, Lee/D-6041-2013
OI Hammons, Lee/0000-0001-7066-8960
FU Brookhaven Science Associates, LLC [DE-AC02-98CH10886]; U.S. DOE
FX The authors thank Dr. D. Lowenstein for his advice and comments on the
   manuscript. This work was supported by Brookhaven Science Associates,
   LLC under Contract No. DE-AC02-98CH10886 with the U.S. DOE.
NR 19
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PA ONE PHYSICS ELLIPSE, COLLEGE PK, MD 20740-3844 USA
SN 1098-4402
J9 PHYS REV SPEC TOP-AC
JI Phys. Rev. Spec. Top.-Accel. Beams
PD DEC 3
PY 2010
VL 13
IS 12
AR 121002
DI 10.1103/PhysRevSTAB.13.121002
PG 14
WC Physics, Nuclear; Physics, Particles & Fields
SC Physics
GA 689MJ
UT WOS:000284931400002
ER

EF