TY - JOUR TI - Guest Editorial Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique T2 - IEEE Transactions on Medical Imaging SP - 1153 EP - 1159 AU - H. Greenspan AU - B. van Ginneken AU - R. M. Summers PY - 2016 KW - Artificial neural networks KW - Biomedical image processing KW - Computer vision KW - Data analysis KW - Machine learning KW - Special issues and sections DO - 10.1109/TMI.2016.2553401 JO - IEEE Transactions on Medical Imaging IS - 5 SN - 0278-0062 VO - 35 VL - 35 JA - IEEE Transactions on Medical Imaging Y1 - May 2016 ER - TY - CONF TI - Transforming Medicine: Genomics, Bioinformatics, and Human Health T2 - 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering SP - 1449 EP - 1449 AU - A. D. Baxevanis PY - 2007 KW - biological techniques KW - biology computing KW - cellular transport KW - diseases KW - genetics KW - health care KW - molecular biophysics KW - patient care KW - patient diagnosis KW - bioinformatics KW - genetic disorders KW - genetic pathways KW - genomics KW - health care KW - human disease KW - human genome sequencing KW - human health KW - large-scale clinical genotyping projects KW - medicine transformation KW - molecular diagnosis KW - molecular treatment KW - whole-genome association KW - Bioinformatics KW - Biological information theory KW - Diseases KW - Genetics KW - Genomics KW - Humans KW - Moon KW - Organisms KW - Sequences KW - Technological innovation DO - 10.1109/BIBE.2007.4375768 JO - 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering IS - SN - VO - VL - JA - 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering Y1 - 14-17 Oct. 2007 ER - TY - JOUR TI - Cranial nerve threshold for thermal injury induced by MRI-guided high-intensity focused ultrasound (MRgHIFU): preliminary results on an optic nerve model T2 - IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control SP - 702 EP - 705 AU - S. Harnof AU - Z. Zibly AU - Z. Cohen AU - A. Shaw AU - C. Schlaff AU - N. F. Kassel PY - 2013 KW - biological tissues KW - biomedical MRI KW - biomedical ultrasonics KW - hyperthermia KW - injuries KW - neurophysiology KW - ultrasonic therapy KW - MRI-guided high-intensity focused ultrasound images KW - ablative sonication KW - anesthesia KW - bifrontal craniectomy KW - clinical applications KW - cranial nerve system KW - energy 50 J to 2000 J KW - female domestic pigs KW - hyperthermic ablative sonication KW - magnetic resonance imaging-guided high-intensity focused ultrasound images KW - necrotic zone KW - nervous tissue KW - optic nerve thermo-ablation model KW - temperature 50 degC to 60 degC KW - thermal injury KW - time 6 s to 10 s KW - Animals KW - Cranial Nerve Diseases KW - Cranial Nerves KW - Female KW - High-Intensity Focused Ultrasound Ablation KW - Histocytochemistry KW - Magnetic Resonance Imaging KW - Optic Nerve KW - Optic Nerve Injuries KW - Radiometry KW - Swine DO - 10.1109/TUFFC.2013.2618 JO - IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control IS - 4 SN - 0885-3010 VO - 60 VL - 60 JA - IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control Y1 - April 2013 ER - TY - JOUR TI - CAMS-RS: Clustering Algorithm for Large-Scale Mass Spectrometry Data Using Restricted Search Space and Intelligent Random Sampling T2 - IEEE/ACM Transactions on Computational Biology and Bioinformatics SP - 128 EP - 141 AU - F. Saeed AU - J. D. Hoffert AU - M. A. Knepper PY - 2014 KW - biochemistry KW - mass spectroscopy KW - proteomics KW - CAMS-RS algorithm KW - F-set KW - S-N ratio spectra KW - cluster spectra KW - clustering algorithm-for-mass spectra-using-restricted space-and-sampling KW - conventional spectra-database matching techniques KW - intelligent random sampling KW - large-scale mass spectrometry data KW - raw mass spectrometry KW - restricted search space strategy KW - signal-noise ratio KW - spatial patterns KW - temporal patterns KW - Accuracy KW - Algorithm design and analysis KW - Clustering algorithms KW - Mass spectroscopy KW - Peptides KW - Proteins KW - Mass spectrometry KW - clustering KW - proteomics KW - search space KW - 0 DO - 10.1109/TCBB.2013.152 JO - IEEE/ACM Transactions on Computational Biology and Bioinformatics IS - 1 SN - 1545-5963 VO - 11 VL - 11 JA - IEEE/ACM Transactions on Computational Biology and Bioinformatics Y1 - Jan.-Feb. 2014 ER - TY - CONF TI - Content-based image retrieval on CT colonography using rotation and scale invariant features and bag-of-words model T2 - 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro SP - 1357 EP - 1360 AU - J. M. Aman AU - J. Yao AU - R. M. Summers PY - 2010 KW - biological organs KW - computerised tomography KW - feature extraction KW - image retrieval KW - medical image processing KW - phantoms KW - CT colonography KW - CTCCAD detections KW - computed tomographic colonography computer-aided detection KW - content-based image retrieval KW - differentiate 3D images KW - digital colon phantoms KW - scale invariant feature KW - scale-invariant feature transform features KW - Cancer KW - Colon KW - Colonography KW - Computer vision KW - Content based retrieval KW - Image databases KW - Image retrieval KW - Optical imaging KW - Tomography KW - Virtual colonoscopy KW - Bag-of-Words KW - CT Colonography KW - Computer-Aided Detection KW - Content-Based Image Retrieval KW - Scale Invariant Features DO - 10.1109/ISBI.2010.5490249 JO - 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro IS - SN - 1945-7928 VO - VL - JA - 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro Y1 - 14-17 April 2010 ER - TY - CONF TI - Identification of spinal vertebrae using mathematical morphology and level set method T2 - 2011 IEEE Nuclear Science Symposium Conference Record SP - 3105 EP - 3107 AU - P. H. Lim AU - U. Bagci AU - O. Aras AU - L. Bai PY - 2011 KW - Gaussian distribution KW - bone KW - computerised tomography KW - diseases KW - image segmentation KW - medical disorders KW - medical image processing KW - CT image analysis KW - Gaussian kernel method KW - clinical management strategies KW - cortical bone KW - effective pharmacological treatments KW - image processing techniques KW - image segmentation KW - internal boundaries KW - level set evolution KW - level set method KW - level set segmentation KW - mathematical morphology KW - medical image analysis KW - quantitative platform KW - spinal disorder analysis KW - spinal vertebrae segmentation framework KW - vertebrae shape complexity KW - vertebral fractures KW - Image segmentation KW - Legged locomotion KW - Silicon KW - Visualization DO - 10.1109/NSSMIC.2011.6152563 JO - 2011 IEEE Nuclear Science Symposium Conference Record IS - SN - 1082-3654 VO - VL - JA - 2011 IEEE Nuclear Science Symposium Conference Record Y1 - 23-29 Oct. 2011 ER - TY - JOUR TI - Progress in the analysis of heart-rate variability [Guest Editorial] T2 - IEEE Engineering in Medicine and Biology Magazine SP - 22 EP - 23 AU - J. F. Thayer PY - 2002 KW - Animals KW - Biomedical engineering KW - Biomedical measurements KW - Frequency measurement KW - Heart rate variability KW - Particle measurements KW - Spectral analysis KW - Temperature KW - Testing KW - Time frequency analysis KW - Animals KW - Data Interpretation, Statistical KW - Heart KW - Heart Rate KW - Humans KW - Signal Processing, Computer-Assisted DO - 10.1109/MEMB.2002.1032634 JO - IEEE Engineering in Medicine and Biology Magazine IS - 4 SN - 0739-5175 VO - 21 VL - 21 JA - IEEE Engineering in Medicine and Biology Magazine Y1 - July-Aug. 2002 ER - TY - CONF TI - Intra-hepatic vessel segmentation and classification in multi-phase CT using optimized graph cuts T2 - 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro SP - 1982 EP - 1985 AU - V. Pamulapati AU - B. J. Wood AU - M. G. Linguraru PY - 2011 KW - Hessian matrices KW - blood vessels KW - computerised tomography KW - diagnostic radiography KW - image classification KW - image segmentation KW - liver KW - medical image processing KW - 4D graph-based method KW - Hessian-based vesselness likelihood KW - hybrid classification step KW - image classification KW - intrahepatic blood vessel segmentation KW - multiphase CT KW - optimized graph cuts KW - portal veins KW - segmental anatomy KW - Computed tomography KW - Image segmentation KW - Liver KW - Portals KW - Surgery KW - Three dimensional displays KW - Veins KW - classification KW - contrast-enhanced CT KW - graph KW - hepatic vein KW - liver KW - portal vein KW - segmentation DO - 10.1109/ISBI.2011.5872799 JO - 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro IS - SN - 1945-7928 VO - VL - JA - 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro Y1 - March 30 2011-April 2 2011 ER - TY - CONF TI - Osteoporotic and neoplastic compression fracture classification on longitudinal CT T2 - 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) SP - 1181 EP - 1184 AU - Y. Wang AU - J. Yao AU - J. E. Burns AU - R. Summers PY - 2016 KW - Bones KW - Computed tomography KW - Density measurement KW - Neoplasms KW - Osteoporosis KW - Support vector machines KW - classification KW - neoplastic KW - osteoporotic KW - vertebral compression fracture DO - 10.1109/ISBI.2016.7493477 JO - 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) IS - SN - VO - VL - JA - 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) Y1 - 13-16 April 2016 ER - TY - CONF TI - Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification T2 - 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering SP - 1439 EP - 1444 AU - G. Z. Li AU - X. Q. Zeng AU - J. Y. Yang AU - M. Q. Yang PY - 2007 KW - DNA KW - cancer KW - feature extraction KW - genetics KW - learning (artificial intelligence) KW - medical computing KW - molecular biophysics KW - pattern classification KW - statistical analysis KW - tumours KW - DNA microarray KW - PLSDRg algorithm KW - feature selection KW - gene expression KW - gene selection KW - machine learning KW - partial least squares based dimension reduction KW - t-statistics KW - tumor classification KW - Bioinformatics KW - Computer science KW - DNA KW - Gene expression KW - Genomics KW - Humans KW - Least squares methods KW - Machine learning KW - Medical diagnostic imaging KW - Neoplasms KW - Dimension Reduction KW - Gene Selection KW - Partial Least Squares DO - 10.1109/BIBE.2007.4375763 JO - 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering IS - SN - VO - VL - JA - 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering Y1 - 14-17 Oct. 2007 ER - TY - CONF TI - Accuracy and reliability of haptic spasticity assessment using HESS (Haptic Elbow Spasticity Simulator) T2 - 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society SP - 8527 EP - 8530 AU - J. Kim AU - H. S. Park AU - D. L. Damiano PY - 2011 KW - medical robotics KW - muscle KW - paediatrics KW - reliability KW - Fleiss kappa KW - HESS KW - cerebral palsy KW - clinical assessment KW - clinical data KW - haptic elbow spasticity simulator KW - haptic spasticity assessment KW - interrater reliability KW - modified Ashworth scale KW - muscle tone KW - programmable robotic system KW - Accuracy KW - Elbow KW - Haptic interfaces KW - Muscles KW - Reliability KW - Torque KW - Training KW - Cerebral Palsy KW - Child KW - Elbow KW - Humans KW - Muscle Spasticity KW - Questionnaires KW - Reproducibility of Results KW - Robotics KW - Touch DO - 10.1109/IEMBS.2011.6092104 JO - 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society IS - SN - 1094-687X VO - VL - JA - 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society Y1 - Aug. 30 2011-Sept. 3 2011 ER - TY - CONF TI - Assessment of myofascial trigger points (MTrPs): A new application of ultrasound imaging and vibration sonoelastography T2 - 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society SP - 5585 EP - 5588 AU - S. Sikdar AU - J. P. Shah AU - E. Gilliams AU - T. Gebreab AU - L. H. Gerber PY - 2008 KW - Acoustic imaging KW - Analysis of variance KW - Biological tissues KW - Image analysis KW - Image color analysis KW - Muscles KW - Musculoskeletal system KW - Pain KW - Spectral analysis KW - Ultrasonic imaging KW - Algorithms KW - Elasticity Imaging Techniques KW - Humans KW - Image Enhancement KW - Image Interpretation, Computer-Assisted KW - Myofascial Pain Syndromes KW - Physical Stimulation KW - Reproducibility of Results KW - Sensitivity and Specificity KW - Vibration DO - 10.1109/IEMBS.2008.4650480 JO - 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society IS - SN - 1094-687X VO - VL - JA - 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Y1 - 20-25 Aug. 2008 ER - TY - JOUR TI - Lead-free BNT composite film for high-frequency broadband ultrasonic transducer applications T2 - IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control SP - 1533 EP - 1537 AU - X. Yan AU - H. Ji AU - K. H. Lam AU - R. Chen AU - F. Zheng AU - W. Ren AU - Q. Zhou AU - K. K. Shung PY - 2013 KW - bismuth compounds KW - composite materials KW - dielectric polarisation KW - ferroelectric coercive field KW - high-frequency effects KW - permittivity KW - piezoelectric thin films KW - piezoelectric transducers KW - sodium compounds KW - sol-gel processing KW - ultrasonic transducers KW - Bi0.5Na0.5TiO3 KW - axial resolution KW - coercive field KW - dielectric constant KW - high-frequency broadband ultrasonic transducer applications KW - high-frequency needle transducer KW - lateral resolution KW - lead-free BNT composite film KW - piezoelectric composite thick film KW - remnant polarization KW - sol-gel method KW - wire phantom image KW - 0 DO - 10.1109/TUFFC.2013.2726 JO - IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control IS - 7 SN - 0885-3010 VO - 60 VL - 60 JA - IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control Y1 - July 2013 ER - TY - CONF TI - Interfaces and integration of medical image analysis frameworks: Challenges and opportunities T2 - 2010 Biomedical Sciences and Engineering Conference SP - 1 EP - 4 AU - K. Covington AU - E. S. McCreedy AU - M. Chen AU - A. Carass AU - N. Aucoin AU - B. A. Landman PY - 2010 KW - Biomedical imaging KW - Collaborative work KW - Data analysis KW - Image analysis KW - Java KW - Large scale integration KW - Large-scale systems KW - Merging KW - Software tools KW - Technological innovation DO - 10.1109/BSEC.2010.5510850 JO - 2010 Biomedical Sciences and Engineering Conference IS - SN - VO - VL - JA - 2010 Biomedical Sciences and Engineering Conference Y1 - 25-26 May 2010 ER - TY - CONF TI - Atlas based AAM and SVM model for fully automatic MRI prostate segmentation T2 - 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society SP - 2881 EP - 2585 AU - R. Cheng AU - B. Turkbey AU - W. Gandler AU - H. K. Agarwal AU - V. P. Shah AU - A. Bokinsky AU - E. McCreedy AU - S. Wang AU - S. Sankineni AU - M. Bernardo AU - T. Pohida AU - P. Choyke AU - M. J. McAuliffe PY - 2014 KW - biological organs KW - biomedical MRI KW - edge detection KW - image segmentation KW - image texture KW - medical image processing KW - support vector machines KW - unsupervised learning KW - atlas based AAM model KW - atlas based SVM model KW - fully automatic MRI prostate boundary segmentation KW - interpatient prostate shape variability KW - interpatient prostate texture variability KW - supervised learning framework KW - Active appearance model KW - Image segmentation KW - Magnetic resonance imaging KW - Shape KW - Solid modeling KW - Support vector machines KW - Training DO - 10.1109/EMBC.2014.6944225 JO - 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society IS - SN - 1094-687X VO - VL - JA - 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Y1 - 26-30 Aug. 2014 ER - TY - CONF TI - Segmentation and surface reconstruction model of prostate MRI to improve prostate cancer diagnosis T2 - 2013 IEEE 10th International Symposium on Biomedical Imaging SP - 185 EP - 189 AU - R. Cheng AU - M. Bernardo AU - J. Senseney AU - A. Bokinsky AU - W. Gandler AU - B. Turkbey AU - T. Pohida AU - P. Choyke AU - M. J. McAuliffe PY - 2013 KW - biological organs KW - biomedical MRI KW - cancer KW - image reconstruction KW - image segmentation KW - medical image processing KW - MRI images KW - MRI prostate segmentation model KW - MRI prostate surface reconstruction model KW - computer aided design KW - high resolution 3D prostate surface KW - histopathology slide KW - image processing KW - multiparametric MRI validation KW - nonisotropic voxel resolution KW - orthogonal view KW - prostate cancer diagnosis KW - radical prostatectomy specimen KW - targeted biopsy specimen KW - Image reconstruction KW - Image resolution KW - Image segmentation KW - Magnetic resonance imaging KW - Splines (mathematics) KW - Surface reconstruction KW - Surface treatment KW - Prostate Segmentation KW - Registration KW - Surface Reconstruction DO - 10.1109/ISBI.2013.6556443 JO - 2013 IEEE 10th International Symposium on Biomedical Imaging IS - SN - 1945-7928 VO - VL - JA - 2013 IEEE 10th International Symposium on Biomedical Imaging Y1 - 7-11 April 2013 ER - TY - JOUR TI - A Learning-Based Similarity Fusion and Filtering Approach for Biomedical Image Retrieval Using SVM Classification and Relevance Feedback T2 - IEEE Transactions on Information Technology in Biomedicine SP - 640 EP - 646 AU - M. M. Rahman AU - S. K. Antani AU - G. R. Thoma PY - 2011 KW - biomedical MRI KW - biomedical optical imaging KW - biomedical ultrasonics KW - content-based retrieval KW - diagnostic radiography KW - feature extraction KW - feedback KW - filtering theory KW - image classification KW - image fusion KW - image matching KW - image representation KW - image retrieval KW - learning (artificial intelligence) KW - medical image processing KW - positron emission tomography KW - support vector machines KW - SVM classification KW - adaptive linear combination KW - biomedical image retrieval KW - database images KW - feature representation KW - image classification KW - image filtering KW - keypoint-based features KW - multiclass support vector machine classifier KW - query images KW - relevance feedback KW - similarity fusion KW - similarity matching KW - supervised learning KW - Databases KW - Feature extraction KW - Image color analysis KW - Medical diagnostic imaging KW - Support vector machines KW - Training KW - Classification KW - classifier combination KW - content-based image retrieval (CBIR) KW - medical imaging KW - relevance feedback (RF) KW - similarity fusion KW - Algorithms KW - Artificial Intelligence KW - Databases, Factual KW - Diagnostic Imaging KW - Humans KW - Image Processing, Computer-Assisted DO - 10.1109/TITB.2011.2151258 JO - IEEE Transactions on Information Technology in Biomedicine IS - 4 SN - 1089-7771 VO - 15 VL - 15 JA - IEEE Transactions on Information Technology in Biomedicine Y1 - July 2011 ER - TY - JOUR TI - Shortest Path Refinement for Motion Estimation From Tagged MR Images T2 - IEEE Transactions on Medical Imaging SP - 1560 EP - 1572 AU - X. Liu AU - J. L. Prince PY - 2010 KW - biomedical MRI KW - cardiology KW - image representation KW - medical image processing KW - motion estimation KW - muscle KW - heart KW - image graph representation KW - magnetic resonance tagging KW - motion estimation KW - muscles KW - optimal tracking order KW - refinement method KW - shortest path computations KW - single source shortest path problem KW - tagged MR Imaging KW - through-plane motion KW - tissue KW - tongue KW - Heart KW - Magnetic resonance KW - Motion estimation KW - Motion measurement KW - Muscles KW - Shortest path problem KW - Tagging KW - Tongue KW - Tracking KW - Yield estimation KW - Dijkstra's algorithm KW - harmonic phase (HARP) KW - magnetic resonance (MR) tagging KW - motion tracking KW - shortest path KW - Algorithms KW - Computer Simulation KW - Fourier Analysis KW - Heart KW - Humans KW - Image Processing, Computer-Assisted KW - Magnetic Resonance Imaging KW - Movement KW - Signal Processing, Computer-Assisted KW - Tongue DO - 10.1109/TMI.2010.2045509 JO - IEEE Transactions on Medical Imaging IS - 8 SN - 0278-0062 VO - 29 VL - 29 JA - IEEE Transactions on Medical Imaging Y1 - Aug. 2010 ER - TY - CONF TI - Development challenges of brain functional monitoring using untethered broadband frequency modulated fNIR system T2 - 2010 IEEE International Topical Meeting on Microwave Photonics SP - 354 EP - 357 AU - K. Manseta AU - E. Sultan AU - A. M. Khwaja AU - K. Pourrezaei AU - A. Joshi AU - L. Najafizadeh AU - A. Gandjbakhche AU - A. S. Daryoush PY - 2010 KW - absorption coefficients KW - biomedical optical imaging KW - biomedical telemetry KW - body sensor networks KW - brain KW - broadband networks KW - data communication KW - infrared imaging KW - optical links KW - patient monitoring KW - refractive index KW - ultra wideband communication KW - absorption coefficient KW - anisotropy factor KW - brain functional monitoring KW - broadband system KW - data collection KW - free space optical system KW - functional near-infrared imaging system KW - modified scattering coefficient KW - optical link KW - optical properties KW - refractive index KW - remote processor KW - sensor KW - signal to noise ratio KW - spectroscopic brain matter measurement KW - ultrawideband communication system KW - untethered broadband frequency modulated fNIR system KW - wireless access KW - Lenses KW - Noise KW - Optical fiber communication KW - Optical fiber sensors KW - Optical fibers KW - Optical receivers KW - Optical transmitters DO - 10.1109/MWP.2010.5664627 JO - 2010 IEEE International Topical Meeting on Microwave Photonics IS - SN - VO - VL - JA - 2010 IEEE International Topical Meeting on Microwave Photonics Y1 - 5-9 Oct. 2010 ER - TY - CONF TI - A pilot study on effects of 4×1 High-Definition tDCS on motor cortex excitability T2 - 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society SP - 735 EP - 738 AU - E. M. Caparelli-Daquer AU - T. J. Zimmermann AU - E. Mooshagian AU - L. C. Parra AU - J. K. Rice AU - A. Datta AU - M. Bikson AU - E. M. Wassermann PY - 2012 KW - bioelectric phenomena KW - biomedical electrodes KW - brain KW - 4×1 high-definition tDCS effects KW - HD-tDCS KW - MEP amplitude KW - TMS motor evoked potential KW - cortical excitability KW - focal non-invasive neuromodulatory technique KW - high-resolution computational model KW - motor cortex excitability KW - sham stimulation KW - specialized small electrodes KW - transcranial Direct Current Stimulation KW - Anodes KW - Brain modeling KW - Computational modeling KW - DC motors KW - Humans KW - Modulation KW - Adult KW - Computer Simulation KW - Deep Brain Stimulation KW - Evoked Potentials, Motor KW - Female KW - Humans KW - Male KW - Models, Neurological KW - Motor Cortex KW - Pilot Projects KW - Transcranial Magnetic Stimulation KW - Young Adult DO - 10.1109/EMBC.2012.6346036 JO - 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society IS - SN - 1094-687X VO - VL - JA - 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society Y1 - Aug. 28 2012-Sept. 1 2012 ER - TY - CONF TI - Assessing protein function using a combination of supervised and unsupervised learning T2 - Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06) SP - 35 EP - 44 AU - J. 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Yang PY - 2006 KW - biological techniques KW - biology computing KW - data handling KW - decision trees KW - genetics KW - learning (artificial intelligence) KW - molecular biophysics KW - pattern classification KW - pattern clustering KW - proteins KW - recursive functions KW - support vector machines KW - unsupervised learning KW - clustering algorithm KW - decision trees KW - feature space decomposition KW - machine learning techniques KW - multiple class labeled data handling KW - protein function assessment KW - protein phylogenetic profiles KW - recursive maximum-contrast tree algorithm KW - sequenced genomes KW - supervised learning KW - support vector machines KW - training instance partition KW - tree-based classifier KW - unsupervised learning KW - Bioinformatics KW - Classification tree analysis KW - Clustering algorithms KW - Genomics KW - Machine learning KW - Partitioning algorithms KW - Phylogeny KW - Proteins KW - Testing KW - Unsupervised learning DO - 10.1109/BIBE.2006.253313 JO - Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06) IS - SN - VO - VL - JA - Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06) Y1 - 16-18 Oct. 2006 ER - TY - JOUR TI - Automatic Segmentation of Spinal Canals in CT Images via Iterative Topology Refinement T2 - IEEE Transactions on Medical Imaging SP - 1694 EP - 1704 AU - Q. Wang AU - L. Lu AU - D. Wu AU - N. El-Zehiry AU - Y. Zheng AU - D. Shen AU - K. S. Zhou PY - 2015 KW - bone KW - computerised tomography KW - diseases KW - feature extraction KW - image classification KW - image segmentation KW - iterative methods KW - medical image processing KW - probability KW - Haar-like features KW - PET-CT scans KW - automatic segmentation pipeline KW - bone fractures KW - bone pathologies KW - computed tomography images KW - fully automatic cascaded pipeline KW - highly challenging image cohort KW - interactive random-walk solvers KW - iterative topology refinement KW - lesions KW - multiple clinical sites KW - probabilistic boosting tree KW - robust voxelwise classification KW - scoliosis KW - spinal canals KW - Computed tomography KW - Feature extraction KW - Image segmentation KW - Irrigation KW - Testing KW - Topology KW - Training KW - Image landmark detection KW - image segmentation KW - random walk KW - spinal canal KW - topology KW - 0 DO - 10.1109/TMI.2015.2436693 JO - IEEE Transactions on Medical Imaging IS - 8 SN - 0278-0062 VO - 34 VL - 34 JA - IEEE Transactions on Medical Imaging Y1 - Aug. 2015 ER - TY - JOUR TI - Supraorbital Opacity Pulses During Carotid Artery Compression: A Method for the Detection of Carotid Obstruction T2 - IEEE Transactions on Biomedical Engineering SP - 84 EP - 87 AU - W. 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Summers PY - 2010 KW - cancer KW - computerised tomography KW - curve fitting KW - medical image processing KW - splines (mathematics) KW - B-spline method KW - CTC KW - NDACC method KW - colorectal cancer screening KW - computed tomographic colonography KW - curve fitting KW - normalized distance along the colon centerline KW - optical colonoscopy KW - polyp location prediction KW - Cancer KW - Colon KW - Colonography KW - Computed tomography KW - Curve fitting KW - Fitting KW - Spline KW - B-Spline KW - CT colonography KW - Centerline Fitting KW - Optical colonoscopy KW - Polyp Detection DO - 10.1109/ICIP.2010.5652341 JO - 2010 IEEE International Conference on Image Processing IS - SN - 1522-4880 VO - VL - JA - 2010 IEEE International Conference on Image Processing Y1 - 26-29 Sept. 2010 ER - TY - CONF TI - A new method for computational drug repositioning using drug pairwise similarity T2 - 2012 IEEE International Conference on Bioinformatics and Biomedicine SP - 1 EP - 4 AU - J. 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Lu PY - 2012 KW - bioinformatics KW - biological techniques KW - drugs KW - graph theory KW - molecular biophysics KW - bipartite-graph based method KW - chemical structure KW - computational drug repositioning KW - drug discovery KW - drug pairwise similarity KW - drug structure information KW - drug-target interaction information KW - similarity-based methods KW - Bipartite graph KW - Chemicals KW - Clinical trials KW - Diseases KW - Drugs KW - Proteins KW - Sensitivity KW - bipartite graph KW - chemical similarity KW - drug repositioning KW - target interaction KW - target similarity DO - 10.1109/BIBM.2012.6392722 JO - 2012 IEEE International Conference on Bioinformatics and Biomedicine IS - SN - VO - VL - JA - 2012 IEEE International Conference on Bioinformatics and Biomedicine Y1 - 4-7 Oct. 2012 ER - TY - CONF TI - Renal tumor quantification and classification in triple-phase contrast-enhanced abdominal CT T2 - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro SP - 1310 EP - 1313 AU - M. 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